GeneSeqer. Version of February 10, 2003.
Date run: Fri Feb 14 15:10:22 2003
(Bayesian) Splice site model (species): Arabidopsis thaliana
Fast search parameters: MinMatchLen 12, MinQuality 30.
________________________________________________________________________________
Sequence 1: 21326110, from 1 to 60000, both strands analyzed.
EST library file: /PlantGDB/DATA/GeneSeqer/Index/STtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 15
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LPtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/OStug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 16
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LJtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SBtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 129
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 4 HitsTableSize = 57
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MCtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ZMtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 21
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MPtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 3 HitsTableSize = 32
EST library file: /PlantGDB/DATA/GeneSeqer/Index/BVSVtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SCtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LEtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 23
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SPtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 46
EST library file: /PlantGDB/DATA/GeneSeqer/Index/AStug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTPTtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ATtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 12
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 29
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MStug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GAtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 15
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LHtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GHtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MTtug1; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 25
EST library file: /PlantGDB/DATA/GeneSeqer/Index/STtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 14
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LPtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/OStug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 14
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LJtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SBtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 89
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 4 HitsTableSize = 33
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MCtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 1 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ZMtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 25
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MPtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 29
EST library file: /PlantGDB/DATA/GeneSeqer/Index/BVSVtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SCtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LEtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 12
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SPtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 21
EST library file: /PlantGDB/DATA/GeneSeqer/Index/AStug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 6
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTPTtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ATtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 8
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 23
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MStug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GAtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 9
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LHtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GHtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MTtug1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 20
********************************************************************************
EST sequence 137 +strand (File: ZMtuc02-12-23.15837+)
1 ATATGCACAA ATGTAGTGCA TCACCTGCAC CAATAGTCAA GGGCGACAAA TATGGGGATT
61 TTCAATGCCC TAGGAACCAG TACGAGCTCG ACCAAATGAA AGTGGTTCCA TATGCTTCTG
121 CTGTCGGAAG CCTGCAGTAT GCTCAAGTGT GTACGCGCCC TGACTTAGCT TTTGTTACCG
181 GGTTGCTTGG CAGATTTCAA TGTAATCCAG GGATTGAGCA CTGGAAATTG GTAAAGAAAG
241 TCTTGCGGTA TTTGCAAGGC ACGAAAGGCC TCATGATGAC GTATAGAAGA ACAGATTCAC
301 TCCAAATAGT GGGGTACACA GATTCTGATT ATGCGGGAGA TGATAGAAAA TCCACATCGG
361 GATATGTGTT CACTCTCGCA GGTGGAGCTA TTTCATGGAA AAGCTCGAAA CAAACCGTCA
421 CTACATCGTC CACAGAGTAT GCCGAGTTTG TAGCGTGTTT TGAGGCTTCG GGGCAGGTGA
481 ACTGGTTAAA GAAGTTCATA CCCGGTTTAA AGGGTGGTCG ACAGCATACA TAAACCACTA
541 AAGTTATACT GCGATAATGC TCCAGCAGTA CAGTATGCTC ACAACAATA
Predicted gene structure (within gDNA segment 2444 to 4115):
Exon 1 3220 3810 ( 591 n); cDNA 1 589 ( 589 n); score: 0.804
MATCH 21326110+ ZMtuc02-12-23.15837+ 0.804 591 1.003 C
PGS_21326110+_ZMtuc02-12-23.15837+ (3220 3810)
Alignment (genomic DNA sequence = upper lines):
ATATGCATAA GTGTAGACCT TCACCTGCTC CTATTGTAAA AGGTGACAAG TATGGGGAAC 3279
||||||| || ||||| | |||||||| | | || || || || ||||| ||||||||
ATATGCACAA ATGTAGTGCA TCACCTGCAC CAATAGTCAA GGGCGACAAA TATGGGGATT 60
ATCAATGTCC CAAGAGCAAG TTCGAGCGCG ATCGCATGCA AGCCGTTCCA TACGCTTCAG 3339
|||||| || | || | || | ||||| || | | ||| | || |||||| || ||||| |
TTCAATGCCC TAGGAACCAG TACGAGCTCG ACCAAATGAA AGTGGTTCCA TATGCTTCTG 120
CTGTCGGAAG CTTACAGTAT GCTCAAGTGT GCACACGCCC AGACCTGGCT TTTGTGACCG 3399
|||||||||| | | |||||| |||||||||| | || ||||| ||| | ||| ||||| ||||
CTGTCGGAAG CCTGCAGTAT GCTCAAGTGT GTACGCGCCC TGACTTAGCT TTTGTTACCG 180
GGCTACTTGG TAGATATCAA AGTAATCCAG GTATGGAACA CTGGAATCTA GTGAAGAAAG 3459
|| | ||||| |||| |||| ||||||||| | || || || |||||| | || |||||||
GGTTGCTTGG CAGATTTCAA TGTAATCCAG GGATTGAGCA CTGGAAATTG GTAAAGAAAG 240
TCTTAAGGTA CTTGCAAGGC ACGAAAGGGC TCATGTTAAC CTATAGAAGA TCTGATGACC 3519
|||| |||| ||||||||| |||||||| | ||||| | || ||||||||| | ||| |
TCTTGCGGTA TTTGCAAGGC ACGAAAGGCC TCATGATGAC GTATAGAAGA ACAGATTCAC 300
TACAAATAGT AGGGTATTCA GATTCTGATT ACGCGGGAGA TGATAGAAAG TCTACCTCGG 3579
| |||||||| ||||| || |||||||||| | |||||||| ||||||||| || || ||||
TCCAAATAGT GGGGTACACA GATTCTGATT ATGCGGGAGA TGATAGAAAA TCCACATCGG 360
GGTATATATT CACTCTCGCG CAAGGAGCCA TATCATGGAA GAGCTCAAAA CAAACAATAG 3639
| ||| | || ||||||||| ||||| | | |||||||| ||||| ||| ||||| |
GATATGTGTT CACTCTCGCA GGTGGAGCTA TTTCATGGAA AAGCTCGAAA CAAAC---CG 417
TCACTGCATC GTCCACAATG TATGCTGAGT TTATTGCTTG TTATGAGGCA TCAGGACAGG 3699
||||| |||| ||||||| | ||||| |||| || | || || || |||||| || || ||||
TCACTACATC GTCCACAGAG TATGCCGAGT TTGTAGCGTG TTTTGAGGCT TCGGGGCAGG 477
TGAATTGGCT TAAGAAATTT ATACCCAGTT TAAA-GGTGG TCGACAGCAT CGATAAACCA 3758
|||| ||| | ||||| || |||||| ||| |||| ||||| |||||||||| ||||||||
TGAACTGGTT AAAGAAGTTC ATACCCGGTT TAAAGGGTGG TCGACAGCAT ACATAAACCA 537
CTAAAGTTGT ATTGTGACAA CGAGCCAGCA GTGTTGTATG CTCACAACAA TA 3810
|||||||| | | || || || | |||||| || ||||| |||||||||| ||
CTAAAGTTAT ACTGCGATAA TGCTCCAGCA GTACAGTATG CTCACAACAA TA 589
********************************************************************************
EST sequence 286 -strand (File: 25417338-)
1 CATATAAGGA CAAAGGATAT GCTTGCGGAT CCGCTAACGA AAGGCTTACC ATCCAATGTG
61 TTCAAGGAAC ACTTAGCCGG CATGGGTCTA AGGAAAAGCC TTATGATTTC TGGATAGGCC
121 CAAAAGGAAC AGAGTTTGTT TCTGAACATA ACGTATGTTG TAGCCGTATG ATTCTAACGG
181 CAATTGAGTT GTGATGATGA AACATGCTCT ATGTACCAAT ATGTGATGAA AC
Predicted gene structure (within gDNA segment 3445 to 5005):
Exon 1 3894 4008 ( 115 n); cDNA 1 116 ( 116 n); score: 0.835
MATCH 21326110+ 25417338- 0.835 115 0.496 C
PGS_21326110+_25417338- (3894 4008)
Alignment (genomic DNA sequence = upper lines):
CATATAAGCA CAGAAAAGAT GCTAGCGGAT CCGCTTACGA AAGGCTTACC GCCCAATGTG 3953
|||||||| | || | | || ||| |||||| ||||| |||| |||||||||| ||||||||
CATATAAGGA CAAAGGATAT GCTTGCGGAT CCGCTAACGA AAGGCTTACC ATCCAATGTG 60
TTCAGAGAAC ATGTAGCCGG CATGGGTTTA AGGGAAAGCC TG-TGATTCC TGGATA 4008
|||| |||| | ||||||| ||||||| || ||| |||||| | ||||| | ||||||
TTCAAGGAAC ACTTAGCCGG CATGGGTCTA AGGAAAAGCC TTATGATTTC TGGATA 116
********************************************************************************
EST sequence 84 -strand (File: 11590316-)
1 TCCAAAACAA ATCTGTTGAC AGAACATCAA TGAAACAAAC AATGAAACAA CCTCCACAAT
61 GCATGAGTTT CACCTTGATG TTTCCTAGGC TGGGCAAGGC ATTTA
Predicted gene structure (within gDNA segment 6209 to 5468):
Exon 1 5904 5800 ( 105 n); cDNA 1 105 ( 105 n); score: 0.943
MATCH 21326110- 11590316- 0.943 105 1.000 C
PGS_21326110-_11590316- (5904 5800)
Alignment (genomic DNA sequence = upper lines):
TCCAAAACAA ATATGCTGAC AGAGCATCAA TGAAACGAAC AATGAAACAA CATCCACAAT 5845
|||||||||| || || |||| ||| |||||| |||||| ||| |||||||||| | ||||||||
TCCAAAACAA ATCTGTTGAC AGAACATCAA TGAAACAAAC AATGAAACAA CCTCCACAAT 60
GCATGAGTTT CACCTTGATG TTTCCTAGGC TGGGCAAAGC ATTTA 5800
|||||||||| |||||||||| |||||||||| ||||||| || |||||
GCATGAGTTT CACCTTGATG TTTCCTAGGC TGGGCAAGGC ATTTA 105
********************************************************************************
EST sequence 138 +strand (File: ZMtuc02-12-23.8497+)
1 GCACGAGGTT GTTGTGGACA AAAAGAGCAC AAAAGTGGGT AGGGCAAGCC AACCACACTC
61 GCAGCCAGCC TGCCCGCTCG CCCGCCCGCC ATTCTTGCCG ATTCGAGTCG ACGTCACGCC
121 TCCGGCGCCC CCTTCGGTTG TCACCTCGGG GGTCGCGGAT TGGTGGAGGG GAGGATTTGA
181 GCGGCGCGGC CATGGATACA ACATCTAGGG CCGCCATAGT ATCCCGTCGC TCCACCAGAC
241 GGAGATCAAC TGGGATAACC TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT
301 CAGCGGGGTC ACCGCGGCGC TGTACCCTGT ATCGGTGGTC AAGACCCGGA TGCAGGTTGC
361 CTCTGGGGAC GCCATGGGGA GGAACGCACT GGCTACCTTC AAGAACATCC TTAAGGTGGA
421 CGGCGTGCCA GGGCTGTACC GGGGGTTTCC TACTGTTATA ATTGGGGCTG TACCAACTAG
481 GATCATCTTC CTCACGGCGC TTGAGACAAC CAAAGCAGCC TCTCTCAAGC TTGTTGAGCC
541 CTTCAAGCTG TCAGAGCCGG TGCAGGCTGC CTTTGCCAAT GGCCTTGCCG GTCTGTCGGC
601 ATCTACATGT TCGCAGGCTA
Predicted gene structure (within gDNA segment 7480 to 9005):
Exon 1 7879 8058 ( 180 n); cDNA 77 258 ( 182 n); score: 0.928
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.90), Pa: 0.581 (s: 0.98)
Exon 2 8339 8700 ( 362 n); cDNA 259 620 ( 362 n); score: 0.950
MATCH 21326110+ ZMtuc02-12-23.8497+ 0.943 542 0.874 C
PGS_21326110+_ZMtuc02-12-23.8497+ (7879 8058,8339 8700)
Alignment (genomic DNA sequence = upper lines):
CCCGCCCGCC CGCCATTCTT GCCGAATCGA GTCCACGCCA CGCCTCCTGC GCCCCCTTCG 7938
| |||||||| |||||||||| ||||| |||| ||| ||| || ||||||| || ||||||||||
CTCGCCCGCC CGCCATTCTT GCCGATTCGA GTCGACGTCA CGCCTCCGGC GCCCCCTTCG 136
GTTCTCACCT CGGGAGTCGC GGATTGGTGG AGGGGAGGAT TTGAGCGGCG CGGCCATGGA 7998
||| |||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTGTCACCT CGGGGGTCGC GGATTGGTGG AGGGGAGGAT TTGAGCGGCG CGGCCATGGA 196
TACAACCTCT AGGGCCGCCA -AG-ATCCCG TCGCTCCACC AGACGGAGAT CAACTGGGAC 8056
|||||| ||| |||||||||| || |||||| |||||||||| |||||||||| |||||||||
TACAACATCT AGGGCCGCCA TAGTATCCCG TCGCTCCACC AGACGGAGAT CAACTGGGAT 256
AAGTAAGCAA CCCACCGGTC TTGTAATCCT TAGGTTCCCA TTTCGTGCCG ATTTCCGCCT 8116
||
AA........ .......... .......... .......... .......... .......... 258
TTCTCGCGGT CCTAGTCTTC TAGAAATTTA GCTCCGATCG TTGAACTGTG TCCCCCGCCC 8176
.......... .......... .......... .......... .......... .......... 258
TATTCCGGAT TGGCTTTACC GCCTTAGGAT TAGGAACTGT TGTTTGAGGA TTTGACATGG 8236
.......... .......... .......... .......... .......... .......... 258
CTGTTCATGC TCCTGGACGA AGCGCAATTT GGGGATTCGT AGCTTATTCC GTTGTTTCCG 8296
.......... .......... .......... .......... .......... .......... 258
ATTCTTTTAC TGTTCTCAAA TCGTGGCGCT GAAATGTTGC AGCCTCGACA AGACCAAGCT 8356
|||||||| ||||||||||
.......... .......... .......... .......... ..CCTCGACA AGACCAAGCT 276
CTACGTGGTG GGCGCAGGCA TGTTCAGCGG CGTCACCGTG GCGCTGTATC CTGTCTCGGT 8416
|||||||||| |||||||||| |||||||||| ||||||| | |||||||| | |||| |||||
CTACGTGGTG GGCGCAGGCA TGTTCAGCGG GGTCACCGCG GCGCTGTACC CTGTATCGGT 336
GGTCAAGACC CGGATGCAGG TTGCCTCTGG GGACGCCATG AGGAGGAACG CGCTGGCTAC 8476
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | ||||||||
GGTCAAGACC CGGATGCAGG TTGCCTCTGG GGACGCCATG GGGAGGAACG CACTGGCTAC 396
CTTCAAGAAC ATCCTCAAGA TGGACGGCGT GCCAGGGCTG TACCGGGGGT TTGCTACCGT 8536
|||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| || |||| ||
CTTCAAGAAC ATCCTTAAGG TGGACGGCGT GCCAGGGCTG TACCGGGGGT TTCCTACTGT 456
TATCATTGGG GCTGTACCAA CTAGGATCAT CTTCCTCACA GCGCTTGAGA CAACCAAAGC 8596
||| |||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||||||||
TATAATTGGG GCTGTACCAA CTAGGATCAT CTTCCTCACG GCGCTTGAGA CAACCAAAGC 516
AGCCTCGCTT AAGCTTGTTG AGCCCTTCAA GCTGTCAGAG CCGGTGCGGG CTGCCTTTGC 8656
|||||| || |||||||||| |||||||||| |||||||||| ||||||| || ||||||||||
AGCCTCTCTC AAGCTTGTTG AGCCCTTCAA GCTGTCAGAG CCGGTGCAGG CTGCCTTTGC 576
CAATGGCCTT GCTGGTCTGT CAGCGTCTAC ATGTTCGCAG GCTA 8700
|||||||||| || ||||||| | || ||||| |||||||||| ||||
CAATGGCCTT GCCGGTCTGT CGGCATCTAC ATGTTCGCAG GCTA 620
********************************************************************************
EST sequence 149 +strand (File: HVtuc02-11-10.14465+)
1 ATTCGGCACG AGGGCCAGAG GAGGCGAGGA ACACATGCTC TCTTTCCTCC CCGCTGGAGA
61 GTAGCTGCCA AGACCACCAC GGAAGCGGAG GCGCACCACC CAGGCGGGCC ATTCTCGCCG
121 AGCCCCTCCC CCTCCCCCGG CCGCCGCGCC CTCGCCTCCG GGGATCGCGG GATTGGGCGG
181 CCATGGACAC CTCTACTAGG GCGGCCAAGA TCCCCTCCCT CCCCCAACAG ACGGAGATCA
241 ACTGGGACAA CCTCGACATG ACCAAGCTCT ATGTGGTTGG GGCCGGCATG TTCAGCTGCG
301 TGACCGTGGC GCTCTACCCG GTCTCTGTGA TCAAGACCCG GATGCAGGTT GCCTCCGGGG
361 AGGCCATGAG GAGGAACGCC CTGGCCACCT TTAAGAACAT CCTCAAAGTG GATGGGGTGC
421 CTGGGCTCTA CCGAGGGTTT GGGACCGTCA TCACTGGGGC TATCCCGGCT AGGATTATCT
481 TCCTCACGGC GCTCGAGAAG ACAAAGGCGA CTTCACTCAA GCTTGTCGAG CCTATACAGC
541 TGTCACAGTC GATGGAGGCT GCCCTTGCTA ATGGCCTTGC TGGCTCGACG GCGTCTCTGT
601 GTTCACAGGC CGTGTTGGTG CCCATTGATG TGGCTAGTCA GAAATTGATG GTTCAAGGAT
661 ATTCTGGTCA TGTTAGATAT AAGGGTGGAA TCGATGTTGC TCAAAAGATT ATGAAAGCTG
721 ATGGGCCACG GGGATTGTAC ACAGGATTAG GCCTATCTGC TATGACGTAT GCACCATCTA
781 GCGCTGTGTG GTGGGCAAGC TATGGATTCA GCN
Predicted gene structure (within gDNA segment 6601 to 9390):
Exon 1 7984 8058 ( 75 n); cDNA 173 250 ( 78 n); score: 0.760
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.79), Pa: 0.581 (s: 0.88)
Exon 2 8339 8720 ( 382 n); cDNA 251 632 ( 382 n); score: 0.814
Intron 2 8721 8848 ( 128 n); Pd: 0.857 (s: 0.70), Pa: 0.962 (s: 0.86)
Exon 3 8849 9029 ( 181 n); cDNA 633 813 ( 181 n); score: 0.807
MATCH 21326110+ HVtuc02-11-10.14465+ 0.806 638 0.785 C
PGS_21326110+_HVtuc02-11-10.14465+ (7984 8058,8339 8720,8849 9029)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGTCGCT-- -CCACCAGAC 8040
| |||||| ||||| || | ||||||| ||||||||| || || || ||| |||||
TTGGGCGGCC ATGGACACCT CTACTAGGGC GGCCAAGATC CCCTCCCTCC CCCAACAGAC 232
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
|||||||||| ||||||||
GGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 250
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 250
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 250
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 250
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 252
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| ||||| || | | |||||||| |||| |||| ||||||||||
TCGACATGAC CAAGCTCTAT GTGGTTGGGG CCGGCATGTT CAGCTGCGTG ACCGTGGCGC 312
TGTATCCTGT CTCGGTGGTC AAGACCCGGA TGCAGGTTGC CTCTGGGGAC GCCATGAGGA 8460
| || || || ||| ||| || |||||||||| |||||||||| ||| ||||| ||||||||||
TCTACCCGGT CTCTGTGATC AAGACCCGGA TGCAGGTTGC CTCCGGGGAG GCCATGAGGA 372
GGAACGCGCT GGCTACCTTC AAGAACATCC TCAAGATGGA CGGCGTGCCA GGGCTGTACC 8520
||||||| || ||| ||||| |||||||||| |||| |||| || ||||| ||||| ||||
GGAACGCCCT GGCCACCTTT AAGAACATCC TCAAAGTGGA TGGGGTGCCT GGGCTCTACC 432
GGGGGTTTGC TACCGTTATC ATTGGGGCTG TACCAACTAG GATCATCTTC CTCACAGCGC 8580
| ||||||| ||||| ||| | ||||||| | || |||| ||| |||||| ||||| ||||
GAGGGTTTGG GACCGTCATC ACTGGGGCTA TCCCGGCTAG GATTATCTTC CTCACGGCGC 492
TTGAGACAAC CAAAGCAGCC TCGCTTAAGC TTGTTGAGCC CTTCAAGCTG TCAGAGCCGG 8640
| |||| || || || | || || |||| |||| ||||| | ||||| ||| || ||
TCGAGAAGAC AAAGGCGACT TCACTCAAGC TTGTCGAGCC TATACAGCTG TCACAGTCGA 552
TGCGGGCTGC CTTTGCCAAT GGCCTTGCTG GTCTGTCAGC GTCTACATGT TCGCAGGCTA 8700
|| |||||| | |||| ||| |||||||||| | | | || |||| ||| || |||||
TGGAGGCTGC CCTTGCTAAT GGCCTTGCTG GCTCGACGGC GTCTCTGTGT TCACAGGCCG 612
TTTTTGTTCC AATTGATGTG GTATGCCTCT CATGTGCCTT CTATGTGATG TTGTATAGAG 8760
| || || || |||||||||
TGTTGGTGCC CATTGATGTG .......... .......... .......... .......... 632
AAAAAATATC TTACAATATG TTGATGTTAA ATGCTAATTA CAATACTAGA CTACTGTTTT 8820
.......... .......... .......... .......... .......... .......... 632
CATTCTGTTG TGCATTGGAA TGTTTCAGAT TAGCCAGAAA TTGATGGTTC AAGGATATTC 8880
||| |||||| |||||||||| ||||||||||
.......... .......... ........GC TAGTCAGAAA TTGATGGTTC AAGGATATTC 664
TGGTAATGCC AGATACAAAG GTGGATTAGA TGTTGCTCGA AAGGTCATAA AGGCTGATGG 8940
|||| ||| ||||| || | ||||| | || |||||||| | ||| | || | | ||||||||
TGGTCATGTT AGATATAAGG GTGGAATCGA TGTTGCTCAA AAGATTATGA AAGCTGATGG 724
CATTAGGGGG CTGTACAGAG GATTTGGACT GTCTGTTATG ACCTATGCTC CATCCAGTGC 9000
|||| |||||| || |||| || || |||| |||| || ||||| | |||| || ||
GCCACGGGGA TTGTACACAG GATTAGGCCT ATCTGCTATG ACGTATGCAC CATCTAGCGC 784
TGTGTGGTGG GCAAGTTATG GTTCCAGCC 9029
|||||||||| ||||| |||| | | ||||
TGTGTGGTGG GCAAGCTATG GATTCAGCN 813
********************************************************************************
EST sequence 114 +strand (File: TAtuc02-12-22.22955+)
1 GGCCACGGAA GCGGAAGCGC AGGCCAGCGC ACCCCCAGCC GGACCATTCT CGCCGAGCCC
61 TCGCCCTCCC CCGGCCGCGG CGGCGGCGCC CCTCCTCCGC GCCCTCGCCT CCGGGGATCG
121 CGGGATTGGG CGGCGATGGA CACCTCTACT AGGGCGGCCA AGATCCCCTC CCTCCCCCAA
181 CAGACGGAGA TCAACTGGGA CAACCTCGAC ATGACCAAGC TCTATGTGGT GGGGGCCGGC
241 ATGTTCAGCT GCGTGACCGT GGCGCTCTAC CCGGTGTCCG TGATCAAGAC CCGGATGCAG
301 GTTGCCTCCG GGGAGGCCTT GAGGAGGAAC GCCCTGGCCA CCTTCAAGAA CATCCTCAAG
361 GTGGATGGGG TGCCTGGGCT CTACCGAGGG TTTGGGACCG TCATCACCGG GGCTATCCCG
421 GCTAGGATTA TCTTCCTCAC GGCGCTCGAG AAGACAAAGG CGACTTCGCT CAAGCTTGTT
481 GAGCCACTTC AGCTGTCAGA GTCGATGGAG GCTGCCCTTG CTAATGGCCT CGGTGGTTTG
541 ACGGCGTCTC TGTGCTCGCA GGCTGTCTTT GTGCCCATTG ATGTGGTTAG CCAGNNNTTG
601 ATGGTTCAAG GATATTCTGG TCATGTCAGA TA
Predicted gene structure (within gDNA segment 6836 to 9244):
Exon 1 7984 8058 ( 75 n); cDNA 127 203 ( 77 n); score: 0.760
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.79), Pa: 0.581 (s: 0.90)
Exon 2 8339 8720 ( 382 n); cDNA 204 585 ( 382 n); score: 0.830
Intron 2 8721 8848 ( 128 n); Pd: 0.857 (s: 0.78), Pa: 0.962 (s: 0.87)
Exon 3 8849 8895 ( 47 n); cDNA 586 632 ( 47 n); score: 0.872
MATCH 21326110+ TAtuc02-12-22.22955+ 0.818 504 0.797 C
PGS_21326110+_TAtuc02-12-22.22955+ (7984 8058,8339 8720,8849 8895)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGTCGCTCC ---ACCAGAC 8040
|| ||||| ||||| || | ||||||| ||||||||| || || |||| | |||||
TGG-GCGGCG ATGGACACCT CTACTAGGGC GGCCAAGATC CCCTCCCTCC CCCAACAGAC 185
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
|||||||||| ||||||||
GGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 203
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 203
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 203
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 203
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 205
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| |||||||| | | |||||||| |||| |||| ||||||||||
TCGACATGAC CAAGCTCTAT GTGGTGGGGG CCGGCATGTT CAGCTGCGTG ACCGTGGCGC 265
TGTATCCTGT CTCGGTGGTC AAGACCCGGA TGCAGGTTGC CTCTGGGGAC GCCATGAGGA 8460
| || || || || ||| || |||||||||| |||||||||| ||| ||||| ||| ||||||
TCTACCCGGT GTCCGTGATC AAGACCCGGA TGCAGGTTGC CTCCGGGGAG GCCTTGAGGA 325
GGAACGCGCT GGCTACCTTC AAGAACATCC TCAAGATGGA CGGCGTGCCA GGGCTGTACC 8520
||||||| || ||| |||||| |||||||||| ||||| |||| || ||||| ||||| ||||
GGAACGCCCT GGCCACCTTC AAGAACATCC TCAAGGTGGA TGGGGTGCCT GGGCTCTACC 385
GGGGGTTTGC TACCGTTATC ATTGGGGCTG TACCAACTAG GATCATCTTC CTCACAGCGC 8580
| ||||||| ||||| ||| | |||||| | || |||| ||| |||||| ||||| ||||
GAGGGTTTGG GACCGTCATC ACCGGGGCTA TCCCGGCTAG GATTATCTTC CTCACGGCGC 445
TTGAGACAAC CAAAGCAGCC TCGCTTAAGC TTGTTGAGCC -CTTCAAGCT GTCAGAGCCG 8639
| |||| || || || | ||||| |||| |||||||||| |||| |||| ||||||| ||
TCGAGAAGAC AAAGGCGACT TCGCTCAAGC TTGTTGAGCC ACTTC-AGCT GTCAGAGTCG 504
GTGCGGGCTG CCTTTGCCAA TGGCCTTGCT GGTCTGTCAG CGTCTACATG TTCGCAGGCT 8699
|| ||||| || |||| || |||||| | | ||| || | | ||||| || |||||||||
ATGGAGGCTG CCCTTGCTAA TGGCCTCGGT GGTTTGACGG CGTCTCTGTG CTCGCAGGCT 564
ATTTTTGTTC CAATTGATGT GGTATGCCTC TCATGTGCCT TCTATGTGAT GTTGTATAGA 8759
| ||||| | | |||||||| |
GTCTTTGTGC CCATTGATGT G......... .......... .......... .......... 585
GAAAAAATAT CTTACAATAT GTTGATGTTA AATGCTAATT ACAATACTAG ACTACTGTTT 8819
.......... .......... .......... .......... .......... .......... 585
TCATTCTGTT GTGCATTGGA ATGTTTCAGA TTAGCCAGAA ATTGATGGTT CAAGGATATT 8879
|||||||| ||||||||| ||||||||||
.......... .......... .........G TTAGCCAGNN NTTGATGGTT CAAGGATATT 616
CTGGTAATGC CAGATA 8895
||||| ||| ||||||
CTGGTCATGT CAGATA 632
********************************************************************************
EST sequence 144 +strand (File: 16314143+)
1 CAAGACCACC ACGGAAGCGG AGGCGCACCA CCCAGGCGGG CCATTCTCGC CGAGGGCCTC
61 CCCCTCCCCC TCCCCCGGCC GCCGCGCCCT CGCCTCCGGG GATCGCGGGA TTGGGCGGCC
121 ATGGACACCT CTACTAGGGC GGCCAACATC CCCTCCCTGC CCCAACAGAC CGAGATCAAC
181 TGGGACAACC TCGACATGAC CAAGCTCTAT GTGGTTGGGG CCGGCATGTT CAGCTGCGTG
241 ACCGAGGCGC TCTACCCGGG CTCTTGGAAC AAAGACCCGG GTGCAGGTTG CCTCGGGGGA
301 GGCCCTAAGA AGGAACCCCA TGGCCACGAT TTAGAACAAT CCCAAACGTG CATGGGGGCC
361 GAGAGATTTA ACACGGGGTT GGGAGCCCGG CTTGACTGGG GCATTCCCGG CCGGGAAGAT
421 ATTGGGGGAA GAGGGCTTTT GAGACTGGGG CGAATTTGGT GGATCCTGTT CAACCCTTTT
481 AAAAAATAGT GGGGCGTAGG AGGGCGGCAC TTGAGAAAAA ACCCTTGGGA GTTTGCCGGG
541 CGTCGTCGAT TTCGAAAGAG AGGCATCGGG CACCGGGCAC CG
Predicted gene structure (within gDNA segment 6887 to 10188):
Exon 1 7984 8058 ( 75 n); cDNA 112 188 ( 77 n); score: 0.747
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.74), Pa: 0.581 (s: 0.88)
Exon 2 8339 8534 ( 196 n); cDNA 189 386 ( 198 n); score: 0.719
MATCH 21326110+ 16314143+ 0.727 271 0.466 C
PGS_21326110+_16314143+ (7984 8058,8339 8534)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGT--C-GC TCCACCAGAC 8040
|| |||||| ||||| || | ||||||| ||||| ||| || | | || ||| |||||
TGG-GCGGCC ATGGACACCT CTACTAGGGC GGCCAACATC CCCTCCCTGC CCCAACAGAC 170
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
||||||||| ||||||||
CGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 188
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 188
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 188
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 188
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 190
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| ||||| || | | |||||||| |||| |||| |||| |||||
TCGACATGAC CAAGCTCTAT GTGGTTGGGG CCGGCATGTT CAGCTGCGTG ACCGAGGCGC 250
TGTATCCTGT CTCGGTGGTC -AAGACCCGG ATGCAGGTTG CCTCTGGGGA CGCCATGAGG 8459
| || || | ||| | | ||||||||| ||||||||| |||| ||||| ||| | ||
TCTACCCGGG CTCTTGGAAC AAAGACCCGG GTGCAGGTTG CCTCGGGGGA GGCCCTAAGA 310
AGGAACGCGC TGGCTACCTT CAAGAAC-AT CCTCAAGATG GACGGCGTGC CAGGGCTGTA 8518
|||||| | |||| || | ||||| || || || || | || | | || | | ||
AGGAACCCCA TGGCCACGAT TTAGAACAAT CCCAAACGTG CATGGGGGCC GAGAGATTTA 370
CCGGGGGTTT GCTACC 8534
| ||| || | | |
ACACGGGGTT GGGAGC 386
********************************************************************************
EST sequence 5 +strand (File: STtuc02-10-23.8122+)
1 GGAGAAGCAT TATATTGACC ATTTGGTCGG TGCTTTTCCT CCAAGAAACT TCTCCGATTA
61 CAATATTCTT TGTAGACTCT CCATTTTCCA ATTTGTTTTG CAAAATTTGC TGCCAAAAAA
121 AATAACGACT TGCTTTCTTT CATATTAGCC GAGCTAGGGT TTTGAACAGT TGTATTTTTA
181 ATGGAGGTTG CTGGATCTAC AAGGAAGCCA TTTCAACAAA CCGAGATTAA CTGGGACAAG
241 CTTGATAAGA CTAGGTTCTA TGTCGTAGGA GCTGGGATAT TTACAGGGCT TACTGTTGCA
301 CTATACCCCA TTTCTGTCAT CAAGACTAGA ATGCAGGTGG CAACCAATAA TGCTGCAAAC
361 GAGAGTGCAT TTTCTGTTGT CAGGGGCCTA GTGCGAAATG ATGGCATTCC CGGTTTATAT
421 AGAGGTTTTG GAACTGTCAT TACAGGGGCG GTTCCTGCCA GAATTATATT TCTCACAGCA
481 CTAGAGACCA CTAAGGTGAC TGCATTTAAG ATGGTTGAAC CGTTCAAACT ATCAGAACCT
541 GTACAGGCAG CTATAGCAAA TGGTGTTGCT GGCATGCTGG CGTCTCTTTG TTCACAATCT
601 GTCTTTGTTC CAATTGACAT AGTTAGTCAA AGGTTAATGG TGCAAGGATA CTCAAGACAT
661 GCAAGCTACA ATGGAGGCTT GGATGTTGCT CGCAAAGTTC TGAAGTCAGA AAGTATTCGT
721 GGACTATATA GAGGATTCAG TCTATCTGTT CTAACATACT CCCCATCCAG TGCTGTATGG
781 TGGGCAAGTT ATGGTTCGAG CCAGCGCTTC ATTTGGAGCA AGCTCTTGGA TAATGGAACT
841 GAGCATGGTG GGCCTGCTCC CAGCCAGGGG AAAATAGTCT CAGTTCAAGC TGCTGGTGGG
901 ATCATTGCCG GTGCTACTGC ATCTTGCATA ACAACTCCAT TGGACACCAT TAAAACTCGG
961 TTGCAGGTGA TGGGACACGA CAAGAGACCT ACTGCACGGC AAGTAGTTAA GCAGCTAATT
1021 GCCGAGGATG GTTGGACAGG ATTTTACAGG GGATTAGGTC CAAGATTTGT CAGCATGTCA
1081 GCGTGGGGAA CCTCCATGAT ACTTGCCTAT GAATATCTCA AGCGCTTGTG TGCAGTAAAC
1141 GAATAGATTG ATGAAAGCTA GCTGCCAGAC GACTCTTGCG GTAGGGTTTT TATACTACTG
1201 ACATACAGTA TTGAGAGCTG GAGATAACAA GACCGCGGCT GATTAGCTGT CTGTATACAA
1261 ATGACACTAT GACGGTGTTG TATGAGTTGA CTTGGAATCC AAGTACCTGG CCAAAATACA
1321 ATTAATTTTC TTAGGGATTT CTCACAATAT TCTTAAATGA TTTTTGCCAG ATAAATGCTA
1381 CATTCATTGG TTGTAGTGAG TCGCTACAAG GAGGACGAAG GACGTATCCT TGAATAATTT
1441 TTGCCAGATA ATAAATGTAA AATGTAATAT TCATTCATAC AAGAATAGAT AAATGCTTGA
1501 TCAACTTCAT TTTTC
Predicted gene structure (within gDNA segment 6608 to 13557):
Exon 1 8036 8058 ( 23 n); cDNA 217 239 ( 23 n); score: 0.870
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0), Pa: 0.581 (s: 0.64)
Exon 2 8339 8720 ( 382 n); cDNA 240 621 ( 382 n); score: 0.626
Intron 2 8721 8848 ( 128 n); Pd: 0.857 (s: 0.68), Pa: 0.962 (s: 0.72)
Exon 3 8849 9045 ( 197 n); cDNA 622 818 ( 197 n); score: 0.761
Intron 3 9046 9437 ( 392 n); Pd: 0.980 (s: 0.92), Pa: 0.936 (s: 0.45)
Exon 4 9438 9477 ( 40 n); cDNA 819 855 ( 37 n); score: 0.450
Intron 4 9478 9728 ( 251 n); Pd: 0.869 (s: 0.45), Pa: 0.000 (s: 0.68)
Exon 5 9729 9839 ( 111 n); cDNA 856 966 ( 111 n); score: 0.667
Intron 5 9840 10515 ( 676 n); Pd: 0.994 (s: 0.62), Pa: 1.000 (s: 0.56)
Exon 6 10516 10669 ( 154 n); cDNA 967 1120 ( 154 n); score: 0.701
Intron 6 10670 11329 ( 660 n); Pd: 0.961 (s: 0.74), Pa: 0.992 (s: 0)
Exon 7 11330 11355 ( 26 n); cDNA 1121 1146 ( 26 n); score: 0.731
Intron 7 11356 13309 (1954 n); Pd: 0.741 (s: 0), Pa: 0.727 (s: 0)
Exon 8 13310 13315 ( 6 n); cDNA 1147 1152 ( 6 n); score: 0.667
MATCH 21326110+ STtuc02-10-23.8122+ 0.677 939 0.620 C
PGS_21326110+_STtuc02-10-23.8122+ (8036 8058,8339 8720,8849 9045,9438 9477,9729 9839,10516 10669,11330 11355,13310 13315)
Alignment (genomic DNA sequence = upper lines):
CAGACGGAGA TCAACTGGGA CAAGTAAGCA ACCCACCGGT CTTGTAATCC TTAGGTTCCC 8095
|| || |||| | |||||||| |||
CAAACCGAGA TTAACTGGGA CAA....... .......... .......... .......... 239
ATTTCGTGCC GATTTCCGCC TTTCTCGCGG TCCTAGTCTT CTAGAAATTT AGCTCCGATC 8155
.......... .......... .......... .......... .......... .......... 239
GTTGAACTGT GTCCCCCGCC CTATTCCGGA TTGGCTTTAC CGCCTTAGGA TTAGGAACTG 8215
.......... .......... .......... .......... .......... .......... 239
TTGTTTGAGG ATTTGACATG GCTGTTCATG CTCCTGGACG AAGCGCAATT TGGGGATTCG 8275
.......... .......... .......... .......... .......... .......... 239
TAGCTTATTC CGTTGTTTCC GATTCTTTTA CTGTTCTCAA ATCGTGGCGC TGAAATGTTG 8335
.......... .......... .......... .......... .......... .......... 239
CAGCCTCGAC AAGACCAAGC TCTACGTGGT GGGCGCAGGC ATGTTCAGCG GCGTCACCGT 8395
|| || ||||| | | |||| || || || || || || || | | | | || ||
...GCTTGAT AAGACTAGGT TCTATGTCGT AGGAGCTGGG ATATTTACAG GGCTTACTGT 296
GGCGCTGTAT CCTGTCTCGG TGGTCAAGAC CCGGATGCAG GTTGCCTCTG GGGACGCCAT 8455
|| || || || | || | | ||||||| | |||||| || || | | ||
TGCACTATAC CCCATTTCTG TCATCAAGAC TAGAATGCAG GTGGCAACCA ATAATGCTGC 356
GAGGAGGAAC GCGCTGGCTA CCTTCAAGAA CATCCT-CAA GATGGACGGC GTGCCAGGGC 8514
| || || | || ||| | | | | | | || || ||| | || ||
