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Prunus persica scaffold sequences

Genome / Gene Models

The genome assembly displayed at PeGDB is version JGI v1.0; gene models are from JGI v1.0. For more information see Data & Methods. More about the genome...

Alignments to Genome

PeGDB displays high quality spliced alignments for EST, cDNA, PUT, related species protein, and Probe. The current database version is PeGDB179. For more information see Data & Methods.

Search / Download

Search or download any sequence from PeGDB using Search / Download links at left. Complete datasets can also be downloaded from the PeGDB Download page or by ftp. More about search / download...

View the latest Prunus persica sequence count at PlantGDB.


Sequence analysis tools accessed from the Genome Context View menu use the current genomic region as input. Or, to access the same tools without a genomic context, use PeGDB left menubar Tools links. More about tools...

Community Annotation

Help annotate the Prunus persica genome using our yrGATE gene structure annotation tool (see Overview), aided by GAEVAL tables that flag problematic gene models. Video demo: QuickTime   Flash  

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Custom Track Display

Distributed Annotation Service (DAS) (see Overview) is available for displaying remotely served genome alignments at PeGDB, as well as for displaying selected PeGDB tracks on a different genome browser (e.g. Ensembl, GBrowse). How to use DAS...

Additional custom track display features are under development.

Annotated Protein Alignments

A searchable table of splice-aligned, annotated protein models.


Genome browser video demo: QuickTime  Flash 
For help pages and tutorials focusing on genome browser features and gene annotation, see side bar.

PeGDB is being developed as a part of our NSF-funded project "Cyberinfrastructure for (Comparative) Plant Genome Research Through PlantGDB" (PI: Volker Brendel). The purpose of this resource is to provide a convenient sequence-centered genome view for Prunus persica, with a narrow focus on gene structure annotation.

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