AAACGAGAGT GCATTTTCTG TTGTCAGGGG CCTAGTGCGA AAT-GATGGC ATTCCCGGTT 415
TGTACCGGGG GTTTGCTACC GTTATCATTG GGGCTGTACC AACTAGGATC ATCTTCCTCA 8574
| || | || |||| || || || | | |||| || || | || || || || ||||
TATATAGAGG TTTTGGAACT GTCATTACAG GGGCGGTTCC TGCCAGAATT ATATTTCTCA 475
CAGCGCTTGA GACAACCAAA GCAGCCTCGC TTAAGCTTGT TGAGCCCTTC AAGCTGTCAG 8634
|||| || || ||| || || | | | ||||| | || ||| || ||| || || ||||
CAGCACTAGA GACCACTAAG GTGACTGCAT TTAAGATGGT TGAACCGTTC AAACTATCAG 535
AGCCGGTGCG GGCTGCCTTT GCCAATGGCC TTGCTGGTCT GTCAGCGTCT ACATGTTCGC 8694
| || || | ||| || | || ||||| ||||||| | | |||||| ||||| |
AACCTGTACA GGCAGCTATA GCAAATGGTG TTGCTGGCAT GCTGGCGTCT CTTTGTTCAC 595
AGGCTATTTT TGTTCCAATT GATGTGGTAT GCCTCTCATG TGCCTTCTAT GTGATGTTGT 8754
| || | || |||||||||| || |
AATCTGTCTT TGTTCCAATT GACATA.... .......... .......... .......... 621
ATAGAGAAAA AATATCTTAC AATATGTTGA TGTTAAATGC TAATTACAAT ACTAGACTAC 8814
.......... .......... .......... .......... .......... .......... 621
TGTTTTCATT CTGTTGTGCA TTGGAATGTT TCAGATTAGC CAGAAATTGA TGGTTCAAGG 8874
|||| || | || | |||| |||||
.......... .......... .......... ....GTTAGT CAAAGGTTAA TGGTGCAAGG 647
ATATTCTGGT AATGCCAGAT ACAAAGGTGG ATTAGATGTT GCTCGAAAGG TCATAAAGGC 8934
||| || | |||| || | |||| || || || |||||| ||||| || | | | ||| |
ATACTCAAGA CATGCAAGCT ACAATGGAGG CTTGGATGTT GCTCGCAAAG TTCTGAAGTC 707
TGATGGCATT AGGGGGCTGT ACAGAGGATT TGGACTGTCT GTTATGACCT ATGCTCCATC 8994
|| | ||| | || || | | |||||||| | || ||| ||| | || | | | |||||
AGAAAGTATT CGTGGACTAT ATAGAGGATT CAGTCTATCT GTTCTAACAT ACTCCCCATC 767
CAGTGCTGTG TGGTGGGCAA GTTATGGTTC CAGCCAGCGC ATAATTTGGA GGTTAGCTTA 9054
||||||||| |||||||||| |||||||||| ||||||||| | ||||||| |
CAGTGCTGTA TGGTGGGCAA GTTATGGTTC GAGCCAGCGC TTCATTTGGA G......... 818
TCTGATTGGT TCATCGTTAT GTTCCTCTCA GCCCTGTGTA CTATGTAATA TTTACGAGAA 9114
.......... .......... .......... .......... .......... .......... 818
AAAGACCAGT AATACATTTC TACTTAATAG TTATTTGAAT TGGTACTTTC CATCTGTCCA 9174
.......... .......... .......... .......... .......... .......... 818
AAACCTTTTC AAACTTCCCC TCTTGATGCT CAAACTGCAG CTATAATTGC AATTTTGTTT 9234
.......... .......... .......... .......... .......... .......... 818
TCTGATGCTT GTTCTTCCAT GTCAATATGT ACATATCTTT TTTAGAAAAC AAGAATGCAT 9294
.......... .......... .......... .......... .......... .......... 818
CTCAATGCAT GTGCTGTATT GTTTTGATTA GATTTATCAT AGCGATCAAT CACATTTTCT 9354
.......... .......... .......... .......... .......... .......... 818
TTACAGATAA AAATAGTCGG AAGGATAAGT TGGATAACTG ACCAAAGTGG AAATATGATC 9414
.......... .......... .......... .......... .......... .......... 818
TTACATATTT TTATCTCTGG CAGCTTAGAG AACTT-AATT ACCAACCTGA AACAATGTGA 9473
| | || ||| || | | ||| | || |||
.......... .......... ...C--A-AG CTCTTGGATA ATGGAACTG- AGCATGGTGG 851
TGAAGTAACT ACACAAAACC ACATATAGTT TCATGCACTC TGCAAAACTA AATTGAAACT 9533
GCCT...... .......... .......... .......... .......... .......... 855
CTTAGTGTGC TCTTAATGCT GTTAAGAGGG TGTATGCAAG TTTACTGGAA TCAGTACCTT 9593
.......... .......... .......... .......... .......... .......... 855
TTGTTAGTTT ATTTCTTTGT GGTTGATGGT TGAAAGATTA TATTTCTTGT CTTGATAACT 9653
.......... .......... .......... .......... .......... .......... 855
TAGCCAAAAT AGTTAACTAT TGTGCTTTTT ACATATTGGA ACAGTGCTCT TGGCCATTTG 9713
.......... .......... .......... .......... .......... .......... 855
CATGACAAAG AAGAGGCTCC TAGCCAATTG AAACTAGTTG GTGTTCAAGC ATCAGGGGGG 9773
||||| ||||| | ||| |||| |||||||| | || |||
.......... .....GCTCC CAGCCAGGGG AAAATAGTCT CAGTTCAAGC TGCTGGTGGG 900
GTTTTTGCCG GTGCCGTGAC CTCTTTTGTT ACGACTCCCA TAGATACAAT AAAGACCAGG 9833
| |||||| |||| | |||| | || ||||| | || || || || || ||
ATCATTGCCG GTGCTACTGC ATCTTGCATA ACAACTCCAT TGGACACCAT TAAAACTCGG 960
CTGCAGGTAC TGTGTGACAT TCTGTTTGCT GATTACTCTT GTAATTTGAT TTGTGTGGGT 9893
|||||
TTGCAG.... .......... .......... .......... .......... .......... 966
ATATTTTGTG AGGCTTACCC TTGTGACTTA ATGATTCTTG TCTTTACATT TATGCTGCTC 9953
.......... .......... .......... .......... .......... .......... 966
ATTTGCAATA ATTTGATTCC TTATCAATGC AATGCCACTA AGTTTAGGGG AATGGATATT 10013
.......... .......... .......... .......... .......... .......... 966
TTGTTTTGGA AGTATATTTG ATGTCAGACT TGAAGACCTA AATGTTCTTT TATACTGATA 10073
.......... .......... .......... .......... .......... .......... 966
TTTCCTCCAA TGGCGGGCTA TTGAGGTGCT GGACTGGAAT GCTGTCTATA TTAAACAATA 10133
.......... .......... .......... .......... .......... .......... 966
TATACTTCTA TGTTTACAGC TGTTTGTTTT CTGCTGACAT ACCATGACCA ATTTGTCATG 10193
.......... .......... .......... .......... .......... .......... 966
GTTTCAGTTA TGAGGTCAGA AAAAAAGAAA CTTCCATTGG GAAAACTTGA TATCTATTAC 10253
.......... .......... .......... .......... .......... .......... 966
TTCATTATTT ATAGTGAGTA ACAAAAGTTA GCACTTTCAA ACTGACTAAA GTATGCCAGG 10313
.......... .......... .......... .......... .......... .......... 966
GACGTATCAT GCATTTTACA ACATGCTCCA CATATCTCCA AATATCACAT ATTACGCTTG 10373
.......... .......... .......... .......... .......... .......... 966
TAGTGGTAAA CTGATAATAC ATCTACCAAC ACTGAAAGTT CTCACAAGTC AGAACCCTAT 10433
.......... .......... .......... .......... .......... .......... 966
ATTTGACAGT TGTGGTCTCC CTCCTTCCCT CTGCATTTGT TGCTACAGAT GATTACACTG 10493
.......... .......... .......... .......... .......... .......... 966
AGTTTTGTTT CTTGTCATTT AGGTTATGGA TAATGAAAAT AAGCCAAAAG CCAGGGAAGT 10553
|| |||| | || || | || | | | || ||||
.......... .......... ..GTGATGGG ACACGACAAG AGACCTACTG CACGGCAAGT 1004
TGTCAAAAGA TTGATTGCTG AAGATGGATG GAAAGGTTTG TACAGAGGGT TGGGTCCAAG 10613
|| || | ||||| | | ||||| || || ||| || ||||| || | | ||||||||
AGTTAAGCAG CTAATTGCCG AGGATGGTTG GACAGGATTT TACAGGGGAT TAGGTCCAAG 1064
ATTTTTCAGC TCATCAGCTT GGGGAACCTC AATGATAGTA TGCTACGAGT ACCTGAGTAT 10673
|||| ||||| ||||| | |||||||||| |||||| | ||| || | | || |
ATTTGTCAGC ATGTCAGCGT GGGGAACCTC CATGATACTT GCCTATGAAT ATCTCA.... 1120
GTTTCGTCTT CCCTTGTCAA ATGTACACAT GCATATGTAG TGTTATATAT CACTGCATCC 10733
.......... .......... .......... .......... .......... .......... 1120
CATGCAGGTT AATTTTAAGT ACCCAGATAC TTCTTCTCAT TTAGAATTTA GTTAAAATGA 10793
.......... .......... .......... .......... .......... .......... 1120
CATCATTCAG GTCAGTTGGC ATCTCCAGTA CACTGCTTTT GTAAGTTGTA TCATAAATCC 10853
.......... .......... .......... .......... .......... .......... 1120
CATTTGCAAT GAAATTTTTG ACTCAAGTTG CAGCCTGTAA CTTTTCTATA TTTTTCGAAT 10913
.......... .......... .......... .......... .......... .......... 1120
AAAGCTATCA CCGTACATGA AACCTGCTTC TGTTAATGCC AAGGAGCGCA CATTATTTCC 10973
.......... .......... .......... .......... .......... .......... 1120
TGTAGACCGG CTTGGATGTT GAACAATTGG CACATGCAAG TAGCAAAGAG CAGCCTTGTG 11033
.......... .......... .......... .......... .......... .......... 1120
CTTGCAACAA TCTGGTCCAC CTGTGGATAT GTTCGCTGTG AAAGAAACCA ATTAGTCCTT 11093
.......... .......... .......... .......... .......... .......... 1120
GTATGAAACA TGGTATTAGC GCTTCATGAA TAAAACCACT GATTCTGATT TCTTATTTTC 11153
.......... .......... .......... .......... .......... .......... 1120
AATGAATGGA TGGGCATTAC CAAAGTTATC ATGATTAAAG ATCTATTTCA TATAAGTTTA 11213
.......... .......... .......... .......... .......... .......... 1120
TTTTTATACA TTAGAGTTTA TTTAGAGAAC AAGGTATATT TAGTTTTGGT AATTTTGTGA 11273
.......... .......... .......... .......... .......... .......... 1120
ACTGCACTCA GACGACTTTG GTATTCTTAC TGTAATTTTG TTTTGTTTTC CTACAGAGCG 11333
||||
.......... .......... .......... .......... .......... ......AGCG 1124
CTTGTGTGCT AAAGTTGAAG AGGTCTGATT TCTGAGCTGC CTTAAACTCA GAACGCAATT 11393
||||||||| | ||| ||
CTTGTGTGCA GTAAACGAAT AG........ .......... .......... .......... 1146
CCTACAATTC TGGAAGTTTT GTATTAGCAG AAGTGTAATA ATGCTGTACA CCAACGGAAG 11453
.......... .......... .......... .......... .......... .......... 1146
CTTCAGTTCT TGCTGACATA GGTGAAAGTA TTAAACATGG ATGTTTGATG GTGTTAAAGA 11513
.......... .......... .......... .......... .......... .......... 1146
CGTCATTTGA TGCTAGACAA TAGTCCTTAC AAACTTTGGT TCTCTGAGCA GAGTATTCTC 11573
.......... .......... .......... .......... .......... .......... 1146
AAAAAAATGC AGGGGCCTAT ATTTTTTTTT GCCTCTTATG CTGAATATGG ATTAGGCTGA 11633
.......... .......... .......... .......... .......... .......... 1146
TCATTTTAGA TGAATATAAA CGAGATCAGA TGTACACATT TATCATTCTT TTATACGTGA 11693
.......... .......... .......... .......... .......... .......... 1146
AGGCTTGTTT TAGCGAGGCT GGATGATTGA GACCAGTTGT AATGACATGG TACAATGTTT 11753
.......... .......... .......... .......... .......... .......... 1146
CCAGGAGATG CTGTTTTGAC TCTTCTTTTC ATGCGGTTTC AATTATCTTT TTGCCCTTGT 11813
.......... .......... .......... .......... .......... .......... 1146
TGGAATGCAA AAATGTCGAA CACGTTGCTG CCCACTGAGA AGCAAATCAT AGTATGTATG 11873
.......... .......... .......... .......... .......... .......... 1146
ATGCTTAAGC AAACTGGGAA ACGCTTTCTG AGAGACGATA ACCCATTCGT TTGACCCTTT 11933
.......... .......... .......... .......... .......... .......... 1146
ATTATGTTCA TTGCTATCTT GCTGGTATGA TGCCGTTTGG GTGTCCTGGA CATTATGCAT 11993
.......... .......... .......... .......... .......... .......... 1146
TTATGCGTTT AGTTTGGTGG TCAAACTACA GTCAAATGTC GTGATACCTA TTCCAGATTC 12053
.......... .......... .......... .......... .......... .......... 1146
TGGGCGTGAT ACCATTTTCA GCTCTGCAGC GTTCATGGTG ATCAAAATCG CTGATTTTGG 12113
.......... .......... .......... .......... .......... .......... 1146
GAAATGGGTT GCGATGGAGG CACAAACGTA TTTTCTTCTT CAAATCAAAA TAAGATCACT 12173
.......... .......... .......... .......... .......... .......... 1146
TCTCCTAAAC TTTAGGATAA ATGTTGTAGC GCTTTATAAG TTTCACATGA GGAATATAAA 12233
.......... .......... .......... .......... .......... .......... 1146
TTTTGTAATT TCTTCCAAGA CATCCATTTT AAGTGGTTCT TTTATTGGGA TTTCCCACTA 12293
.......... .......... .......... .......... .......... .......... 1146
TAAATATTGT CATTCCCTGA GACGTTGCCC GGGGTCCACT CCAAGAAAGG ACAGGAGCTT 12353
.......... .......... .......... .......... .......... .......... 1146
GCTAGTCTTC TTCAGCTTCA GTCCAGTCAC AACTGAATCC GCCGCGCAAG GCATCCAAGG 12413
.......... .......... .......... .......... .......... .......... 1146
ATTTGTTCGT CCTTCGGAGG GTGGGGAATC GAAGCGACGA AAACGAAGCA ATGAACGAGG 12473
.......... .......... .......... .......... .......... .......... 1146
CGGTGCAGGA GGCGAAGCTG CTGCGGCAGG TGAACGCGCT CATCGTGGCG CACCTCCGTA 12533
.......... .......... .......... .......... .......... .......... 1146
GCCAGAACCT CGGGCAGGCC GCAGCCGCCG TCGCCGCCGC CACCATGACC CCCATCTCCG 12593
.......... .......... .......... .......... .......... .......... 1146
CCGCCGAATC CGTCCCCGCA AATCAACTCC TACGTCTCGT GGCCAAGGTC CCCCCACTTT 12653
.......... .......... .......... .......... .......... .......... 1146
CCCCTTCCTC CGGCAGTCTG GCCTAGGATT TGTTCTGCAC GGGCCTAAAC CCTCACTGTT 12713
.......... .......... .......... .......... .......... .......... 1146
GGTTCGCAGG GCCTCGCGGC GGAGGGCGGA GGAGGAGCCG CTTCCGCATT CGACTCCGCC 12773
.......... .......... .......... .......... .......... .......... 1146
GGGTTCGGTG GGGCGGTGCA GCCGCTCGGC TCCAGTGCCG TGGATTTCAG GTAAACCCCA 12833
.......... .......... .......... .......... .......... .......... 1146
ACCTTGCGCC CCCGCGGTGT TGCCTAGTGG CAGTGTTTTT TCTGGTGCTG AACATTGGTG 12893
.......... .......... .......... .......... .......... .......... 1146
AGGAGTGTTG ACGCCGGTGC TGTGTAGTAT GCAGGATGTC AAGGGCTCAT CCAAGAGCTT 12953
.......... .......... .......... .......... .......... .......... 1146
CCCCAAGCAC GAGGCGAAGC ATGTCTCTGA CCATAAGGTG CTTATGATTC CAATTTTCCC 13013
.......... .......... .......... .......... .......... .......... 1146
TTGCAAATGC ACCACTTGAA AGTTGAAACA ATTTTTGTGT CAGACTCCTG TTTATCTGAA 13073
.......... .......... .......... .......... .......... .......... 1146
TATTTACTAC TGCTATTGCA CATTTTGCAC TTATCACAGT ACCATGATTA TGTAGACAAC 13133
.......... .......... .......... .......... .......... .......... 1146
TTGGGATTGA CCAACAATAG ATTTTACTGA TGTTTATTGG CTTACCATTG CATTTTTCTG 13193
.......... .......... .......... .......... .......... .......... 1146
TAGAACGCTG CCCGGTGTGC GAAATTTAGT CCTGATGGGA AGTATTTTGC AACTGGGAGT 13253
.......... .......... .......... .......... .......... .......... 1146
GCTGATACAT CCATTAAGTT TTTTGAGGTG AACTTGAAAT TTGAATTGCC ACTCAGGTTG 13313
|||
.......... .......... .......... .......... .......... ......ATTG 1150
CT 13315
|
AT 1152
********************************************************************************
EST sequence 158 +strand (File: LEtuc02-10-21.10328+)
1 GGAGAAGCAT TATATTGACC ATTTGGTCGG TGCTTTTCCT CCAAGAAACT TCTCCGATTA
61 CTCTCCATTT GCAAAATTTA ACGACTTGCT TATAAGCCGA GTTAGGGTTT TGAACAGTTG
121 TAATTTTTTT TAATGGAGGT TGCTGGATCT ACAAGGAAGC CATTTCAACA AACCGAGATT
181 AACTGGGACA AGCTTGATAA GACTAGGTTC TATGTCGTAG GAGCTGGGAT ATTTACAGGG
241 CTTACTGTTG CACTATACCC CATTTCTGTC ATCAAGACTA GAATGCAGGT GGCAACCAAT
301 AATGCTGCAA AAGAGAGTGC ATTTTCTGTT GTCAGGGGCC TAGTGCGAAA TGATGGTATT
361 CCCGGTTTAT ATAGAGGATT TGGAACTGTC ATTACAGGGG CGGTTCCTGC CAGAATTATA
421 TTTCTCACAG CACTAGAGAC CACTAAGGTG ACTGCATTTA AGATGGTGGA ACCATTCAAG
481 CTATCAGAAC CTGTACAGGC AGCTATAGCA AATGGTGTTG CTGGCATGCT GGCGTCTCTT
541 TGTTCACAAT CCGTCTTTGT TCCAATTGAC ATAGTTAGTC AAAGGTTAAT GGTGCAAGGA
601 TACTCAGGAC ATGCAAGCTA CAATGGAGGC TTGGATGTTG CTCGCAAAGT TCTGAAGTCA
661 GAAGGTATAC GTGGACTATA TAGAGGATTC AGTCTGTCTG TTCTAACATA CTCCCCATCC
721 AGTGCTGTAT GGTGGGCAAG TTATGGTTCG AGCCAGCGCT TCATATGGAG CAAGCTCTTG
781 GATAATGGAA CTGAGCATGG TGGGCCTGCT CCCAGCCAGG GGAAAATAGT GTCAGTTCAA
841 GCTGCTGGTG GGATCATCGC CGGTGCTACT GCATCTTGCA TAACAACTCC ATTGGACACC
901 ATTAAAACTA GGTTGCAGGT GATGGGACAC GATAAGAGAC CTAGTGCAGG GCAAGTAGTT
961 AAGCAGCTAA TTGCTGAGGA TGGTTGGACA GGATTTTACA GGGGATTAGG TCCAAGATTT
1021 GTCAGCATGT CAGCGTGGGG AACCTCCATG ATACTTGCCT ATGAATATCT CAAGCGCTTG
1081 TGTGCAGTAA ACGAATAGAT TGATGAAAGC TAGCTGCCAG ACGACTCTTG CGGTAGGATT
1141 TTTATACTAC TGACATACAG TATTTGAGAG CTGGAGATAA CAAGACCGCG GCTGATTAGC
1201 TGTCTGTATA CAAATGACAC TATGACTGTT ATATGAGTTG ACTTGGAATC CAAGTACCTG
1261 GCCAAAATAC AATTAATT
Predicted gene structure (within gDNA segment 6848 to 12612):
Exon 1 8036 8058 ( 23 n); cDNA 169 191 ( 23 n); score: 0.870
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0), Pa: 0.581 (s: 0.64)
Exon 2 8339 8720 ( 382 n); cDNA 192 573 ( 382 n); score: 0.620
Intron 2 8721 8848 ( 128 n); Pd: 0.857 (s: 0.66), Pa: 0.962 (s: 0.74)
Exon 3 8849 9045 ( 197 n); cDNA 574 770 ( 197 n); score: 0.766
Intron 3 9046 9437 ( 392 n); Pd: 0.980 (s: 0.90), Pa: 0.936 (s: 0.45)
Exon 4 9438 9477 ( 40 n); cDNA 771 807 ( 37 n); score: 0.450
Intron 4 9478 9728 ( 251 n); Pd: 0.869 (s: 0.45), Pa: 0.000 (s: 0.68)
Exon 5 9729 9839 ( 111 n); cDNA 808 918 ( 111 n); score: 0.667
Intron 5 9840 10515 ( 676 n); Pd: 0.994 (s: 0.64), Pa: 1.000 (s: 0.56)
Exon 6 10516 10669 ( 154 n); cDNA 919 1072 ( 154 n); score: 0.708
Intron 6 10670 11329 ( 660 n); Pd: 0.961 (s: 0.74), Pa: 0.992 (s: 0)
Exon 7 11330 11355 ( 26 n); cDNA 1073 1098 ( 26 n); score: 0.731
MATCH 21326110+ LEtuc02-10-21.10328+ 0.677 933 0.730 C
PGS_21326110+_LEtuc02-10-21.10328+ (8036 8058,8339 8720,8849 9045,9438 9477,9729 9839,10516 10669,11330 11355)
Alignment (genomic DNA sequence = upper lines):
CAGACGGAGA TCAACTGGGA CAAGTAAGCA ACCCACCGGT CTTGTAATCC TTAGGTTCCC 8095
|| || |||| | |||||||| |||
CAAACCGAGA TTAACTGGGA CAA....... .......... .......... .......... 191
ATTTCGTGCC GATTTCCGCC TTTCTCGCGG TCCTAGTCTT CTAGAAATTT AGCTCCGATC 8155
.......... .......... .......... .......... .......... .......... 191
GTTGAACTGT GTCCCCCGCC CTATTCCGGA TTGGCTTTAC CGCCTTAGGA TTAGGAACTG 8215
.......... .......... .......... .......... .......... .......... 191
TTGTTTGAGG ATTTGACATG GCTGTTCATG CTCCTGGACG AAGCGCAATT TGGGGATTCG 8275
.......... .......... .......... .......... .......... .......... 191
TAGCTTATTC CGTTGTTTCC GATTCTTTTA CTGTTCTCAA ATCGTGGCGC TGAAATGTTG 8335
.......... .......... .......... .......... .......... .......... 191
CAGCCTCGAC AAGACCAAGC TCTACGTGGT GGGCGCAGGC ATGTTCAGCG GCGTCACCGT 8395
|| || ||||| | | |||| || || || || || || || | | | | || ||
...GCTTGAT AAGACTAGGT TCTATGTCGT AGGAGCTGGG ATATTTACAG GGCTTACTGT 248
GGCGCTGTAT CCTGTCTCGG TGGTCAAGAC CCGGATGCAG GTTGCCTCTG GGGACGCCAT 8455
|| || || || | || | | ||||||| | |||||| || || | | ||
TGCACTATAC CCCATTTCTG TCATCAAGAC TAGAATGCAG GTGGCAACCA ATAATGCTGC 308
GAGGAGGAAC GCGCTGGCTA CCTTCAAGAA CATCCT-CAA GATGGACGGC GTGCCAGGGC 8514
| || || | || ||| | | | | | | || || || | || ||
AAAAGAGAGT GCATTTTCTG TTGTCAGGGG CCTAGTGCGA AAT-GATGGT ATTCCCGGTT 367
TGTACCGGGG GTTTGCTACC GTTATCATTG GGGCTGTACC AACTAGGATC ATCTTCCTCA 8574
| || | || |||| || || || | | |||| || || | || || || || ||||
TATATAGAGG ATTTGGAACT GTCATTACAG GGGCGGTTCC TGCCAGAATT ATATTTCTCA 427
CAGCGCTTGA GACAACCAAA GCAGCCTCGC TTAAGCTTGT TGAGCCCTTC AAGCTGTCAG 8634
|||| || || ||| || || | | | ||||| | || || || ||| ||||| ||||
CAGCACTAGA GACCACTAAG GTGACTGCAT TTAAGATGGT GGAACCATTC AAGCTATCAG 487
AGCCGGTGCG GGCTGCCTTT GCCAATGGCC TTGCTGGTCT GTCAGCGTCT ACATGTTCGC 8694
| || || | ||| || | || ||||| ||||||| | | |||||| ||||| |
AACCTGTACA GGCAGCTATA GCAAATGGTG TTGCTGGCAT GCTGGCGTCT CTTTGTTCAC 547
AGGCTATTTT TGTTCCAATT GATGTGGTAT GCCTCTCATG TGCCTTCTAT GTGATGTTGT 8754
| | | || |||||||||| || |
AATCCGTCTT TGTTCCAATT GACATA.... .......... .......... .......... 573
ATAGAGAAAA AATATCTTAC AATATGTTGA TGTTAAATGC TAATTACAAT ACTAGACTAC 8814
.......... .......... .......... .......... .......... .......... 573
TGTTTTCATT CTGTTGTGCA TTGGAATGTT TCAGATTAGC CAGAAATTGA TGGTTCAAGG 8874
|||| || | || | |||| |||||
.......... .......... .......... ....GTTAGT CAAAGGTTAA TGGTGCAAGG 599
ATATTCTGGT AATGCCAGAT ACAAAGGTGG ATTAGATGTT GCTCGAAAGG TCATAAAGGC 8934
||| || || |||| || | |||| || || || |||||| ||||| || | | | ||| |
ATACTCAGGA CATGCAAGCT ACAATGGAGG CTTGGATGTT GCTCGCAAAG TTCTGAAGTC 659
TGATGGCATT AGGGGGCTGT ACAGAGGATT TGGACTGTCT GTTATGACCT ATGCTCCATC 8994
|| || || | || || | | |||||||| | |||||| ||| | || | | | |||||
AGAAGGTATA CGTGGACTAT ATAGAGGATT CAGTCTGTCT GTTCTAACAT ACTCCCCATC 719
CAGTGCTGTG TGGTGGGCAA GTTATGGTTC CAGCCAGCGC ATAATTTGGA GGTTAGCTTA 9054
||||||||| |||||||||| |||||||||| ||||||||| | || |||| |
CAGTGCTGTA TGGTGGGCAA GTTATGGTTC GAGCCAGCGC TTCATATGGA G......... 770
TCTGATTGGT TCATCGTTAT GTTCCTCTCA GCCCTGTGTA CTATGTAATA TTTACGAGAA 9114
.......... .......... .......... .......... .......... .......... 770
AAAGACCAGT AATACATTTC TACTTAATAG TTATTTGAAT TGGTACTTTC CATCTGTCCA 9174
.......... .......... .......... .......... .......... .......... 770
AAACCTTTTC AAACTTCCCC TCTTGATGCT CAAACTGCAG CTATAATTGC AATTTTGTTT 9234
.......... .......... .......... .......... .......... .......... 770
TCTGATGCTT GTTCTTCCAT GTCAATATGT ACATATCTTT TTTAGAAAAC AAGAATGCAT 9294
.......... .......... .......... .......... .......... .......... 770
CTCAATGCAT GTGCTGTATT GTTTTGATTA GATTTATCAT AGCGATCAAT CACATTTTCT 9354
.......... .......... .......... .......... .......... .......... 770
TTACAGATAA AAATAGTCGG AAGGATAAGT TGGATAACTG ACCAAAGTGG AAATATGATC 9414
.......... .......... .......... .......... .......... .......... 770
TTACATATTT TTATCTCTGG CAGCTTAGAG AACTT-AATT ACCAACCTGA AACAATGTGA 9473
| | || ||| || | | ||| | || |||
.......... .......... ...C--A-AG CTCTTGGATA ATGGAACTG- AGCATGGTGG 803
TGAAGTAACT ACACAAAACC ACATATAGTT TCATGCACTC TGCAAAACTA AATTGAAACT 9533
GCCT...... .......... .......... .......... .......... .......... 807
CTTAGTGTGC TCTTAATGCT GTTAAGAGGG TGTATGCAAG TTTACTGGAA TCAGTACCTT 9593
.......... .......... .......... .......... .......... .......... 807
TTGTTAGTTT ATTTCTTTGT GGTTGATGGT TGAAAGATTA TATTTCTTGT CTTGATAACT 9653
.......... .......... .......... .......... .......... .......... 807
TAGCCAAAAT AGTTAACTAT TGTGCTTTTT ACATATTGGA ACAGTGCTCT TGGCCATTTG 9713
.......... .......... .......... .......... .......... .......... 807
CATGACAAAG AAGAGGCTCC TAGCCAATTG AAACTAGTTG GTGTTCAAGC ATCAGGGGGG 9773
||||| ||||| | ||| |||| |||||||| | || |||
.......... .....GCTCC CAGCCAGGGG AAAATAGTGT CAGTTCAAGC TGCTGGTGGG 852
GTTTTTGCCG GTGCCGTGAC CTCTTTTGTT ACGACTCCCA TAGATACAAT AAAGACCAGG 9833
| | |||| |||| | |||| | || ||||| | || || || || || |||
ATCATCGCCG GTGCTACTGC ATCTTGCATA ACAACTCCAT TGGACACCAT TAAAACTAGG 912
CTGCAGGTAC TGTGTGACAT TCTGTTTGCT GATTACTCTT GTAATTTGAT TTGTGTGGGT 9893
|||||
TTGCAG.... .......... .......... .......... .......... .......... 918
ATATTTTGTG AGGCTTACCC TTGTGACTTA ATGATTCTTG TCTTTACATT TATGCTGCTC 9953
.......... .......... .......... .......... .......... .......... 918
ATTTGCAATA ATTTGATTCC TTATCAATGC AATGCCACTA AGTTTAGGGG AATGGATATT 10013
.......... .......... .......... .......... .......... .......... 918
TTGTTTTGGA AGTATATTTG ATGTCAGACT TGAAGACCTA AATGTTCTTT TATACTGATA 10073
.......... .......... .......... .......... .......... .......... 918
TTTCCTCCAA TGGCGGGCTA TTGAGGTGCT GGACTGGAAT GCTGTCTATA TTAAACAATA 10133
.......... .......... .......... .......... .......... .......... 918
TATACTTCTA TGTTTACAGC TGTTTGTTTT CTGCTGACAT ACCATGACCA ATTTGTCATG 10193
.......... .......... .......... .......... .......... .......... 918
GTTTCAGTTA TGAGGTCAGA AAAAAAGAAA CTTCCATTGG GAAAACTTGA TATCTATTAC 10253
.......... .......... .......... .......... .......... .......... 918
TTCATTATTT ATAGTGAGTA ACAAAAGTTA GCACTTTCAA ACTGACTAAA GTATGCCAGG 10313
.......... .......... .......... .......... .......... .......... 918
GACGTATCAT GCATTTTACA ACATGCTCCA CATATCTCCA AATATCACAT ATTACGCTTG 10373
.......... .......... .......... .......... .......... .......... 918
TAGTGGTAAA CTGATAATAC ATCTACCAAC ACTGAAAGTT CTCACAAGTC AGAACCCTAT 10433
.......... .......... .......... .......... .......... .......... 918
ATTTGACAGT TGTGGTCTCC CTCCTTCCCT CTGCATTTGT TGCTACAGAT GATTACACTG 10493
.......... .......... .......... .......... .......... .......... 918
AGTTTTGTTT CTTGTCATTT AGGTTATGGA TAATGAAAAT AAGCCAAAAG CCAGGGAAGT 10553
|| |||| | || || | || | | | || ||||
.......... .......... ..GTGATGGG ACACGATAAG AGACCTAGTG CAGGGCAAGT 956
TGTCAAAAGA TTGATTGCTG AAGATGGATG GAAAGGTTTG TACAGAGGGT TGGGTCCAAG 10613
|| || | ||||||| | ||||| || || ||| || ||||| || | | ||||||||
AGTTAAGCAG CTAATTGCTG AGGATGGTTG GACAGGATTT TACAGGGGAT TAGGTCCAAG 1016
ATTTTTCAGC TCATCAGCTT GGGGAACCTC AATGATAGTA TGCTACGAGT ACCTGAGTAT 10673
|||| ||||| ||||| | |||||||||| |||||| | ||| || | | || |
ATTTGTCAGC ATGTCAGCGT GGGGAACCTC CATGATACTT GCCTATGAAT ATCTCA.... 1072
GTTTCGTCTT CCCTTGTCAA ATGTACACAT GCATATGTAG TGTTATATAT CACTGCATCC 10733
.......... .......... .......... .......... .......... .......... 1072
CATGCAGGTT AATTTTAAGT ACCCAGATAC TTCTTCTCAT TTAGAATTTA GTTAAAATGA 10793
.......... .......... .......... .......... .......... .......... 1072
CATCATTCAG GTCAGTTGGC ATCTCCAGTA CACTGCTTTT GTAAGTTGTA TCATAAATCC 10853
.......... .......... .......... .......... .......... .......... 1072
CATTTGCAAT GAAATTTTTG ACTCAAGTTG CAGCCTGTAA CTTTTCTATA TTTTTCGAAT 10913
.......... .......... .......... .......... .......... .......... 1072
AAAGCTATCA CCGTACATGA AACCTGCTTC TGTTAATGCC AAGGAGCGCA CATTATTTCC 10973
.......... .......... .......... .......... .......... .......... 1072
TGTAGACCGG CTTGGATGTT GAACAATTGG CACATGCAAG TAGCAAAGAG CAGCCTTGTG 11033
.......... .......... .......... .......... .......... .......... 1072
CTTGCAACAA TCTGGTCCAC CTGTGGATAT GTTCGCTGTG AAAGAAACCA ATTAGTCCTT 11093
.......... .......... .......... .......... .......... .......... 1072
GTATGAAACA TGGTATTAGC GCTTCATGAA TAAAACCACT GATTCTGATT TCTTATTTTC 11153
.......... .......... .......... .......... .......... .......... 1072
AATGAATGGA TGGGCATTAC CAAAGTTATC ATGATTAAAG ATCTATTTCA TATAAGTTTA 11213
.......... .......... .......... .......... .......... .......... 1072
TTTTTATACA TTAGAGTTTA TTTAGAGAAC AAGGTATATT TAGTTTTGGT AATTTTGTGA 11273
.......... .......... .......... .......... .......... .......... 1072
ACTGCACTCA GACGACTTTG GTATTCTTAC TGTAATTTTG TTTTGTTTTC CTACAGAGCG 11333
||||
.......... .......... .......... .......... .......... ......AGCG 1076
CTTGTGTGCT AAAGTTGAAG AG 11355
||||||||| | ||| ||
CTTGTGTGCA GTAAACGAAT AG 1098
********************************************************************************
EST sequence 201 +strand (File: 11908994+)
1 CAAGGGTTTA ATAGTAATAG TAATAGTAAT TCTTCATCTT CTTCTTCTTC TTGAACACGC
61 AAATTCAATT CATAAACTCT TCAATTTCCT GCAAAATCTC AACACACGCT TCTTCAATGG
121 CTGCTCCCGA AATCAACTGG GACAGGTTAG ATAAAATAAA ATACTATGTA GTGGGAGCTG
181 GACTCTTTTC GGGTGTTACT GTGGCACTCT ACCCTGTCTC TGTTGTGAAG ACTAGGATGC
241 AGGTTGCTTC AAACCATACT GCAGAGAGAA GTGCATTGTC TGTTGTGAAA GGATTACTCA
301 AGACAGATGG CATTCGTGGT TTGTATAAAG GGTTTGGCAT TGCCGTCACC GGAGCAATTC
361 CTGCCAGAAT CATATTTCTC ACTGCCTTGG AGACCACAAA GGCGGCTTCC TTCAAGATGC
421 TTGAACCATT TAAACTATCT GAAACTACAC AGGCTGCCAT AGCAAATGGC ATTGGTGGCA
481 TGACATCGTC GATCTGTGCA CAAGCTGTGT TTGTTCCAAT TGACGTGATT AGCCAAAAGT
541 TGATGGTGCA AGGGTACTCA GGCCATGCCC AGTATAGTGG GGGCTTGGAT GTTGCTCCGT
601 AAGTTGATAA AGGGGCTGAG GGAATTCCGG GGGTTAT
Predicted gene structure (within gDNA segment 7090 to 9591):
Exon 1 8045 8058 ( 14 n); cDNA 132 145 ( 14 n); score: 0.929
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0), Pa: 0.581 (s: 0.56)
Exon 2 8339 8720 ( 382 n); cDNA 146 527 ( 382 n); score: 0.631
Intron 2 8721 8848 ( 128 n); Pd: 0.857 (s: 0.74), Pa: 0.962 (s: 0.74)
Exon 3 8849 8952 ( 104 n); cDNA 528 634 ( 107 n); score: 0.702
MATCH 21326110+ 11908994+ 0.646 500 0.785 C
PGS_21326110+_11908994+ (8045 8058,8339 8720,8849 8952)
Alignment (genomic DNA sequence = upper lines):
ATCAACTGGG ACAAGTAAGC AACCCACCGG TCTTGTAATC CTTAGGTTCC CATTTCGTGC 8104
|||||||||| |||
ATCAACTGGG ACAG...... .......... .......... .......... .......... 145
CGATTTCCGC CTTTCTCGCG GTCCTAGTCT TCTAGAAATT TAGCTCCGAT CGTTGAACTG 8164
.......... .......... .......... .......... .......... .......... 145
TGTCCCCCGC CCTATTCCGG ATTGGCTTTA CCGCCTTAGG ATTAGGAACT GTTGTTTGAG 8224
.......... .......... .......... .......... .......... .......... 145
GATTTGACAT GGCTGTTCAT GCTCCTGGAC GAAGCGCAAT TTGGGGATTC GTAGCTTATT 8284
.......... .......... .......... .......... .......... .......... 145
CCGTTGTTTC CGATTCTTTT ACTGTTCTCA AATCGTGGCG CTGAAATGTT GCAGCCTCGA 8344
| ||
.......... .......... .......... .......... .......... ....GTTAGA 151
CAAGACCAAG CTCTACGTGG TGGGCGCAGG CATGTTCAGC GGCGTCACCG TGGCGCTGTA 8404
|| | || ||| || | |||| || || | || || || || | |||| || ||
TAAAATAAAA TACTATGTAG TGGGAGCTGG ACTCTTTTCG GGTGTTACTG TGGCACTCTA 211
TCCTGTCTCG GTGGTCAAGA CCCGGATGCA GGTTGCCTCT GGGGACGCCA TGAGGAGGAA 8464
|||||||| || || |||| | ||||||| |||||| || | | ||| |
CCCTGTCTCT GTTGTGAAGA CTAGGATGCA GGTTGCTTCA AACCATACTG CAGAGAGAAG 271
CGCGCTGGCT ACCTTCAAGA ACATCCTCAA GATGGACGGC GTGCCAGGGC TGTACCGGGG 8524
|| || || | || | ||||| || || ||| | | || |||| ||
TGCATTGTCT GTTGTGAAAG GATTACTCAA GACAGATGGC ATTCGTGGTT TGTATAAAGG 331
GTTTGCTACC GTTATCATTG GGGCTGTACC AACTAGGATC ATCTTCCTCA CAGCGCTTGA 8584
||||| | | ||| | | || | || | || ||| || || |||| | || | ||
GTTTGGCATT GCCGTCACCG GAGCAATTCC TGCCAGAATC ATATTTCTCA CTGCCTTGGA 391
GACAACCAAA GCAGCCTCGC TTAAGCTTGT TGAGCCCTTC AAGCTGTCAG AGCCGGTGCG 8644
||| || || || || || | ||| | | ||| || || || || || | | | |
GACCACAAAG GCGGCTTCCT TCAAGATGCT TGAACCATTT AAACTATCTG AAACTACACA 451
GGCTGCCTTT GCCAATGGCC TTGCTGGTCT GTCAGCGTCT ACATGTTCGC AGGCTATTTT 8704
||||||| | || |||||| ||| ||| | | || |||| | ||| | | | ||| | ||
GGCTGCCATA GCAAATGGCA TTGGTGGCAT GACATCGTCG ATCTGTGCAC AAGCTGTGTT 511
TGTTCCAATT GATGTGGTAT GCCTCTCATG TGCCTTCTAT GTGATGTTGT ATAGAGAAAA 8764
|||||||||| || |||
TGTTCCAATT GACGTG.... .......... .......... .......... .......... 527
AATATCTTAC AATATGTTGA TGTTAAATGC TAATTACAAT ACTAGACTAC TGTTTTCATT 8824
.......... .......... .......... .......... .......... .......... 527
CTGTTGTGCA TTGGAATGTT TCAGATTAGC CAGAAATTGA TGGTTCAAGG ATATTCTGGT 8884
|||||| || || |||| |||| ||||| || || ||
.......... .......... ....ATTAGC CAAAAGTTGA TGGTGCAAGG GTACTCAGGC 563
AATGCCAGAT ACAAAGGTGG ATTAGATGTT GCT-CGAAAG GTCATAAA-- GGCTGATGGC 8941
||||| | | | || || || |||||| ||| || ||| | ||||| |||||| ||
CATGCCCAGT ATAGTGGGGG CTTGGATGTT GCTCCGTAAG TTGATAAAGG GGCTGAGGGA 623
ATTAGGGGGC T 8952
||| |||| |
ATTCCGGGGG T 634
********************************************************************************
EST sequence 193 +strand (File: GAtuc02-10-21.5098+)
1 GGAATCTTTA CTGGAGTTAC AGTAGCATTA TACCCAGTCT CTGTTGTAAA AACTAGGCTT
61 CAGGTTGCTT CGAAGGACAC TGCAGAGAGA AGTGCTTTTT CTGTTATTAG AGGCATACTG
121 AAAACAGATG GAATCCCTGG TCTCTATCGA GGGTTTGGAA CAGTCATCAC TGGTGCCATT
181 CCTGCCAGGG TGATATTTCT CACTGCTCTG GAAACTACAA AAGTAGCTGC TTTCAGCATG
241 GTTGAACCAT TTAAATTCTC TGAACCTACG CAAGCTGCTA TAGCAAATGG AATTGCTGGA
301 ATGACTGCAT CTCTGTTTGC TCAAGCTGTT TTTGTTCCAA TTGATGTGAT TAGTCAAAAG
361 TTGATGGTCC AAGGATACTC AGGCCATGCA AAGTACAACG GAGGTCTAGA TGTTGCTCGT
421 AAGGTTTTAA AGTCTGATGG AATCCGAGGA TTATACAGAG GATTTGGTTT GGCAGTCATG
481 ACTTACTCTC CATCCAGGGC TGAATGGGGG GCTAGATATG GATCTAGCCA ACGTGGTATC
541 TGGAGGTTCT TGGGCCAGGC ACAGACCCTA AAGAAGGGGG TCCTAGGCTT CGACATAGGG
601 GCTGGCCAGG CTGGTGGAGA ATAATGGGGG GGCTCGAGGG GCTGCTGGCA CTGCGTGGGG
661 CCCTTTGAGA CTGGCTGCGG GAGGTGGGCC TTATGAAGGA CCTTTACCAG CATATGAGAA
721 AGCTGCGTTG CTTACAATGT ACGTAAGGTT TTCCATTGGG ATGGTTCATT ATCTTATATG
781 ATAATCTTAA GGACCCTCAG GCGGATGATT TAATCCTGGA TCCTTGTACC AGGTCTTACT
841 GTGCGGCCGT CGTTCCTCGA CTATTAGTAC ACTGTTGTAC C
Predicted gene structure (within gDNA segment 6761 to 11342):
Exon 1 7539 7557 ( 19 n); cDNA 80 97 ( 18 n); score: 0.684
Intron 1 7558 8209 ( 652 n); Pd: 0.000 (s: 0), Pa: 0.330 (s: 0)
Exon 2 8210 8225 ( 16 n); cDNA 98 113 ( 16 n); score: 0.688
Intron 2 8226 8485 ( 260 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.66)
Exon 3 8486 8720 ( 235 n); cDNA 114 348 ( 235 n); score: 0.672
Intron 3 8721 8848 ( 128 n); Pd: 0.857 (s: 0.74), Pa: 0.962 (s: 0.78)
Exon 4 8849 9045 ( 197 n); cDNA 349 545 ( 197 n); score: 0.756
Intron 4 9046 9697 ( 652 n); Pd: 0.980 (s: 0.72), Pa: 0.977 (s: 0.55)
Exon 5 9698 9773 ( 76 n); cDNA 546 621 ( 76 n); score: 0.526
Intron 5 9774 10200 ( 427 n); Pd: 0.000 (s: 0.58), Pa: 0.957 (s: 0)
Exon 6 10201 10207 ( 7 n); cDNA 622 628 ( 7 n); score: 0.714
Intron 6 10208 11329 (1122 n); Pd: 0.753 (s: 0), Pa: 0.992 (s: 0)
Exon 7 11330 11342 ( 13 n); cDNA 629 641 ( 13 n); score: 0.538
MATCH 21326110+ GAtuc02-10-21.5098+ 0.683 563 0.639 C
PGS_21326110+_GAtuc02-10-21.5098+ (7539 7557,8210 8225,8486 8720,8849 9045,9698 9773,10201 10207,11330 11342)
Alignment (genomic DNA sequence = upper lines):
TTCGCAGATA AATCTGCTTG CATTGCTACG CTGAACTGCG CAAGGAAGGA AAGAGTTCAA 7598
| ||||| | | |||||
CT-GCAGAGA GAAGTGCTT. .......... .......... .......... .......... 97
CGACCACGTG GTCAAATGGG CCATTTGCCG TAAAGCAAAG CAAACGGGCT TGGCAACCGA 7658
.......... .......... .......... .......... .......... .......... 97
GCCCAACTGT TAGAGCGCGT ACTACTCTCT CATTCTGCCT TTGGGCCCAA GAAAGAGGCG 7718
.......... .......... .......... .......... .......... .......... 97
TCCCCATCCC TGACGGCTGA CGCCGTCGAC GCGGCGACGC CCTCCAACAA AACGGAAGAG 7778
.......... .......... .......... .......... .......... .......... 97
GCGAGGAGCA CATGCCCTGT CCGCCATTCT CGCTGAGTTG TTGTGGACAA AAACAGCACG 7838
.......... .......... .......... .......... .......... .......... 97
AAAGTGGGGA GGGAAAACGG GGGGAAGCCA ACCACAGCAG CCCGCCCGCC CGCCATTCTT 7898
.......... .......... .......... .......... .......... .......... 97
GCCGAATCGA GTCCACGCCA CGCCTCCTGC GCCCCCTTCG GTTCTCACCT CGGGAGTCGC 7958
.......... .......... .......... .......... .......... .......... 97
GGATTGGTGG AGGGGAGGAT TTGAGCGGCG CGGCCATGGA TACAACCTCT AGGGCCGCCA 8018
.......... .......... .......... .......... .......... .......... 97
AGATCCCGTC GCTCCACCAG ACGGAGATCA ACTGGGACAA GTAAGCAACC CACCGGTCTT 8078
.......... .......... .......... .......... .......... .......... 97
GTAATCCTTA GGTTCCCATT TCGTGCCGAT TTCCGCCTTT CTCGCGGTCC TAGTCTTCTA 8138
.......... .......... .......... .......... .......... .......... 97
GAAATTTAGC TCCGATCGTT GAACTGTGTC CCCCGCCCTA TTCCGGATTG GCTTTACCGC 8198
.......... .......... .......... .......... .......... .......... 97
CTTAGGATTA GGAACTGTTG TTTGAGGATT TGACATGGCT GTTCATGCTC CTGGACGAAG 8258
||||| || ||||
.......... .TTTCTGTTA TTAGAGG... .......... .......... .......... 113
CGCAATTTGG GGATTCGTAG CTTATTCCGT TGTTTCCGAT TCTTTTACTG TTCTCAAATC 8318
.......... .......... .......... .......... .......... .......... 113
GTGGCGCTGA AATGTTGCAG CCTCGACAAG ACCAAGCTCT ACGTGGTGGG CGCAGGCATG 8378
.......... .......... .......... .......... .......... .......... 113
TTCAGCGGCG TCACCGTGGC GCTGTATCCT GTCTCGGTGG TCAAGACCCG GATGCAGGTT 8438
.......... .......... .......... .......... .......... .......... 113
GCCTCTGGGG ACGCCATGAG GAGGAACGCG CTGGCTACCT TCAAGAACAT CCTCAAGATG 8498
||| || || |
.......... .......... .......... .......... .......CAT ACTGAAAACA 126
GACGGCGTGC CAGGGCTGTA CCGGGGGTTT GCTACCGTTA TCATTGGGGC TGTACCAACT 8558
|| || | | | || || || || |||||| | || || | ||| ||| || | || |
GATGGAATCC CTGGTCTCTA TCGAGGGTTT GGAACAGTCA TCACTGGTGC CATTCCTGCC 186
AGGATCATCT TCCTCACAGC GCTTGAGACA ACCAAAGCAG CCTCGCTTAA GC-TTGTTGA 8617
||| | || | | ||||| || || || || || |||| || || || | || | |||||
AGGGTGATAT TTCTCACTGC TCTGGAAACT ACAAAAGTAG -CTGCTTTCA GCATGGTTGA 245
GCCCTTCAAG CTGTCAGAGC CGGTGCGGGC TGCCTTTGCC AATGGCCTTG CTGGTCTGTC 8677
|| || || | || || | | || || ||| | || ||||| ||| |||| || |
ACCATTTAAA TTCTCTGAAC CTACGCAAGC TGCTATAGCA AATGGAATTG CTGGAATGAC 305
AGCGTCTACA TGTTCGCAGG CTATTTTTGT TCCAATTGAT GTGGTATGCC TCTCATGTGC 8737
|| ||| | | | || | || ||||||| |||||||||| |||
TGCATCTCTG TTTGCTCAAG CTGTTTTTGT TCCAATTGAT GTG....... .......... 348
CTTCTATGTG ATGTTGTATA GAGAAAAAAT ATCTTACAAT ATGTTGATGT TAAATGCTAA 8797
.......... .......... .......... .......... .......... .......... 348
TTACAATACT AGACTACTGT TTTCATTCTG TTGTGCATTG GAATGTTTCA GATTAGCCAG 8857
||||| ||
.......... .......... .......... .......... .......... .ATTAGTCAA 357
AAATTGATGG TTCAAGGATA TTCTGGTAAT GCCAGATACA AAGGTGGATT AGATGTTGCT 8917
|| ||||||| | |||||||| || || || || | |||| | || || | ||||||||||
AAGTTGATGG TCCAAGGATA CTCAGGCCAT GCAAAGTACA ACGGAGGTCT AGATGTTGCT 417
CGAAAGGTCA TAAAGGCTGA TGGCATTAGG GGGCTGTACA GAGGATTTGG ACTGTCTGTT 8977
|| ||||| ||||| |||| ||| || | || | |||| |||||||||| || | ||
CGTAAGGTTT TAAAGTCTGA TGGAATCCGA GGATTATACA GAGGATTTGG TTTGGCAGTC 477
ATGACCTATG CTCCATCCAG TGCTGTGTGG TGGGCAAGTT ATGGTTCCAG CCAGCGCATA 9037
||||| || |||||||||| |||| ||| |||| || | |||| || || ||| ||
ATGACTTACT CTCCATCCAG GGCTGAATGG GGGGCTAGAT ATGGATCTAG CCAACGTGGT 537
ATTTGGAGGT TAGCTTATCT GATTGGTTCA TCGTTATGTT CCTCTCAGCC CTGTGTACTA 9097
|| |||||
ATCTGGAG.. .......... .......... .......... .......... .......... 545
TGTAATATTT ACGAGAAAAA GACCAGTAAT ACATTTCTAC TTAATAGTTA TTTGAATTGG 9157
.......... .......... .......... .......... .......... .......... 545
TACTTTCCAT CTGTCCAAAA CCTTTTCAAA CTTCCCCTCT TGATGCTCAA ACTGCAGCTA 9217
.......... .......... .......... .......... .......... .......... 545
TAATTGCAAT TTTGTTTTCT GATGCTTGTT CTTCCATGTC AATATGTACA TATCTTTTTT 9277
.......... .......... .......... .......... .......... .......... 545
AGAAAACAAG AATGCATCTC AATGCATGTG CTGTATTGTT TTGATTAGAT TTATCATAGC 9337
.......... .......... .......... .......... .......... .......... 545
GATCAATCAC ATTTTCTTTA CAGATAAAAA TAGTCGGAAG GATAAGTTGG ATAACTGACC 9397
.......... .......... .......... .......... .......... .......... 545
AAAGTGGAAA TATGATCTTA CATATTTTTA TCTCTGGCAG CTTAGAGAAC TTAATTACCA 9457
.......... .......... .......... .......... .......... .......... 545
ACCTGAAACA ATGTGATGAA GTAACTACAC AAAACCACAT ATAGTTTCAT GCACTCTGCA 9517
.......... .......... .......... .......... .......... .......... 545
AAACTAAATT GAAACTCTTA GTGTGCTCTT AATGCTGTTA AGAGGGTGTA TGCAAGTTTA 9577
.......... .......... .......... .......... .......... .......... 545
CTGGAATCAG TACCTTTTGT TAGTTTATTT CTTTGTGGTT GATGGTTGAA AGATTATATT 9637
.......... .......... .......... .......... .......... .......... 545
TCTTGTCTTG ATAACTTAGC CAAAATAGTT AACTATTGTG CTTTTTACAT ATTGGAACAG 9697
.......... .......... .......... .......... .......... .......... 545
TGCTCTT-GG CCATTTGCA- TGAC-AAAGA AGAGGCTCCT AGCCAATTGA AACTAGTTGG 9754
| |||| || ||| || | ||||| || || |||| || | | || | ||| |
-GTTCTTGGG CCAGGCACAG ACCCTAAAGA AGGGGGTCCT AGGC-TTCGA CA-TAGGGGC 602
TGTTCAAGCA TCAGGGGGGG TTTTTGCCGG TGCCGTGACC TCTTTTGTTA CGACTCCCAT 9814
|| || || || |
TGGCCAGGCT GGTGGAGAA. .......... .......... .......... .......... 621
AGATACAATA AAGACCAGGC TGCAGGTACT GTGTGACATT CTGTTTGCTG ATTACTCTTG 9874
.......... .......... .......... .......... .......... .......... 621
TAATTTGATT TGTGTGGGTA TATTTTGTGA GGCTTACCCT TGTGACTTAA TGATTCTTGT 9934
.......... .......... .......... .......... .......... .......... 621
CTTTACATTT ATGCTGCTCA TTTGCAATAA TTTGATTCCT TATCAATGCA ATGCCACTAA 9994
.......... .......... .......... .......... .......... .......... 621
GTTTAGGGGA ATGGATATTT TGTTTTGGAA GTATATTTGA TGTCAGACTT GAAGACCTAA 10054
.......... .......... .......... .......... .......... .......... 621
ATGTTCTTTT ATACTGATAT TTCCTCCAAT GGCGGGCTAT TGAGGTGCTG GACTGGAATG 10114
.......... .......... .......... .......... .......... .......... 621
CTGTCTATAT TAAACAATAT ATACTTCTAT GTTTACAGCT GTTTGTTTTC TGCTGACATA 10174
.......... .......... .......... .......... .......... .......... 621
CCATGACCAA TTTGTCATGG TTTCAGTTAT GAGGTCAGAA AAAAAGAAAC TTCCATTGGG 10234
| || | |
.......... .......... ......TAAT GGG....... .......... .......... 628
AAAACTTGAT ATCTATTACT TCATTATTTA TAGTGAGTAA CAAAAGTTAG CACTTTCAAA 10294
.......... .......... .......... .......... .......... .......... 628
CTGACTAAAG TATGCCAGGG ACGTATCATG CATTTTACAA CATGCTCCAC ATATCTCCAA 10354
.......... .......... .......... .......... .......... .......... 628
ATATCACATA TTACGCTTGT AGTGGTAAAC TGATAATACA TCTACCAACA CTGAAAGTTC 10414
.......... .......... .......... .......... .......... .......... 628
TCACAAGTCA GAACCCTATA TTTGACAGTT GTGGTCTCCC TCCTTCCCTC TGCATTTGTT 10474
.......... .......... .......... .......... .......... .......... 628
GCTACAGATG ATTACACTGA GTTTTGTTTC TTGTCATTTA GGTTATGGAT AATGAAAATA 10534
.......... .......... .......... .......... .......... .......... 628
AGCCAAAAGC CAGGGAAGTT GTCAAAAGAT TGATTGCTGA AGATGGATGG AAAGGTTTGT 10594
.......... .......... .......... .......... .......... .......... 628
ACAGAGGGTT GGGTCCAAGA TTTTTCAGCT CATCAGCTTG GGGAACCTCA ATGATAGTAT 10654
.......... .......... .......... .......... .......... .......... 628
GCTACGAGTA CCTGAGTATG TTTCGTCTTC CCTTGTCAAA TGTACACATG CATATGTAGT 10714
.......... .......... .......... .......... .......... .......... 628
GTTATATATC ACTGCATCCC ATGCAGGTTA ATTTTAAGTA CCCAGATACT TCTTCTCATT 10774
.......... .......... .......... .......... .......... .......... 628
TAGAATTTAG TTAAAATGAC ATCATTCAGG TCAGTTGGCA TCTCCAGTAC ACTGCTTTTG 10834
.......... .......... .......... .......... .......... .......... 628
TAAGTTGTAT CATAAATCCC ATTTGCAATG AAATTTTTGA CTCAAGTTGC AGCCTGTAAC 10894
.......... .......... .......... .......... .......... .......... 628
TTTTCTATAT TTTTCGAATA AAGCTATCAC CGTACATGAA ACCTGCTTCT GTTAATGCCA 10954
.......... .......... .......... .......... .......... .......... 628
AGGAGCGCAC ATTATTTCCT GTAGACCGGC TTGGATGTTG AACAATTGGC ACATGCAAGT 11014
.......... .......... .......... .......... .......... .......... 628
AGCAAAGAGC AGCCTTGTGC TTGCAACAAT CTGGTCCACC TGTGGATATG TTCGCTGTGA 11074
.......... .......... .......... .......... .......... .......... 628
AAGAAACCAA TTAGTCCTTG TATGAAACAT GGTATTAGCG CTTCATGAAT AAAACCACTG 11134
.......... .......... .......... .......... .......... .......... 628
ATTCTGATTT CTTATTTTCA ATGAATGGAT GGGCATTACC AAAGTTATCA TGATTAAAGA 11194
.......... .......... .......... .......... .......... .......... 628
TCTATTTCAT ATAAGTTTAT TTTTATACAT TAGAGTTTAT TTAGAGAACA AGGTATATTT 11254
.......... .......... .......... .......... .......... .......... 628
AGTTTTGGTA ATTTTGTGAA CTGCACTCAG ACGACTTTGG TATTCTTACT GTAATTTTGT 11314
.......... .......... .......... .......... .......... .......... 628
TTTGTTTTCC TACAGAGCGC TTGTGTGC 11342
| || | | | |
.......... .....GGGGC TCGAGGGG 641
********************************************************************************
EST sequence 194 +strand (File: 11206955+)
1 GGAATCTTTA CTGGAGTTAC AGTAGCATTA TACCCAGTCT CTGTTGTAAA AACTAGGCTT
61 CAGGTTGCTT CGAAGGACAC TGCAGAGAGA AGTGCTTTTT CTGTTATTAG AGGCATACTG
121 AAAACAGATG GAATCCCTGG TCTCTATCGA GGGTTTGGAA CAGTCATCAC TGGTGCCATT
181 CCTGCCAGGG TGATATTTCT CACTGCTCTG GAAACTACAA AAGTAGCTGC TTTCAGCATG
241 GTTGAACCAT TTAAATTCTC TGAACCTACG CAAGCTGCTA TAGCAAATGG AATTGCTGGA
301 ATGACTGCAT CTCTGTTTGC TCAAGCTGTT TTTGTTCCAA TTGATGTGAT TAGTCAAAAG
361 TTGATGGTCC AAGGATACTC AGGCCATGCA AAGTACAACG GAGGTCTAGA TGTTGCTCGT
421 AAGGTTTTAA AGTCTGATGG AATCCGAGGA TTATACAGAG GATTTGGTTT GTCAGTCATG
481 ACTTACTCTC CATCCAGTGC TGTATGGTGG GCTAGTTATG GTTCTAGCCA ACGTGTTATC
541 TGGAGGTTCT TGGGCCAGGG CACAGACCTA AAGGAAGTAG CTCCTAGTCT ATCGACAATA
601 GTGGCAGTGC AAGCTGCTGG AGGAATCATC GCAGGTGCTA CAGCTTCCTG CATCACAACT
661 CCATTGGACA CTATTAAGAC TCGCTTACAG GTGATGGGGC ATGAGAAGCG ACCTTCTACA
721 AGCAAGTCAG GAAAAACTGA ATTGCATATG ATGGTTGGAA AGGGTTCTAC AGAGGGTTGG
781 GTACAAGATT CTTCAGTTGT GAACATGGGG AACCTCAAGG ATTTTACCTT AATGATACTG
841 AGAACGGGAA TGCGTAGAAA AAGAC
Predicted gene structure (within gDNA segment 6761 to 11185):
Exon 1 7539 7557 ( 19 n); cDNA 80 97 ( 18 n); score: 0.684
Intron 1 7558 8209 ( 652 n); Pd: 0.000 (s: 0), Pa: 0.330 (s: 0)
Exon 2 8210 8225 ( 16 n); cDNA 98 113 ( 16 n); score: 0.688
Intron 2 8226 8485 ( 260 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.66)
Exon 3 8486 8720 ( 235 n); cDNA 114 348 ( 235 n); score: 0.672
Intron 3 8721 8848 ( 128 n); Pd: 0.857 (s: 0.74), Pa: 0.962 (s: 0.78)
Exon 4 8849 9045 ( 197 n); cDNA 349 545 ( 197 n); score: 0.792
Intron 4 9046 9697 ( 652 n); Pd: 0.980 (s: 0.84), Pa: 0.977 (s: 0.54)
Exon 5 9698 9839 ( 142 n); cDNA 546 690 ( 145 n); score: 0.577
Intron 5 9840 10515 ( 676 n); Pd: 0.994 (s: 0.58), Pa: 1.000 (s: 0.52)
Exon 6 10516 10650 ( 135 n); cDNA 691 823 ( 133 n); score: 0.696
MATCH 21326110+ 11206955+ 0.691 744 0.860 C
PGS_21326110+_11206955+ (7539 7557,8210 8225,8486 8720,8849 9045,9698 9839,10516 10650)
Alignment (genomic DNA sequence = upper lines):
TTCGCAGATA AATCTGCTTG CATTGCTACG CTGAACTGCG CAAGGAAGGA AAGAGTTCAA 7598
| ||||| | | |||||
CT-GCAGAGA GAAGTGCTT. .......... .......... .......... .......... 97
CGACCACGTG GTCAAATGGG CCATTTGCCG TAAAGCAAAG CAAACGGGCT TGGCAACCGA 7658
.......... .......... .......... .......... .......... .......... 97
GCCCAACTGT TAGAGCGCGT ACTACTCTCT CATTCTGCCT TTGGGCCCAA GAAAGAGGCG 7718
.......... .......... .......... .......... .......... .......... 97
TCCCCATCCC TGACGGCTGA CGCCGTCGAC GCGGCGACGC CCTCCAACAA AACGGAAGAG 7778
.......... .......... .......... .......... .......... .......... 97
GCGAGGAGCA CATGCCCTGT CCGCCATTCT CGCTGAGTTG TTGTGGACAA AAACAGCACG 7838
.......... .......... .......... .......... .......... .......... 97
AAAGTGGGGA GGGAAAACGG GGGGAAGCCA ACCACAGCAG CCCGCCCGCC CGCCATTCTT 7898
.......... .......... .......... .......... .......... .......... 97
GCCGAATCGA GTCCACGCCA CGCCTCCTGC GCCCCCTTCG GTTCTCACCT CGGGAGTCGC 7958
.......... .......... .......... .......... .......... .......... 97
GGATTGGTGG AGGGGAGGAT TTGAGCGGCG CGGCCATGGA TACAACCTCT AGGGCCGCCA 8018
.......... .......... .......... .......... .......... .......... 97
AGATCCCGTC GCTCCACCAG ACGGAGATCA ACTGGGACAA GTAAGCAACC CACCGGTCTT 8078
.......... .......... .......... .......... .......... .......... 97
GTAATCCTTA GGTTCCCATT TCGTGCCGAT TTCCGCCTTT CTCGCGGTCC TAGTCTTCTA 8138
.......... .......... .......... .......... .......... .......... 97
GAAATTTAGC TCCGATCGTT GAACTGTGTC CCCCGCCCTA TTCCGGATTG GCTTTACCGC 8198
.......... .......... .......... .......... .......... .......... 97
CTTAGGATTA GGAACTGTTG TTTGAGGATT TGACATGGCT GTTCATGCTC CTGGACGAAG 8258
||||| || ||||
.......... .TTTCTGTTA TTAGAGG... .......... .......... .......... 113
CGCAATTTGG GGATTCGTAG CTTATTCCGT TGTTTCCGAT TCTTTTACTG TTCTCAAATC 8318
.......... .......... .......... .......... .......... .......... 113
GTGGCGCTGA AATGTTGCAG CCTCGACAAG ACCAAGCTCT ACGTGGTGGG CGCAGGCATG 8378
.......... .......... .......... .......... .......... .......... 113
TTCAGCGGCG TCACCGTGGC GCTGTATCCT GTCTCGGTGG TCAAGACCCG GATGCAGGTT 8438
.......... .......... .......... .......... .......... .......... 113
GCCTCTGGGG ACGCCATGAG GAGGAACGCG CTGGCTACCT TCAAGAACAT CCTCAAGATG 8498
||| || || |
.......... .......... .......... .......... .......CAT ACTGAAAACA 126
GACGGCGTGC CAGGGCTGTA CCGGGGGTTT GCTACCGTTA TCATTGGGGC TGTACCAACT 8558
|| || | | | || || || || |||||| | || || | ||| ||| || | || |
GATGGAATCC CTGGTCTCTA TCGAGGGTTT GGAACAGTCA TCACTGGTGC CATTCCTGCC 186
AGGATCATCT TCCTCACAGC GCTTGAGACA ACCAAAGCAG CCTCGCTTAA GC-TTGTTGA 8617
||| | || | | ||||| || || || || || |||| || || || | || | |||||
AGGGTGATAT TTCTCACTGC TCTGGAAACT ACAAAAGTAG -CTGCTTTCA GCATGGTTGA 245
GCCCTTCAAG CTGTCAGAGC CGGTGCGGGC TGCCTTTGCC AATGGCCTTG CTGGTCTGTC 8677
|| || || | || || | | || || ||| | || ||||| ||| |||| || |
ACCATTTAAA TTCTCTGAAC CTACGCAAGC TGCTATAGCA AATGGAATTG CTGGAATGAC 305
AGCGTCTACA TGTTCGCAGG CTATTTTTGT TCCAATTGAT GTGGTATGCC TCTCATGTGC 8737
|| ||| | | | || | || ||||||| |||||||||| |||
TGCATCTCTG TTTGCTCAAG CTGTTTTTGT TCCAATTGAT GTG....... .......... 348
CTTCTATGTG ATGTTGTATA GAGAAAAAAT ATCTTACAAT ATGTTGATGT TAAATGCTAA 8797
.......... .......... .......... .......... .......... .......... 348
TTACAATACT AGACTACTGT TTTCATTCTG TTGTGCATTG GAATGTTTCA GATTAGCCAG 8857
||||| ||
.......... .......... .......... .......... .......... .ATTAGTCAA 357
AAATTGATGG TTCAAGGATA TTCTGGTAAT GCCAGATACA AAGGTGGATT AGATGTTGCT 8917
|| ||||||| | |||||||| || || || || | |||| | || || | ||||||||||
AAGTTGATGG TCCAAGGATA CTCAGGCCAT GCAAAGTACA ACGGAGGTCT AGATGTTGCT 417
CGAAAGGTCA TAAAGGCTGA TGGCATTAGG GGGCTGTACA GAGGATTTGG ACTGTCTGTT 8977
|| ||||| ||||| |||| ||| || | || | |||| |||||||||| |||| ||
CGTAAGGTTT TAAAGTCTGA TGGAATCCGA GGATTATACA GAGGATTTGG TTTGTCAGTC 477
ATGACCTATG CTCCATCCAG TGCTGTGTGG TGGGCAAGTT ATGGTTCCAG CCAGCGCATA 9037
||||| || |||||||||| |||||| ||| ||||| |||| ||||||| || ||| || |
ATGACTTACT CTCCATCCAG TGCTGTATGG TGGGCTAGTT ATGGTTCTAG CCAACGTGTT 537
ATTTGGAGGT TAGCTTATCT GATTGGTTCA TCGTTATGTT CCTCTCAGCC CTGTGTACTA 9097
|| |||||
ATCTGGAG.. .......... .......... .......... .......... .......... 545
TGTAATATTT ACGAGAAAAA GACCAGTAAT ACATTTCTAC TTAATAGTTA TTTGAATTGG 9157
.......... .......... .......... .......... .......... .......... 545
TACTTTCCAT CTGTCCAAAA CCTTTTCAAA CTTCCCCTCT TGATGCTCAA ACTGCAGCTA 9217
.......... .......... .......... .......... .......... .......... 545
TAATTGCAAT TTTGTTTTCT GATGCTTGTT CTTCCATGTC AATATGTACA TATCTTTTTT 9277
.......... .......... .......... .......... .......... .......... 545
AGAAAACAAG AATGCATCTC AATGCATGTG CTGTATTGTT TTGATTAGAT TTATCATAGC 9337
.......... .......... .......... .......... .......... .......... 545
GATCAATCAC ATTTTCTTTA CAGATAAAAA TAGTCGGAAG GATAAGTTGG ATAACTGACC 9397
.......... .......... .......... .......... .......... .......... 545
AAAGTGGAAA TATGATCTTA CATATTTTTA TCTCTGGCAG CTTAGAGAAC TTAATTACCA 9457
.......... .......... .......... .......... .......... .......... 545
ACCTGAAACA ATGTGATGAA GTAACTACAC AAAACCACAT ATAGTTTCAT GCACTCTGCA 9517
.......... .......... .......... .......... .......... .......... 545
AAACTAAATT GAAACTCTTA GTGTGCTCTT AATGCTGTTA AGAGGGTGTA TGCAAGTTTA 9577
.......... .......... .......... .......... .......... .......... 545
CTGGAATCAG TACCTTTTGT TAGTTTATTT CTTTGTGGTT GATGGTTGAA AGATTATATT 9637
.......... .......... .......... .......... .......... .......... 545
TCTTGTCTTG ATAACTTAGC CAAAATAGTT AACTATTGTG CTTTTTACAT ATTGGAACAG 9697
.......... .......... .......... .......... .......... .......... 545
TGCTCTTGGC CATTTGCA-T GA-C-AAA-G AAGAGGCTCC TAGCCAATTG AAACTAGTTG 9753
| |||||| | ||| || | ||| | ||| ||||| ||| | || | | | |||| |
-GTTCTTGGG CCAGGGCACA GACCTAAAGG AAGTAGCTCC TAGTCTATCG ACAATAGTGG 604
GTGTTCAAGC ATCAGGGGGG GTTTTTGCCG GTGCCGTGAC CTCTTTTGTT ACGACTCCCA 9813
|| ||||| | || || | | || | |||| | || | | || |||||
CAGTGCAAGC TGCTGGAGGA ATCATCGCAG GTGCTACAGC TTCCTGCATC ACAACTCCAT 664
TAGATACAAT AAAGACCAGG CTGCAGGTAC TGTGTGACAT TCTGTTTGCT GATTACTCTT 9873
| || || || ||||| | | |||
TGGACACTAT TAAGACTCGC TTACAG.... .......... .......... .......... 690
GTAATTTGAT TTGTGTGGGT ATATTTTGTG AGGCTTACCC TTGTGACTTA ATGATTCTTG 9933
.......... .......... .......... .......... .......... .......... 690
TCTTTACATT TATGCTGCTC ATTTGCAATA ATTTGATTCC TTATCAATGC AATGCCACTA 9993
.......... .......... .......... .......... .......... .......... 690
AGTTTAGGGG AATGGATATT TTGTTTTGGA AGTATATTTG ATGTCAGACT TGAAGACCTA 10053
.......... .......... .......... .......... .......... .......... 690
AATGTTCTTT TATACTGATA TTTCCTCCAA TGGCGGGCTA TTGAGGTGCT GGACTGGAAT 10113
.......... .......... .......... .......... .......... .......... 690
GCTGTCTATA TTAAACAATA TATACTTCTA TGTTTACAGC TGTTTGTTTT CTGCTGACAT 10173
.......... .......... .......... .......... .......... .......... 690
ACCATGACCA ATTTGTCATG GTTTCAGTTA TGAGGTCAGA AAAAAAGAAA CTTCCATTGG 10233
.......... .......... .......... .......... .......... .......... 690
GAAAACTTGA TATCTATTAC TTCATTATTT ATAGTGAGTA ACAAAAGTTA GCACTTTCAA 10293
.......... .......... .......... .......... .......... .......... 690
ACTGACTAAA GTATGCCAGG GACGTATCAT GCATTTTACA ACATGCTCCA CATATCTCCA 10353
.......... .......... .......... .......... .......... .......... 690
AATATCACAT ATTACGCTTG TAGTGGTAAA CTGATAATAC ATCTACCAAC ACTGAAAGTT 10413
.......... .......... .......... .......... .......... .......... 690
CTCACAAGTC AGAACCCTAT ATTTGACAGT TGTGGTCTCC CTCCTTCCCT CTGCATTTGT 10473
.......... .......... .......... .......... .......... .......... 690
TGCTACAGAT GATTACACTG AGTTTTGTTT CTTGTCATTT AGGTTATGGA TAATGAAAAT 10533
|| |||| |||| ||
.......... .......... .......... .......... ..GTGATGGG GCATGAGAA- 707
AAGCCAAAAG CCAGGGAAGT TGTCAAAAGA TTGATTGCTG AAGATGGATG GAAAGGTTTG 10593
| | || | |||| |||| | ||||| | ||||| || |||||| ||
GCGACCTTCT ACAAGCAAGT CAGGAAAAAC TGAATTGCAT ATGATGGTTG GAAAGGGTTC 767
TACAGAGGGT TGGGTCCAAG ATTTTTCAGC TCATCAGCTT GGGGAACCTC AATGATA 10650
|||||||||| ||||| |||| ||| ||||| | | | | | |||||||||| || |||
TACAGAGGGT TGGGTACAAG ATTCTTCAG- TTGTGAACAT GGGGAACCTC AAGGATT 823
********************************************************************************
EST sequence 189 +strand (File: GMtuc02-10-21.11861+)
1 GGCTGCCATT GCAAATGGAG TTGCAGGCAT GACATCATCG CTTTTTGCTC AATCTGTGTT
61 TGTACCAATT GATGTGGTTA GCCAAAAGTT GATGGTGCAA GGATACTCAG GCCATGCCCA
121 ATATAGCGGG GGTCTGGATG TTGTTCGCCA GGTTTTAAGG ACTGATGGCA TACGGGGATT
181 GTATCGAGGG TTTGGTCTGT CTGCTATTAC TTATGCCCCT GCCAGTGCAG TATGGTGGGC
241 AAGTTATGGT TCAAGCCAAC GCTTCATTTG GAGATTCCTG GACCATGGTG CCAAATATGA
301 TGAAGTCGCT CCTAGTCTGC AGAAAATTAT GTTAGTTCAG GCTACTGGAG GGATTATCGC
361 TGGTGCAACT TCATCCTGCA TTACAACCCC ATTGGATACT ATCAAGACAC GATTGCAGGT
421 AATGGGACAT GAAAATAGAA GCTCTATAAA ACAAGTTGCT AAAGATTTAA TCAATGAAGA
481 TGGTTGGAGA GGCTTTTATA GAGGGTTTGG TCCAAGATTT TTTAGCATGT CAGCATGGGG
541 TACTTCAATG ATATTGACTT ATGAGTATCT GAAACGCGTA TGCTCAAAAG ATGAATAGAT
601 GCAATTGGTC TGAAAGCTTT TGCCGATCTA TTAACCAAGA TTAGGATGAT GATGTTGAGT
661 CTGCACCTTC AGCATTGGAG TTGCTGTTCA ACATTTATCA CTCTTGGACT TGAGGGTTAA
721 ACTTTTAGCA GTACAACTAT ACTAACAGAT TATTCTGAAA ACACTCGCTA GATATGAATA
781 TGGCAAACTT CCTACCAGAA AATAAATTGC ATCATTCTTT TTTATAATTC TATTGGATTT
841 GATGTATTCT TTTATAGCAT TGCTGTGGAT ACTGTATCAT GGAAAGGAAG GAAATAGATT
901 GCAATTAAAT GTATGTAAAG AAATGTCAAG AATAAATTGA AATTCTAGTC
Predicted gene structure (within gDNA segment 8089 to 13064):
Exon 1 8645 8720 ( 76 n); cDNA 1 76 ( 76 n); score: 0.711
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.66), Pa: 0.962 (s: 0.76)
Exon 2 8849 9045 ( 197 n); cDNA 77 273 ( 197 n); score: 0.777
Intron 2 9046 9697 ( 652 n); Pd: 0.980 (s: 0.88), Pa: 0.977 (s: 0.47)
Exon 3 9698 9839 ( 142 n); cDNA 274 418 ( 145 n); score: 0.563
Intron 3 9840 10515 ( 676 n); Pd: 0.994 (s: 0.62), Pa: 1.000 (s: 0.56)
Exon 4 10516 10669 ( 154 n); cDNA 419 572 ( 154 n); score: 0.708
Intron 4 10670 11329 ( 660 n); Pd: 0.961 (s: 0.72), Pa: 0.992 (s: 0)
Exon 5 11330 11355 ( 26 n); cDNA 573 598 ( 26 n); score: 0.692
MATCH 21326110+ GMtuc02-10-21.11861+ 0.696 595 0.626 C
PGS_21326110+_GMtuc02-10-21.11861+ (8645 8720,8849 9045,9698 9839,10516 10669,11330 11355)
Alignment (genomic DNA sequence = upper lines):
GGCTGCCTTT GCCAATGGCC TTGCTGGTCT GTCAGCGTCT ACATGTTCGC AGGCTATTTT 8704
||||||| || || ||||| |||| || | | || | || | | | | | || | ||
GGCTGCCATT GCAAATGGAG TTGCAGGCAT GACATCATCG CTTTTTGCTC AATCTGTGTT 60
TGTTCCAATT GATGTGGTAT GCCTCTCATG TGCCTTCTAT GTGATGTTGT ATAGAGAAAA 8764
||| |||||| ||||||
TGTACCAATT GATGTG.... .......... .......... .......... .......... 76
AATATCTTAC AATATGTTGA TGTTAAATGC TAATTACAAT ACTAGACTAC TGTTTTCATT 8824
.......... .......... .......... .......... .......... .......... 76
CTGTTGTGCA TTGGAATGTT TCAGATTAGC CAGAAATTGA TGGTTCAAGG ATATTCTGGT 8884
||||| || || |||| |||| ||||| ||| || ||
.......... .......... ....GTTAGC CAAAAGTTGA TGGTGCAAGG ATACTCAGGC 112
AATGCCAGAT ACAAAGGTGG ATTAGATGTT GCTCGAAAGG TCATAAAGGC TGATGGCATT 8944
||||| || | | || || | |||||| | ||| ||| | ||| | | |||||||||
CATGCCCAAT ATAGCGGGGG TCTGGATGTT GTTCGCCAGG TTTTAAGGAC TGATGGCATA 172
AGGGGGCTGT ACAGAGGATT TGGACTGTCT GTTATGACCT ATGCTCCATC CAGTGCTGTG 9004
|||| ||| | |||| || ||| |||||| | ||| || | |||| || | |||||| ||
CGGGGATTGT ATCGAGGGTT TGGTCTGTCT GCTATTACTT ATGCCCCTGC CAGTGCAGTA 232
TGGTGGGCAA GTTATGGTTC CAGCCAGCGC ATAATTTGGA GGTTAGCTTA TCTGATTGGT 9064
|||||||||| |||||||||| ||||| ||| | ||||||| |
TGGTGGGCAA GTTATGGTTC AAGCCAACGC TTCATTTGGA G......... .......... 273
TCATCGTTAT GTTCCTCTCA GCCCTGTGTA CTATGTAATA TTTACGAGAA AAAGACCAGT 9124
.......... .......... .......... .......... .......... .......... 273
AATACATTTC TACTTAATAG TTATTTGAAT TGGTACTTTC CATCTGTCCA AAACCTTTTC 9184
.......... .......... .......... .......... .......... .......... 273
AAACTTCCCC TCTTGATGCT CAAACTGCAG CTATAATTGC AATTTTGTTT TCTGATGCTT 9244
.......... .......... .......... .......... .......... .......... 273
GTTCTTCCAT GTCAATATGT ACATATCTTT TTTAGAAAAC AAGAATGCAT CTCAATGCAT 9304
.......... .......... .......... .......... .......... .......... 273
GTGCTGTATT GTTTTGATTA GATTTATCAT AGCGATCAAT CACATTTTCT TTACAGATAA 9364
.......... .......... .......... .......... .......... .......... 273
AAATAGTCGG AAGGATAAGT TGGATAACTG ACCAAAGTGG AAATATGATC TTACATATTT 9424
.......... .......... .......... .......... .......... .......... 273
TTATCTCTGG CAGCTTAGAG AACTTAATTA CCAACCTGAA ACAATGTGAT GAAGTAACTA 9484
.......... .......... .......... .......... .......... .......... 273
CACAAAACCA CATATAGTTT CATGCACTCT GCAAAACTAA ATTGAAACTC TTAGTGTGCT 9544
.......... .......... .......... .......... .......... .......... 273
CTTAATGCTG TTAAGAGGGT GTATGCAAGT TTACTGGAAT CAGTACCTTT TGTTAGTTTA 9604
.......... .......... .......... .......... .......... .......... 273
TTTCTTTGTG GTTGATGGTT GAAAGATTAT ATTTCTTGTC TTGATAACTT AGCCAAAATA 9664
.......... .......... .......... .......... .......... .......... 273
GTTAACTATT GTGCTTTTTA CATATTGGAA CAGTGCTCTT GGCCAT-TTG -C-ATGACAA 9721
|| | |||| || | | | |
.......... .......... .......... ...ATTCCTG GACCATGGTG CCAAATATGA 300
AGAAGAGGCT CCTAGCCAAT TGAAACTAGT TGGTGTTCAA GCATCAGGGG GGGTTTTTGC 9781
|||| ||| ||||| | |||| | | ||||| || | || | || || | ||
TGAAGTCGCT CCTAGTCTGC AGAAAATTAT GTTAGTTCAG GCTACTGGAG GGATTATCGC 360
CGGTGCCGTG ACCTCTTTTG TTACGACTCC CATAGATACA ATAAAGACCA GGCTGCAGGT 9841
||||| | || | |||| || || | ||||| || ||||| | |||||
TGGTGCAACT TCATCCTGCA TTACAACCCC ATTGGATACT ATCAAGACAC GATTGCAG.. 418
ACTGTGTGAC ATTCTGTTTG CTGATTACTC TTGTAATTTG ATTTGTGTGG GTATATTTTG 9901
.......... .......... .......... .......... .......... .......... 418
TGAGGCTTAC CCTTGTGACT TAATGATTCT TGTCTTTACA TTTATGCTGC TCATTTGCAA 9961
.......... .......... .......... .......... .......... .......... 418
TAATTTGATT CCTTATCAAT GCAATGCCAC TAAGTTTAGG GGAATGGATA TTTTGTTTTG 10021
.......... .......... .......... .......... .......... .......... 418
GAAGTATATT TGATGTCAGA CTTGAAGACC TAAATGTTCT TTTATACTGA TATTTCCTCC 10081
.......... .......... .......... .......... .......... .......... 418
AATGGCGGGC TATTGAGGTG CTGGACTGGA ATGCTGTCTA TATTAAACAA TATATACTTC 10141
.......... .......... .......... .......... .......... .......... 418
TATGTTTACA GCTGTTTGTT TTCTGCTGAC ATACCATGAC CAATTTGTCA TGGTTTCAGT 10201
.......... .......... .......... .......... .......... .......... 418
TATGAGGTCA GAAAAAAAGA AACTTCCATT GGGAAAACTT GATATCTATT ACTTCATTAT 10261
.......... .......... .......... .......... .......... .......... 418
TTATAGTGAG TAACAAAAGT TAGCACTTTC AAACTGACTA AAGTATGCCA GGGACGTATC 10321
.......... .......... .......... .......... .......... .......... 418
ATGCATTTTA CAACATGCTC CACATATCTC CAAATATCAC ATATTACGCT TGTAGTGGTA 10381
.......... .......... .......... .......... .......... .......... 418
AACTGATAAT ACATCTACCA ACACTGAAAG TTCTCACAAG TCAGAACCCT ATATTTGACA 10441
.......... .......... .......... .......... .......... .......... 418
GTTGTGGTCT CCCTCCTTCC CTCTGCATTT GTTGCTACAG ATGATTACAC TGAGTTTTGT 10501
.......... .......... .......... .......... .......... .......... 418
TTCTTGTCAT TTAGGTTATG GATAATGAAA ATA-AGCCAA AAGCCAGGGA AGTTGTCAAA 10560
|| ||| | |||||| ||| | | | | | ||||| | ||
.......... ....GTAATG GGACATGAAA ATAGAAGCTC TA-TAAAACA AGTTG-CTAA 462
AGA-TTGATT GCTGAAGATG GATGGAAAGG TTTGTACAGA GGGTTGGGTC CAAGATTTTT 10619
||| || || |||||||| | |||| ||| || || ||| ||||| |||| ||||||||||
AGATTTAATC AATGAAGATG GTTGGAGAGG CTTTTATAGA GGGTTTGGTC CAAGATTTTT 522
CAGCTCATCA GCTTGGGGAA CCTCAATGAT AGTATGCTAC GAGTACCTGA GTATGTTTCG 10679
||| ||| || ||||| | | |||||||| | | || ||||| ||||
TAGCATGTCA GCATGGGGTA CTTCAATGAT ATTGACTTAT GAGTATCTGA .......... 572
TCTTCCCTTG TCAAATGTAC ACATGCATAT GTAGTGTTAT ATATCACTGC ATCCCATGCA 10739
.......... .......... .......... .......... .......... .......... 572
GGTTAATTTT AAGTACCCAG ATACTTCTTC TCATTTAGAA TTTAGTTAAA ATGACATCAT 10799
.......... .......... .......... .......... .......... .......... 572
TCAGGTCAGT TGGCATCTCC AGTACACTGC TTTTGTAAGT TGTATCATAA ATCCCATTTG 10859
.......... .......... .......... .......... .......... .......... 572
CAATGAAATT TTTGACTCAA GTTGCAGCCT GTAACTTTTC TATATTTTTC GAATAAAGCT 10919
.......... .......... .......... .......... .......... .......... 572
ATCACCGTAC ATGAAACCTG CTTCTGTTAA TGCCAAGGAG CGCACATTAT TTCCTGTAGA 10979
.......... .......... .......... .......... .......... .......... 572
CCGGCTTGGA TGTTGAACAA TTGGCACATG CAAGTAGCAA AGAGCAGCCT TGTGCTTGCA 11039
.......... .......... .......... .......... .......... .......... 572
ACAATCTGGT CCACCTGTGG ATATGTTCGC TGTGAAAGAA ACCAATTAGT CCTTGTATGA 11099
.......... .......... .......... .......... .......... .......... 572
AACATGGTAT TAGCGCTTCA TGAATAAAAC CACTGATTCT GATTTCTTAT TTTCAATGAA 11159
.......... .......... .......... .......... .......... .......... 572
TGGATGGGCA TTACCAAAGT TATCATGATT AAAGATCTAT TTCATATAAG TTTATTTTTA 11219
.......... .......... .......... .......... .......... .......... 572
TACATTAGAG TTTATTTAGA GAACAAGGTA TATTTAGTTT TGGTAATTTT GTGAACTGCA 11279
.......... .......... .......... .......... .......... .......... 572
CTCAGACGAC TTTGGTATTC TTACTGTAAT TTTGTTTTGT TTTCCTACAG AGCGCTTGTG 11339
| ||| | ||
.......... .......... .......... .......... .......... AACGCGTATG 582
TGCTAAAGTT GAAGAG 11355
| |||| | ||| ||
CTCAAAAGAT GAATAG 598
********************************************************************************
EST sequence 310 -strand (File: 10093099-)
1 CCTTGGTGGT TTGACGGCGT CTCTGTGCTC GCAGGCCGTG TTTGTGCCCA TTGATGTGGT
61 TAGCCAGAAA TTGATGGTTC AAGGATATTC TGGTCATGTC AAATATAAGG GTGGAATAGA
121 TGTTGTTCAA AAGATTATGA AGGCTGACGG GCCACGGGGA CTGTACAGAG GATTTGGCCT
181 GTCTGTTATG ACGTATGCAC CGTCTAGCGC TGTTTGGTGG GCGAGCTATG GATTCAGCCA
241 GCGTATAATT TGGAGTGCTC TTGGCCGTTT GAATGATAAA GAAGATACTC CTAGTCAGTT
301 GAAAATAGTC GGTGTTCAAG CAACAGGGGG AATGATTGCT GGGGCAGTGA CCTCTTGTGT
361 TTCAACTCCT CTAGATACAA TCAAAACCAG GCTGCAGGTT AATGTAAACA AGCCAAAAGC
421 CAGTGAGGTA GTTAGAAGAT TGATCGCTGA AGATGGATGG AAAGGTTTTT ACAGAGGGTT
481 AGGTCCAAGG TTTTTCAGCT CATCTGCCTG GGGTACATCA ATGATCGTAT GCTACGAATA
541 CTTAAAGCGT GTATGTGCTA AAGTTGAAGA GGTCTGAGTC GCGGGACATC TCCTTATGTG
601 GTTCCTGCAA AAACGCTGGA ATTTTTGTTA GCCGAAATGC AACAATACTA CAAGAAGACA
661 TCAGTGACAC CCACCTGAAG CTCTGTTTCT CGCTGACTTG ATAGCTAGAC AGTGGTTCTT
721 ACAAACTCTG GTGCCCCTGG AGGGTATATT TTTGTTTTGA GAATCTTTGA GGCTTGTATT
781 ATCTGCCTCT AGTGACAGCG NTATGGATTA GGCAGAATGC TCATATAAAC C
Predicted gene structure (within gDNA segment 8250 to 12020):
Exon 1 8663 8720 ( 58 n); cDNA 1 58 ( 58 n); score: 0.776
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.76), Pa: 0.962 (s: 0.90)
Exon 2 8849 9045 ( 197 n); cDNA 59 255 ( 197 n); score: 0.843
Intron 2 9046 9697 ( 652 n); Pd: 0.980 (s: 0.86), Pa: 0.977 (s: 0.84)
Exon 3 9698 9839 ( 142 n); cDNA 256 397 ( 142 n); score: 0.831
Intron 3 9840 10515 ( 676 n); Pd: 0.994 (s: 0.86), Pa: 1.000 (s: 0.74)
Exon 4 10516 10669 ( 154 n); cDNA 398 545 ( 148 n); score: 0.838
Intron 4 10670 11329 ( 660 n); Pd: 0.961 (s: 0.84), Pa: 0.992 (s: 0.72)
Exon 5 11330 11438 ( 109 n); cDNA 546 649 ( 104 n); score: 0.670
MATCH 21326110+ 10093099- 0.805 660 0.794 C
PGS_21326110+_10093099- (8663 8720,8849 9045,9698 9839,10516 10669,11330 11438)
Alignment (genomic DNA sequence = upper lines):
CCTTGCTGGT CTGTCAGCGT CTACATGTTC GCAGGCTATT TTTGTTCCAA TTGATGTGGT 8722
||||| |||| || | |||| || || || |||||| | ||||| || | ||||||||
CCTTGGTGGT TTGACGGCGT CTCTGTGCTC GCAGGCCGTG TTTGTGCCCA TTGATGTG.. 58
ATGCCTCTCA TGTGCCTTCT ATGTGATGTT GTATAGAGAA AAAATATCTT ACAATATGTT 8782
.......... .......... .......... .......... .......... .......... 58
GATGTTAAAT GCTAATTACA ATACTAGACT ACTGTTTTCA TTCTGTTGTG CATTGGAATG 8842
.......... .......... .......... .......... .......... .......... 58
TTTCAGATTA GCCAGAAATT GATGGTTCAA GGATATTCTG GTAATGCCAG ATACAAAGGT 8902
||| |||||||||| |||||||||| |||||||||| || ||| || ||| || |||
......GTTA GCCAGAAATT GATGGTTCAA GGATATTCTG GTCATGTCAA ATATAAGGGT 112
GGATTAGATG TTGCTCGAAA GGTCATAAAG GCTGATGGCA TTAGGGGGCT GTACAGAGGA 8962
||| |||||| ||| || ||| | | || ||| ||||| || |||| || ||||||||||
GGAATAGATG TTGTTCAAAA GATTATGAAG GCTGACGGGC CACGGGGACT GTACAGAGGA 172
TTTGGACTGT CTGTTATGAC CTATGCTCCA TCCAGTGCTG TGTGGTGGGC AAGTTATGGT 9022
||||| |||| |||||||||| ||||| || || || |||| | |||||||| || |||||
TTTGGCCTGT CTGTTATGAC GTATGCACCG TCTAGCGCTG TTTGGTGGGC GAGCTATGGA 232
TCCAGCCAGC GCATAATTTG GAGGTTAGCT TATCTGATTG GTTCATCGTT ATGTTCCTCT 9082
| |||||||| | |||||||| |||
TTCAGCCAGC GTATAATTTG GAG....... .......... .......... .......... 255
CAGCCCTGTG TACTATGTAA TATTTACGAG AAAAAGACCA GTAATACATT TCTACTTAAT 9142
.......... .......... .......... .......... .......... .......... 255
AGTTATTTGA ATTGGTACTT TCCATCTGTC CAAAACCTTT TCAAACTTCC CCTCTTGATG 9202
.......... .......... .......... .......... .......... .......... 255
CTCAAACTGC AGCTATAATT GCAATTTTGT TTTCTGATGC TTGTTCTTCC ATGTCAATAT 9262
.......... .......... .......... .......... .......... .......... 255
GTACATATCT TTTTTAGAAA ACAAGAATGC ATCTCAATGC ATGTGCTGTA TTGTTTTGAT 9322
.......... .......... .......... .......... .......... .......... 255
TAGATTTATC ATAGCGATCA ATCACATTTT CTTTACAGAT AAAAATAGTC GGAAGGATAA 9382
.......... .......... .......... .......... .......... .......... 255
GTTGGATAAC TGACCAAAGT GGAAATATGA TCTTACATAT TTTTATCTCT GGCAGCTTAG 9442
.......... .......... .......... .......... .......... .......... 255
AGAACTTAAT TACCAACCTG AAACAATGTG ATGAAGTAAC TACACAAAAC CACATATAGT 9502
.......... .......... .......... .......... .......... .......... 255
TTCATGCACT CTGCAAAACT AAATTGAAAC TCTTAGTGTG CTCTTAATGC TGTTAAGAGG 9562
.......... .......... .......... .......... .......... .......... 255
GTGTATGCAA GTTTACTGGA ATCAGTACCT TTTGTTAGTT TATTTCTTTG TGGTTGATGG 9622
.......... .......... .......... .......... .......... .......... 255
TTGAAAGATT ATATTTCTTG TCTTGATAAC TTAGCCAAAA TAGTTAACTA TTGTGCTTTT 9682
.......... .......... .......... .......... .......... .......... 255
TACATATTGG AACAGTGCTC TTGGCCATTT GCATGACAAA GAAGAGGCTC CTAGCCAATT 9742
||||| |||||| ||| | |||| ||| ||||| ||| |||| || ||
.......... .....TGCTC TTGGCCGTTT GAATGATAAA GAAGATACTC CTAGTCAGTT 300
GAAACTAGTT GGTGTTCAAG CATCAGGGGG GGTTTTTGCC GGTGCCGTGA CCTCTTTTGT 9802
|||| |||| |||||||||| || ||||||| | |||| || || |||| |||||| |||
GAAAATAGTC GGTGTTCAAG CAACAGGGGG AATGATTGCT GGGGCAGTGA CCTCTTGTGT 360
TACGACTCCC ATAGATACAA TAAAGACCAG GCTGCAGGTA CTGTGTGACA TTCTGTTTGC 9862
| | ||||| ||||||||| | || ||||| |||||||
TTCAACTCCT CTAGATACAA TCAAAACCAG GCTGCAG... .......... .......... 397
TGATTACTCT TGTAATTTGA TTTGTGTGGG TATATTTTGT GAGGCTTACC CTTGTGACTT 9922
.......... .......... .......... .......... .......... .......... 397
AATGATTCTT GTCTTTACAT TTATGCTGCT CATTTGCAAT AATTTGATTC CTTATCAATG 9982
.......... .......... .......... .......... .......... .......... 397
CAATGCCACT AAGTTTAGGG GAATGGATAT TTTGTTTTGG AAGTATATTT GATGTCAGAC 10042
.......... .......... .......... .......... .......... .......... 397
TTGAAGACCT AAATGTTCTT TTATACTGAT ATTTCCTCCA ATGGCGGGCT ATTGAGGTGC 10102
.......... .......... .......... .......... .......... .......... 397
TGGACTGGAA TGCTGTCTAT ATTAAACAAT ATATACTTCT ATGTTTACAG CTGTTTGTTT 10162
.......... .......... .......... .......... .......... .......... 397
TCTGCTGACA TACCATGACC AATTTGTCAT GGTTTCAGTT ATGAGGTCAG AAAAAAAGAA 10222
.......... .......... .......... .......... .......... .......... 397
ACTTCCATTG GGAAAACTTG ATATCTATTA CTTCATTATT TATAGTGAGT AACAAAAGTT 10282
.......... .......... .......... .......... .......... .......... 397
AGCACTTTCA AACTGACTAA AGTATGCCAG GGACGTATCA TGCATTTTAC AACATGCTCC 10342
.......... .......... .......... .......... .......... .......... 397
ACATATCTCC AAATATCACA TATTACGCTT GTAGTGGTAA ACTGATAATA CATCTACCAA 10402
.......... .......... .......... .......... .......... .......... 397
CACTGAAAGT TCTCACAAGT CAGAACCCTA TATTTGACAG TTGTGGTCTC CCTCCTTCCC 10462
.......... .......... .......... .......... .......... .......... 397
TCTGCATTTG TTGCTACAGA TGATTACACT GAGTTTTGTT TCTTGTCATT TAGGTTATGG 10522
| |
.......... .......... .......... .......... .......... ...G---T-- 399
ATAATGAAAA TAAGCCAAAA GCCAGGGAAG TTGTCAAAAG ATTGATTGCT GAAGATGGAT 10582
||||| ||| ||||||||| ||||| || | | || | ||| |||||| ||| ||||||||||
-TAATGTAAA CAAGCCAAAA GCCAGTGAGG TAGTTAGAAG ATTGATCGCT GAAGATGGAT 458
GGAAAGGTTT GTACAGAGGG TTGGGTCCAA GATTTTTCAG CTCATCAGCT TGGGGAACCT 10642
|||||||||| ||||||||| || ||||||| | |||||||| |||||| || ||||| || |
GGAAAGGTTT TTACAGAGGG TTAGGTCCAA GGTTTTTCAG CTCATCTGCC TGGGGTACAT 518
CAATGATAGT ATGCTACGAG TACCTGAGTA TGTTTCGTCT TCCCTTGTCA AATGTACACA 10702
||||||| || ||||||||| ||| | |
CAATGATCGT ATGCTACGAA TACTTAA... .......... .......... .......... 545
TGCATATGTA GTGTTATATA TCACTGCATC CCATGCAGGT TAATTTTAAG TACCCAGATA 10762
.......... .......... .......... .......... .......... .......... 545
CTTCTTCTCA TTTAGAATTT AGTTAAAATG ACATCATTCA GGTCAGTTGG CATCTCCAGT 10822
.......... .......... .......... .......... .......... .......... 545
ACACTGCTTT TGTAAGTTGT ATCATAAATC CCATTTGCAA TGAAATTTTT GACTCAAGTT 10882
.......... .......... .......... .......... .......... .......... 545
GCAGCCTGTA ACTTTTCTAT ATTTTTCGAA TAAAGCTATC ACCGTACATG AAACCTGCTT 10942
.......... .......... .......... .......... .......... .......... 545
CTGTTAATGC CAAGGAGCGC ACATTATTTC CTGTAGACCG GCTTGGATGT TGAACAATTG 11002
.......... .......... .......... .......... .......... .......... 545
GCACATGCAA GTAGCAAAGA GCAGCCTTGT GCTTGCAACA ATCTGGTCCA CCTGTGGATA 11062
.......... .......... .......... .......... .......... .......... 545
TGTTCGCTGT GAAAGAAACC AATTAGTCCT TGTATGAAAC ATGGTATTAG CGCTTCATGA 11122
.......... .......... .......... .......... .......... .......... 545
ATAAAACCAC TGATTCTGAT TTCTTATTTT CAATGAATGG ATGGGCATTA CCAAAGTTAT 11182
.......... .......... .......... .......... .......... .......... 545
CATGATTAAA GATCTATTTC ATATAAGTTT ATTTTTATAC ATTAGAGTTT ATTTAGAGAA 11242
.......... .......... .......... .......... .......... .......... 545
CAAGGTATAT TTAGTTTTGG TAATTTTGTG AACTGCACTC AGACGACTTT GGTATTCTTA 11302
.......... .......... .......... .......... .......... .......... 545
CTGTAATTTT GTTTTGTTTT CCTACAGAGC GCTTGTGTGC TAAAGTTGAA GAGGTCTGAT 11362
||| | | ||||| |||||||||| |||||||||
.......... .......... .......AGC GTGTATGTGC TAAAGTTGAA GAGGTCTGA- 577
TTCTGAGCTG CCTTAAACTC AGAACGCAAT TCCTACAATT CTGGAAGTTT TGTATTAGCA 11422
|| | | | | | || | | | | | || |||||| ||| | | |||||
GTC-GCG-GG ACATCTCCTT ATGTGGTTCC TGCAAAAACG CTGGAA-TTT T-TGTTAGCC 633
GAAGTGTAAT AATGCT 11438
||| || || ||| ||
GAAATGCAAC AATACT 649
********************************************************************************
EST sequence 300 -strand (File: 14528874-)
1 CGTTTGAATG ATAAAGAAGA TACTCCTAGT CAGTTGAAAA TAGTCGGTGT TCAAGCAACA
61 GGGGGAATGG TTGCTGGGGC AGTGACCTCT TGTGTTTCAA CTCCTCTAGA TACAATCAAA
121 ACCAGGCTGC AGGTTAATAT CAACAAGCCA AAAGCCAGTG AAGTAGTTAG AAGATTGATC
181 GCTGAAGATG GATGGAAAGG TTTCTACAGA GGGTTAGGCC CAAGGTTTTT CAGCTCATCT
241 GCTTGGGGTA CATCAATGAT CGTATGCTAC GAATACCTAA AGCGTGTATG TGCTAAAGTT
301 GAAGAGGCCT GAGTCGCCCG ACATCTCCTT ATGTGGTTCC TGCAAAAAAC GCTGGAAGTT
361 TTGTTGGTAG CCTAAAAGCA ACAATACTAC AAGAAGGCAT CGGTGACACC CACTGAAGCT
421 CTGTTTCTCG CTGACTTGAT AGCTAGACAG TGGTTCTTAC AAGCTTTGGT GCCCCTGGAG
481 GGTATTTTTT TTGGCGGAAT ATTTGAGGCT CGTATTAGCT GCTGCCTCTA GTGACAGCTA
541 TGGGTTAGGC AGAATGCTCA TATAAACCAA GAGATCAGAT GTATTCAATT TCTATTCTTT
601 TGAACTCCAA GGCTTTGTTA TGGTGAGTCT GGTCGATTGG GGCCAGTTGT AATGACACGT
661 GAGGGGCAAG CTTCGCATTT
Predicted gene structure (within gDNA segment 9223 to 12155):
Exon 1 9708 9839 ( 132 n); cDNA 1 132 ( 132 n); score: 0.818
Intron 1 9840 10515 ( 676 n); Pd: 0.994 (s: 0.86), Pa: 1.000 (s: 0.76)
Exon 2 10516 10669 ( 154 n); cDNA 133 280 ( 148 n); score: 0.851
Intron 2 10670 11329 ( 660 n); Pd: 0.961 (s: 0.88), Pa: 0.992 (s: 0.70)
Exon 3 11330 11474 ( 145 n); cDNA 281 421 ( 141 n); score: 0.559
Intron 3 11475 11504 ( 30 n); Pd: 0.443 (s: 0.46), Pa: 0.000 (s: 0.71) ??
Exon 4 11505 11742 ( 238 n); cDNA 422 659 ( 238 n); score: 0.626
MATCH 21326110+ 14528874- 0.701 669 0.984 C
PGS_21326110+_14528874- (9708 9839,10516 10669,11330 11474,11505 11742)
Alignment (genomic DNA sequence = upper lines):
CATTTGCATG ACAAAGAAGA GGCTCCTAGC CAATTGAAAC TAGTTGGTGT TCAAGCATCA 9767
| |||| ||| | |||||||| ||||||| || |||||| |||| ||||| ||||||| ||
CGTTTGAATG ATAAAGAAGA TACTCCTAGT CAGTTGAAAA TAGTCGGTGT TCAAGCAACA 60
GGGGGGGTTT TTGCCGGTGC CGTGACCTCT TTTGTTACGA CTCCCATAGA TACAATAAAG 9827
||||| | |||| || || ||||||||| | |||| | | |||| |||| |||||| ||
GGGGGAATGG TTGCTGGGGC AGTGACCTCT TGTGTTTCAA CTCCTCTAGA TACAATCAAA 120
ACCAGGCTGC AGGTACTGTG TGACATTCTG TTTGCTGATT ACTCTTGTAA TTTGATTTGT 9887
|||||||||| ||
ACCAGGCTGC AG........ .......... .......... .......... .......... 132
GTGGGTATAT TTTGTGAGGC TTACCCTTGT GACTTAATGA TTCTTGTCTT TACATTTATG 9947
.......... .......... .......... .......... .......... .......... 132
CTGCTCATTT GCAATAATTT GATTCCTTAT CAATGCAATG CCACTAAGTT TAGGGGAATG 10007
.......... .......... .......... .......... .......... .......... 132
GATATTTTGT TTTGGAAGTA TATTTGATGT CAGACTTGAA GACCTAAATG TTCTTTTATA 10067
.......... .......... .......... .......... .......... .......... 132
CTGATATTTC CTCCAATGGC GGGCTATTGA GGTGCTGGAC TGGAATGCTG TCTATATTAA 10127
.......... .......... .......... .......... .......... .......... 132
ACAATATATA CTTCTATGTT TACAGCTGTT TGTTTTCTGC TGACATACCA TGACCAATTT 10187
.......... .......... .......... .......... .......... .......... 132
GTCATGGTTT CAGTTATGAG GTCAGAAAAA AAGAAACTTC CATTGGGAAA ACTTGATATC 10247
.......... .......... .......... .......... .......... .......... 132
TATTACTTCA TTATTTATAG TGAGTAACAA AAGTTAGCAC TTTCAAACTG ACTAAAGTAT 10307
.......... .......... .......... .......... .......... .......... 132
GCCAGGGACG TATCATGCAT TTTACAACAT GCTCCACATA TCTCCAAATA TCACATATTA 10367
.......... .......... .......... .......... .......... .......... 132
CGCTTGTAGT GGTAAACTGA TAATACATCT ACCAACACTG AAAGTTCTCA CAAGTCAGAA 10427
.......... .......... .......... .......... .......... .......... 132
CCCTATATTT GACAGTTGTG GTCTCCCTCC TTCCCTCTGC ATTTGTTGCT ACAGATGATT 10487
.......... .......... .......... .......... .......... .......... 132
ACACTGAGTT TTGTTTCTTG TCATTTAGGT TATGGATAAT GAAAATAAGC CAAAAGCCAG 10547
|| || || || || |||| ||||||||||
.......... .......... ........GT TA---AT-AT --CAACAAGC CAAAAGCCAG 158
GGAAGTTGTC AAAAGATTGA TTGCTGAAGA TGGATGGAAA GGTTTGTACA GAGGGTTGGG 10607
||||| || | |||||||| | |||||||| |||||||||| ||||| |||| ||||||| ||
TGAAGTAGTT AGAAGATTGA TCGCTGAAGA TGGATGGAAA GGTTTCTACA GAGGGTTAGG 218
TCCAAGATTT TTCAGCTCAT CAGCTTGGGG AACCTCAATG ATAGTATGCT ACGAGTACCT 10667
||||| ||| |||||||||| | |||||||| || |||||| || ||||||| |||| |||||
CCCAAGGTTT TTCAGCTCAT CTGCTTGGGG TACATCAATG ATCGTATGCT ACGAATACCT 278
GAGTATGTTT CGTCTTCCCT TGTCAAATGT ACACATGCAT ATGTAGTGTT ATATATCACT 10727
|
AA........ .......... .......... .......... .......... .......... 280
GCATCCCATG CAGGTTAATT TTAAGTACCC AGATACTTCT TCTCATTTAG AATTTAGTTA 10787
.......... .......... .......... .......... .......... .......... 280
AAATGACATC ATTCAGGTCA GTTGGCATCT CCAGTACACT GCTTTTGTAA GTTGTATCAT 10847
.......... .......... .......... .......... .......... .......... 280
AAATCCCATT TGCAATGAAA TTTTTGACTC AAGTTGCAGC CTGTAACTTT TCTATATTTT 10907
.......... .......... .......... .......... .......... .......... 280
TCGAATAAAG CTATCACCGT ACATGAAACC TGCTTCTGTT AATGCCAAGG AGCGCACATT 10967
.......... .......... .......... .......... .......... .......... 280
ATTTCCTGTA GACCGGCTTG GATGTTGAAC AATTGGCACA TGCAAGTAGC AAAGAGCAGC 11027
.......... .......... .......... .......... .......... .......... 280
CTTGTGCTTG CAACAATCTG GTCCACCTGT GGATATGTTC GCTGTGAAAG AAACCAATTA 11087
.......... .......... .......... .......... .......... .......... 280
GTCCTTGTAT GAAACATGGT ATTAGCGCTT CATGAATAAA ACCACTGATT CTGATTTCTT 11147
.......... .......... .......... .......... .......... .......... 280
ATTTTCAATG AATGGATGGG CATTACCAAA GTTATCATGA TTAAAGATCT ATTTCATATA 11207
.......... .......... .......... .......... .......... .......... 280
AGTTTATTTT TATACATTAG AGTTTATTTA GAGAACAAGG TATATTTAGT TTTGGTAATT 11267
.......... .......... .......... .......... .......... .......... 280
TTGTGAACTG CACTCAGACG ACTTTGGTAT TCTTACTGTA ATTTTGTTTT GTTTTCCTAC 11327
.......... .......... .......... .......... .......... .......... 280
AGAGCGCTTG TGTGCTAAAG TTGAAGAGGT CTGATTTCTG AGCTGCCTTA AACTCA-GAA 11386
|||| | |||||||||| ||||||||| |||| || | | | | | || | |
..AGCGTGTA TGTGCTAAAG TTGAAGAGGC CTGA-GTC-G -CCCGACATC TCCTTATGTG 335
CGCAATTCCT ACAATTCTGG AAGTTTTG-T ATTAGCAGAA GTGTAATAAT GCTGTACACC 11445
| | | || |||| |||||||| | |||| || | || ||| | ||||
GTTCCTGCAA AAAACGCTGG AAGTTTTGTT GGTAGCCTAA AAGCAACAAT AC--TACAAG 393
AACGGAAGCT TCAGTTCTTG CTGACATAGG TGAAAGTATT AAACATGGAT GTTTGATGGT 11505
|| || | | | |||| |
AA-GGCATCG GTGACACCCA CTGAAGCTC. .......... .......... .........T 422
GTTAAAGACG TCATTTGAT- GCTAGACAAT AGTCCTTACA AACTTTGGT- TCTCT-GAGC 11562
||| | | | ||||| |||||||| | || |||||| | ||||||| | || |||
GTTTCTCGC- TGACTTGATA GCTAGACAGT GGTTCTTACA AGCTTTGGTG CCCCTGGAGG 481
AGAGTATTCT CAAAAAAAT- GCAGGGGCCT ATATTTTTTT TTGCCTCTTA TGCTGAATAT 11621
| | || | ||| | ||| |||| | ||||||| || |||
GTATTTTTTT TGGCGGAATA TTTGAGGCTC GTATTAGCTG CTGCCTCTAG TGACAGCTAT 541
GGATTAGGCT GATCATTTTA GATGAATATA AACGAGATCA GATGTACACA TTTATCATTC 11681
|| |||||| || || | || | | || ||||||| |||||| || || ||||
GGGTTAGGCA GA--ATGCT- CATATAAACC AA-GAGATCA GATGTATTCA ATTTCTATTC 597
TTTTATACGT GAAGGC-TTG TTTTAGCGAG GCTGGATGAT TGAGACCAGT TGTAATGACA 11740
|||| || ||||| ||| || | | ||| |||| ||| || | ||||| ||||||||||
TTTTGAACTC CAAGGCTTTG TTATGGTGAG TCTGGTCGAT TGGGGCCAGT TGTAATGACA 657
TG 11742
|
CG 659
********************************************************************************
EST sequence 290 -strand (File: ZMtuc02-12-23.12129-)
1 CAATTGAAAA TAGTTGGTGT TCAAGCATCA GGGGGGATTT TTGCTGGTGC TGTGCCCTCT
61 TTTGTTACGA CTCCCATAGA TACAATCAAG ACCAGGCTGC AGGTTATGGA TAATGAAAAT
121 AAGCCAAAAG CTGGGGAAGT TGTTAAAAGA TTGATTGCTG AAGATGGATG GAAAGGTTTG
181 TACAGAGGGT TGGGTCCAAG ATTTTTCAGC TCATCAGCTT GGGGTCCCTC AATGATAGTA
241 TGCTACGAGT ACCTGAAGCG CTTGTGTGCT AAAGTTGAAG AGGTCTGACT TCTGTTCTTA
301 CTATTCTGGA AGTTTTGTAT TAGCAGAAGT GAAATAATGC TGTATGTCGC CAACATTGAC
361 CCCCCCGGAA GCTTCAGTTC TTGCTGACGT AGGTGAAAGC ATTCAACATG GATGTTTGAT
421 GGTGTACTTC ATTTGATGCT AGACAATAGT CTTTACAAAC TTTGCTTCTC TGGGCTATAT
481 TCTCAAAAAA ATGGAGGGGC CTATATTTTT TTGCTCATAT GATGAATATG GGTTAGGCGG
541 ATTATTTTAG GTGAGTATAA ACGATATCAG ATGTACACAC TTCTCATTCT TTTATACATG
601 AAGGCTGTTT TAGCGAGGCT GTATGATTAT GACCAGTCTG GATGATTGAG ACCAGTTGTA
661 ATGACACGGA ACGATGTTTC CGGGAGATGC TGTTTTGACC TTTTTTTTTT CCTCATGCGG
721 TTTCAGTTAA AAAAAAAAAA AAAAAAACT
Predicted gene structure (within gDNA segment 9393 to 12214):
Exon 1 9738 9839 ( 102 n); cDNA 1 102 ( 102 n); score: 0.941
Intron 1 9840 10515 ( 676 n); Pd: 0.994 (s: 0.96), Pa: 1.000 (s: 0.94)
Exon 2 10516 10669 ( 154 n); cDNA 103 256 ( 154 n); score: 0.968
Intron 2 10670 11329 ( 660 n); Pd: 0.961 (s: 0.96), Pa: 0.992 (s: 0.84)
Exon 3 11330 11738 ( 409 n); cDNA 257 645 ( 389 n); score: 0.802
PPA cDNA 729 748
MATCH 21326110+ ZMtuc02-12-23.12129- 0.862 665 0.888 C
PGS_21326110+_ZMtuc02-12-23.12129- (9738 9839,10516 10669,11330 11738)
Alignment (genomic DNA sequence = upper lines):
CAATTGAAAC TAGTTGGTGT TCAAGCATCA GGGGGGGTTT TTGCCGGTGC CGTGACCTCT 9797
||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||| ||| |||||
CAATTGAAAA TAGTTGGTGT TCAAGCATCA GGGGGGATTT TTGCTGGTGC TGTGCCCTCT 60
TTTGTTACGA CTCCCATAGA TACAATAAAG ACCAGGCTGC AGGTACTGTG TGACATTCTG 9857
|||||||||| |||||||||| |||||| ||| |||||||||| ||
TTTGTTACGA CTCCCATAGA TACAATCAAG ACCAGGCTGC AG........ .......... 102
TTTGCTGATT ACTCTTGTAA TTTGATTTGT GTGGGTATAT TTTGTGAGGC TTACCCTTGT 9917
.......... .......... .......... .......... .......... .......... 102
GACTTAATGA TTCTTGTCTT TACATTTATG CTGCTCATTT GCAATAATTT GATTCCTTAT 9977
.......... .......... .......... .......... .......... .......... 102
CAATGCAATG CCACTAAGTT TAGGGGAATG GATATTTTGT TTTGGAAGTA TATTTGATGT 10037
.......... .......... .......... .......... .......... .......... 102
CAGACTTGAA GACCTAAATG TTCTTTTATA CTGATATTTC CTCCAATGGC GGGCTATTGA 10097
.......... .......... .......... .......... .......... .......... 102
GGTGCTGGAC TGGAATGCTG TCTATATTAA ACAATATATA CTTCTATGTT TACAGCTGTT 10157
.......... .......... .......... .......... .......... .......... 102
TGTTTTCTGC TGACATACCA TGACCAATTT GTCATGGTTT CAGTTATGAG GTCAGAAAAA 10217
.......... .......... .......... .......... .......... .......... 102
AAGAAACTTC CATTGGGAAA ACTTGATATC TATTACTTCA TTATTTATAG TGAGTAACAA 10277
.......... .......... .......... .......... .......... .......... 102
AAGTTAGCAC TTTCAAACTG ACTAAAGTAT GCCAGGGACG TATCATGCAT TTTACAACAT 10337
.......... .......... .......... .......... .......... .......... 102
GCTCCACATA TCTCCAAATA TCACATATTA CGCTTGTAGT GGTAAACTGA TAATACATCT 10397
.......... .......... .......... .......... .......... .......... 102
ACCAACACTG AAAGTTCTCA CAAGTCAGAA CCCTATATTT GACAGTTGTG GTCTCCCTCC 10457
.......... .......... .......... .......... .......... .......... 102
TTCCCTCTGC ATTTGTTGCT ACAGATGATT ACACTGAGTT TTGTTTCTTG TCATTTAGGT 10517
||
.......... .......... .......... .......... .......... ........GT 104
TATGGATAAT GAAAATAAGC CAAAAGCCAG GGAAGTTGTC AAAAGATTGA TTGCTGAAGA 10577
|||||||||| |||||||||| ||||||| | ||||||||| |||||||||| ||||||||||
TATGGATAAT GAAAATAAGC CAAAAGCTGG GGAAGTTGTT AAAAGATTGA TTGCTGAAGA 164
TGGATGGAAA GGTTTGTACA GAGGGTTGGG TCCAAGATTT TTCAGCTCAT CAGCTTGGGG 10637
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGGATGGAAA GGTTTGTACA GAGGGTTGGG TCCAAGATTT TTCAGCTCAT CAGCTTGGGG 224
AACCTCAATG ATAGTATGCT ACGAGTACCT GAGTATGTTT CGTCTTCCCT TGTCAAATGT 10697
|||||||| |||||||||| |||||||||| ||
TCCCTCAATG ATAGTATGCT ACGAGTACCT GA........ .......... .......... 256
ACACATGCAT ATGTAGTGTT ATATATCACT GCATCCCATG CAGGTTAATT TTAAGTACCC 10757
.......... .......... .......... .......... .......... .......... 256
AGATACTTCT TCTCATTTAG AATTTAGTTA AAATGACATC ATTCAGGTCA GTTGGCATCT 10817
.......... .......... .......... .......... .......... .......... 256
CCAGTACACT GCTTTTGTAA GTTGTATCAT AAATCCCATT TGCAATGAAA TTTTTGACTC 10877
.......... .......... .......... .......... .......... .......... 256
AAGTTGCAGC CTGTAACTTT TCTATATTTT TCGAATAAAG CTATCACCGT ACATGAAACC 10937
.......... .......... .......... .......... .......... .......... 256
TGCTTCTGTT AATGCCAAGG AGCGCACATT ATTTCCTGTA GACCGGCTTG GATGTTGAAC 10997
.......... .......... .......... .......... .......... .......... 256
AATTGGCACA TGCAAGTAGC AAAGAGCAGC CTTGTGCTTG CAACAATCTG GTCCACCTGT 11057
.......... .......... .......... .......... .......... .......... 256
GGATATGTTC GCTGTGAAAG AAACCAATTA GTCCTTGTAT GAAACATGGT ATTAGCGCTT 11117
.......... .......... .......... .......... .......... .......... 256
CATGAATAAA ACCACTGATT CTGATTTCTT ATTTTCAATG AATGGATGGG CATTACCAAA 11177
.......... .......... .......... .......... .......... .......... 256
GTTATCATGA TTAAAGATCT ATTTCATATA AGTTTATTTT TATACATTAG AGTTTATTTA 11237
.......... .......... .......... .......... .......... .......... 256
GAGAACAAGG TATATTTAGT TTTGGTAATT TTGTGAACTG CACTCAGACG ACTTTGGTAT 11297
.......... .......... .......... .......... .......... .......... 256
TCTTACTGTA ATTTTGTTTT GTTTTCCTAC AGAGCGCTTG TGTGCTAAAG TTGAAGAGGT 11357
|||||||| |||||||||| ||||||||||
.......... .......... .......... ..AGCGCTTG TGTGCTAAAG TTGAAGAGGT 284
CTGATTTCTG AGCTGCCTTA AACTCAGAAC GCAATTCCTA CAATTCTGGA AGTTTTGTAT 11417
|||| ||||| || | || || ||| | || || | | || ||| ||
CTGACTTCTG TTCTTAC-TA TTCT-GGAA- G--TTTTGTA TTA-GC-AGA AGTGAAATAA 337
TAGCAGAAGT GTAATAATGC TGTACACCAA CGGAAGCTTC AGTTCTTGCT GACATAGGTG 11477
| || | | | || | | || || |||||||||| |||||||||| ||| ||||||
T-GCTGTA-T GTCGCCAACA TTGACCCCCC CGGAAGCTTC AGTTCTTGCT GACGTAGGTG 395
AAAGTATTAA ACATGGATGT TTGATGGTGT TAAAGACGTC ATTTGATGCT AGACAATAGT 11537
|||| ||| | |||||||||| ||||||||| | || || |||||||||| ||||||||||
AAAGCATTCA ACATGGATGT TTGATGGTG- T----ACTTC ATTTGATGCT AGACAATAGT 450
CCTTACAAAC TTTGGTTCTC TGAGCAGAGT ATTCTCAAAA AAATGCAGGG GCCTATATTT 11597
| |||||||| |||| ||||| || || | | |||||||||| ||||| |||| ||||||| |
CTTTACAAAC TTTGCTTCTC TGGGC-TA-T ATTCTCAAAA AAATGGAGGG GCCTATA--T 506
TTTTTTGCCT CTTATGCTGA ATATGGATTA GGCTGATCAT TTTAGATGAA TATAAACGAG 11657
||||||| || | |||| ||| |||||| ||| ||| ||| || ||||| ||| |||||||||
TTTTTTG-CT CATATGATGA ATATGGGTTA GGCGGATTAT TTTAGGTGAG TATAAACGAT 565
ATCAGATGTA CACATTTATC ATTCTTTTAT ACGTGAAGGC TTGTTTTAGC GAGGCTGGAT 11717
|||||||||| |||| || || |||||||||| || ||||||| ||||||||| ||||||| ||
ATCAGATGTA CACACTTCTC ATTCTTTTAT ACATGAAGGC -TGTTTTAGC GAGGCTGTAT 624
GATTGAGACC AGTTGTAATG A 11738
|||| |||| ||| ||| |
GATTATGACC AGTCTGGATG A 645
********************************************************************************
EST sequence 13 +strand (File: 15853351+)
1 TACCTCAATG ATAGTATGCT ATGAATACCT TAAGCGCTTG TGTGTCTAAA TTGAAGAGGT
61 CTGAGTCNAG CTTANAACCT ATCNCTCTGA TGCTCCCCAA TGGTGGAAAT TTTGTACCCT
121 AAAATCCCAT AATGCTGTAT GCCCACACAC TGTGACCCCT GAGGAAGCTC TCTTTCTTGC
181 TGACTTGATA CTAGATATCT TTAAAATTTT AGTGCTCTTG AGGCTATTTT GAAAATGCCG
241 AGGTTCATAT TGTTTGCCTC TAACGATGAA TATGGATTAG GCAGAATGTT TTACATGATA
301 TATAAACGAA AGATTAGATA TGTTCACTTT TCATTCTTTT TAGCTCCAGC CTCCACGGGC
361 TTGTAATAGT GAGACCGGAG TATTGGAACC GGTTTCANGT GAGGAGGAGC CCAGGATATA
421 TATACCTTTG CTCGTTTCTC TTCGATGTAC TCCAAATATC CTTCTTCGAA TTTTTTTACG
481 ATGGTGCTGG TCTTCGTTTT GTATCCATAA TCCTTCGTAG CGAAATTATT TTCCAAAAAA
541 AAAAAAAAAA AAAA
Predicted gene structure (within gDNA segment 10334 to 13295):
Exon 1 10638 10669 ( 32 n); cDNA 1 32 ( 32 n); score: 0.875
Intron 1 10670 11329 ( 660 n); Pd: 0.961 (s: 0), Pa: 0.992 (s: 0.68)
Exon 2 11330 11474 ( 145 n); cDNA 33 170 ( 138 n); score: 0.572
Intron 2 11475 11504 ( 30 n); Pd: 0.443 (s: 0.50), Pa: 0.000 (s: 0.62) ??
Exon 3 11505 11699 ( 195 n); cDNA 171 353 ( 183 n); score: 0.662
PPA cDNA 535 554
MATCH 21326110+ 15853351+ 0.624 372 0.671 C
PGS_21326110+_15853351+ (10638 10669,11330 11474,11505 11699)
Alignment (genomic DNA sequence = upper lines):
AACCTCAATG ATAGTATGCT ACGAGTACCT GAGTATGTTT CGTCTTCCCT TGTCAAATGT 10697
||||||||| |||||||||| | || ||||| |
TACCTCAATG ATAGTATGCT ATGAATACCT TA........ .......... .......... 32
ACACATGCAT ATGTAGTGTT ATATATCACT GCATCCCATG CAGGTTAATT TTAAGTACCC 10757
.......... .......... .......... .......... .......... .......... 32
AGATACTTCT TCTCATTTAG AATTTAGTTA AAATGACATC ATTCAGGTCA GTTGGCATCT 10817
.......... .......... .......... .......... .......... .......... 32
CCAGTACACT GCTTTTGTAA GTTGTATCAT AAATCCCATT TGCAATGAAA TTTTTGACTC 10877
.......... .......... .......... .......... .......... .......... 32
AAGTTGCAGC CTGTAACTTT TCTATATTTT TCGAATAAAG CTATCACCGT ACATGAAACC 10937
.......... .......... .......... .......... .......... .......... 32
TGCTTCTGTT AATGCCAAGG AGCGCACATT ATTTCCTGTA GACCGGCTTG GATGTTGAAC 10997
.......... .......... .......... .......... .......... .......... 32
AATTGGCACA TGCAAGTAGC AAAGAGCAGC CTTGTGCTTG CAACAATCTG GTCCACCTGT 11057
.......... .......... .......... .......... .......... .......... 32
GGATATGTTC GCTGTGAAAG AAACCAATTA GTCCTTGTAT GAAACATGGT ATTAGCGCTT 11117
.......... .......... .......... .......... .......... .......... 32
CATGAATAAA ACCACTGATT CTGATTTCTT ATTTTCAATG AATGGATGGG CATTACCAAA 11177
.......... .......... .......... .......... .......... .......... 32
GTTATCATGA TTAAAGATCT ATTTCATATA AGTTTATTTT TATACATTAG AGTTTATTTA 11237
.......... .......... .......... .......... .......... .......... 32
GAGAACAAGG TATATTTAGT TTTGGTAATT TTGTGAACTG CACTCAGACG ACTTTGGTAT 11297
.......... .......... .......... .......... .......... .......... 32
TCTTACTGTA ATTTTGTTTT GTTTTCCTAC AGAGCGCTTG TGTGCTAAAG TTGAAGAGGT 11357
|||||||| |||| || ||||||||||
.......... .......... .......... ..AGCGCTTG TGTGTCTAAA TTGAAGAGGT 60
CTGATTTCTG AGCTGCCTTA AACTCAGAAC GCAATTCCTA CAATTCTGGA AGTTTTGTAT 11417
|||| || |||| || | ||| |||| |||| | |||||||
CTGA-GTC-N AGCTTANAAC CTATCNCTCT GATGCTCCC- CAATGGTGGA AATTTTGTA- 116
TAGCAGAAGT GTAATAATGC TGTACACCAA CGGAAGCTTC AGTTCTTGCT GACATAGGTG 11477
| || | ||||||| |||| || | | | || | || ||
-CCCTAAAAT CCCATAATGC TGTATGCCCA C--ACACTGT GACCCCTGAG GAAGCTC... 170
AAAGTATTAA ACATGGATGT TTGATGGTGT TAAAGACGTC ATTTGATGCT AGACAATAGT 11537
| | | | | | ||||| || || ||| |
.......... .......... .......TCT TTCTTGC-TG ACTTGATACT AG---ATA-T 198
CCTTACAAAC TTTGGTTCTC TGAGCAGAGT ATTCTCAAAA AAATGCAGGG GCCTATATTT 11597
| ||| ||| ||| || ||| | | || | ||| | | |||||| | | | | | |
CTTTA-AAAT TTTAGTGCTC T-TG-AGGCT ATT-T--TGA AAATGCCGAG G--T-TCATA 249
TTTTTTGCCT CTTATGCTGA ATATGGATTA GGCTGATCAT TTTAGATGA- ATATAAACG- 11655
|| ||||||| || | | ||| |||||||||| ||| || | |||| |||| |||||||||
TTGTTTGCCT CTAACGATGA ATATGGATTA GGCAGAATGT TTTACATGAT ATATAAACGA 309
-AGATCAGAT GTACACATTT ATCATTCTTT TATACGTGAA GGCTT 11699
|||| |||| | || || ||||||||| | || | | | ||
AAGATTAGAT ATGTTCACTT TTCATTCTTT T-TAGCTCCA GCCTC 353
********************************************************************************
EST sequence 62 +strand (File: SBtuc02-10-21.4748+)
1 GCACGAGGCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA
61 GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA
121 GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG
181 TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC
241 CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAGG GCCTCGCGGC
301 GGAGGGCGGA GGAGGAGCCG CTTCCGCATT CGACTCCGCC GGGTTCGGTG GGGCGGTGCA
361 GCCGCTCGGC TCCAGTGCCG TGGATTTCAG TATGCAGGAT GTCAAGGGCT CATCCAAGAG
421 CTTCCCCAAG CACGAGGCGA AGCATGTCTC TGACCATAAG AACGCTGCCC GGTGTGCGAA
481 ATTTAGTCCT GATGGGAAGT ATTTTGCAAC TGGGAGTGCT GATACATCCA TTAAGTTTTT
541 TGAGGTTGCT AAAATTAAGC AGACTATGGT AGGGGACTCC AAAGATGGTC CTGCCAGGCC
601 TGTGATTCGC ACATTTTATG ATCACACACA GGCCATCAAT GATCTGGATT TTCATCCTGA
661 GAGTCCAATA CTGATATCAG CTGCAAAAGA CAATACAATA AAATTTTTTG ACTTCTCAAA
721 GACCAATGCG AGGAAAGCGT TCAGAGTTAT TCAGGATACT C
Predicted gene structure (within gDNA segment 12020 to 14497):
Exon 1 12352 12640 ( 289 n); cDNA 1 289 ( 289 n); score: 0.983
Intron 1 12641 12722 ( 82 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 2 12723 12823 ( 101 n); cDNA 290 390 ( 101 n); score: 1.000
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 3 12921 12990 ( 70 n); cDNA 391 460 ( 70 n); score: 1.000
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 1.00), Pa: 0.978 (s: 1.00)
Exon 4 13197 13280 ( 84 n); cDNA 461 544 ( 84 n); score: 1.000
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 1.00), Pa: 1.000 (s: 1.00)
Exon 5 13381 13467 ( 87 n); cDNA 545 631 ( 87 n); score: 1.000
Intron 5 13468 13886 ( 419 n); Pd: 0.992 (s: 1.00), Pa: 0.939 (s: 1.00)
Exon 6 13887 13957 ( 71 n); cDNA 632 702 ( 71 n); score: 1.000
Intron 6 13958 14109 ( 152 n); Pd: 0.973 (s: 1.00), Pa: 0.989 (s: 1.00)
Exon 7 14110 14161 ( 52 n); cDNA 703 754 ( 52 n); score: 1.000
Intron 7 14162 14253 ( 92 n); Pd: 0.890 (s: 1.00), Pa: 0.830 (s: 0)
Exon 8 14254 14260 ( 7 n); cDNA 755 761 ( 7 n); score: 1.000
MATCH 21326110+ SBtuc02-10-21.4748+ 0.993 761 1.000 C
PGS_21326110+_SBtuc02-10-21.4748+ (12352 12640,12723 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14260)
Alignment (genomic DNA sequence = upper lines):
TTGCTAGTCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA 12411
| || || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCACGAGGCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA 60
GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA 12471
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA 120
GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG 12531
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG 180
TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC 12591
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC 240
CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAGG TCCCCCCACT 12651
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||
CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAG. .......... 289
TTCCCCTTCC TCCGGCAGTC TGGCCTAGGA TTTGTTCTGC ACGGGCCTAA ACCCTCACTG 12711
.......... .......... .......... .......... .......... .......... 289
TTGGTTCGCA GGGCCTCGCG GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG 12771
||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .GGCCTCGCG GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG 338
CCGGGTTCGG TGGGGCGGTG CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AGGTAAACCC 12831
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||
CCGGGTTCGG TGGGGCGGTG CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AG........ 390
CAACCTTGCG CCCCCGCGGT GTTGCCTAGT GGCAGTGTTT TTTCTGGTGC TGAACATTGG 12891
.......... .......... .......... .......... .......... .......... 390
TGAGGAGTGT TGACGCCGGT GCTGTGTAGT ATGCAGGATG TCAAGGGCTC ATCCAAGAGC 12951
| |||||||||| |||||||||| ||||||||||
.......... .......... .........T ATGCAGGATG TCAAGGGCTC ATCCAAGAGC 421
TTCCCCAAGC ACGAGGCGAA GCATGTCTCT GACCATAAGG TGCTTATGAT TCCAATTTTC 13011
|||||||||| |||||||||| |||||||||| |||||||||
TTCCCCAAGC ACGAGGCGAA GCATGTCTCT GACCATAAG. .......... .......... 460
CCTTGCAAAT GCACCACTTG AAAGTTGAAA CAATTTTTGT GTCAGACTCC TGTTTATCTG 13071
.......... .......... .......... .......... .......... .......... 460
AATATTTACT ACTGCTATTG CACATTTTGC ACTTATCACA GTACCATGAT TATGTAGACA 13131
.......... .......... .......... .......... .......... .......... 460
ACTTGGGATT GACCAACAAT AGATTTTACT GATGTTTATT GGCTTACCAT TGCATTTTTC 13191
.......... .......... .......... .......... .......... .......... 460
TGTAGAACGC TGCCCGGTGT GCGAAATTTA GTCCTGATGG GAAGTATTTT GCAACTGGGA 13251
||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.....AACGC TGCCCGGTGT GCGAAATTTA GTCCTGATGG GAAGTATTTT GCAACTGGGA 515
GTGCTGATAC ATCCATTAAG TTTTTTGAGG TGAACTTGAA ATTTGAATTG CCACTCAGGT 13311
|||||||||| |||||||||| |||||||||
GTGCTGATAC ATCCATTAAG TTTTTTGAG. .......... .......... .......... 544
TGCTAGGTGG GGCTTGTGCT GTTTTCTACT TAGTTGCAAC TTGTAACTCA CTATTGCTCT 13371
.......... .......... .......... .......... .......... .......... 544
GTCCTGCAGG TTGCTAAAAT TAAGCAGACT ATGGTAGGGG ACTCCAAAGA TGGTCCTGCC 13431
| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.........G TTGCTAAAAT TAAGCAGACT ATGGTAGGGG ACTCCAAAGA TGGTCCTGCC 595
AGGCCTGTGA TTCGCACATT TTATGATCAC ACACAGGTGA GCATGTATTG CTCATATATG 13491
|||||||||| |||||||||| |||||||||| ||||||
AGGCCTGTGA TTCGCACATT TTATGATCAC ACACAG.... .......... .......... 631
ACAGTTTATT TACTCTTCAA GGTCGTGAGA CTCTTTTCAA CACTTCCACA AGATTGCCTC 13551
.......... .......... .......... .......... .......... .......... 631
CGAGTTAGGT CTCCTGCAGT ATTTTTTTTC CTTTAATATG CGGAGAGCTG CATATCATTG 13611
.......... .......... .......... .......... .......... .......... 631
CATTATAGAA AGACTGAAAT ACATGGGTAG ATCAAATCCA CCTGCCACCA CAGACCACAC 13671
.......... .......... .......... .......... .......... .......... 631
TTATATACAC ACGCTCAACT CACGTTTAGC ACACTGGATG CACACCTAGC AGCTGCAATT 13731
.......... .......... .......... .......... .......... .......... 631
TGTAGTTAGA TATTTGCTTA CTGAGCTGTG TGGAGCATTG ACATGATATT CAATTTTTTA 13791
.......... .......... .......... .......... .......... .......... 631
ATAAACAACA TTTTTTTCCA TTTTCACTAG TTTCTACTTC ATTTCCCATT GCTCAAATTT 13851
.......... .......... .......... .......... .......... .......... 631
CCACTGTGCT CGTAAACATG ATTGATTTCT TGCAGGCCAT CAATGATCTG GATTTTCATC 13911
||||| |||||||||| ||||||||||
.......... .......... .......... .....GCCAT CAATGATCTG GATTTTCATC 656
CTGAGAGTCC AATACTGATA TCAGCTGCAA AAGACAATAC AATAAAGTAT GCTTATCCTT 13971
|||||||||| |||||||||| |||||||||| |||||||||| ||||||
CTGAGAGTCC AATACTGATA TCAGCTGCAA AAGACAATAC AATAAA.... .......... 702
GATGTCTACA CTCCGTGCTG TTAAATTGTC TATTTGAAGT GCTCATACTA GGATTAAGCA 14031
.......... .......... .......... .......... .......... .......... 702
TGATTTTTTA GGAATTTTTT GCGGTATTAA TTGCTATCTG TGTTATTGTT TTGTACATGA 14091
.......... .......... .......... .......... .......... .......... 702
AAAAATTTTG CTCAACAGAT TTTTTGACTT CTCAAAGACC AATGCGAGGA AAGCGTTCAG 14151
|| |||||||||| |||||||||| |||||||||| ||||||||||
.......... ........AT TTTTTGACTT CTCAAAGACC AATGCGAGGA AAGCGTTCAG 744
AGTTATTCAG GTTGTAAATT CTAGCAATCC AATCTCTCTA TATATCATGT AAAATGGTGT 14211
||||||||||
AGTTATTCAG .......... .......... .......... .......... .......... 754
GTTCATTGCA TTTAACCAGG CTCATTTGTT AATGCTTGGC AGGATACTC 14260
|||||||
.......... .......... .......... .......... ..GATACTC 761
********************************************************************************
EST sequence 292 -strand (File: ZMtuc02-12-23.14086-)
1 ACGGGATAGT GTAGTAGCAA GCATAGGAGT TTTGCTGTCT TCTTCAGCTT CAGTAGTTCA
61 GTCCAATCAC AGATCGCAGT ACAACCGAAC CCGCCGCACA AGGCATCCAA GGATTTGTTC
121 GGCCTTCGGA CTTCGGAGGG TAGGGAATCG AAGCCACGAG AAGTCGAGAA CAAAGCAATG
181 AACGAGGCGG TGCAGGAGGC GAAGCTGCTG CGGCAGGTGA ACGCGCTCAT CGTGGCACAC
241 CTCCGTAGCC AGAACCTCGG GCAGGCCGCA GCTGCCGTCG CCGCCGCCAC CATGACCCCC
301 ATCTCCGCTG CCGAATCCGT CCCCGCCAAT CACCTCCTGC GTCTCGTGGC CAAGGGCCTC
361 GCCGCGGAGC ACGGAGGAGG TGACGCCGCT TCCGCATTCG ACTCCGCCGG GTTCGGTGTG
421 GCGGTGCAGC CGCCCGGCTC CAGTGCCGTG GATTTCAGTA TTCAGGATGT CAAGGGCTCA
481 TCCAAAAGCT TCCCCAAGCA CGAGGTGAAG CATGTCTCTG ACCATAAGAA CGCTGCCCGG
541 TGTGTGAAAT TTAGTCCTGA TGGAAAGTAT TTTGCAACTG GGAGTGCTGA TACATCCATT
601 AAGTTTTTTG AGGTTGCTAA GATTAAGCAG ACTATGGTAG GAGACTCTAA AGATGGCCCT
661 GCCAGGCCTG TGATACGGAC ATTTTATGAT CACACACAGG CCATCAATGA TCTGGATTTT
721 CATCCTGAGA GTCCAATACT GATATCAGCT GCAAAAGACA GTACAATAAG ATTCTTTGAC
781 TTTTCAAAAA CCAATGCGAG GAAAGCGTTC AGAGTTATTC AGGATACTCA TAATGTTAGA
841 TCTGTATGTT TTCATCCTTG TGGGGATTTC CTTTTAGCAG GGACTGATCA CCCAGTCGCT
901 CATTTATATG ATATAAATAC TTTTACATGC TACTTATCAG CAAATGCACA GGATTCTAGT
961 TCTCCCCGAC AGCAACG
Predicted gene structure (within gDNA segment 11873 to 15125):
Exon 1 12380 12640 ( 261 n); cDNA 80 354 ( 275 n); score: 0.835
Intron 1 12641 12722 ( 82 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.81)
Exon 2 12723 12823 ( 101 n); cDNA 355 458 ( 104 n); score: 0.891
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.96), Pa: 0.000 (s: 0.94)
Exon 3 12921 12990 ( 70 n); cDNA 459 528 ( 70 n); score: 0.957
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.96), Pa: 0.978 (s: 0.96)
Exon 4 13197 13280 ( 84 n); cDNA 529 612 ( 84 n); score: 0.976
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 0.98), Pa: 1.000 (s: 0.92)
Exon 5 13381 13467 ( 87 n); cDNA 613 699 ( 87 n); score: 0.931
Intron 5 13468 13886 ( 419 n); Pd: 0.992 (s: 0.94), Pa: 0.939 (s: 1.00)
Exon 6 13887 13957 ( 71 n); cDNA 700 770 ( 71 n); score: 0.972
Intron 6 13958 14109 ( 152 n); Pd: 0.973 (s: 0.96), Pa: 0.989 (s: 0.94)
Exon 7 14110 14161 ( 52 n); cDNA 771 822 ( 52 n); score: 0.942
Intron 7 14162 14253 ( 92 n); Pd: 0.890 (s: 0.94), Pa: 0.830 (s: 0.98)
Exon 8 14254 14311 ( 58 n); cDNA 823 880 ( 58 n); score: 0.983
Intron 8 14312 14684 ( 373 n); Pd: 0.979 (s: 0.98), Pa: 0.910 (s: 0.98)
Exon 9 14685 14779 ( 95 n); cDNA 881 975 ( 95 n); score: 0.926
MATCH 21326110+ ZMtuc02-12-23.14086- 0.911 879 0.900 C
PGS_21326110+_ZMtuc02-12-23.14086- (12380 12640,12723 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779)
Alignment (genomic DNA sequence = upper lines):
TCACAACTGA ATCCGCCGCG CAAGGCATCC AAGGATTTGT TC-G---TC- --CTTCGGAG 12432
| ||||| || | ||||||| |||||||||| |||||||||| || | || ||||||||
T-ACAACCGA ACCCGCCGCA CAAGGCATCC AAGGATTTGT TCGGCCTTCG GACTTCGGAG 138
GGTGGGGAAT CGAAG---C- -G-A--CGAA AACGAAGCAA TGAACGAGGC GGTGCAGGAG 12484
||| |||||| ||||| | | | ||| ||| |||||| |||||||||| ||||||||||
GGTAGGGAAT CGAAGCCACG AGAAGTCGAG AACAAAGCAA TGAACGAGGC GGTGCAGGAG 198
GCGAAGCTGC TGCGGCAGGT GAACGCGCTC ATCGTGGCGC ACCTCCGTAG CCAGAACCTC 12544
|||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ||||||||||
GCGAAGCTGC TGCGGCAGGT GAACGCGCTC ATCGTGGCAC ACCTCCGTAG CCAGAACCTC 258
GGGCAGGCCG CAGCCGCCGT CGCCGCCGCC ACCATGACCC CCATCTCCGC CGCCGAATCC 12604
|||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||
GGGCAGGCCG CAGCTGCCGT CGCCGCCGCC ACCATGACCC CCATCTCCGC TGCCGAATCC 318
GTCCCCGCAA ATCAACTCCT ACGTCTCGTG GCCAAGGTCC CCCCACTTTC CCCTTCCTCC 12664
|||||||| | |||| ||||| ||||||||| ||||||
GTCCCCGCCA ATCACCTCCT GCGTCTCGTG GCCAAG.... .......... .......... 354
GGCAGTCTGG CCTAGGATTT GTTCTGCACG GGCCTAAACC CTCACTGTTG GTTCGCAGGG 12724
||
.......... .......... .......... .......... .......... ........GG 356
CCTCGCGGCG GAGGGCGGAG GA-G-GA-GC CGCTTCCGCA TTCGACTCCG CCGGGTTCGG 12781
|||||| ||| ||| ||||| || | || || |||||||||| |||||||||| ||||||||||
CCTCGCCGCG GAGCACGGAG GAGGTGACGC CGCTTCCGCA TTCGACTCCG CCGGGTTCGG 416
TGGGGCGGTG CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AGGTAAACCC CAACCTTGCG 12841
|| ||||||| ||||||| || |||||||||| |||||||||| ||
TGTGGCGGTG CAGCCGCCCG GCTCCAGTGC CGTGGATTTC AG........ .......... 458
CCCCCGCGGT GTTGCCTAGT GGCAGTGTTT TTTCTGGTGC TGAACATTGG TGAGGAGTGT 12901
.......... .......... .......... .......... .......... .......... 458
TGACGCCGGT GCTGTGTAGT ATGCAGGATG TCAAGGGCTC ATCCAAGAGC TTCCCCAAGC 12961
| || ||||||| |||||||||| |||||| ||| ||||||||||
.......... .........T ATTCAGGATG TCAAGGGCTC ATCCAAAAGC TTCCCCAAGC 499
ACGAGGCGAA GCATGTCTCT GACCATAAGG TGCTTATGAT TCCAATTTTC CCTTGCAAAT 13021
|||||| ||| |||||||||| |||||||||
ACGAGGTGAA GCATGTCTCT GACCATAAG. .......... .......... .......... 528
GCACCACTTG AAAGTTGAAA CAATTTTTGT GTCAGACTCC TGTTTATCTG AATATTTACT 13081
.......... .......... .......... .......... .......... .......... 528
ACTGCTATTG CACATTTTGC ACTTATCACA GTACCATGAT TATGTAGACA ACTTGGGATT 13141
.......... .......... .......... .......... .......... .......... 528
GACCAACAAT AGATTTTACT GATGTTTATT GGCTTACCAT TGCATTTTTC TGTAGAACGC 13201
|||||
.......... .......... .......... .......... .......... .....AACGC 533
TGCCCGGTGT GCGAAATTTA GTCCTGATGG GAAGTATTTT GCAACTGGGA GTGCTGATAC 13261
|||||||||| | |||||||| |||||||||| ||||||||| |||||||||| ||||||||||
TGCCCGGTGT GTGAAATTTA GTCCTGATGG AAAGTATTTT GCAACTGGGA GTGCTGATAC 593
ATCCATTAAG TTTTTTGAGG TGAACTTGAA ATTTGAATTG CCACTCAGGT TGCTAGGTGG 13321
|||||||||| |||||||||
ATCCATTAAG TTTTTTGAG. .......... .......... .......... .......... 612
GGCTTGTGCT GTTTTCTACT TAGTTGCAAC TTGTAACTCA CTATTGCTCT GTCCTGCAGG 13381
|
.......... .......... .......... .......... .......... .........G 613
TTGCTAAAAT TAAGCAGACT ATGGTAGGGG ACTCCAAAGA TGGTCCTGCC AGGCCTGTGA 13441
||||||| || |||||||||| |||||||| | |||| ||||| ||| |||||| ||||||||||
TTGCTAAGAT TAAGCAGACT ATGGTAGGAG ACTCTAAAGA TGGCCCTGCC AGGCCTGTGA 673
TTCGCACATT TTATGATCAC ACACAGGTGA GCATGTATTG CTCATATATG ACAGTTTATT 13501
| || ||||| |||||||||| ||||||
TACGGACATT TTATGATCAC ACACAG.... .......... .......... .......... 699
TACTCTTCAA GGTCGTGAGA CTCTTTTCAA CACTTCCACA AGATTGCCTC CGAGTTAGGT 13561
.......... .......... .......... .......... .......... .......... 699
CTCCTGCAGT ATTTTTTTTC CTTTAATATG CGGAGAGCTG CATATCATTG CATTATAGAA 13621
.......... .......... .......... .......... .......... .......... 699
AGACTGAAAT ACATGGGTAG ATCAAATCCA CCTGCCACCA CAGACCACAC TTATATACAC 13681
.......... .......... .......... .......... .......... .......... 699
ACGCTCAACT CACGTTTAGC ACACTGGATG CACACCTAGC AGCTGCAATT TGTAGTTAGA 13741
.......... .......... .......... .......... .......... .......... 699
TATTTGCTTA CTGAGCTGTG TGGAGCATTG ACATGATATT CAATTTTTTA ATAAACAACA 13801
.......... .......... .......... .......... .......... .......... 699
TTTTTTTCCA TTTTCACTAG TTTCTACTTC ATTTCCCATT GCTCAAATTT CCACTGTGCT 13861
.......... .......... .......... .......... .......... .......... 699
CGTAAACATG ATTGATTTCT TGCAGGCCAT CAATGATCTG GATTTTCATC CTGAGAGTCC 13921
||||| |||||||||| |||||||||| ||||||||||
.......... .......... .....GCCAT CAATGATCTG GATTTTCATC CTGAGAGTCC 734
AATACTGATA TCAGCTGCAA AAGACAATAC AATAAAGTAT GCTTATCCTT GATGTCTACA 13981
|||||||||| |||||||||| |||||| ||| |||||
AATACTGATA TCAGCTGCAA AAGACAGTAC AATAAG.... .......... .......... 770
CTCCGTGCTG TTAAATTGTC TATTTGAAGT GCTCATACTA GGATTAAGCA TGATTTTTTA 14041
.......... .......... .......... .......... .......... .......... 770
GGAATTTTTT GCGGTATTAA TTGCTATCTG TGTTATTGTT TTGTACATGA AAAAATTTTG 14101
.......... .......... .......... .......... .......... .......... 770
CTCAACAGAT TTTTTGACTT CTCAAAGACC AATGCGAGGA AAGCGTTCAG AGTTATTCAG 14161
|| | |||||||| ||||| ||| |||||||||| |||||||||| ||||||||||
........AT TCTTTGACTT TTCAAAAACC AATGCGAGGA AAGCGTTCAG AGTTATTCAG 822
GTTGTAAATT CTAGCAATCC AATCTCTCTA TATATCATGT AAAATGGTGT GTTCATTGCA 14221
.......... .......... .......... .......... .......... .......... 822
TTTAACCAGG CTCATTTGTT AATGCTTGGC AGGATACTCA TAATGTTAGA TCTGTATGTT 14281
|||||||| |||||||||| ||||||||||
.......... .......... .......... ..GATACTCA TAATGTTAGA TCTGTATGTT 850
TTCATCCTTG TGGGGATTAC CTTTTAGCAG GTACTATGAT CTTTTCACTA AATTTAAATT 14341
|||||||||| |||||||| | ||||||||||
TTCATCCTTG TGGGGATTTC CTTTTAGCAG .......... .......... .......... 880
TGATTTCTAG TTCTGCTGTG ATTAACTGAT TCTTGATGTC TGATATCAGT TTGATATGCT 14401
.......... .......... .......... .......... .......... .......... 880
CTGATTTTTA TGCATTATAA GTTGTTAACA TGTTTTCAGT TGTTATCTGT AAAGTAATTT 14461
.......... .......... .......... .......... .......... .......... 880
AATCATTTCA CCAAAACAAT TTGATATTTG GGCTTAAGAA TTTGGATTTC GTTCCTGGAT 14521
.......... .......... .......... .......... .......... .......... 880
CAACAGTTTC TGTCTCGTGG GCATTTGAAA AATACTGCAA GCATATCGTA TGGAATTTTC 14581
.......... .......... .......... .......... .......... .......... 880
TTCTTACATA TAGTCAAATA TTAACATTCA AATATGTATT TTTTTTAAAA AAACTCATTT 14641
.......... .......... .......... .......... .......... .......... 880
TCATATATTT GGAAGCAAGT GACACTGATA AAATTATTTG CAGGGACTGA TCACCCAGTT 14701
||||||| |||||||||
.......... .......... .......... .......... ...GGACTGA TCACCCAGTC 897
GCTCATTTAT ATGATATAAA TACTTTTACA TGCTACTTAT CAGCAAATGC ACAGGATTCT 14761
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTCATTTAT ATGATATAAA TACTTTTACA TGCTACTTAT CAGCAAATGC ACAGGATTCT 957
AGTTCTCCCA TTAACCAG 14779
||||||||| | ||
AGTTCTCCCC GACAGCAA 975
********************************************************************************
EST sequence 303 -strand (File: HVtuc02-11-10.2556-)
1 GGAACACTGA ACACATTTGC TCTGAAGCTT GAGTCCACTC CCACTCCATT TCACAGTTGG
61 CCCCACCCCC ACGGGAGGAC GGAGGGGAGG GCCGAGATGG ACGCGGCGGT GCAGGAGGCC
121 AAGCTGCTGC GGCAGGTGAA CGCCCTCATC GTGGCGCACC TCCGCGACCA GAACCTCACG
181 CAGGCCGCCG CCGCCGTCGC CGCCGCCACC ATGACCCCCA AGGCCGACGC CTCCCTCCCC
241 AACCACCTCC TCCGCCTCGT CGCCAAGGGC CTCGCGGCTG AGCGGGAGGA GGCGGCCAGG
301 GGAGGCGGAG CTCCCCCCGC GTTTGACTCC GCTGGCGGCG GTGGGCTGGC GCGCCCGCTC
361 GGCACCAGCG CCGTGGATTT CAGTGTGCAG AATGTCAGGG GCCCGTCCAA GACTTTCCCC
421 AAGCACGAGA CCAGGCACAT CTCCGATCAT AAGAATGTTG CCAGATGTGC GAAATTTAGT
481 CCTGATGGGA AACATTTTGC AACTGGAAGT GGGGACACAT CCATTAAGTT CTTTGAGGTA
541 TCAAAAATTA AGCAGACGAT GTTAGGAGAC TCCAAAGAAG GCCCTGGCCG ACCTGTGGTC
601 CGTACATTTT ATGACCATGT GCAGCCCATC AATGATCTGG ATTTCCATCC TATTAGCCCA
661 ATACTGATAT CTGCAGCAAA AGATAATACG ATAAAGTTCT TTGAGTTCTC CAAAACTGCT
721 GCAAGAAAAG CATTCAGAGT TATTCAGGAT ACTCATAATG TTAGGTCTGT ATGTTTTCAT
781 CCTTGCGGTG ATTACATTTT AGCAGGGACT GATCACCCAG TAGCTCATCT CTATGATGTA
841 AACACTTTCA CATGCTTCTT ATCCGCAAAT CCGCAGGACT CTAGTGCTGC CATCAACCAG
901 GTGCGCTCTC GGGTACTGGG AGCATGTATG TGACTGCTTC TAAGGATGGT TCTCTGCGCA
961 TCTGGGATGG AGTATCTGCT GAATGTGTTC GTCCCATAAT TGGGGCACAT GGATCTGTAG
1021 AAGCTACTAG TGCAATTTTC ACCAAAGACG AGAGGTACAT CCTATCCAGT GGGAAGGATT
1081 CGTGTATAAA GTTATGGGAA GTTGGCACCG GAAGACTTGT GAAGCAATAT CCAGGTGTTG
1141 TTAATACACA ATTCCGGTGT CAGGCTGTCT TCAACGAAAC CGAGGAGTTT GTACTATCAA
1201 CCGACGAGCA AAACAACGAG GTTGTCGTCT GGGACGCCCT TACTTCTGAA AGGGTGGCAA
1261 GATTGCCGTC TGGCCACACC GGCGCCCCTA GGTGGCTGGA GCACTCCCCT GTAGAGCCAG
1321 TGTTTGTTAC ATGCGGAAAC GATCGATCCG TCAGATTCTG GAAATAAACG GTGTAGATTC
1381 AATTCAACCC TGGCATTTAA ATCATGAAGT TTGTTGTATC ATGAGTACTT CAGGGTAAAA
1441 GAAAGGAATA CTTGTAATTG TAGTGGCTGT ACTTATACAT GCTGTTGATA CATCTTCTTC
1501 TAAAAAAAAA AAAAAAAAAA AAAAAA
Predicted gene structure (within gDNA segment 11647 to 17229):
Exon 1 12464 12648 ( 185 n); cDNA 97 275 ( 179 n); score: 0.843
Intron 1 12649 12713 ( 65 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.62)
Exon 2 12714 12823 ( 110 n); cDNA 276 383 ( 108 n); score: 0.718
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.80), Pa: 0.000 (s: 0.82)
Exon 3 12921 12990 ( 70 n); cDNA 384 453 ( 70 n); score: 0.800
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.80), Pa: 0.978 (s: 0.88)
Exon 4 13197 13280 ( 84 n); cDNA 454 537 ( 84 n); score: 0.869
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 0.86), Pa: 1.000 (s: 0.82)
Exon 5 13381 13467 ( 87 n); cDNA 538 624 ( 87 n); score: 0.782
Intron 5 13468 13886 ( 419 n); Pd: 0.992 (s: 0.74), Pa: 0.939 (s: 0.86)
Exon 6 13887 13957 ( 71 n); cDNA 625 695 ( 71 n); score: 0.859
Intron 6 13958 14109 ( 152 n); Pd: 0.973 (s: 0.84), Pa: 0.989 (s: 0.78)
Exon 7 14110 14161 ( 52 n); cDNA 696 747 ( 52 n); score: 0.788
Intron 7 14162 14253 ( 92 n); Pd: 0.890 (s: 0.80), Pa: 0.830 (s: 0.92)
Exon 8 14254 14311 ( 58 n); cDNA 748 805 ( 58 n); score: 0.931
Intron 8 14312 14684 ( 373 n); Pd: 0.979 (s: 0.92), Pa: 0.910 (s: 0.88)
Exon 9 14685 14779 ( 95 n); cDNA 806 900 ( 95 n); score: 0.853
Intron 9 14780 14879 ( 100 n); Pd: 0.995 (s: 0.84), Pa: 0.000 (s: 0.88)
Exon 10 14880 15034 ( 155 n); cDNA 901 1054 ( 154 n); score: 0.903
Intron 10 15035 15519 ( 485 n); Pd: 0.794 (s: 0.92), Pa: 0.933 (s: 0.84)
Exon 11 15520 15628 ( 109 n); cDNA 1055 1163 ( 109 n); score: 0.807
Intron 11 15629 15846 ( 218 n); Pd: 1.000 (s: 0.78), Pa: 0.995 (s: 0.82)
Exon 12 15847 15903 ( 57 n); cDNA 1164 1220 ( 57 n); score: 0.825
Intron 12 15904 15975 ( 72 n); Pd: 0.991 (s: 0.80), Pa: 0.993 (s: 0.86)
Exon 13 15976 16159 ( 184 n); cDNA 1221 1402 ( 182 n); score: 0.777
PPA cDNA 1502 1526
MATCH 21326110+ HVtuc02-11-10.2556- 0.825 1317 0.863 C
PGS_21326110+_HVtuc02-11-10.2556- (12464 12648,12714 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15034,15520 15628,15847 15903,15976 16159)
Alignment (genomic DNA sequence = upper lines):
ATGAACGAGG CGGTGCAGGA GGCGAAGCTG CTGCGGCAGG TGAACGCGCT CATCGTGGCG 12523
||| ||| || |||||||||| ||| |||||| |||||||||| ||||||| || ||||||||||
ATGGACGCGG CGGTGCAGGA GGCCAAGCTG CTGCGGCAGG TGAACGCCCT CATCGTGGCG 156
CACCTCCGTA GCCAGAACCT CGGGCAGGCC GCAGCCGCCG TCGCCGCCGC CACCATGACC 12583
|||||||| ||||||||| | ||||||| || ||||||| |||||||||| ||||||||||
CACCTCCGCG ACCAGAACCT CACGCAGGCC GCCGCCGCCG TCGCCGCCGC CACCATGACC 216
CCCATCTCCG CCGCCGAATC CGTCCCCGCA AATCAACTCC TACGTCTCGT GGCCAAGGTC 12643
|||| ||| |||| || | | ||| | || || |||| | || ||||| ||||||| |
CCCAAGGCCG ACGCC---TC CCT-CCC-C- AACCACCTCC TCCGCCTCGT CGCCAAGGGC 270
CCCCCACTTT CCCCTTCCTC CGGCAGTCTG GCCTAGGATT TGTTCTGCAC GGGCCTAAAC 12703
| | |
CTCGC..... .......... .......... .......... .......... .......... 275
CCTCACTGTT GGTTCGCAGG GCCTCGCGGC GGAGGGCGGA GGAGGAGCCG CTTCCGCATT 12763
|| | | || | | ||| || | ||| || ||||| | |||| ||
.......... GGCT-G-AGC GGGAGGAGGC GGCCAGGGGA GGCGGAGCTC CCCCCGCGTT 323
CGACTCCGCC GGGTTCGGTG GGGCGGTGCA GCCGCTCGGC TCCAGTGCCG TGGATTTCAG 12823
|||||||| || ||||| || || || ||||||||| |||| |||| ||||||||||
TGACTCCGCT GGCGGCGGTG GGCTGGCGCG CCCGCTCGGC ACCAGCGCCG TGGATTTCAG 383
GTAAACCCCA ACCTTGCGCC CCCGCGGTGT TGCCTAGTGG CAGTGTTTTT TCTGGTGCTG 12883
.......... .......... .......... .......... .......... .......... 383
AACATTGGTG AGGAGTGTTG ACGCCGGTGC TGTGTAGTAT GCAGGATGTC AAGGGCTCAT 12943
| | |||| ||||| | |||| | |
.......... .......... .......... .......TGT GCAGAATGTC AGGGGCCCGT 406
CCAAGAGCTT CCCCAAGCAC GAGGCGAAGC ATGTCTCTGA CCATAAGGTG CTTATGATTC 13003
|||||| || |||||||||| ||| | | || | |||| || ||||||
CCAAGACTTT CCCCAAGCAC GAGACCAGGC ACATCTCCGA TCATAAG... .......... 453
CAATTTTCCC TTGCAAATGC ACCACTTGAA AGTTGAAACA ATTTTTGTGT CAGACTCCTG 13063
.......... .......... .......... .......... .......... .......... 453
TTTATCTGAA TATTTACTAC TGCTATTGCA CATTTTGCAC TTATCACAGT ACCATGATTA 13123
.......... .......... .......... .......... .......... .......... 453
TGTAGACAAC TTGGGATTGA CCAACAATAG ATTTTACTGA TGTTTATTGG CTTACCATTG 13183
.......... .......... .......... .......... .......... .......... 453
CATTTTTCTG TAGAACGCTG CCCGGTGTGC GAAATTTAGT CCTGATGGGA AGTATTTTGC 13243
|| | || || | ||||| |||||||||| |||||||||| | |||||||
.......... ...AATGTTG CCAGATGTGC GAAATTTAGT CCTGATGGGA AACATTTTGC 500
AACTGGGAGT GCTGATACAT CCATTAAGTT TTTTGAGGTG AACTTGAAAT TTGAATTGCC 13303
|||||| ||| | || |||| |||||||||| ||||||
AACTGGAAGT GGGGACACAT CCATTAAGTT CTTTGAG... .......... .......... 537
ACTCAGGTTG CTAGGTGGGG CTTGTGCTGT TTTCTACTTA GTTGCAACTT GTAACTCACT 13363
.......... .......... .......... .......... .......... .......... 537
ATTGCTCTGT CCTGCAGGTT GCTAAAATTA AGCAGACTAT GGTAGGGGAC TCCAAAGATG 13423
|| | ||||||| ||||||| || | |||| ||| |||||||| |
.......... .......GTA TCAAAAATTA AGCAGACGAT GTTAGGAGAC TCCAAAGAAG 580
GTCCTGCCAG GCCTGTGATT CGCACATTTT ATGATCACAC ACAGGTGAGC ATGTATTGCT 13483
| |||| | | |||||| | || ||||||| |||| || |||
GCCCTGGCCG ACCTGTGGTC CGTACATTTT ATGACCATGT GCAG...... .......... 624
CATATATGAC AGTTTATTTA CTCTTCAAGG TCGTGAGACT CTTTTCAACA CTTCCACAAG 13543
.......... .......... .......... .......... .......... .......... 624
ATTGCCTCCG AGTTAGGTCT CCTGCAGTAT TTTTTTTCCT TTAATATGCG GAGAGCTGCA 13603
.......... .......... .......... .......... .......... .......... 624
TATCATTGCA TTATAGAAAG ACTGAAATAC ATGGGTAGAT CAAATCCACC TGCCACCACA 13663
.......... .......... .......... .......... .......... .......... 624
GACCACACTT ATATACACAC GCTCAACTCA CGTTTAGCAC ACTGGATGCA CACCTAGCAG 13723
.......... .......... .......... .......... .......... .......... 624
CTGCAATTTG TAGTTAGATA TTTGCTTACT GAGCTGTGTG GAGCATTGAC ATGATATTCA 13783
.......... .......... .......... .......... .......... .......... 624
ATTTTTTAAT AAACAACATT TTTTTCCATT TTCACTAGTT TCTACTTCAT TTCCCATTGC 13843
.......... .......... .......... .......... .......... .......... 624
TCAAATTTCC ACTGTGCTCG TAAACATGAT TGATTTCTTG CAGGCCATCA ATGATCTGGA 13903
|||||| ||||||||||
.......... .......... .......... .......... ...CCCATCA ATGATCTGGA 641
TTTTCATCCT GAGAGTCCAA TACTGATATC AGCTGCAAAA GACAATACAA TAAAGTATGC 13963
||| |||||| || |||| |||||||||| || |||||| || ||||| | ||||
TTTCCATCCT ATTAGCCCAA TACTGATATC TGCAGCAAAA GATAATACGA TAAA...... 695
TTATCCTTGA TGTCTACACT CCGTGCTGTT AAATTGTCTA TTTGAAGTGC TCATACTAGG 14023
.......... .......... .......... .......... .......... .......... 695
ATTAAGCATG ATTTTTTAGG AATTTTTTGC GGTATTAATT GCTATCTGTG TTATTGTTTT 14083
.......... .......... .......... .......... .......... .......... 695
GTACATGAAA AAATTTTGCT CAACAGATTT TTTGACTTCT CAAAGACCAA TGCGAGGAAA 14143
|| ||||| |||| | || || ||| || |||
.......... .......... ......GTTC TTTGAGTTCT CCAAAACTGC TGCAAGAAAA 729
GCGTTCAGAG TTATTCAGGT TGTAAATTCT AGCAATCCAA TCTCTCTATA TATCATGTAA 14203
|| ||||||| ||||||||
GCATTCAGAG TTATTCAG.. .......... .......... .......... .......... 747
AATGGTGTGT TCATTGCATT TAACCAGGCT CATTTGTTAA TGCTTGGCAG GATACTCATA 14263
||||||||||
.......... .......... .......... .......... .......... GATACTCATA 757
ATGTTAGATC TGTATGTTTT CATCCTTGTG GGGATTACCT TTTAGCAGGT ACTATGATCT 14323
||||||| || |||||||||| |||||||| | | |||||| | ||||||||
ATGTTAGGTC TGTATGTTTT CATCCTTGCG GTGATTACAT TTTAGCAG.. .......... 805
TTTCACTAAA TTTAAATTTG ATTTCTAGTT CTGCTGTGAT TAACTGATTC TTGATGTCTG 14383
.......... .......... .......... .......... .......... .......... 805
ATATCAGTTT GATATGCTCT GATTTTTATG CATTATAAGT TGTTAACATG TTTTCAGTTG 14443
.......... .......... .......... .......... .......... .......... 805
TTATCTGTAA AGTAATTTAA TCATTTCACC AAAACAATTT GATATTTGGG CTTAAGAATT 14503
.......... .......... .......... .......... .......... .......... 805
TGGATTTCGT TCCTGGATCA ACAGTTTCTG TCTCGTGGGC ATTTGAAAAA TACTGCAAGC 14563
.......... .......... .......... .......... .......... .......... 805
ATATCGTATG GAATTTTCTT CTTACATATA GTCAAATATT AACATTCAAA TATGTATTTT 14623
.......... .......... .......... .......... .......... .......... 805
TTTTAAAAAA ACTCATTTTC ATATATTTGG AAGCAAGTGA CACTGATAAA ATTATTTGCA 14683
.......... .......... .......... .......... .......... .......... 805
GGGACTGATC ACCCAGTTGC TCATTTATAT GATATAAATA CTTTTACATG CTACTTATCA 14743
||||||||| ||||||| || |||| | ||| ||| |||| | |||| ||||| || ||||||
.GGACTGATC ACCCAGTAGC TCATCTCTAT GATGTAAACA CTTTCACATG CTTCTTATCC 864
GCAAATGCAC AGGATTCTAG TTCTCCCATT AACCAGGTAG CTTTTCTCTT TCCTTCTGAT 14803
|||||| | | |||| ||||| | || |||| ||||||
GCAAATCCGC AGGACTCTAG TGCTGCCATC AACCAG.... .......... .......... 900
TCACAAGCAT TAGATTGCAT TGGTTATATT CTCATCAAAG TTCTCCGCCA GCCATGCTTA 14863
.......... .......... .......... .......... .......... .......... 900
CTGATGTTGC TGCCAGGTAC GCTACTCCTG TACTGGGAGC TTGTATGTGA CTGCTTCTAA 14923
|| | ||| ||| | |||||||||| ||||||||| ||||||||||
.......... ......GTGC GCT-CTCGGG TACTGGGAGC ATGTATGTGA CTGCTTCTAA 943
AGATGGTTCT CTGCGCATTT GGGATGGAGT ATCTGCTGAA TGTGTTCGAC CTATTATTGG 14983
||||||||| |||||||| | |||||||||| |||||||||| |||||||| | | || |||||
GGATGGTTCT CTGCGCATCT GGGATGGAGT ATCTGCTGAA TGTGTTCGTC CCATAATTGG 1003
AGCACATGGA TCTGCAGAAG CTACTAGCGC AATTTTCACC AGAGATGAGA GGTAAGCGAG 15043
||||||||| |||| ||||| ||||||| || |||||||||| | ||| |||| |
GGCACATGGA TCTGTAGAAG CTACTAGTGC AATTTTCACC AAAGACGAGA G......... 1054
CTACCAGCAT GTCTAAGGTG CTCTTCCCTC AAGATAAAAT CCAGTCATTG TTTGGTTTGA 15103
.......... .......... .......... .......... .......... .......... 1054
AGAACAGAGA GAAAGGCATA TGCTGTATGA TTCAAGACAG TAACTACTTC AAACCCTGTT 15163
.......... .......... .......... .......... .......... .......... 1054
TGGAATGTGG GAATCTTGTA GTGATTCTGA ATGATTTATA ACATGTCCTG GATAATTTCC 15223
.......... .......... .......... .......... .......... .......... 1054
TGTGTTTCAG ACGTGTCGTA ACTTTATAAC ACGAATAACT CTTTCTCCTT TACCCTACTA 15283
.......... .......... .......... .......... .......... .......... 1054
TTTCACCACT AAACAACTAA CTTGCCTATA AACACTTTTT AGACTTCTTC TGAAAGGCCT 15343
.......... .......... .......... .......... .......... .......... 1054
AGTGTTTATG TGGTTATATG CAGCGTGAAT GCACTTGCAT ATAAGATTGA TCTAAAAAAT 15403
.......... .......... .......... .......... .......... .......... 1054
TGATGTAGTG AACTTTGACT ACCCGAAGTA TATGCTTAGA TAGTTCATGG ATTTCTTTCA 15463
.......... .......... .......... .......... .......... .......... 1054
TAAAACTGCA CACTGTATTC TGGTTATCTG TTATGAAGTT TACTACGTTC TTTCAGGTAT 15523
|||
.......... .......... .......... .......... .......... ......GTAC 1058
GTCCTATCTT GTGGGAAAGA TTCTTGTGTC AAGTTATGGG AAGTTGGCAC TGGACGACTT 15583
||||||| ||||||| || ||| ||| | |||||||||| |||||||||| ||| |||||
ATCCTATCCA GTGGGAAGGA TTCGTGTATA AAGTTATGGG AAGTTGGCAC CGGAAGACTT 1118
GTGAAGCAAT ATGCAGGAGC CATTCGCAGA CAATTTCGTT GTCAGGTTAG TTTCTCTGTG 15643
|||||||||| || |||| | || | | ||||| || | |||||
GTGAAGCAAT ATCCAGGTGT TGTTAATACA CAATTCCGGT GTCAG..... .......... 1163
TTTCTATAAG ATTATTATTT TTTCCTGATT TAAATTTACT CGTGTGCCAT ATATATTATT 15703
.......... .......... .......... .......... .......... .......... 1163
TTTACCCAAA ATTTTAGGAA ACAAAATATT GCAATTCTTT AATTTGAAAA TAGGCTGGTT 15763
.......... .......... .......... .......... .......... .......... 1163
TGAGCTTGCA GCTTAGGATA ACAACATACC TAACCTTGCT ATGATAGACA ATAAATATGA 15823
.......... .......... .......... .......... .......... .......... 1163
TAATAACTGT TCTTACTATC CAGGCTGTCT TCAATGAAAC CGAAGAATTT GTTCTATCAG 15883
||||||| |||| ||||| ||| || ||| || ||||||
.......... .......... ...GCTGTCT TCAACGAAAC CGAGGAGTTT GTACTATCAA 1200
TTGATGAACA AAACAATGAG GTAAATTCCA AATTGAGAAC AGTATATATA TTTGTATTTC 15943
|| || || |||||| |||
CCGACGAGCA AAACAACGAG .......... .......... .......... .......... 1220
AGCAAGCTTA ACTATGATAC GTCACTCTTC AGGTTGTCGT CTGGGATGCA CTTACTGCAG 16003
|||||||| |||||| || |||||| | |
.......... .......... .......... ..GTTGTCGT CTGGGACGCC CTTACTTCTG 1248
AAAAGGTTGC AAGATTGCCC TCTGGCAGCA CTGGTGCTCC CAGATGGCTC GACCACTCCC 16063
||| ||| || ||||||||| |||||| || | || || || || ||||| || |||||||
AAAGGGTGGC AAGATTGCCG TCTGGCCACA CCGGCGCCCC TAGGTGGCTG GAGCACTCCC 1308
CAGTTGAACC AGTTTTTGTT ATTTGTGGAA ATGATAGATC GATCAGATTC TGGAAACAAA 16123
| || || || ||| |||||| | || |||| | ||| |||| |||||||| |||||| |||
CTGTAGAGCC AGTGTTTGTT ACATGCGGAA ACGATCGATC CGTCAGATTC TGGAAATAAA 1368
CCGTATAGCT TGTAGATTCA ACCATTCAAA TCAAAA 16159
| || ||| | | | ||||| ||| | | | |||
CGGTGTAGAT T-CA-ATTCA ACCCTGGCAT TTAAAT 1402
********************************************************************************
EST sequence 124 +strand (File: TAtuc02-12-22.26180+)
1 GATTCGGCAC GAGCGAAGGG GAGGAAGGTC GGGGCCGAGA TGGACGCGGC GGTGCAGGAG
61 GCGAAGCTGC TGCGGCAGGT GAACGCCCTC ATCGTGGCGC ACCTCCGCGA CCAGAACCTC
121 ACGCAGGCCG CCACCGCCGT CGCCGCCGCC ACCATGACCC CCAAGGCCGA CGCCTCCGCC
181 CCCAACCACC TCCTCCGCCT CGTCGCCAAA GGCCTCGCGG CAGAGCAAGA GGAGGAGGCG
241 AGAGGAGGCG GAGATCCCGC CGCGTTTGAC CCCGCCGCGG TCGCTGCGGG CGGCGGGCTG
301 GCGCGCCCGC TCGGCACCAA TGCCGTGGAT TTCAGTGTGC AGAATGTTAG GGGCCCGTCC
361 AAGACTTTCC CCAAGCATGA AACCAGGCAC ATCTCCGATC ATAAGAATGT TGCCAGATGT
421 GCAAAATTTA GTCCTGATGG GAAATATTTT GCAACTGGAA GTGGGGACAC ATCCATTAAG
481 TTCTTTGAGG TGTCGAAAAT TAAGCAGACT ATGTTAGGAG ACTCCAAAGA AAGCTCTGGC
541 CGGCCTGTGG TCCGTACATT TTATGACCAT GTGCAGCCCA TCAATGATCT GGATTTCCAT
601 CCTATTAGCC CAATACTGAT ATCTGGAGC
Predicted gene structure (within gDNA segment 11937 to 14268):
Exon 1 12473 12642 ( 170 n); cDNA 49 212 ( 164 n); score: 0.853
Intron 1 12643 12703 ( 61 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.51)
Exon 2 12704 12823 ( 120 n); cDNA 213 335 ( 123 n); score: 0.575
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.78), Pa: 0.000 (s: 0.76)
Exon 3 12921 12990 ( 70 n); cDNA 336 405 ( 70 n); score: 0.757
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.76), Pa: 0.978 (s: 0.88)
Exon 4 13197 13280 ( 84 n); cDNA 406 489 ( 84 n); score: 0.869
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 0.88), Pa: 1.000 (s: 0.80)
Exon 5 13381 13467 ( 87 n); cDNA 490 576 ( 87 n); score: 0.782
Intron 5 13468 13886 ( 419 n); Pd: 0.992 (s: 0.72), Pa: 0.939 (s: 0.84)
Exon 6 13887 13939 ( 53 n); cDNA 577 629 ( 53 n); score: 0.830
MATCH 21326110+ TAtuc02-12-22.26180+ 0.774 584 0.928 C
PGS_21326110+_TAtuc02-12-22.26180+ (12473 12642,12704 12823,12921 12990,13197 13280,13381 13467,13887 13939)
Alignment (genomic DNA sequence = upper lines):
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCGC TCATCGTGGC GCACCTCCGT 12532
|||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCCC TCATCGTGGC GCACCTCCGC 108
AGCCAGAACC TCGGGCAGGC CGCAGCCGCC GTCGCCGCCG CCACCATGAC CCCCATCTCC 12592
|||||||| || |||||| ||| ||||| |||||||||| |||||||||| ||||| ||
GACCAGAACC TCACGCAGGC CGCCACCGCC GTCGCCGCCG CCACCATGAC CCCCAAGGCC 168
GCCGCCGAAT CCGTCCCCGC AAATCAACTC CTACGTCTCG TGGCCAAGGT CCCCCCACTT 12652
| |||| | ||| |||| | || || ||| || || |||| | ||||| |
GACGCC---T CCG-CCCC-C -AACCACCTC CTCCGCCTCG TCGCCAAAGG .......... 212
TCCCCTTCCT CCGGCAGTCT GGCCTAGGAT TTGTTCTGCA CGGGCCTAAA CCCTCACTGT 12712
|||| | |
.......... .......... .......... .......... .......... .CCTCGCGGC 221
TGGTTCGCAG GGCCTCGCG- GCGGAGGGCG GAGGAGGAGC CGC--TT-CC GCATTCGACT 12768
| || | ||| | ||| |||| ||| || ||| || | | ||
AGAGCAAGAG GAGGAGGCGA GAGGA-GGCG GAGATCCCGC CGCGTTTGAC CCCGCCGCGG 280
CCGCCGGGTT CGGTGGGGCG GTGCAGCCGC TCGGCTCCAG TGCCGTGGAT TTCAGGTAAA 12828
||| | | ||| ||| | | || |||| ||||| ||| |||||||||| |||||
TCGCTGCGGG CGGCGGGCTG GCGCGCCCGC TCGGCACCAA TGCCGTGGAT TTCAG..... 335
CCCCAACCTT GCGCCCCCGC GGTGTTGCCT AGTGGCAGTG TTTTTTCTGG TGCTGAACAT 12888
.......... .......... .......... .......... .......... .......... 335
TGGTGAGGAG TGTTGACGCC GGTGCTGTGT AGTATGCAGG ATGTCAAGGG CTCATCCAAG 12948
| ||||| |||| | ||| | | ||||||
.......... .......... .......... ..TGTGCAGA ATGTTAGGGG CCCGTCCAAG 363
AGCTTCCCCA AGCACGAGGC GAAGCATGTC TCTGACCATA AGGTGCTTAT GATTCCAATT 13008
| ||||||| |||| || | | ||| || || || |||| ||
ACTTTCCCCA AGCATGAAAC CAGGCACATC TCCGATCATA AG........ .......... 405
TTCCCTTGCA AATGCACCAC TTGAAAGTTG AAACAATTTT TGTGTCAGAC TCCTGTTTAT 13068
.......... .......... .......... .......... .......... .......... 405
CTGAATATTT ACTACTGCTA TTGCACATTT TGCACTTATC ACAGTACCAT GATTATGTAG 13128
.......... .......... .......... .......... .......... .......... 405
ACAACTTGGG ATTGACCAAC AATAGATTTT ACTGATGTTT ATTGGCTTAC CATTGCATTT 13188
.......... .......... .......... .......... .......... .......... 405
TTCTGTAGAA CGCTGCCCGG TGTGCGAAAT TTAGTCCTGA TGGGAAGTAT TTTGCAACTG 13248
|| | |||| | ||||| |||| |||||||||| |||||| ||| ||||||||||
........AA TGTTGCCAGA TGTGCAAAAT TTAGTCCTGA TGGGAAATAT TTTGCAACTG 457
GGAGTGCTGA TACATCCATT AAGTTTTTTG AGGTGAACTT GAAATTTGAA TTGCCACTCA 13308
| |||| || ||||||||| ||||| |||| ||
GAAGTGGGGA CACATCCATT AAGTTCTTTG AG........ .......... .......... 489
GGTTGCTAGG TGGGGCTTGT GCTGTTTTCT ACTTAGTTGC AACTTGTAAC TCACTATTGC 13368
.......... .......... .......... .......... .......... .......... 489
TCTGTCCTGC AGGTTGCTAA AATTAAGCAG ACTATGGTAG GGGACTCCAA AGATGGTCCT 13428
|| | || |||||||||| |||||| ||| | |||||||| ||| | ||
.......... ..GTGTCGAA AATTAAGCAG ACTATGTTAG GAGACTCCAA AGAAAGCTCT 537
GCCAGGCCTG TGATTCGCAC ATTTTATGAT CACACACAGG TGAGCATGTA TTGCTCATAT 13488
| | |||||| || | || || ||||||||| || |||
GGCCGGCCTG TGGTCCGTAC ATTTTATGAC CATGTGCAG. .......... .......... 576
ATGACAGTTT ATTTACTCTT CAAGGTCGTG AGACTCTTTT CAACACTTCC ACAAGATTGC 13548
.......... .......... .......... .......... .......... .......... 576
CTCCGAGTTA GGTCTCCTGC AGTATTTTTT TTCCTTTAAT ATGCGGAGAG CTGCATATCA 13608
.......... .......... .......... .......... .......... .......... 576
TTGCATTATA GAAAGACTGA AATACATGGG TAGATCAAAT CCACCTGCCA CCACAGACCA 13668
.......... .......... .......... .......... .......... .......... 576
CACTTATATA CACACGCTCA ACTCACGTTT AGCACACTGG ATGCACACCT AGCAGCTGCA 13728
.......... .......... .......... .......... .......... .......... 576
ATTTGTAGTT AGATATTTGC TTACTGAGCT GTGTGGAGCA TTGACATGAT ATTCAATTTT 13788
.......... .......... .......... .......... .......... .......... 576
TTAATAAACA ACATTTTTTT CCATTTTCAC TAGTTTCTAC TTCATTTCCC ATTGCTCAAA 13848
.......... .......... .......... .......... .......... .......... 576
TTTCCACTGT GCTCGTAAAC ATGATTGATT TCTTGCAGGC CATCAATGAT CTGGATTTTC 13908
| |||||||||| |||||||| |
.......... .......... .......... ........CC CATCAATGAT CTGGATTTCC 598
ATCCTGAGAG TCCAATACTG ATATCAGCTG C 13939
||||| || ||||||||| ||||| | | |
ATCCTATTAG CCCAATACTG ATATCTGGAG C 629
********************************************************************************
EST sequence 155 +strand (File: 9661046+)
1 CCCGTTTCAT TAGCTCCCTT CCACTCCGTC AGAGATGGAC GCGGCGGTGC AGGAGGCGAA
61 GCTGCTGCGG CAGGTGAACG CCCTCATCGT GGCGCACCTC CGCGACCAGA ACCTCACGCA
121 GGCCGCCACC GCCGTCGCCG CCGCCACCAT GACCCCCAAG GCCGACGCCT CCGTCCCCAA
181 CCACCTCCTC CGCCTCGTCG CCAAGGGCCT CGCCGCCGAG CGGGAGGAGG CGGCCAGGGG
241 AGGCGGAGCT CCCGCCGCGT TTGACTCCGC TGCTGGCGGC GGTGGGCCGG CGCGCCCGCT
301 CGGCACCAAT GCCGTGGATT TCAGTGTGCA GAATGTTAGG GGCCCGTCCA AGACTTTCCC
361 CAAGCATGAA ACCAGGCACA TCTCCGATCA TAAGAATGTT GCCAGATGTG CAAAATTTAG
421 TCCTGATGGG AAATATTTTG CAACTGGAAG TGGGGACACA TCCATTAAGT TCTTTGAGGT
481 ATCGAAAATT A
Predicted gene structure (within gDNA segment 11962 to 13678):
Exon 1 12473 12650 ( 178 n); cDNA 44 216 ( 173 n); score: 0.843
Intron 1 12651 12717 ( 67 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.64)
Exon 2 12718 12823 ( 106 n); cDNA 217 324 ( 108 n); score: 0.689
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.82), Pa: 0.000 (s: 0.76)
Exon 3 12921 12990 ( 70 n); cDNA 325 394 ( 70 n); score: 0.757
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.76), Pa: 0.978 (s: 0.88)
Exon 4 13197 13295 ( 99 n); cDNA 395 491 ( 97 n); score: 0.828
MATCH 21326110+ 9661046+ 0.790 453 0.923 C
PGS_21326110+_9661046+ (12473 12650,12718 12823,12921 12990,13197 13295)
Alignment (genomic DNA sequence = upper lines):
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCGC TCATCGTGGC GCACCTCCGT 12532
|||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCCC TCATCGTGGC GCACCTCCGC 103
AGCCAGAACC TCGGGCAGGC CGCAGCCGCC GTCGCCGCCG CCACCATGAC CCCCATCTCC 12592
|||||||| || |||||| ||| ||||| |||||||||| |||||||||| ||||| ||
GACCAGAACC TCACGCAGGC CGCCACCGCC GTCGCCGCCG CCACCATGAC CCCCAAGGCC 163
GCCGCCGAAT CCGTCCCCGC AAATCAACTC CTACGTCTCG TGGCCAAGGT CC-CCCCACT 12651
| |||| | |||| ||| | || || ||| || || |||| | ||||||| || | || |
GACGCC---T CCGT-CCC-C -AACCACCTC CTCCGCCTCG TCGCCAAGGG CCTCGCCGC. 216
TTCCCCTTCC TCCGGCAGTC TGGCCTAGGA TTTGTTCTGC ACGGGCCTAA ACCCTCACTG 12711
.......... .......... .......... .......... .......... .......... 216
TTGGTTCGCA GGGCCTCGCG GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG 12771
|| | | | | | |||| | | |||| ||||| | |||| || |||||||
......CG-A GCGGGAGGAG GCGGCCAGGG GAGGCGGAGC TCCCGCCGCG TTTGACTCCG 269
C--C-GGGTT CGGTGGGGCG GTGCAGCCGC TCGGCTCCAG TGCCGTGGAT TTCAGGTAAA 12828
| | || ||||||| || | || |||| ||||| ||| |||||||||| |||||
CTGCTGGCGG CGGTGGGCCG GCGCGCCCGC TCGGCACCAA TGCCGTGGAT TTCAG..... 324
CCCCAACCTT GCGCCCCCGC GGTGTTGCCT AGTGGCAGTG TTTTTTCTGG TGCTGAACAT 12888
.......... .......... .......... .......... .......... .......... 324
TGGTGAGGAG TGTTGACGCC GGTGCTGTGT AGTATGCAGG ATGTCAAGGG CTCATCCAAG 12948
| ||||| |||| | ||| | | ||||||
.......... .......... .......... ..TGTGCAGA ATGTTAGGGG CCCGTCCAAG 352
AGCTTCCCCA AGCACGAGGC GAAGCATGTC TCTGACCATA AGGTGCTTAT GATTCCAATT 13008
| ||||||| |||| || | | ||| || || || |||| ||
ACTTTCCCCA AGCATGAAAC CAGGCACATC TCCGATCATA AG........ .......... 394
TTCCCTTGCA AATGCACCAC TTGAAAGTTG AAACAATTTT TGTGTCAGAC TCCTGTTTAT 13068
.......... .......... .......... .......... .......... .......... 394
CTGAATATTT ACTACTGCTA TTGCACATTT TGCACTTATC ACAGTACCAT GATTATGTAG 13128
.......... .......... .......... .......... .......... .......... 394
ACAACTTGGG ATTGACCAAC AATAGATTTT ACTGATGTTT ATTGGCTTAC CATTGCATTT 13188
.......... .......... .......... .......... .......... .......... 394
TTCTGTAGAA CGCTGCCCGG TGTGCGAAAT TTAGTCCTGA TGGGAAGTAT TTTGCAACTG 13248
|| | |||| | ||||| |||| |||||||||| |||||| ||| ||||||||||
........AA TGTTGCCAGA TGTGCAAAAT TTAGTCCTGA TGGGAAATAT TTTGCAACTG 446
GGAGTGCTGA TACATCCATT AAGTTTTTTG AGGTGAACTT GAAATTT 13295
| |||| || ||||||||| ||||| |||| |||| | | |||||
GAAGTGGGGA CACATCCATT AAGTTCTTTG AGGT-ATC-G AAAATTA 491
********************************************************************************
EST sequence 23 +strand (File: SBtuc02-10-21.11198+)
1 GCACGAGGCA AGAGTGTACA AGGAAGAAGA AGCACCAGCA GCTTTTCTTG ATGCTACCTT
61 GATCCATCAG CAGCAGCTTC TTCGTCTGCT TTTTGGGGAG ATTATTAGGA GTAGGAGTAG
121 GATTACTAGT TATTTGATTA TTACTAGTAG CTAGGGAGTG ATCGAGCGAG GATGTTGGCG
181 GTGTTCAGCG GCGGTGTGGT GGAGGTGCCG GCGGAGCTGG TGGCGGCGGG AAGCCGGACG
241 CCGTCGCCCA AGACCAGGGC GTCCGAGCTC GTCGGCCGGT TCCTGGGTGC CTCCGAGCCG
301 GCCGTCTCCG TGCAGCTCGG CGACCTCGGC CACCTCGCTT ACTCCCACAC CAACCAGGCA
361 CTCCTCCGCC CAAGGTCGTT CGCGGCGAAA GACGAGGTGT TCTGCCTGTT CGAGGGTGTG
421 CTGGACAACC TGGGGCGGCT GAGCCAGCAG CACGGGCTGT CCACCAAGGG CGCCAACGAG
481 GTGCTCCTCG TCATCGAGGC CTACAAGACG CTCCGTGACC GGGCGCCCTA CCCGGCCAGC
541 TTCATGCTCG CACAGCTCAC CGGCAGCTAC GCCTTCGTGC TCTTCGACAA GTCCACCAAC
601 TCCCTCCTCG TCGCATCTGA TCCTGAGGGC AAGGTGCCGC TCTTCTGGGG GATCACTGCT
661 GATGGCTGCG TCGCCTTCTC TGATGACATT GACATGCTCA AAGGATCATG TGGCAAATCG
721 CTCGCGCCTT TCCCACAAGG TTGCTTCTAC TCTAACGCCC TTGGAGGCCT GAAGTGCTAT
781 GAGAACCCCA AGCACAAGGT CACTGCTGTT CCTGCAGACG AGGAAGAAAT CTGTGGTGCA
841 ACTTTCAAGG TGGAAGGGTC TACAGTCCTG ACAGCGCTGC ATTTTTAGGA GATTTCCGTG
901 TGGAAGCGTG GGTGGAGCGC AATGCAATGC AGAACTGTTG TACATGCATG GTGGATTGGT
961 GGTGTAACAT AGTGGCAAGT CATGTTCATG CAACTGAGTC TATCTGTGTA ATGCATCTTT
1021 CATAAAAAGA GAAGTACTGG AGGCACTTAA GGGTTGATGG TTGTGTGTGT ACCCTGTATC
1081 CCTAGGTGTT CAACTTACAT GGAACTTGGG TGGTTGAGAC ATGGTGCTAA TATAATCGAT
1141 CGGTTGCGTG GAATATGTGA AGTTTGTAAT CTGTTCCTAA TAACAAAGCT TTGTTTCTCC
1201 AAAAAAAAAA AAAAAAAAAA AAAAACTCGA GACTAGTTCT CTCCCTCGTG CCGAATTCGG
1261 CACGAGGAAT CTTTTGAGTC TGTAATTCTA GTTCTCTAAA CTTGTTAAGC AATGCATCAT
1321 GTATTACTTT TGCTTTTATT TGGTAATTAT TGTCTAATTA TAGACTAACT AGGCTCAAAA
1381 GATTTATCTC GGATTTACAG GTAAACTGTG CAATTAATTT TTATTTTCCT CTATATTTGA
1441 TATTTCATGT CGTAAAATTC GATGTGACGG AGAATTTTAA AAAGACTAAA CAAGGCAGGC
1501 CTAAACTTGT AAAATGATGC ACCGTTGGCC CATTATATTT CTCTGCAGTG CACCACTTAT
1561 CGAGCATCAC ACA
Predicted gene structure (within gDNA segment 10082 to 18101):
Exon 1 10201 10207 ( 7 n); cDNA 1047 1053 ( 7 n); score: 0.714
Intron 1 10208 10515 ( 308 n); Pd: 0.753 (s: 0), Pa: 1.000 (s: 0)
Exon 2 10516 10522 ( 7 n); cDNA 1054 1060 ( 7 n); score: 0.714
Intron 2 10523 10710 ( 188 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0)
Exon 3 10711 10740 ( 30 n); cDNA 1061 1088 ( 28 n); score: 0.633
Intron 3 10741 10917 ( 177 n); Pd: 0.839 (s: 0), Pa: 0.819 (s: 0.62)
Exon 4 10918 10971 ( 54 n); cDNA 1089 1138 ( 50 n); score: 0.611
Intron 4 10972 11329 ( 358 n); Pd: 0.000 (s: 0.62), Pa: 0.992 (s: 0)
Exon 5 11330 11355 ( 26 n); cDNA 1139 1164 ( 26 n); score: 0.615
Intron 5 11356 13309 (1954 n); Pd: 0.741 (s: 0), Pa: 0.727 (s: 0)
Exon 6 13310 13317 ( 8 n); cDNA 1165 1172 ( 8 n); score: 0.250
Intron 6 13318 13380 ( 63 n); Pd: 0.789 (s: 0), Pa: 1.000 (s: 0)
Exon 7 13381 13407 ( 27 n); cDNA 1173 1196 ( 24 n); score: 0.630
Intron 7 13408 13935 ( 528 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0)
Exon 8 13936 13957 ( 22 n); cDNA 1197 1217 ( 21 n); score: 0.727
Intron 8 13958 14744 ( 787 n); Pd: 0.973 (s: 0), Pa: 0.738 (s: 0)
Exon 9 14745 14779 ( 35 n); cDNA 1218 1253 ( 36 n); score: 0.543
Intron 9 14780 16617 (1838 n); Pd: 0.995 (s: 0), Pa: 0.000 (s: 0.65)
Exon 10 16618 16657 ( 40 n); cDNA 1254 1292 ( 39 n); score: 0.650
Intron 10 16658 16886 ( 229 n); Pd: 0.000 (s: 0.65), Pa: 0.000 (s: 0.62)
Exon 11 16887 17084 ( 198 n); cDNA 1293 1483 ( 191 n); score: 0.758
MATCH 21326110+ SBtuc02-10-21.11198+ 0.726 454 0.289 C
PGS_21326110+_SBtuc02-10-21.11198+ (10201 10207,10516 10522,10711 10740,10918 10971,11330 11355,13310 13317,13381 13407,13936 13957,14745 14779,16618 16657,16887 17084)
Alignment (genomic DNA sequence = upper lines):
TTATGAGGTC AGAAAAAAAG AAACTTCCAT TGGGAAAACT TGATATCTAT TACTTCATTA 10260
||| | |
TTAAGGG... .......... .......... .......... .......... .......... 1053
TTTATAGTGA GTAACAAAAG TTAGCACTTT CAAACTGACT AAAGTATGCC AGGGACGTAT 10320
.......... .......... .......... .......... .......... .......... 1053
CATGCATTTT ACAACATGCT CCACATATCT CCAAATATCA CATATTACGC TTGTAGTGGT 10380
.......... .......... .......... .......... .......... .......... 1053
AAACTGATAA TACATCTACC AACACTGAAA GTTCTCACAA GTCAGAACCC TATATTTGAC 10440
.......... .......... .......... .......... .......... .......... 1053
AGTTGTGGTC TCCCTCCTTC CCTCTGCATT TGTTGCTACA GATGATTACA CTGAGTTTTG 10500
.......... .......... .......... .......... .......... .......... 1053
TTTCTTGTCA TTTAGGTTAT GGATAATGAA AATAAGCCAA AAGCCAGGGA AGTTGTCAAA 10560
| || ||
.......... .....TTGAT GG........ .......... .......... .......... 1060
AGATTGATTG CTGAAGATGG ATGGAAAGGT TTGTACAGAG GGTTGGGTCC AAGATTTTTC 10620
.......... .......... .......... .......... .......... .......... 1060
AGCTCATCAG CTTGGGGAAC CTCAATGATA GTATGCTACG AGTACCTGAG TATGTTTCGT 10680
.......... .......... .......... .......... .......... .......... 1060
CTTCCCTTGT CAAATGTACA CATGCATATG TAGTGTTATA TATCACTGCA TCCCATGCAG 10740
| ||| | | || | ||| | |||| | |
.......... .......... .......... TTGTG-TGTG TA-CCCTGTA TCCCTAGGTG 1088
GTTAATTTTA AGTACCCAGA TACTTCTTCT CATTTAGAAT TTAGTTAAAA TGACATCATT 10800
.......... .......... .......... .......... .......... .......... 1088
CAGGTCAGTT GGCATCTCCA GTACACTGCT TTTGTAAGTT GTATCATAAA TCCCATTTGC 10860
.......... .......... .......... .......... .......... .......... 1088
AATGAAATTT TTGACTCAAG TTGCAGCCTG TAACTTTTCT ATATTTTTCG AATAAAGCTA 10920
|
.......... .......... .......... .......... .......... .......-T- 1089
TCACCGTACA TGAAACCTGC TTCTGTTAAT GCCAAGGAGC GCACATTATT TCCTGTAGAC 10980
||| | |||| || ||| || | ||| | | || || || | || ||
TCAACTTACA TGGAACTTGG GT-GGTTGA- GACATGGTGC TAATATAATC G......... 1138
CGGCTTGGAT GTTGAACAAT TGGCACATGC AAGTAGCAAA GAGCAGCCTT GTGCTTGCAA 11040
.......... .......... .......... .......... .......... .......... 1138
CAATCTGGTC CACCTGTGGA TATGTTCGCT GTGAAAGAAA CCAATTAGTC CTTGTATGAA 11100
.......... .......... .......... .......... .......... .......... 1138
ACATGGTATT AGCGCTTCAT GAATAAAACC ACTGATTCTG ATTTCTTATT TTCAATGAAT 11160
.......... .......... .......... .......... .......... .......... 1138
GGATGGGCAT TACCAAAGTT ATCATGATTA AAGATCTATT TCATATAAGT TTATTTTTAT 11220
.......... .......... .......... .......... .......... .......... 1138
ACATTAGAGT TTATTTAGAG AACAAGGTAT ATTTAGTTTT GGTAATTTTG TGAACTGCAC 11280
.......... .......... .......... .......... .......... .......... 1138
TCAGACGACT TTGGTATTCT TACTGTAATT TTGTTTTGTT TTCCTACAGA GCGCTTGTGT 11340
| || ||| ||
.......... .......... .......... .......... .........A TCGGTTGCGT 1149
GCTAAAGTTG AAGAGGTCTG ATTTCTGAGC TGCCTTAAAC TCAGAACGCA ATTCCTACAA 11400
| | | || |||
GGAATATGTG AAGTT..... .......... .......... .......... .......... 1164
TTCTGGAAGT TTTGTATTAG CAGAAGTGTA ATAATGCTGT ACACCAACGG AAGCTTCAGT 11460
.......... .......... .......... .......... .......... .......... 1164
TCTTGCTGAC ATAGGTGAAA GTATTAAACA TGGATGTTTG ATGGTGTTAA AGACGTCATT 11520
.......... .......... .......... .......... .......... .......... 1164
TGATGCTAGA CAATAGTCCT TACAAACTTT GGTTCTCTGA GCAGAGTATT CTCAAAAAAA 11580
.......... .......... .......... .......... .......... .......... 1164
TGCAGGGGCC TATATTTTTT TTTGCCTCTT ATGCTGAATA TGGATTAGGC TGATCATTTT 11640
.......... .......... .......... .......... .......... .......... 1164
AGATGAATAT AAACGAGATC AGATGTACAC ATTTATCATT CTTTTATACG TGAAGGCTTG 11700
.......... .......... .......... .......... .......... .......... 1164
TTTTAGCGAG GCTGGATGAT TGAGACCAGT TGTAATGACA TGGTACAATG TTTCCAGGAG 11760
.......... .......... .......... .......... .......... .......... 1164
ATGCTGTTTT GACTCTTCTT TTCATGCGGT TTCAATTATC TTTTTGCCCT TGTTGGAATG 11820
.......... .......... .......... .......... .......... .......... 1164
CAAAAATGTC GAACACGTTG CTGCCCACTG AGAAGCAAAT CATAGTATGT ATGATGCTTA 11880
.......... .......... .......... .......... .......... .......... 1164
AGCAAACTGG GAAACGCTTT CTGAGAGACG ATAACCCATT CGTTTGACCC TTTATTATGT 11940
.......... .......... .......... .......... .......... .......... 1164
TCATTGCTAT CTTGCTGGTA TGATGCCGTT TGGGTGTCCT GGACATTATG CATTTATGCG 12000
.......... .......... .......... .......... .......... .......... 1164
TTTAGTTTGG TGGTCAAACT ACAGTCAAAT GTCGTGATAC CTATTCCAGA TTCTGGGCGT 12060
.......... .......... .......... .......... .......... .......... 1164
GATACCATTT TCAGCTCTGC AGCGTTCATG GTGATCAAAA TCGCTGATTT TGGGAAATGG 12120
.......... .......... .......... .......... .......... .......... 1164
GTTGCGATGG AGGCACAAAC GTATTTTCTT CTTCAAATCA AAATAAGATC ACTTCTCCTA 12180
.......... .......... .......... .......... .......... .......... 1164
AACTTTAGGA TAAATGTTGT AGCGCTTTAT AAGTTTCACA TGAGGAATAT AAATTTTGTA 12240
.......... .......... .......... .......... .......... .......... 1164
ATTTCTTCCA AGACATCCAT TTTAAGTGGT TCTTTTATTG GGATTTCCCA CTATAAATAT 12300
.......... .......... .......... .......... .......... .......... 1164
TGTCATTCCC TGAGACGTTG CCCGGGGTCC ACTCCAAGAA AGGACAGGAG CTTGCTAGTC 12360
.......... .......... .......... .......... .......... .......... 1164
TTCTTCAGCT TCAGTCCAGT CACAACTGAA TCCGCCGCGC AAGGCATCCA AGGATTTGTT 12420
.......... .......... .......... .......... .......... .......... 1164
CGTCCTTCGG AGGGTGGGGA ATCGAAGCGA CGAAAACGAA GCAATGAACG AGGCGGTGCA 12480
.......... .......... .......... .......... .......... .......... 1164
GGAGGCGAAG CTGCTGCGGC AGGTGAACGC GCTCATCGTG GCGCACCTCC GTAGCCAGAA 12540
.......... .......... .......... .......... .......... .......... 1164
CCTCGGGCAG GCCGCAGCCG CCGTCGCCGC CGCCACCATG ACCCCCATCT CCGCCGCCGA 12600
.......... .......... .......... .......... .......... .......... 1164
ATCCGTCCCC GCAAATCAAC TCCTACGTCT CGTGGCCAAG GTCCCCCCAC TTTCCCCTTC 12660
.......... .......... .......... .......... .......... .......... 1164
CTCCGGCAGT CTGGCCTAGG ATTTGTTCTG CACGGGCCTA AACCCTCACT GTTGGTTCGC 12720
.......... .......... .......... .......... .......... .......... 1164
AGGGCCTCGC GGCGGAGGGC GGAGGAGGAG CCGCTTCCGC ATTCGACTCC GCCGGGTTCG 12780
.......... .......... .......... .......... .......... .......... 1164
GTGGGGCGGT GCAGCCGCTC GGCTCCAGTG CCGTGGATTT CAGGTAAACC CCAACCTTGC 12840
.......... .......... .......... .......... .......... .......... 1164
GCCCCCGCGG TGTTGCCTAG TGGCAGTGTT TTTTCTGGTG CTGAACATTG GTGAGGAGTG 12900
.......... .......... .......... .......... .......... .......... 1164
TTGACGCCGG TGCTGTGTAG TATGCAGGAT GTCAAGGGCT CATCCAAGAG CTTCCCCAAG 12960
.......... .......... .......... .......... .......... .......... 1164
CACGAGGCGA AGCATGTCTC TGACCATAAG GTGCTTATGA TTCCAATTTT CCCTTGCAAA 13020
.......... .......... .......... .......... .......... .......... 1164
TGCACCACTT GAAAGTTGAA ACAATTTTTG TGTCAGACTC CTGTTTATCT GAATATTTAC 13080
.......... .......... .......... .......... .......... .......... 1164
TACTGCTATT GCACATTTTG CACTTATCAC AGTACCATGA TTATGTAGAC AACTTGGGAT 13140
.......... .......... .......... .......... .......... .......... 1164
TGACCAACAA TAGATTTTAC TGATGTTTAT TGGCTTACCA TTGCATTTTT CTGTAGAACG 13200
.......... .......... .......... .......... .......... .......... 1164
CTGCCCGGTG TGCGAAATTT AGTCCTGATG GGAAGTATTT TGCAACTGGG AGTGCTGATA 13260
.......... .......... .......... .......... .......... .......... 1164
CATCCATTAA GTTTTTTGAG GTGAACTTGA AATTTGAATT GCCACTCAGG TTGCTAGGTG 13320
| |
.......... .......... .......... .......... .........T GTAATCT... 1172
GGGCTTGTGC TGTTTTCTAC TTAGTTGCAA CTTGTAACTC ACTATTGCTC TGTCCTGCAG 13380
.......... .......... .......... .......... .......... .......... 1172
GTTGCTAAAA TTAAGCAGAC TATGGTAGGG GACTCCAAAG ATGGTCCTGC CAGGCCTGTG 13440
||| |||| | || || | | || |
GTTCCTAATA ACAA--AG-C TTTGTTT... .......... .......... .......... 1196
ATTCGCACAT TTTATGATCA CACACAGGTG AGCATGTATT GCTCATATAT GACAGTTTAT 13500
.......... .......... .......... .......... .......... .......... 1196
TTACTCTTCA AGGTCGTGAG ACTCTTTTCA ACACTTCCAC AAGATTGCCT CCGAGTTAGG 13560
.......... .......... .......... .......... .......... .......... 1196
TCTCCTGCAG TATTTTTTTT CCTTTAATAT GCGGAGAGCT GCATATCATT GCATTATAGA 13620
.......... .......... .......... .......... .......... .......... 1196
AAGACTGAAA TACATGGGTA GATCAAATCC ACCTGCCACC ACAGACCACA CTTATATACA 13680
.......... .......... .......... .......... .......... .......... 1196
CACGCTCAAC TCACGTTTAG CACACTGGAT GCACACCTAG CAGCTGCAAT TTGTAGTTAG 13740
.......... .......... .......... .......... .......... .......... 1196
ATATTTGCTT ACTGAGCTGT GTGGAGCATT GACATGATAT TCAATTTTTT AATAAACAAC 13800
.......... .......... .......... .......... .......... .......... 1196
ATTTTTTTCC ATTTTCACTA GTTTCTACTT CATTTCCCAT TGCTCAAATT TCCACTGTGC 13860
.......... .......... .......... .......... .......... .......... 1196
TCGTAAACAT GATTGATTTC TTGCAGGCCA TCAATGATCT GGATTTTCAT CCTGAGAGTC 13920
.......... .......... .......... .......... .......... .......... 1196
CAATACTGAT ATCAGCTGCA AAAGACAATA CAATAAAGTA TGCTTATCCT TGATGTCTAC 13980
|| || ||| | || | || |||
.......... .....CTCCA AAA-AAAAAA AAAAAAA... .......... .......... 1217
ACTCCGTGCT GTTAAATTGT CTATTTGAAG TGCTCATACT AGGATTAAGC ATGATTTTTT 14040
.......... .......... .......... .......... .......... .......... 1217
AGGAATTTTT TGCGGTATTA ATTGCTATCT GTGTTATTGT TTTGTACATG AAAAAATTTT 14100
.......... .......... .......... .......... .......... .......... 1217
GCTCAACAGA TTTTTTGACT TCTCAAAGAC CAATGCGAGG AAAGCGTTCA GAGTTATTCA 14160
.......... .......... .......... .......... .......... .......... 1217
GGTTGTAAAT TCTAGCAATC CAATCTCTCT ATATATCATG TAAAATGGTG TGTTCATTGC 14220
.......... .......... .......... .......... .......... .......... 1217
ATTTAACCAG GCTCATTTGT TAATGCTTGG CAGGATACTC ATAATGTTAG ATCTGTATGT 14280
.......... .......... .......... .......... .......... .......... 1217
TTTCATCCTT GTGGGGATTA CCTTTTAGCA GGTACTATGA TCTTTTCACT AAATTTAAAT 14340
.......... .......... .......... .......... .......... .......... 1217
TTGATTTCTA GTTCTGCTGT GATTAACTGA TTCTTGATGT CTGATATCAG TTTGATATGC 14400
.......... .......... .......... .......... .......... .......... 1217
TCTGATTTTT ATGCATTATA AGTTGTTAAC ATGTTTTCAG TTGTTATCTG TAAAGTAATT 14460
.......... .......... .......... .......... .......... .......... 1217
TAATCATTTC ACCAAAACAA TTTGATATTT GGGCTTAAGA ATTTGGATTT CGTTCCTGGA 14520
.......... .......... .......... .......... .......... .......... 1217
TCAACAGTTT CTGTCTCGTG GGCATTTGAA AAATACTGCA AGCATATCGT ATGGAATTTT 14580
.......... .......... .......... .......... .......... .......... 1217
CTTCTTACAT ATAGTCAAAT ATTAACATTC AAATATGTAT TTTTTTTAAA AAAACTCATT 14640
.......... .......... .......... .......... .......... .......... 1217
TTCATATATT TGGAAGCAAG TGACACTGAT AAAATTATTT GCAGGGACTG ATCACCCAGT 14700
.......... .......... .......... .......... .......... .......... 1217
TGCTCATTTA TATGATATAA ATACTTTTAC ATGCTACTTA TCAGCAAATG CACAGGATTC 14760
||| || || |
.......... .......... .......... .......... ....AAAAAA AACTCGAGAC 1233
TAGTTCTC-C CATTAACCAG GTAGCTTTTC TCTTTCCTTC TGATTCACAA GCATTAGATT 14819
|||||||| | | | | |
TAGTTCTCTC CCTCGTGCCG .......... .......... .......... .......... 1253
GCATTGGTTA TATTCTCATC AAAGTTCTCC GCCAGCCATG CTTACTGATG TTGCTGCCAG 14879
.......... .......... .......... .......... .......... .......... 1253
GTACGCTACT CCTGTACTGG GAGCTTGTAT GTGACTGCTT CTAAAGATGG TTCTCTGCGC 14939
.......... .......... .......... .......... .......... .......... 1253
ATTTGGGATG GAGTATCTGC TGAATGTGTT CGACCTATTA TTGGAGCACA TGGATCTGCA 14999
.......... .......... .......... .......... .......... .......... 1253
GAAGCTACTA GCGCAATTTT CACCAGAGAT GAGAGGTAAG CGAGCTACCA GCATGTCTAA 15059
.......... .......... .......... .......... .......... .......... 1253
GGTGCTCTTC CCTCAAGATA AAATCCAGTC ATTGTTTGGT TTGAAGAACA GAGAGAAAGG 15119
.......... .......... .......... .......... .......... .......... 1253
CATATGCTGT ATGATTCAAG ACAGTAACTA CTTCAAACCC TGTTTGGAAT GTGGGAATCT 15179
.......... .......... .......... .......... .......... .......... 1253
TGTAGTGATT CTGAATGATT TATAACATGT CCTGGATAAT TTCCTGTGTT TCAGACGTGT 15239
.......... .......... .......... .......... .......... .......... 1253
CGTAACTTTA TAACACGAAT AACTCTTTCT CCTTTACCCT ACTATTTCAC CACTAAACAA 15299
.......... .......... .......... .......... .......... .......... 1253
CTAACTTGCC TATAAACACT TTTTAGACTT CTTCTGAAAG GCCTAGTGTT TATGTGGTTA 15359
.......... .......... .......... .......... .......... .......... 1253
TATGCAGCGT GAATGCACTT GCATATAAGA TTGATCTAAA AAATTGATGT AGTGAACTTT 15419
.......... .......... .......... .......... .......... .......... 1253
GACTACCCGA AGTATATGCT TAGATAGTTC ATGGATTTCT TTCATAAAAC TGCACACTGT 15479
.......... .......... .......... .......... .......... .......... 1253
ATTCTGGTTA TCTGTTATGA AGTTTACTAC GTTCTTTCAG GTATGTCCTA TCTTGTGGGA 15539
.......... .......... .......... .......... .......... .......... 1253
AAGATTCTTG TGTCAAGTTA TGGGAAGTTG GCACTGGACG ACTTGTGAAG CAATATGCAG 15599
.......... .......... .......... .......... .......... .......... 1253
GAGCCATTCG CAGACAATTT CGTTGTCAGG TTAGTTTCTC TGTGTTTCTA TAAGATTATT 15659
.......... .......... .......... .......... .......... .......... 1253
ATTTTTTCCT GATTTAAATT TACTCGTGTG CCATATATAT TATTTTTACC CAAAATTTTA 15719
.......... .......... .......... .......... .......... .......... 1253
GGAAACAAAA TATTGCAATT CTTTAATTTG AAAATAGGCT GGTTTGAGCT TGCAGCTTAG 15779
.......... .......... .......... .......... .......... .......... 1253
GATAACAACA TACCTAACCT TGCTATGATA GACAATAAAT ATGATAATAA CTGTTCTTAC 15839
.......... .......... .......... .......... .......... .......... 1253
TATCCAGGCT GTCTTCAATG AAACCGAAGA ATTTGTTCTA TCAGTTGATG AACAAAACAA 15899
.......... .......... .......... .......... .......... .......... 1253
TGAGGTAAAT TCCAAATTGA GAACAGTATA TATATTTGTA TTTCAGCAAG CTTAACTATG 15959
.......... .......... .......... .......... .......... .......... 1253
ATACGTCACT CTTCAGGTTG TCGTCTGGGA TGCACTTACT GCAGAAAAGG TTGCAAGATT 16019
.......... .......... .......... .......... .......... .......... 1253
GCCCTCTGGC AGCACTGGTG CTCCCAGATG GCTCGACCAC TCCCCAGTTG AACCAGTTTT 16079
.......... .......... .......... .......... .......... .......... 1253
TGTTATTTGT GGAAATGATA GATCGATCAG ATTCTGGAAA CAAACCGTAT AGCTTGTAGA 16139
.......... .......... .......... .......... .......... .......... 1253
TTCAACCATT CAAATCAAAA GTATGCTTTC AGTATTACGT TTCAGGAGGA ATGTGCTCAT 16199
.......... .......... .......... .......... .......... .......... 1253
GTAACTTTAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTATTG GAAACTGCAT 16259
.......... .......... .......... .......... .......... .......... 1253
AAGCAATTGA TTGATCTAAT AGCAAACCCC AATGATATGT TTTTTTTTTG GCTCTGCATA 16319
.......... .......... .......... .......... .......... .......... 1253
GCTGATGACA GTTGTATGAA CCCTTGACCT GATTCTTATT GGTCAGGCCC TTTTCGATGA 16379
.......... .......... .......... .......... .......... .......... 1253
TTTGCTATTT TATCCCAATT GTGGATTGCG GAATATATTT CTTCTTCGAA TGTAATGATG 16439
.......... .......... .......... .......... .......... .......... 1253
GTCTCGCCCT ACCACATGTG TGATAGCCTA TAAAAGTTCT ACAACACATT ATTGCATTTC 16499
.......... .......... .......... .......... .......... .......... 1253
ACTTAGGGCA TGTTTAGATT GAAGATGAAA ATTTTTTAGG TCACATCGGA TATGTCGGAA 16559
.......... .......... .......... .......... .......... .......... 1253
GGATGTCGGG AGGGGTTTTT AAAAACTAAT AAAAAAAACA AATTACATAA CTCGTCAGGA 16619
|
.......... .......... .......... .......... .......... ........AA 1255
AACTGCAAGA CGAATCTATT AAGTATAATT AATCTATTAT TAGCACATGT GGGTTACTGT 16679
| ||| || |||||| || ||| | | | |||| |
TTCGGCACGA GGAATCTTTT GAGTCT-GTA ATTCTAGT.. .......... .......... 1292
AGCACTTAAG GCTAATCATG GACTAACTAG GCTTAAAAAA TTCATCTCGC GATTTTCAAC 16739
.......... .......... .......... .......... .......... .......... 1292
CAAACTGTGT AATTATTTTT TATCTACATT TAATGTTTTA TGTATGTGTC TAAAGATTCA 16799
.......... .......... .......... .......... .......... .......... 1292
ATGTGATGGA TGAAAATTTT TTAGGTGGGA ACTAAACAGG GCCTTATATT TTTTAAAAAA 16859
.......... .......... .......... .......... .......... .......... 1292
GATGTGCAAG TGTCAGGCCT TGTTTAGTTT CGAAAACTTT TTGGTTTTTG AGACTGTAGC 16919
| | | ||| | | | | | | ||||
.......... .......... .......TCT CTAAACTTGT TAAGCAATGC ATCATGTATT 1325
ACTTTCGTTT TTATTTGACA AATATTGTCT AATCATAGAG TAACTAGGTT TAAAAGATTT 16979
||||| | || ||||||| | | |||||||| ||| ||||| |||||||| | |||||||||
ACTTTTGCTT TTATTTGGTA ATTATTGTCT AATTATAGAC TAACTAGGCT CAAAAGATTT 1385
ATCTCGCGAT TTATAGGTAA ACTGTGCAAT TAGTTTTTAT TTTTGTATAT ATTTAATGCT 17039
|||||| ||| ||| |||||| |||||||||| || ||||||| ||| | ||| |||| || |
ATCTCG-GAT TTACAGGTAA ACTGTGCAAT TAATTTTTAT TTTCCTCTAT ATTTGAT-AT 1443
TCATGCATGT GTCGTAATAT TTGATGTGTT GAGAAATTTT GAAAA 17084
| | || | ||||||| || | |||||| | |||||| ||||
T--T-CA--T GTCGTAAAAT TCGATGTGAC GGAGAATTTT AAAAA 1483
********************************************************************************
EST sequence 67 +strand (File: 14571087+)
1 GCATGGGAGA ATATTCAAAA AGCAAAAGCT GAGGCAGCAA TTCAGAAGTT AGTGGTATGT
61 TCTTTGCTCT AATTCGAACT ATATTGCACT ATTTTTAACT GAATTGATGC TAGGATTGTT
121 TGCAGGACAT TTTGTTTATA TCTAATGCAT CTAGTTGATC CTGAATTGTA CCCACACTTC
181 TATGATATCA GATTAAGCTC GAGAAGAAAA GATCATCTTC CCTGGATAAG ATTTTGAACA
241 CCCTCAAGTC TGCTCAAAGA AAAGCCCAGG TGATGCGTGA GCGTGAGCGT GATGCAGTAA
301 CAGCAAACCA AGATGGAAAA GGCTCTAGGA AGGCAAAAAA GAGAGTGCAG CTTAGCAAGA
361 ATGGTCAAAT CAGTTCACTG AGTGGCTGCT TCACTTGCCA TGCTTTCTGA TACATGTAAT
421 TCCAAAATTG AGTAAGTTGC CATCAGACTG TTAGGGCCTG TTTAGTTCGC ACCCTGAAAA
481 GTTTTTTTTT TGGGGGGGTA CTGTAGCACA TGTGTAACTA TATTAATTAG TGTCTAATCA
541 TGGACCAACT AGACTCAAAA GGTTTGTCTC GCAAAATACA TGTAAACTGT GCAATTGGTT
601 ATTTTTTTAT CTATATTTAA TGCTC
Predicted gene structure (within gDNA segment 13726 to 17349):
Exon 1 14844 14868 ( 25 n); cDNA 387 411 ( 25 n); score: 0.760
Intron 1 14869 15233 ( 365 n); Pd: 0.000 (s: 0), Pa: 0.765 (s: 0)
Exon 2 15234 15240 ( 7 n); cDNA 412 418 ( 7 n); score: 0.714
Intron 2 15241 15907 ( 667 n); Pd: 0.243 (s: 0), Pa: 0.000 (s: 0)
Exon 3 15908 15924 ( 17 n); cDNA 419 435 ( 17 n); score: 0.765
Intron 3 15925 15975 ( 51 n); Pd: 0.022 (s: 0), Pa: 0.993 (s: 0)
Exon 4 15976 15981 ( 6 n); cDNA 436 441 ( 6 n); score: 0.833
Intron 4 15982 16320 ( 339 n); Pd: 0.000 (s: 0), Pa: 0.818 (s: 0)
Exon 5 16321 16334 ( 14 n); cDNA 442 454 ( 13 n); score: 0.571
Intron 5 16335 16505 ( 171 n); Pd: 0.000 (s: 0), Pa: 0.758 (s: 0)
Exon 6 16506 16536 ( 31 n); cDNA 455 486 ( 32 n); score: 0.710
Intron 6 16537 16896 ( 360 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.62)
Exon 7 16897 17040 ( 144 n); cDNA 487 625 ( 139 n); score: 0.736
MATCH 21326110+ 14571087+ 0.736 244 0.390 C
PGS_21326110+_14571087+ (14844 14868,15234 15240,15908 15924,15976 15981,16321 16334,16506 16536,16897 17040)
Alignment (genomic DNA sequence = upper lines):
TTCTCCGCCA GCCATGCTTA CTGATGTTGC TGCCAGGTAC GCTACTCCTG TACTGGGAGC 14903
| || | | ||||||||| |||||
TGCTTCACTT GCCATGCTTT CTGAT..... .......... .......... .......... 411
TTGTATGTGA CTGCTTCTAA AGATGGTTCT CTGCGCATTT GGGATGGAGT ATCTGCTGAA 14963
.......... .......... .......... .......... .......... .......... 411
TGTGTTCGAC CTATTATTGG AGCACATGGA TCTGCAGAAG CTACTAGCGC AATTTTCACC 15023
.......... .......... .......... .......... .......... .......... 411
AGAGATGAGA GGTAAGCGAG CTACCAGCAT GTCTAAGGTG CTCTTCCCTC AAGATAAAAT 15083
.......... .......... .......... .......... .......... .......... 411
CCAGTCATTG TTTGGTTTGA AGAACAGAGA GAAAGGCATA TGCTGTATGA TTCAAGACAG 15143
.......... .......... .......... .......... .......... .......... 411
TAACTACTTC AAACCCTGTT TGGAATGTGG GAATCTTGTA GTGATTCTGA ATGATTTATA 15203
.......... .......... .......... .......... .......... .......... 411
ACATGTCCTG GATAATTTCC TGTGTTTCAG ACGTGTCGTA ACTTTATAAC ACGAATAACT 15263
|| |||
.......... .......... .......... ACATGTA... .......... .......... 418
CTTTCTCCTT TACCCTACTA TTTCACCACT AAACAACTAA CTTGCCTATA AACACTTTTT 15323
.......... .......... .......... .......... .......... .......... 418
AGACTTCTTC TGAAAGGCCT AGTGTTTATG TGGTTATATG CAGCGTGAAT GCACTTGCAT 15383
.......... .......... .......... .......... .......... .......... 418
ATAAGATTGA TCTAAAAAAT TGATGTAGTG AACTTTGACT ACCCGAAGTA TATGCTTAGA 15443
.......... .......... .......... .......... .......... .......... 418
TAGTTCATGG ATTTCTTTCA TAAAACTGCA CACTGTATTC TGGTTATCTG TTATGAAGTT 15503
.......... .......... .......... .......... .......... .......... 418
TACTACGTTC TTTCAGGTAT GTCCTATCTT GTGGGAAAGA TTCTTGTGTC AAGTTATGGG 15563
.......... .......... .......... .......... .......... .......... 418
AAGTTGGCAC TGGACGACTT GTGAAGCAAT ATGCAGGAGC CATTCGCAGA CAATTTCGTT 15623
.......... .......... .......... .......... .......... .......... 418
GTCAGGTTAG TTTCTCTGTG TTTCTATAAG ATTATTATTT TTTCCTGATT TAAATTTACT 15683
.......... .......... .......... .......... .......... .......... 418
CGTGTGCCAT ATATATTATT TTTACCCAAA ATTTTAGGAA ACAAAATATT GCAATTCTTT 15743
.......... .......... .......... .......... .......... .......... 418
AATTTGAAAA TAGGCTGGTT TGAGCTTGCA GCTTAGGATA ACAACATACC TAACCTTGCT 15803
.......... .......... .......... .......... .......... .......... 418
ATGATAGACA ATAAATATGA TAATAACTGT TCTTACTATC CAGGCTGTCT TCAATGAAAC 15863
.......... .......... .......... .......... .......... .......... 418
CGAAGAATTT GTTCTATCAG TTGATGAACA AAACAATGAG GTAAATTCC- AAATTGAGAA 15922
||||| |||||||| |
.......... .......... .......... .......... ....ATTCCA AAATTGAGTA 434
CAGTATATAT ATTTGTATTT CAGCAAGCTT AACTATGATA CGTCACTCTT CAGGTTGTCG 15982
| |||| |
-A........ .......... .......... .......... .......... ...GTTGCC. 441
TCTGGGATGC ACTTACTGCA GAAAAGGTTG CAAGATTGCC CTCTGGCAGC ACTGGTGCTC 16042
.......... .......... .......... .......... .......... .......... 441
CCAGATGGCT CGACCACTCC CCAGTTGAAC CAGTTTTTGT TATTTGTGGA AATGATAGAT 16102
.......... .......... .......... .......... .......... .......... 441
CGATCAGATT CTGGAAACAA ACCGTATAGC TTGTAGATTC AACCATTCAA ATCAAAAGTA 16162
.......... .......... .......... .......... .......... .......... 441
TGCTTTCAGT ATTACGTTTC AGGAGGAATG TGCTCATGTA ACTTTAGTTG TATATGGGAG 16222
.......... .......... .......... .......... .......... .......... 441
AAATTTGCAT AAGCATTTTT TTTATTGGAA ACTGCATAAG CAATTGATTG ATCTAATAGC 16282
.......... .......... .......... .......... .......... .......... 441
AAACCCCAAT GATATGTTTT TTTTTTGGCT CTGCATAGCT GATGACAGTT GTATGAACCC 16342
| | ||| |||
.......... .......... .......... ........AT CA-GACTGTT AG........ 454
TTGACCTGAT TCTTATTGGT CAGGCCCTTT TCGATGATTT GCTATTTTAT CCCAATTGTG 16402
.......... .......... .......... .......... .......... .......... 454
GATTGCGGAA TATATTTCTT CTTCGAATGT AATGATGGTC TCGCCCTACC ACATGTGTGA 16462
.......... .......... .......... .......... .......... .......... 454
TAGCCTATAA AAGTTCTACA ACACATTATT GCATTTCACT TAGGGCATGT TTAGATTG-A 16521
||| ||| |||| | | |
.......... .......... .......... .......... ...GGCCTGT TTAGTTCGCA 471
AGATGAAAAT TTTTTAGGTC ACATCGGATA TGTCGGAAGG ATGTCGGGAG GGGTTTTTAA 16581
|||||| |||||
CCCTGAAAAG TTTTT..... .......... .......... .......... .......... 486
AAACTAATAA AAAAAACAAA TTACATAACT CGTCAGGAAA CTGCAAGACG AATCTATTAA 16641
.......... .......... .......... .......... .......... .......... 486
GTATAATTAA TCTATTATTA GCACATGTGG GTTACTGTAG CACTTAAGGC TAATCATGGA 16701
.......... .......... .......... .......... .......... .......... 486
CTAACTAGGC TTAAAAAATT CATCTCGCGA TTTTCAACCA AACTGTGTAA TTATTTTTTA 16761
.......... .......... .......... .......... .......... .......... 486
TCTACATTTA ATGTTTTATG TATGTGTCTA AAGATTCAAT GTGATGGATG AAAATTTTTT 16821
.......... .......... .......... .......... .......... .......... 486
AGGTGGGAAC TAAACAGGGC CTTATATTTT TTAAAAAAGA TGTGCAAGTG TCAGGCCTTG 16881
.......... .......... .......... .......... .......... .......... 486
TTTAGTTTCG AAAACTTTTT GGTTTTTGAG ACTGTAGCAC TTTCGTTTTT ATTTGACAAA 16941
||||| || | |||||||||| | || | || | ||
.......... .....TTTTT GG--GGGGGT ACTGTAGCAC ATGTGTAACT ATAT--TAAT 527
TATTGTCTAA TCATAGAGTA ACTAGGTTTA AAAGATTTAT CTCGCGATTT ATAGGTAAAC 17001
|| ||||||| |||| || | ||||| | | |||| ||| | ||||| | | | | ||||||
TAGTGTCTAA TCATGGACCA ACTAGACTCA AAAGGTTTGT CTCGCAAAAT ACATGTAAAC 587
TGTGCAATTA GTTTTTATTT TTGTATATAT TTAATGCTT 17040
||||||||| ||| || ||| || | ||||| ||||||||
TGTGCAATTG GTTATT-TTT TTATCTATAT TTAATGCTC 625
********************************************************************************
EST sequence 184 +strand (File: 13469214+)
1 TCTGACAAGA GCAACGAAGA GAATAATTGA TCTACAGTTT CTTTCCCCCG TCTGAAACTT
61 TGGTTAGCTT AAATCTGGGA CACGTATTGG AACAGGAGTA CCATGGGAGT CTGCACTGCA
121 AAAAAAAAAT GCAGATTATC GATCTTAGAT AGAAGGAAAC ATAGTGGGGG GGAAAGGAAC
181 CTTTTGTTTT CTTTTACTAC AGAAGTATCA ATTCGTGCGT TTGTCCCGGT GTTAGTTTCT
241 TCAGGAAACG GACATTGAAC TTAACAGTGC AATTTTCAGA CTTTGCAGCA AGTGCCATCA
301 GACCACTCCA TTCTGTGTAG ACTCGGCCCT CAGGACGTTG TGGCCAACCT GACTATTCAC
361 ATCTTTTGTG CGCCGCCCGT TTCACTTTCG TGGTGTTTCC TTGTAGCCTT TTTTGTCTGC
421 CATGTTTGCT TGTTGCCAGA CGCTGAATCA GGCACGGCGG GCCTTGTTTA GTTCCAAAAT
481 ATTTTGCAAA ATCGACACTG TAGCTCTTTC GTTTGTATTT GACAAATATT GTCTAATCAT
541 AGACTAACTA GGTTC
Predicted gene structure (within gDNA segment 14280 to 17323):
Exon 1 14280 14311 ( 32 n); cDNA 379 409 ( 31 n); score: 0.656
Intron 1 14312 14527 ( 216 n); Pd: 0.979 (s: 0), Pa: 0.640 (s: 0)
Exon 2 14528 14537 ( 10 n); cDNA 410 419 ( 10 n); score: 0.800
Intron 2 14538 14854 ( 317 n); Pd: 0.000 (s: 0), Pa: 0.442 (s: 0)
Exon 3 14855 14879 ( 25 n); cDNA 420 439 ( 20 n); score: 0.720
Intron 3 14880 15883 (1004 n); Pd: 0.978 (s: 0), Pa: 0.361 (s: 0)
Exon 4 15884 15903 ( 20 n); cDNA 440 459 ( 20 n); score: 0.500
Intron 4 15904 16874 ( 971 n); Pd: 0.991 (s: 0), Pa: 0.000 (s: 0.74)
Exon 5 16875 16970 ( 96 n); cDNA 460 555 ( 96 n); score: 0.833
MATCH 21326110+ 13469214+ 0.833 183 0.330 C
PGS_21326110+_13469214+ (14280 14311,14528 14537,14855 14879,15884 15903,16875 16970)
Alignment (genomic DNA sequence = upper lines):
TTTTCATCCT TGTGGGGATT ACCTTTTAGC AGGTACTATG ATCTTTTCAC TAAATTTAAA 14339
||||| | |||| | || |||| ||||
GTTTCACTTT CGTGGTG-TT TCCTTGTAGC CT........ .......... .......... 409
TTTGATTTCT AGTTCTGCTG TGATTAACTG ATTCTTGATG TCTGATATCA GTTTGATATG 14399
.......... .......... .......... .......... .......... .......... 409
CTCTGATTTT TATGCATTAT AAGTTGTTAA CATGTTTTCA GTTGTTATCT GTAAAGTAAT 14459
.......... .......... .......... .......... .......... .......... 409
TTAATCATTT CACCAAAACA ATTTGATATT TGGGCTTAAG AATTTGGATT TCGTTCCTGG 14519
.......... .......... .......... .......... .......... .......... 409
ATCAACAGTT TCTGTCTCGT GGGCATTTGA AAAATACTGC AAGCATATCG TATGGAATTT 14579
|| | |||||
........TT TTTGTCTG.. .......... .......... .......... .......... 419
TCTTCTTACA TATAGTCAAA TATTAACATT CAAATATGTA TTTTTTTTAA AAAAACTCAT 14639
.......... .......... .......... .......... .......... .......... 419
TTTCATATAT TTGGAAGCAA GTGACACTGA TAAAATTATT TGCAGGGACT GATCACCCAG 14699
.......... .......... .......... .......... .......... .......... 419
TTGCTCATTT ATATGATATA AATACTTTTA CATGCTACTT ATCAGCAAAT GCACAGGATT 14759
.......... .......... .......... .......... .......... .......... 419
CTAGTTCTCC CATTAACCAG GTAGCTTTTC TCTTTCCTTC TGATTCACAA GCATTAGATT 14819
.......... .......... .......... .......... .......... .......... 419
GCATTGGTTA TATTCTCATC AAAGTTCTCC GCCAGCCATG CTTACTGATG TTGCTGCCAG 14879
||||| || || ||| ||||||
.......... .......... .......... .....CCATG -TT--TG--C TTGTTGCCAG 439
GTACGCTACT CCTGTACTGG GAGCTTGTAT GTGACTGCTT CTAAAGATGG TTCTCTGCGC 14939
.......... .......... .......... .......... .......... .......... 439
ATTTGGGATG GAGTATCTGC TGAATGTGTT CGACCTATTA TTGGAGCACA TGGATCTGCA 14999
.......... .......... .......... .......... .......... .......... 439
GAAGCTACTA GCGCAATTTT CACCAGAGAT GAGAGGTAAG CGAGCTACCA GCATGTCTAA 15059
.......... .......... .......... .......... .......... .......... 439
GGTGCTCTTC CCTCAAGATA AAATCCAGTC ATTGTTTGGT TTGAAGAACA GAGAGAAAGG 15119
.......... .......... .......... .......... .......... .......... 439
CATATGCTGT ATGATTCAAG ACAGTAACTA CTTCAAACCC TGTTTGGAAT GTGGGAATCT 15179
.......... .......... .......... .......... .......... .......... 439
TGTAGTGATT CTGAATGATT TATAACATGT CCTGGATAAT TTCCTGTGTT TCAGACGTGT 15239
.......... .......... .......... .......... .......... .......... 439
CGTAACTTTA TAACACGAAT AACTCTTTCT CCTTTACCCT ACTATTTCAC CACTAAACAA 15299
.......... .......... .......... .......... .......... .......... 439
CTAACTTGCC TATAAACACT TTTTAGACTT CTTCTGAAAG GCCTAGTGTT TATGTGGTTA 15359
.......... .......... .......... .......... .......... .......... 439
TATGCAGCGT GAATGCACTT GCATATAAGA TTGATCTAAA AAATTGATGT AGTGAACTTT 15419
.......... .......... .......... .......... .......... .......... 439
GACTACCCGA AGTATATGCT TAGATAGTTC ATGGATTTCT TTCATAAAAC TGCACACTGT 15479
.......... .......... .......... .......... .......... .......... 439
ATTCTGGTTA TCTGTTATGA AGTTTACTAC GTTCTTTCAG GTATGTCCTA TCTTGTGGGA 15539
.......... .......... .......... .......... .......... .......... 439
AAGATTCTTG TGTCAAGTTA TGGGAAGTTG GCACTGGACG ACTTGTGAAG CAATATGCAG 15599
.......... .......... .......... .......... .......... .......... 439
GAGCCATTCG CAGACAATTT CGTTGTCAGG TTAGTTTCTC TGTGTTTCTA TAAGATTATT 15659
.......... .......... .......... .......... .......... .......... 439
ATTTTTTCCT GATTTAAATT TACTCGTGTG CCATATATAT TATTTTTACC CAAAATTTTA 15719
.......... .......... .......... .......... .......... .......... 439
GGAAACAAAA TATTGCAATT CTTTAATTTG AAAATAGGCT GGTTTGAGCT TGCAGCTTAG 15779
.......... .......... .......... .......... .......... .......... 439
GATAACAACA TACCTAACCT TGCTATGATA GACAATAAAT ATGATAATAA CTGTTCTTAC 15839
.......... .......... .......... .......... .......... .......... 439
TATCCAGGCT GTCTTCAATG AAACCGAAGA ATTTGTTCTA TCAGTTGATG AACAAAACAA 15899
| || || | ||
.......... .......... .......... .......... ....ACGCTG AATCAGGCAC 455
TGAGGTAAAT TCCAAATTGA GAACAGTATA TATATTTGTA TTTCAGCAAG CTTAACTATG 15959
| |
GGCG...... .......... .......... .......... .......... .......... 459
ATACGTCACT CTTCAGGTTG TCGTCTGGGA TGCACTTACT GCAGAAAAGG TTGCAAGATT 16019
.......... .......... .......... .......... .......... .......... 459
GCCCTCTGGC AGCACTGGTG CTCCCAGATG GCTCGACCAC TCCCCAGTTG AACCAGTTTT 16079
.......... .......... .......... .......... .......... .......... 459
TGTTATTTGT GGAAATGATA GATCGATCAG ATTCTGGAAA CAAACCGTAT AGCTTGTAGA 16139
.......... .......... .......... .......... .......... .......... 459
TTCAACCATT CAAATCAAAA GTATGCTTTC AGTATTACGT TTCAGGAGGA ATGTGCTCAT 16199
.......... .......... .......... .......... .......... .......... 459
GTAACTTTAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTATTG GAAACTGCAT 16259
.......... .......... .......... .......... .......... .......... 459
AAGCAATTGA TTGATCTAAT AGCAAACCCC AATGATATGT TTTTTTTTTG GCTCTGCATA 16319
.......... .......... .......... .......... .......... .......... 459
GCTGATGACA GTTGTATGAA CCCTTGACCT GATTCTTATT GGTCAGGCCC TTTTCGATGA 16379
.......... .......... .......... .......... .......... .......... 459
TTTGCTATTT TATCCCAATT GTGGATTGCG GAATATATTT CTTCTTCGAA TGTAATGATG 16439
.......... .......... .......... .......... .......... .......... 459
GTCTCGCCCT ACCACATGTG TGATAGCCTA TAAAAGTTCT ACAACACATT ATTGCATTTC 16499
.......... .......... .......... .......... .......... .......... 459
ACTTAGGGCA TGTTTAGATT GAAGATGAAA ATTTTTTAGG TCACATCGGA TATGTCGGAA 16559
.......... .......... .......... .......... .......... .......... 459
GGATGTCGGG AGGGGTTTTT AAAAACTAAT AAAAAAAACA AATTACATAA CTCGTCAGGA 16619
.......... .......... .......... .......... .......... .......... 459
AACTGCAAGA CGAATCTATT AAGTATAATT AATCTATTAT TAGCACATGT GGGTTACTGT 16679
.......... .......... .......... .......... .......... .......... 459
AGCACTTAAG GCTAATCATG GACTAACTAG GCTTAAAAAA TTCATCTCGC GATTTTCAAC 16739
.......... .......... .......... .......... .......... .......... 459
CAAACTGTGT AATTATTTTT TATCTACATT TAATGTTTTA TGTATGTGTC TAAAGATTCA 16799
.......... .......... .......... .......... .......... .......... 459
ATGTGATGGA TGAAAATTTT TTAGGTGGGA ACTAAACAGG GCCTTATATT TTTTAAAAAA 16859
.......... .......... .......... .......... .......... .......... 459
GATGTGCAAG TGTCAGGCCT TGTTTAGTTT CGAAAACTTT TTGGTTTTTG AGACTGTAGC 16919
||||| ||||||||| | ||| ||| | | | | ||||||||
.......... .....GGCCT TGTTTAGTTC CAAAATATTT TGCAAAATCG ACACTGTAGC 504
ACTTTCGTTT TTATTTGACA AATATTGTCT AATCATAGAG TAACTAGGTT T 16970
||||||||| ||||||||| |||||||||| ||||||||| ||||||||||
TCTTTCGTTT GTATTTGACA AATATTGTCT AATCATAGAC TAACTAGGTT C 555
********************************************************************************
EST sequence 48 +strand (File: SBtuc02-10-21.3233+)
1 GTATCTGCTG AATGTGTTCG ACCTATTATT GGAGCACATG GATCTGCAGA AGCTACTAGC
61 GCAATTTTCA CCAGAGATGA GAGGTATGTC CTATCTTGTG GGAAAGATTC TTGTGTCAAG
121 TTATGGGAAG TTGGCACTGG ACGACTTGTG AAGCAATATG CAGGAGCCAT TCGCAGACAA
181 TTTCGTTGTC AGGCTGTCTT CAATGAAACC GAAGAATTTG TTCTATCAGT TGATGAACAA
241 AACAATGAGG TTGTCGTCTG GGATGCACTT ACTGCAGAAA AGGTTGCAAG ATTGCCCTCT
301 GGCAGCACTG GTGCTCCCAG ATGGCTCGAC CACTCCCCAG TTGAACCAGT TTTTGTTATT
361 TGTGGAAATG ATAGATCGAT CAGATTCTGG AAACAAACCG TATAGCTTGT AGATTCAACC
421 ATTCAAATCA AAAGTATGCT TTCAGTATTA CGTTTCAGGA GGAATGTGCT CATGTAACTT
481 TAGTTGTATA TGGGAGAAAT TTGCATAAGC ATTTTTTTTA TTGGAAACTG CATAAGCAAT
541 TGATTGATAT AATAGCAAAC CCCAATGATA GTTTTTT
Predicted gene structure (within gDNA segment 14652 to 16636):
Exon 1 14952 15034 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000
Intron 1 15035 15519 ( 485 n); Pd: 0.794 (s: 1.00), Pa: 0.933 (s: 1.00)
Exon 2 15520 15628 ( 109 n); cDNA 84 192 ( 109 n); score: 1.000
Intron 2 15629 15846 ( 218 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00)
Exon 3 15847 15903 ( 57 n); cDNA 193 249 ( 57 n); score: 1.000
Intron 3 15904 15975 ( 72 n); Pd: 0.991 (s: 1.00), Pa: 0.993 (s: 1.00)
Exon 4 15976 16304 ( 329 n); cDNA 250 577 ( 328 n); score: 0.994
MATCH 21326110+ SBtuc02-10-21.3233+ 0.997 578 1.002 C
PGS_21326110+_SBtuc02-10-21.3233+ (14952 15034,15520 15628,15847 15903,15976 16304)
Alignment (genomic DNA sequence = upper lines):
GTATCTGCTG AATGTGTTCG ACCTATTATT GGAGCACATG GATCTGCAGA AGCTACTAGC 15011
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTATCTGCTG AATGTGTTCG ACCTATTATT GGAGCACATG GATCTGCAGA AGCTACTAGC 60
GCAATTTTCA CCAGAGATGA GAGGTAAGCG AGCTACCAGC ATGTCTAAGG TGCTCTTCCC 15071
|||||||||| |||||||||| |||
GCAATTTTCA CCAGAGATGA GAG....... .......... .......... .......... 83
TCAAGATAAA ATCCAGTCAT TGTTTGGTTT GAAGAACAGA GAGAAAGGCA TATGCTGTAT 15131
.......... .......... .......... .......... .......... .......... 83
GATTCAAGAC AGTAACTACT TCAAACCCTG TTTGGAATGT GGGAATCTTG TAGTGATTCT 15191
.......... .......... .......... .......... .......... .......... 83
GAATGATTTA TAACATGTCC TGGATAATTT CCTGTGTTTC AGACGTGTCG TAACTTTATA 15251
.......... .......... .......... .......... .......... .......... 83
ACACGAATAA CTCTTTCTCC TTTACCCTAC TATTTCACCA CTAAACAACT AACTTGCCTA 15311
.......... .......... .......... .......... .......... .......... 83
TAAACACTTT TTAGACTTCT TCTGAAAGGC CTAGTGTTTA TGTGGTTATA TGCAGCGTGA 15371
.......... .......... .......... .......... .......... .......... 83
ATGCACTTGC ATATAAGATT GATCTAAAAA ATTGATGTAG TGAACTTTGA CTACCCGAAG 15431
.......... .......... .......... .......... .......... .......... 83
TATATGCTTA GATAGTTCAT GGATTTCTTT CATAAAACTG CACACTGTAT TCTGGTTATC 15491
.......... .......... .......... .......... .......... .......... 83
TGTTATGAAG TTTACTACGT TCTTTCAGGT ATGTCCTATC TTGTGGGAAA GATTCTTGTG 15551
|| |||||||||| |||||||||| ||||||||||
.......... .......... ........GT ATGTCCTATC TTGTGGGAAA GATTCTTGTG 115
TCAAGTTATG GGAAGTTGGC ACTGGACGAC TTGTGAAGCA ATATGCAGGA GCCATTCGCA 15611
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCAAGTTATG GGAAGTTGGC ACTGGACGAC TTGTGAAGCA ATATGCAGGA GCCATTCGCA 175
GACAATTTCG TTGTCAGGTT AGTTTCTCTG TGTTTCTATA AGATTATTAT TTTTTCCTGA 15671
|||||||||| |||||||
GACAATTTCG TTGTCAG... .......... .......... .......... .......... 192
TTTAAATTTA CTCGTGTGCC ATATATATTA TTTTTACCCA AAATTTTAGG AAACAAAATA 15731
.......... .......... .......... .......... .......... .......... 192
TTGCAATTCT TTAATTTGAA AATAGGCTGG TTTGAGCTTG CAGCTTAGGA TAACAACATA 15791
.......... .......... .......... .......... .......... .......... 192
CCTAACCTTG CTATGATAGA CAATAAATAT GATAATAACT GTTCTTACTA TCCAGGCTGT 15851
|||||
.......... .......... .......... .......... .......... .....GCTGT 197
CTTCAATGAA ACCGAAGAAT TTGTTCTATC AGTTGATGAA CAAAACAATG AGGTAAATTC 15911
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||
CTTCAATGAA ACCGAAGAAT TTGTTCTATC AGTTGATGAA CAAAACAATG AG........ 249
CAAATTGAGA ACAGTATATA TATTTGTATT TCAGCAAGCT TAACTATGAT ACGTCACTCT 15971
.......... .......... .......... .......... .......... .......... 249
TCAGGTTGTC GTCTGGGATG CACTTACTGC AGAAAAGGTT GCAAGATTGC CCTCTGGCAG 16031
|||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
....GTTGTC GTCTGGGATG CACTTACTGC AGAAAAGGTT GCAAGATTGC CCTCTGGCAG 305
CACTGGTGCT CCCAGATGGC TCGACCACTC CCCAGTTGAA CCAGTTTTTG TTATTTGTGG 16091
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CACTGGTGCT CCCAGATGGC TCGACCACTC CCCAGTTGAA CCAGTTTTTG TTATTTGTGG 365
AAATGATAGA TCGATCAGAT TCTGGAAACA AACCGTATAG CTTGTAGATT CAACCATTCA 16151
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAATGATAGA TCGATCAGAT TCTGGAAACA AACCGTATAG CTTGTAGATT CAACCATTCA 425
AATCAAAAGT ATGCTTTCAG TATTACGTTT CAGGAGGAAT GTGCTCATGT AACTTTAGTT 16211
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AATCAAAAGT ATGCTTTCAG TATTACGTTT CAGGAGGAAT GTGCTCATGT AACTTTAGTT 485
GTATATGGGA GAAATTTGCA TAAGCATTTT TTTTATTGGA AACTGCATAA GCAATTGATT 16271
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTATATGGGA GAAATTTGCA TAAGCATTTT TTTTATTGGA AACTGCATAA GCAATTGATT 545
GATCTAATAG CAAACCCCAA TGATATGTTT TTT 16304
||| |||||| |||||||||| ||||| |||| |||
GATATAATAG CAAACCCCAA TGATA-GTTT TTT 577
********************************************************************************
EST sequence 288 -strand (File: 5688746-)
1 GGGAGCAATT CGCAGACAAT TTCGTTGTCA GGCTGTCTTC AATGAAACCG AGGAATTTGT
61 GCTATCAGTT GATGAACAAA ACAATGAGGT TGTCGTCTGG GATGCACTTA CTGCTGAAAA
121 GGTTACAAGA TTGCCTTCTG GCAGCACTGG TGCTCCTAGA TGGCTCGACC ATTCCCCAGT
181 TGAGCCAGTT TTTGTTAGTT GTGGAAACGA TAGATCGATC AAATTCTGGA AACAAACCGT
241 ATAAGCTTGT AGATTCAACC ACGCAAATCA AAAGAGTATG TTTTCAGTAT TACTGTTTCA
301 GGAGGAATGT GCTAGTGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCGATTTTT
361 TTTTGAAACT GCATAAGCAA TTGTTTGACC TAATAGCAAA TCCCAA
Predicted gene structure (within gDNA segment 15265 to 16683):
Exon 1 15598 15628 ( 31 n); cDNA 1 31 ( 31 n); score: 0.935
Intron 1 15629 15846 ( 218 n); Pd: 1.000 (s: 0), Pa: 0.995 (s: 0.96)
Exon 2 15847 15903 ( 57 n); cDNA 32 88 ( 57 n); score: 0.965
Intron 2 15904 15975 ( 72 n); Pd: 0.991 (s: 0.96), Pa: 0.993 (s: 0.94)
Exon 3 15976 16291 ( 316 n); cDNA 89 406 ( 318 n); score: 0.908
MATCH 21326110+ 5688746- 0.917 404 0.995 C
PGS_21326110+_5688746- (15598 15628,15847 15903,15976 16291)
Alignment (genomic DNA sequence = upper lines):
AGGAGCCATT CGCAGACAAT TTCGTTGTCA GGTTAGTTTC TCTGTGTTTC TATAAGATTA 15657
||||| ||| |||||||||| |||||||||| |
GGGAGCAATT CGCAGACAAT TTCGTTGTCA G......... .......... .......... 31
TTATTTTTTC CTGATTTAAA TTTACTCGTG TGCCATATAT ATTATTTTTA CCCAAAATTT 15717
.......... .......... .......... .......... .......... .......... 31
TAGGAAACAA AATATTGCAA TTCTTTAATT TGAAAATAGG CTGGTTTGAG CTTGCAGCTT 15777
.......... .......... .......... .......... .......... .......... 31
AGGATAACAA CATACCTAAC CTTGCTATGA TAGACAATAA ATATGATAAT AACTGTTCTT 15837
.......... .......... .......... .......... .......... .......... 31
ACTATCCAGG CTGTCTTCAA TGAAACCGAA GAATTTGTTC TATCAGTTGA TGAACAAAAC 15897
| |||||||||| ||||||||| |||||||| | |||||||||| ||||||||||
.........G CTGTCTTCAA TGAAACCGAG GAATTTGTGC TATCAGTTGA TGAACAAAAC 82
AATGAGGTAA ATTCCAAATT GAGAACAGTA TATATATTTG TATTTCAGCA AGCTTAACTA 15957
||||||
AATGAG.... .......... .......... .......... .......... .......... 88
TGATACGTCA CTCTTCAGGT TGTCGTCTGG GATGCACTTA CTGCAGAAAA GGTTGCAAGA 16017
|| |||||||||| |||||||||| |||| ||||| |||| |||||
.......... ........GT TGTCGTCTGG GATGCACTTA CTGCTGAAAA GGTTACAAGA 130
TTGCCCTCTG GCAGCACTGG TGCTCCCAGA TGGCTCGACC ACTCCCCAGT TGAACCAGTT 16077
||||| |||| |||||||||| |||||| ||| |||||||||| | |||||||| ||| ||||||
TTGCCTTCTG GCAGCACTGG TGCTCCTAGA TGGCTCGACC ATTCCCCAGT TGAGCCAGTT 190
TTTGTTATTT GTGGAAATGA TAGATCGATC AGATTCTGGA AACAAACCGT AT-AGCTTGT 16136
||||||| || ||||||| || |||||||||| | |||||||| |||||||||| || |||||||
TTTGTTAGTT GTGGAAACGA TAGATCGATC AAATTCTGGA AACAAACCGT ATAAGCTTGT 250
AGATTCAACC ATTCAAATC- AAA-AGTATG CTTTCAGTAT TAC-GTTTCA GGAGGAATGT 16193
|||||||||| | |||||| ||| |||||| ||||||||| ||| |||||| ||||||||||
AGATTCAACC ACGCAAATCA AAAGAGTATG TTTTCAGTAT TACTGTTTCA GGAGGAATGT 310
GCTCATGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCATTTTTT TTATTGGAAA 16253
||| ||||| |||||||||| |||||||||| |||||||||| ||| ||||| || || ||||
GCTAGTGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCGATTTTT TT-TT-GAAA 368
CTGCATAAGC AATTGATTGA TCTAATAGCA AACCCCAA 16291
|||||||||| ||||| |||| ||||||||| || |||||
CTGCATAAGC AATTGTTTGA CCTAATAGCA AATCCCAA 406
********************************************************************************
EST sequence 289 -strand (File: 12973578-)
1 AATTCGCAGA CAATTTCGTT GTCAGGCTGT CTTCAATGAA ACCGAGGAAT TTGTGCTATC
61 AGTTGATGAA CAAAACAATG AGGTTGTCGT CTGGGATGCA CTTACTGCTG AAAAGGTTAC
121 AAGATTGCCT TCTGGCAGCA CTGGTGCTCC TAGATGGCTC GACCATTCCC CAGTTGAGCC
181 AGTTTTTGTT AGTTGTGGAA ACGATAGATC GATCAAATTC TGGAAACAAA CCGTATAAGC
241 TTGTAGATTC AACCACGCAA ATCAAAAAAA AAAATATTCA GTATTACTGT TTCAGGAGGA
301 ATGTGCTAGT GTAACTTNAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTTGAA
361 ACTGCATAAG CAATTGTTTG ACCTAATAGC AAATCCCAAT CAGATGTTTT TTTTGGT
Predicted gene structure (within gDNA segment 15295 to 16773):
Exon 1 15604 15628 ( 25 n); cDNA 1 25 ( 25 n); score: 0.960
Intron 1 15629 15846 ( 218 n); Pd: 1.000 (s: 0), Pa: 0.995 (s: 0.96)
Exon 2 15847 15903 ( 57 n); cDNA 26 82 ( 57 n); score: 0.965
Intron 2 15904 15975 ( 72 n); Pd: 0.991 (s: 0.96), Pa: 0.993 (s: 0.94)
Exon 3 15976 16309 ( 334 n); cDNA 83 417 ( 335 n); score: 0.886
MATCH 21326110+ 12973578- 0.898 416 0.998 C
PGS_21326110+_12973578- (15604 15628,15847 15903,15976 16309)
Alignment (genomic DNA sequence = upper lines):
CATTCGCAGA CAATTTCGTT GTCAGGTTAG TTTCTCTGTG TTTCTATAAG ATTATTATTT 15663
||||||||| |||||||||| |||||
AATTCGCAGA CAATTTCGTT GTCAG..... .......... .......... .......... 25
TTTCCTGATT TAAATTTACT CGTGTGCCAT ATATATTATT TTTACCCAAA ATTTTAGGAA 15723
.......... .......... .......... .......... .......... .......... 25
ACAAAATATT GCAATTCTTT AATTTGAAAA TAGGCTGGTT TGAGCTTGCA GCTTAGGATA 15783
.......... .......... .......... .......... .......... .......... 25
ACAACATACC TAACCTTGCT ATGATAGACA ATAAATATGA TAATAACTGT TCTTACTATC 15843
.......... .......... .......... .......... .......... .......... 25
CAGGCTGTCT TCAATGAAAC CGAAGAATTT GTTCTATCAG TTGATGAACA AAACAATGAG 15903
||||||| |||||||||| ||| |||||| || ||||||| |||||||||| ||||||||||
...GCTGTCT TCAATGAAAC CGAGGAATTT GTGCTATCAG TTGATGAACA AAACAATGAG 82
GTAAATTCCA AATTGAGAAC AGTATATATA TTTGTATTTC AGCAAGCTTA ACTATGATAC 15963
.......... .......... .......... .......... .......... .......... 82
GTCACTCTTC AGGTTGTCGT CTGGGATGCA CTTACTGCAG AAAAGGTTGC AAGATTGCCC 16023
|||||||| |||||||||| |||||||| | |||||||| | |||||||||
.......... ..GTTGTCGT CTGGGATGCA CTTACTGCTG AAAAGGTTAC AAGATTGCCT 130
TCTGGCAGCA CTGGTGCTCC CAGATGGCTC GACCACTCCC CAGTTGAACC AGTTTTTGTT 16083
|||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||||||||||
TCTGGCAGCA CTGGTGCTCC TAGATGGCTC GACCATTCCC CAGTTGAGCC AGTTTTTGTT 190
ATTTGTGGAA ATGATAGATC GATCAGATTC TGGAAACAAA CCGTAT-AGC TTGTAGATTC 16142
| |||||||| | |||||||| ||||| |||| |||||||||| |||||| ||| ||||||||||
AGTTGTGGAA ACGATAGATC GATCAAATTC TGGAAACAAA CCGTATAAGC TTGTAGATTC 250
AACCATTCAA ATC-AAAAGT ATGCT-TTCA GTATTAC-GT TTCAGGAGGA ATGTGCTCAT 16199
||||| ||| ||| |||| | | |||| ||||||| || |||||||||| ||||||| |
AACCACGCAA ATCAAAAAAA AAAATATTCA GTATTACTGT TTCAGGAGGA ATGTGCTAGT 310
GTAACTTTAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTATTG GAAACTGCAT 16259
||||||| || |||||||||| |||||||||| |||||||| | |||||| || ||||||||||
GTAACTTNAG TTGTATATGG GAGAAATTTG CATAAGCA-T TTTTTT-TT- GAAACTGCAT 367
AAGCAATTGA TTGATCTAAT AGCAAACCCC AATGATATGT TTTTTTTTTG 16309
||||||||| |||| ||||| |||||| ||| ||| | |||| |||||||
AAGCAATTGT TTGACCTAAT AGCAAATCCC AATCAGATGT TTTTTTTGGT 417
********************************************************************************
EST sequence 232 -strand (File: 7218093-)
1 TTGGCGTGGA CACGTGAGTT GACACCACAG CCTTGGATGT AAACCGAAGT GGTGGCCCAA
61 ATTCCATCCT TTCACTAAAT TTGAGAAAAA TGAAAGATCA AATGCTAACT CAAAACTCAA
121 AGTTGAAAGG ACAAAAACCT GTGTAGCATA GCAATTAGGC AAGTATTTAT CAATGAGGCC
181 TTGTTTAGTT TCAAGACGAA AAGTTTTTGT GTGTCACATC AAATATGTCG GCACATATTT
241 AAAGTACTAA ACATAGACTA ATAAAAAAAC AAATTACATA ACTTGCCTGG AAAGTGTGAG
301 ACGAATTTAT TAAACCTAAT TAATCCGGCA TTAGCACATG TGGGCTACTG TAGCAGCTAT
361 GGCTACTTAT GGGCTAATTA GGCTTAAAAG ATCCATCTCG CGATTTACAA CCAAACTGTG
421 CAATTAGTTT TCGTTTTCGT CTACATTTAA TGCTCCATAC ATATGTCCAA AGATTTGATG
481 TGATGGATAA AAAGTTTTTT TGGGTGAAGA ACTAAACAAG GACTAAGTGA AGCAAATCAT
541 CACCAATCAA GAGAAATAAA CCCTCTTTGA TCGTGCCTCG TGC
Predicted gene structure (within gDNA segment 14999 to 17729):
Exon 1 14999 15034 ( 36 n); cDNA 97 129 ( 33 n); score: 0.583
Intron 1 15035 15779 ( 745 n); Pd: 0.794 (s: 0), Pa: 0.188 (s: 0)
Exon 2 15780 15807 ( 28 n); cDNA 130 157 ( 28 n); score: 0.607
Intron 2 15808 15883 ( 76 n); Pd: 0.000 (s: 0), Pa: 0.361 (s: 0)
Exon 3 15884 15903 ( 20 n); cDNA 158 177 ( 20 n); score: 0.550
Intron 3 15904 16505 ( 602 n); Pd: 0.991 (s: 0), Pa: 0.758 (s: 0.73)
Exon 4 16506 16747 ( 242 n); cDNA 178 419 ( 242 n); score: 0.769
Intron 4 16748 17004 ( 257 n); Pd: 0.780 (s: 0.90), Pa: 0.000 (s: 0.80)
Exon 5 17005 17091 ( 87 n); cDNA 420 500 ( 81 n); score: 0.770
MATCH 21326110+ 7218093- 0.769 413 0.708 C
PGS_21326110+_7218093- (14999 15034,15780 15807,15884 15903,16506 16747,17005 17091)
Alignment (genomic DNA sequence = upper lines):
AGAAGCTACT AGCGCAATTT TCACCAGAGA TGAGAGGTAA GCGAGCTACC AGCATGTCTA 15058
| | | || | | ||| ||| | || ||| ||
ATCAAATGCT AACTCAAAAC TCA--A-AGT TGAAAG.... .......... .......... 129
AGGTGCTCTT CCCTCAAGAT AAAATCCAGT CATTGTTTGG TTTGAAGAAC AGAGAGAAAG 15118
.......... .......... .......... .......... .......... .......... 129
GCATATGCTG TATGATTCAA GACAGTAACT ACTTCAAACC CTGTTTGGAA TGTGGGAATC 15178
.......... .......... .......... .......... .......... .......... 129
TTGTAGTGAT TCTGAATGAT TTATAACATG TCCTGGATAA TTTCCTGTGT TTCAGACGTG 15238
.......... .......... .......... .......... .......... .......... 129
TCGTAACTTT ATAACACGAA TAACTCTTTC TCCTTTACCC TACTATTTCA CCACTAAACA 15298
.......... .......... .......... .......... .......... .......... 129
ACTAACTTGC CTATAAACAC TTTTTAGACT TCTTCTGAAA GGCCTAGTGT TTATGTGGTT 15358
.......... .......... .......... .......... .......... .......... 129
ATATGCAGCG TGAATGCACT TGCATATAAG ATTGATCTAA AAAATTGATG TAGTGAACTT 15418
.......... .......... .......... .......... .......... .......... 129
TGACTACCCG AAGTATATGC TTAGATAGTT CATGGATTTC TTTCATAAAA CTGCACACTG 15478
.......... .......... .......... .......... .......... .......... 129
TATTCTGGTT ATCTGTTATG AAGTTTACTA CGTTCTTTCA GGTATGTCCT ATCTTGTGGG 15538
.......... .......... .......... .......... .......... .......... 129
AAAGATTCTT GTGTCAAGTT ATGGGAAGTT GGCACTGGAC GACTTGTGAA GCAATATGCA 15598
.......... .......... .......... .......... .......... .......... 129
GGAGCCATTC GCAGACAATT TCGTTGTCAG GTTAGTTTCT CTGTGTTTCT ATAAGATTAT 15658
.......... .......... .......... .......... .......... .......... 129
TATTTTTTCC TGATTTAAAT TTACTCGTGT GCCATATATA TTATTTTTAC CCAAAATTTT 15718
.......... .......... .......... .......... .......... .......... 129
AGGAAACAAA ATATTGCAAT TCTTTAATTT GAAAATAGGC TGGTTTGAGC TTGCAGCTTA 15778
.......... .......... .......... .......... .......... .......... 129
GGATAACAAC ATACCTAACC TTGCTATGAT AGACAATAAA TATGATAATA ACTGTTCTTA 15838
|| || ||| | || | | || || |
.GACAAAAAC CTGTGTAGCA TAGCAATTA. .......... .......... .......... 157
CTATCCAGGC TGTCTTCAAT GAAACCGAAG AATTTGTTCT ATCAGTTGAT GAACAAAACA 15898
| | | | ||
.......... .......... .......... .......... .....GGCAA GTATTTATCA 172
ATGAGGTAAA TTCCAAATTG AGAACAGTAT ATATATTTGT ATTTCAGCAA GCTTAACTAT 15958
|||||
ATGAG..... .......... .......... .......... .......... .......... 177
GATACGTCAC TCTTCAGGTT GTCGTCTGGG ATGCACTTAC TGCAGAAAAG GTTGCAAGAT 16018
.......... .......... .......... .......... .......... .......... 177
TGCCCTCTGG CAGCACTGGT GCTCCCAGAT GGCTCGACCA CTCCCCAGTT GAACCAGTTT 16078
.......... .......... .......... .......... .......... .......... 177
TTGTTATTTG TGGAAATGAT AGATCGATCA GATTCTGGAA ACAAACCGTA TAGCTTGTAG 16138
.......... .......... .......... .......... .......... .......... 177
ATTCAACCAT TCAAATCAAA AGTATGCTTT CAGTATTACG TTTCAGGAGG AATGTGCTCA 16198
.......... .......... .......... .......... .......... .......... 177
TGTAACTTTA GTTGTATATG GGAGAAATTT GCATAAGCAT TTTTTTTATT GGAAACTGCA 16258
.......... .......... .......... .......... .......... .......... 177
TAAGCAATTG ATTGATCTAA TAGCAAACCC CAATGATATG TTTTTTTTTT GGCTCTGCAT 16318
.......... .......... .......... .......... .......... .......... 177
AGCTGATGAC AGTTGTATGA ACCCTTGACC TGATTCTTAT TGGTCAGGCC CTTTTCGATG 16378
.......... .......... .......... .......... .......... .......... 177
ATTTGCTATT TTATCCCAAT TGTGGATTGC GGAATATATT TCTTCTTCGA ATGTAATGAT 16438
.......... .......... .......... .......... .......... .......... 177
GGTCTCGCCC TACCACATGT GTGATAGCCT ATAAAAGTTC TACAACACAT TATTGCATTT 16498
.......... .......... .......... .......... .......... .......... 177
CACTTAGGGC ATGTTTAGAT TGAAGATGAA AA-TTTTT-T AGGTCACATC GGATATGTCG 16556
| | ||||||| | | |||| ||| || ||||| | |||||||| ||||||||
.......GCC TTGTTTAGTT TCAAGACGAA AAGTTTTTGT GTGTCACATC AAATATGTCG 230
GAAGGATGTC GGGAGGGGTT TTTAAAAACT AATAAAAAAA ACAAATTACA TAACTCGTCA 16616
| | || | || | | | ||| |||||||||| ||||||||| ||||| | |
GCA-CATATT TAAAGTACTA AACATAGACT AATAAAAAAA -CAAATTACA TAACTTGCCT 288
GGAAACTGCA AGACGAATCT ATTAAGTATA ATTAATCTAT TATTAGCACA TGTGGGTTAC 16676
||||| || |||||||| | ||||| || ||||||| ||||||||| |||||| |||
GGAAAGTGTG AGACGAATTT ATTAAACCTA ATTAATCCGG CATTAGCACA TGTGGGCTAC 348
TGTAGCACTT AAGGCTAATC ATGGACTAAC TAGGCTTAAA AAATTCATCT CGCGATTTTC 16736
||||||| | | ||||| | |||| |||| |||||||||| | || ||||| |||||||| |
TGTAGCAGCT ATGGCTACTT ATGGGCTAAT TAGGCTTAAA AGATCCATCT CGCGATTTAC 408
AACCAAACTG TGTAATTATT TTTTATCTAC ATTTAATGTT TTATGTATGT GTCTAAAGAT 16796
|||||||||| |
AACCAAACTG T......... .......... .......... .......... .......... 419
TCAATGTGAT GGATGAAAAT TTTTTAGGTG GGAACTAAAC AGGGCCTTAT ATTTTTTAAA 16856
.......... .......... .......... .......... .......... .......... 419
AAAGATGTGC AAGTGTCAGG CCTTGTTTAG TTTCGAAAAC TTTTTGGTTT TTGAGACTGT 16916
.......... .......... .......... .......... .......... .......... 419
AGCACTTTCG TTTTTATTTG ACAAATATTG TCTAATCATA GAGTAACTAG GTTTAAAAGA 16976
.......... .......... .......... .......... .......... .......... 419
TTTATCTCGC GATTTATAGG TAAACTGTGC AATTAGTTTT TATTTTTGTA TATATTTAAT 17036
|| |||||||||| |||| || || |||||||
.......... .......... ........GC AATTAGTTTT CGTTTTCGTC TACATTTAAT 451
GCTTCATGCA TGTGTCGTAA TATTTGATGT GTTGAGAAAT TTTGAAAAGT TTTTG 17091
||| ||| || | |||| || ||||||||| | || | | | |||||| ||||
GCTCCATACA TATGTCCAAA GATTTGATGT GATG-G--A- --TAAAAAGT TTTTT 500
********************************************************************************
EST sequence 208 -strand (File: 12622939-)
1 TTTTTTTTTT TTTTTCTTGT AAGTTACGGG TCCTTAAGTT GGTTATGCAA GATGGAGGAG
61 GAATAACAGG GAAGGTAAGT ACCCAGGTAA CTACCCAACT ACCCAACGGT ATTTAGTTGT
121 ACGGCCAATT TTTTTTTTAA AGTATACGGA CACATATTTA AAGTATTAAA TATAGATTAA
181 TAACAAAATA AATTACAGAT TCCGCCTGTA AGCTAANAGA CGAATCTATT AAGCCTAATT
241 AATCTGTCAT TAGCAAATGT TTACTGTAGC ACCATATTGT CAAATCATGA CGTAATTAAA
301 CTCAAAAAAT TTGACTCGCA ATTTACATGC AAACTGTGTA ATTGGTTTTT TTACTCGTCC
361 ACATTTAATG CTATATACAT GTGTCTAAAT ATTTGATGTG ACNAAATTTC TGAAAGTTCG
421 AGGAGAACTA AACATATCCA ATTT
Predicted gene structure (within gDNA segment 15237 to 17587):
Exon 1 15884 15903 ( 20 n); cDNA 158 177 ( 20 n); score: 0.550
Intron 1 15904 16585 ( 682 n); Pd: 0.991 (s: 0), Pa: 0.000 (s: 0.72)
Exon 2 16586 16685 ( 100 n); cDNA 178 273 ( 96 n); score: 0.770
Intron 2 16686 16940 ( 255 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.74)
Exon 3 16941 17066 ( 126 n); cDNA 274 399 ( 126 n); score: 0.762
PPA cDNA 15 1
MATCH 21326110+ 12622939- 0.765 246 0.554 C
PGS_21326110+_12622939- (15884 15903,16586 16685,16941 17066)
Alignment (genomic DNA sequence = upper lines):
TTGATGAACA AAACAATGAG GTAAATTCCA AATTGAGAAC AGTATATATA TTTGTATTTC 15943
|| | | | ||| | ||
TTAAAGTATT AAATATAGAT .......... .......... .......... .......... 177
AGCAAGCTTA ACTATGATAC GTCACTCTTC AGGTTGTCGT CTGGGATGCA CTTACTGCAG 16003
.......... .......... .......... .......... .......... .......... 177
AAAAGGTTGC AAGATTGCCC TCTGGCAGCA CTGGTGCTCC CAGATGGCTC GACCACTCCC 16063
.......... .......... .......... .......... .......... .......... 177
CAGTTGAACC AGTTTTTGTT ATTTGTGGAA ATGATAGATC GATCAGATTC TGGAAACAAA 16123
.......... .......... .......... .......... .......... .......... 177
CCGTATAGCT TGTAGATTCA ACCATTCAAA TCAAAAGTAT GCTTTCAGTA TTACGTTTCA 16183
.......... .......... .......... .......... .......... .......... 177
GGAGGAATGT GCTCATGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCATTTTTT 16243
.......... .......... .......... .......... .......... .......... 177
TTATTGGAAA CTGCATAAGC AATTGATTGA TCTAATAGCA AACCCCAATG ATATGTTTTT 16303
.......... .......... .......... .......... .......... .......... 177
TTTTTGGCTC TGCATAGCTG ATGACAGTTG TATGAACCCT TGACCTGATT CTTATTGGTC 16363
.......... .......... .......... .......... .......... .......... 177
AGGCCCTTTT CGATGATTTG CTATTTTATC CCAATTGTGG ATTGCGGAAT ATATTTCTTC 16423
.......... .......... .......... .......... .......... .......... 177
TTCGAATGTA ATGATGGTCT CGCCCTACCA CATGTGTGAT AGCCTATAAA AGTTCTACAA 16483
.......... .......... .......... .......... .......... .......... 177
CACATTATTG CATTTCACTT AGGGCATGTT TAGATTGAAG ATGAAAATTT TTTAGGTCAC 16543
.......... .......... .......... .......... .......... .......... 177
ATCGGATATG TCGGAAGGAT GTCGGGAGGG GTTTTTAAAA ACTAATAAAA AAAACAAATT 16603
|||| || |||| |||||
.......... .......... .......... .......... ..TAAT-AAC AAAATAAATT 194
ACATAACTCG TCAGGAAACT GCAAGACGAA TCTATTAAGT ATAATTAATC TATTATTAGC 16663
||| | || | | || || ||||||| ||||||||| ||||||||| | | ||||||
ACAGATTCCG CCTGTAAGCT AANAGACGAA TCTATTAAGC CTAATTAATC TGTCATTAGC 254
ACATGTGGGT TACTGTAGCA CTTAAGGCTA ATCATGGACT AACTAGGCTT AAAAAATTCA 16723
| |||| | |||||||||| |
AAATGT---T TACTGTAGCA CC........ .......... .......... .......... 273
TCTCGCGATT TTCAACCAAA CTGTGTAATT ATTTTTTATC TACATTTAAT GTTTTATGTA 16783
.......... .......... .......... .......... .......... .......... 273
TGTGTCTAAA GATTCAATGT GATGGATGAA AATTTTTTAG GTGGGAACTA AACAGGGCCT 16843
.......... .......... .......... .......... .......... .......... 273
TATATTTTTT AAAAAAGATG TGCAAGTGTC AGGCCTTGTT TAGTTTCGAA AACTTTTTGG 16903
.......... .......... .......... .......... .......... .......... 273
TTTTTGAGAC TGTAGCACTT TCGTTTTTAT TTGACAAATA TTGTCTAATC ATAGAGTAAC 16963
||| ||||| |||| || ||||
.......... .......... .......... .......ATA TTGTCAAATC ATGACGTAAT 296
TAGGTTTAAA AGATTTATCT CGCGATTTAT AGGTAAACTG TGCAATTAGT TTTTATTTTT 17023
|| | ||| | |||| || ||| ||||| | | |||||| || |||| || |||| | |
TAAACTCAAA AAATTTGACT CGCAATTTAC ATGCAAACTG TGTAATTGGT TTTTTTACTC 356
GTATATATTT AATGCTTCAT GCATGTGTCG TAATATTTGA TGT 17066
|| | |||| |||||| || |||||||| ||||||||| |||
GTCCACATTT AATGCTATAT ACATGTGTCT AAATATTTGA TGT 399
********************************************************************************
EST sequence 207 -strand (File: OStuc02-10-21.5805-)
1 TTTTTTTTTT TTTTTTTTTT AACCTAAGAC CCTATTTAGA TGGGACTAAA ACTTTTAAGT
61 CCTTATCACA TCGGATGTTG GATATTAATT ACAAATATTA AACGTAGACT ATTAATATAA
121 CACATCCATA ATCTTGGACT AATTCACAAG ACGAATCTAT TAAGCCTAAT TAATCCAGAC
181 GAATCTATTG AGCCTAATTA ATCCATGATT AGCCTATGTG ATGCTACAGT AAACATTCTC
241 TAAATATAGA TTAATTAGGC TTAAAAAATT TATCTCGCAA ATTAGCTTTC ATTTATGTAA
301 TTAGTTTTGT AAGTAGTCTA TATTTAATAG ACTAAATTAG TGTCTAAATA CAGAGACTAA
361 AGTTAAGTCC CTGGATCCAA ACACCACCTA AAGCCCTAAC AAGAGATCCA TGATCTCAGA
421 TTAAACGTCA TACAGACAAT TCACCCATAT TACAATGCAT TGCCATATCT CAAAGCCACT
481 AAAACTTATC CTCGAATCCT AGCCCATCGA TCTCATTCGC TTTCCATAGC AGGATCTCAA
541 TCTCCAACAG AAGCTCTGGA AACTCACCAT ATAAGCATTC CTCTACCTCC AATTGACTAT
601 AAGCAAAGAT CCACAGATGT ACGTAAAAAT GAGAGCGGAC ATTCCAGTTA AAGCTCATGT
661 CATCATCCCC GGTACTCACG TATTCCCTAT GGCTATTCAA CCATCTTCTG AGAAAGCGGT
721 TGGAAATAAC TATGCCTAGC CAAATCCCAT CATACGGCAA CTTTGCTAAT AATCTGATTC
781 TTCAGTCTTG GTTGCTCCTG GGCGAGCTTA CCCATGATGT GATTGTAAAA TAATAGAAAT
841 ACCGCCGTCC TGTTAGCATC AGGTATAAGC GAAGCGNGTT GCTGATGATG TACTCCTGAC
901 AAACCGATGT CATGCTCTCC ATCTGGCGGA GTAGACGGCG AAAATCGGCA ATACAATCCA
961 CACCAATAGC TTCAGACCCC ACAGACTCTG TAATCAGCTC TTTCAGAATG GAAGCAGTTT
1021 CATTGTATCG ACAAACAAGC TTCTTCCTCA CTGGTAANGA ATCTCTATAA CA
Predicted gene structure (within gDNA segment 15590 to 21031):
Exon 1 15775 15846 ( 72 n); cDNA 111 178 ( 68 n); score: 0.625
Intron 1 15847 16628 ( 782 n); Pd: 0.000 (s: 0.58), Pa: 0.000 (s: 0.76)
Exon 2 16629 16679 ( 51 n); cDNA 179 230 ( 52 n); score: 0.765
Intron 2 16680 16938 ( 259 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.82)
Exon 3 16939 17036 ( 98 n); cDNA 231 328 ( 98 n); score: 0.735
PPA cDNA 20 1
MATCH 21326110+ OStuc02-10-21.5805- 0.706 221 0.206 C
PGS_21326110+_OStuc02-10-21.5805- (15775 15846,16629 16679,16939 17036)
Alignment (genomic DNA sequence = upper lines):
CTTAGGATAA CAACATACCT AACCTTGCTA TGATAGACAA TAAATATGAT AATAACTGTT 15834
||| |||| | |||| | | || |||| | || |||| | || | | ||| |
ATTAATATAA C-ACATCCAT AATCTTGGAC TAATTCACAA GACGAAT-CT ATTAAGCCTA 168
CTTACTATCC AGGCTGTCTT CAATGAAACC GAAGAATTTG TTCTATCAGT TGATGAACAA 15894
||| |||| ||
ATTA--ATCC AG........ .......... .......... .......... .......... 178
AACAATGAGG TAAATTCCAA ATTGAGAACA GTATATATAT TTGTATTTCA GCAAGCTTAA 15954
.......... .......... .......... .......... .......... .......... 178
CTATGATACG TCACTCTTCA GGTTGTCGTC TGGGATGCAC TTACTGCAGA AAAGGTTGCA 16014
.......... .......... .......... .......... .......... .......... 178
AGATTGCCCT CTGGCAGCAC TGGTGCTCCC AGATGGCTCG ACCACTCCCC AGTTGAACCA 16074
.......... .......... .......... .......... .......... .......... 178
GTTTTTGTTA TTTGTGGAAA TGATAGATCG ATCAGATTCT GGAAACAAAC CGTATAGCTT 16134
.......... .......... .......... .......... .......... .......... 178
GTAGATTCAA CCATTCAAAT CAAAAGTATG CTTTCAGTAT TACGTTTCAG GAGGAATGTG 16194
.......... .......... .......... .......... .......... .......... 178
CTCATGTAAC TTTAGTTGTA TATGGGAGAA ATTTGCATAA GCATTTTTTT TATTGGAAAC 16254
.......... .......... .......... .......... .......... .......... 178
TGCATAAGCA ATTGATTGAT CTAATAGCAA ACCCCAATGA TATGTTTTTT TTTTGGCTCT 16314
.......... .......... .......... .......... .......... .......... 178
GCATAGCTGA TGACAGTTGT ATGAACCCTT GACCTGATTC TTATTGGTCA GGCCCTTTTC 16374
.......... .......... .......... .......... .......... .......... 178
GATGATTTGC TATTTTATCC CAATTGTGGA TTGCGGAATA TATTTCTTCT TCGAATGTAA 16434
.......... .......... .......... .......... .......... .......... 178
TGATGGTCTC GCCCTACCAC ATGTGTGATA GCCTATAAAA GTTCTACAAC ACATTATTGC 16494
.......... .......... .......... .......... .......... .......... 178
ATTTCACTTA GGGCATGTTT AGATTGAAGA TGAAAATTTT TTAGGTCACA TCGGATATGT 16554
.......... .......... .......... .......... .......... .......... 178
CGGAAGGATG TCGGGAGGGG TTTTTAAAAA CTAATAAAAA AAACAAATTA CATAACTCGT 16614
.......... .......... .......... .......... .......... .......... 178
CAGGAAACTG CAAGACGAAT CTATTAAGTA TAATTAATCT ATTATTAGCA CATGTG-GGT 16673
|||||| ||||| || ||||||||| || |||||| ||||| |
.......... ....ACGAAT CTATTGAGCC TAATTAATCC ATGATTAGCC TATGTGATGC 224
TACTGTAGCA CTTAAGGCTA ATCATGGACT AACTAGGCTT AAAAAATTCA TCTCGCGATT 16733
||| ||
TACAGT.... .......... .......... .......... .......... .......... 230
TTCAACCAAA CTGTGTAATT ATTTTTTATC TACATTTAAT GTTTTATGTA TGTGTCTAAA 16793
.......... .......... .......... .......... .......... .......... 230
GATTCAATGT GATGGATGAA AATTTTTTAG GTGGGAACTA AACAGGGCCT TATATTTTTT 16853
.......... .......... .......... .......... .......... .......... 230
AAAAAAGATG TGCAAGTGTC AGGCCTTGTT TAGTTTCGAA AACTTTTTGG TTTTTGAGAC 16913
.......... .......... .......... .......... .......... .......... 230
TGTAGCACTT TCGTTTTTAT TTGACAAATA TTGTCTAATC ATAGAGTAAC TAGGTTTAAA 16973
||| | || ||||| ||||| ||| |||| |||||
.......... .......... .....AAACA TTCTCTAAAT ATAGATTAAT TAGGCTTAAA 265
AGATTTATCT CGCGATTTAT AGGTAAACTG TGCAATTAGT TTTTATTTTT GTATATATTT 17033
| |||||||| ||| | ||| | | | || ||||||| ||| | || |||||||
AAATTTATCT CGCAAATTAG CTTTCATTTA TGTAATTAGT TTTGTAAGTA GTCTATATTT 325
AAT 17036
|||
AAT 328
********************************************************************************
EST sequence 79 +strand (File: SBtuc02-10-21.6900+)
1 GCACGAGGGA CAAGTTGTAG CAGAGGAAAT CGATCAGGAA GAGATCGAGA AGATGGGGAG
61 GCAGCAGCTT TGCATGGTGT TCCTGATGGC GTTCCTCGTC GTCTCTACCA TGGACGTTGT
121 CCACGTGGCC GCAGGGAGAG GGCTAGGGGA GGGGAGCTAT GGAGCCTTGA TCCCCGGCGG
181 CACGCCTTCC GTGCCTCGTG GCCAGCCATA CACTGGCCGA ACATGCACAA AAATCTACGC
241 GTGTAAACCG CCTGCTGCTG CTGACGCTGA CGCCGCCGGC GGAGCGCCAT GACGACGATC
301 AGCATGCTTG GCCTGTTTAG ATTGGGGCTG AAAATTTTTT GGGTGTCACA TCGAATGTGT
361 GGGAAGGATG TCGGGAGGGA TTTTTAGAAA CTAATAAAAA AATAAATTAC ATAGCTCGTC
421 AGGAAACTGC AAGACAAATT TATTAAGCAT AATTAATCTG TCATTAGCAT ATGTGGGTTA
481 CTGTAGCACT TAAGGCTAAT CATGGAGTAA CTAGGCTTAA AAGATTCGTC TCGCGATTCT
541 CAACTAAACT GTGTAATTAG TTTATTTTTT TATCTACATT TAATGTTCCA TGCATGTGTC
601 CAAAGATTCG ATGGGATGGA TGAAAAAATT TTTGGTGGGG AACTAAACAG GGCCTAAGAA
661 TAATAATTTC CTTTGAACAA CAAGGCGCCT CTAGTCTAGG CTCTACATAA TCACTAGTAG
721 TAATCAGGTT AGTATGAGTC TATATAATAA TTTAATAAGA TCCAAACTGT AATTGGGCGG
781 AGGCGCTGTG TGTGCATGTA CCCGTGATGG AGATGTAAGT GGGATGTTCG TAAGCCTGGA
841 GTCTTGAGAT GAAGGCAAAT TATTGAACTA TTCTGTGCCA AGTTGTTTAT ACTCTCCACT
901 CCCACCATAC TACTACTAGT GGTATGCCCA TGCTAACGTC ACGGAAAAAG TTAAAAAGAC
961 AATAGGTTTC TATAAAATAA GAATATATAT AGCACAAAAA TAAAAGACTG AATGTGTTCA
1021 ATCTAACATG GATCTCACAT CTTTTCACTT CGCATCCTCT GGAACGCCAT GAAGATATAG
1081 AACGTTGTTG CACCTGTATG TAGATGTACA AACATAAGAA TTGAATCATA CAAGGGCCAA
1141 AGATCCAAAT TCTAAAAAGT TCTAAAAGGT GCACACCAAT TTAAGTTTTG AAGCCCTAGC
1201 CTTCCTTCAC ATGTAACTTG ATCAACACTA CCATAGTACT TTCTAAGTAT CTGTACTTGG
1261 AGTAGGGCAG CTGGATGACA GGATGGATGA TAGCTTTTCC TAGTTTTATA TCTAGATTTA
1321 TTACAAAACA AAACTACTTG ACATGAGCTT ACAATTGATT TAGTGATAAA AGCTATAGAA
1381 GTAAATTTAC AATTGATTTA GTGATAAAAG CTATAAAAGT ATATTTAGCT TTCTTCAAAT
1441 GAATGTCCCA TCGAGCACAG ACTTGAATTT TAGAAACATG ACCACATGAA TGTCATTGCT
1501 CCTTCAAATA CTTTGCCTCT GCACGCAACC TGCAGCACAG TTTTAGCTTC ACATCAAATA
1561 CCTCAGCTCA CAGTCTGATG TGGAACAACT TTGCAAGATG TATTTTTTTT TTTCTCACCT
1621 GGATCGTCGA TGACAAACGT GACAGCATCC CTGTGCATAG CCCCACCTGA TTTAGGCAAC
1681 GTGGTTCAAA TTAAATTTGC AGAAAACATG TCCTTATTCA CCACTTTGAT CCTGTCAATG
1741 TACCAATGTC ACCTCAGTCA TATACACTTA TCACTATTCA CCAATGTCCT TATTCACCAC
1801 TTTGATTCTA TAGCAGGTTT TGTAGTTCAG GAAAACAAAT CTTGTGT
Predicted gene structure (within gDNA segment 14585 to 23108):
Exon 1 14745 14779 ( 35 n); cDNA 220 250 ( 31 n); score: 0.600
Intron 1 14780 14854 ( 75 n); Pd: 0.995 (s: 0), Pa: 0.442 (s: 0)
Exon 2 14855 14879 ( 25 n); cDNA 251 272 ( 22 n); score: 0.680
Intron 2 14880 15233 ( 354 n); Pd: 0.978 (s: 0), Pa: 0.765 (s: 0)
Exon 3 15234 15240 ( 7 n); cDNA 273 278 ( 6 n); score: 0.286
Intron 3 15241 15846 ( 606 n); Pd: 0.243 (s: 0), Pa: 0.995 (s: 0)
Exon 4 15847 15878 ( 32 n); cDNA 279 309 ( 31 n); score: 0.500
Intron 4 15879 16505 ( 627 n); Pd: 0.000 (s: 0), Pa: 0.758 (s: 0.77)
Exon 5 16506 16846 ( 341 n); cDNA 310 658 ( 349 n); score: 0.845
Intron 5 16847 20682 (3836 n); Pd: 0.000 (s: 0.82), Pa: 0.401 (s: 0.62)
Exon 6 20683 20737 ( 55 n); cDNA 659 702 ( 44 n); score: 0.636
Intron 6 20738 21626 ( 889 n); Pd: 0.414 (s: 0.64), Pa: 0.999 (s: 0)
Exon 7 21627 21645 ( 19 n); cDNA 703 720 ( 18 n); score: 0.474
Intron 7 21646 21850 ( 205 n); Pd: 0.000 (s: 0), Pa: 0.064 (s: 0)
Exon 8 21851 21866 ( 16 n); cDNA 721 735 ( 15 n); score: 0.688
Intron 8 21867 23072 (1206 n); Pd: 0.420 (s: 0), Pa: 0.440 (s: 0)
Exon 9 23073 23108 ( 36 n); cDNA 736 766 ( 31 n); score: 0.611
MATCH 21326110+ SBtuc02-10-21.6900+ 0.816 566 0.306 C
PGS_21326110+_SBtuc02-10-21.6900+ (14745 14779,14855 14879,15234 15240,15847 15878,16506 16846,20683 20737,21627 21645,21851 21866,23073 23108)
Alignment (genomic DNA sequence = upper lines):
CAAATGCACA GGATTCTAGT TCTCCCATTA ACCAGGTAGC TTTTCTCTTT CCTTCTGATT 14804
| ||||||| | |||| | | | | ||| |
AACATGCACA AAAATCTA-- -CGCGTGTAA ACC-G..... .......... .......... 250
CACAAGCATT AGATTGCATT GGTTATATTC TCATCAAAGT TCTCCGCCAG CCATGCTTAC 14864
|| ||| | |
.......... .......... .......... .......... .......... CC-TGC-TGC 258
TGATGTTGCT GCCAGGTACG CTACTCCTGT ACTGGGAGCT TGTATGTGAC TGCTTCTAAA 14924
|| || ||| | | |
TGCTGACGCT GAC-G..... .......... .......... .......... .......... 272
GATGGTTCTC TGCGCATTTG GGATGGAGTA TCTGCTGAAT GTGTTCGACC TATTATTGGA 14984
.......... .......... .......... .......... .......... .......... 272
GCACATGGAT CTGCAGAAGC TACTAGCGCA ATTTTCACCA GAGATGAGAG GTAAGCGAGC 15044
.......... .......... .......... .......... .......... .......... 272
TACCAGCATG TCTAAGGTGC TCTTCCCTCA AGATAAAATC CAGTCATTGT TTGGTTTGAA 15104
.......... .......... .......... .......... .......... .......... 272
GAACAGAGAG AAAGGCATAT GCTGTATGAT TCAAGACAGT AACTACTTCA AACCCTGTTT 15164
.......... .......... .......... .......... .......... .......... 272
GGAATGTGGG AATCTTGTAG TGATTCTGAA TGATTTATAA CATGTCCTGG ATAATTTCCT 15224
.......... .......... .......... .......... .......... .......... 272
GTGTTTCAGA CGTGTCGTAA CTTTATAACA CGAATAACTC TTTCTCCTTT ACCCTACTAT 15284
||
.........C CG-CCG.... .......... .......... .......... .......... 278
TTCACCACTA AACAACTAAC TTGCCTATAA ACACTTTTTA GACTTCTTCT GAAAGGCCTA 15344
.......... .......... .......... .......... .......... .......... 278
GTGTTTATGT GGTTATATGC AGCGTGAATG CACTTGCATA TAAGATTGAT CTAAAAAATT 15404
.......... .......... .......... .......... .......... .......... 278
GATGTAGTGA ACTTTGACTA CCCGAAGTAT ATGCTTAGAT AGTTCATGGA TTTCTTTCAT 15464
.......... .......... .......... .......... .......... .......... 278
AAAACTGCAC ACTGTATTCT GGTTATCTGT TATGAAGTTT ACTACGTTCT TTCAGGTATG 15524
.......... .......... .......... .......... .......... .......... 278
TCCTATCTTG TGGGAAAGAT TCTTGTGTCA AGTTATGGGA AGTTGGCACT GGACGACTTG 15584
.......... .......... .......... .......... .......... .......... 278
TGAAGCAATA TGCAGGAGCC ATTCGCAGAC AATTTCGTTG TCAGGTTAGT TTCTCTGTGT 15644
.......... .......... .......... .......... .......... .......... 278
TTCTATAAGA TTATTATTTT TTCCTGATTT AAATTTACTC GTGTGCCATA TATATTATTT 15704
.......... .......... .......... .......... .......... .......... 278
TTACCCAAAA TTTTAGGAAA CAAAATATTG CAATTCTTTA ATTTGAAAAT AGGCTGGTTT 15764
.......... .......... .......... .......... .......... .......... 278
GAGCTTGCAG CTTAGGATAA CAACATACCT AACCTTGCTA TGATAGACAA TAAATATGAT 15824
.......... .......... .......... .......... .......... .......... 278
AATAACTGTT CTTACTATCC AGGCTGTCTT CAATGAAACC GAAGAATTTG TTCTATCAGT 15884
|| | | |||| | || | || | |
.......... .......... ..GCGGAGCG CCATGACGAC GATCAGCATG CT-T...... 309
TGATGAACAA AACAATGAGG TAAATTCCAA ATTGAGAACA GTATATATAT TTGTATTTCA 15944
.......... .......... .......... .......... .......... .......... 309
GCAAGCTTAA CTATGATACG TCACTCTTCA GGTTGTCGTC TGGGATGCAC TTACTGCAGA 16004
.......... .......... .......... .......... .......... .......... 309
AAAGGTTGCA AGATTGCCCT CTGGCAGCAC TGGTGCTCCC AGATGGCTCG ACCACTCCCC 16064
.......... .......... .......... .......... .......... .......... 309
AGTTGAACCA GTTTTTGTTA TTTGTGGAAA TGATAGATCG ATCAGATTCT GGAAACAAAC 16124
.......... .......... .......... .......... .......... .......... 309
CGTATAGCTT GTAGATTCAA CCATTCAAAT CAAAAGTATG CTTTCAGTAT TACGTTTCAG 16184
.......... .......... .......... .......... .......... .......... 309
GAGGAATGTG CTCATGTAAC TTTAGTTGTA TATGGGAGAA ATTTGCATAA GCATTTTTTT 16244
.......... .......... .......... .......... .......... .......... 309
TATTGGAAAC TGCATAAGCA ATTGATTGAT CTAATAGCAA ACCCCAATGA TATGTTTTTT 16304
.......... .......... .......... .......... .......... .......... 309
TTTTGGCTCT GCATAGCTGA TGACAGTTGT ATGAACCCTT GACCTGATTC TTATTGGTCA 16364
.......... .......... .......... .......... .......... .......... 309
GGCCCTTTTC GATGATTTGC TATTTTATCC CAATTGTGGA TTGCGGAATA TATTTCTTCT 16424
.......... .......... .......... .......... .......... .......... 309
TCGAATGTAA TGATGGTCTC GCCCTACCAC ATGTGTGATA GCCTATAAAA GTTCTACAAC 16484
.......... .......... .......... .......... .......... .......... 309
ACATTATTGC ATTTCACTTA GGGCATGTTT AGATTGAAGA TGAAAATTTT TTAGG--TCA 16542
||| ||||| |||||| | |||||||||| || || |||
.......... .......... .GGCCTGTTT AGATTGGGGC TGAAAATTTT TTGGGTGTCA 348
CATCGGATAT GTCGGAAGGA TGTCGGGAGG GGTTTTTAAA AACTAATAAA AAAAACAAAT 16602
||||| || | || ||||||| |||||||||| | |||||| | ||||||| || ||||| ||||
CATCGAATGT GTGGGAAGGA TGTCGGGAGG GATTTTTAGA AACTAAT-AA AAAAATAAAT 407
TACATAACTC GTCAGGAAAC TGCAAGACGA ATCTATTAAG TATAATTAAT CTATTATTAG 16662
|||||| ||| |||||||||| |||||||| | || ||||||| ||||||||| || | |||||
TACATAGCTC GTCAGGAAAC TGCAAGACAA ATTTATTAAG CATAATTAAT CTGTCATTAG 467
CACATGTGGG TTACTGTAGC ACTTAAGGCT AATCATGGAC TAACTAGGCT TAAAAAATTC 16722
|| ||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||| ||||
CATATGTGGG TTACTGTAGC ACTTAAGGCT AATCATGGAG TAACTAGGCT TAAAAGATTC 527
ATCTCGCGAT TTTCAACCAA ACTGTGT-A- -A--TTA-TT TTTTATCTAC ATTTAATGTT 16776
||||||||| | ||||| || ||||||| | | ||| || |||||||||| ||||||||||
GTCTCGCGAT TCTCAACTAA ACTGTGTAAT TAGTTTATTT TTTTATCTAC ATTTAATGTT 587
TTATGTATGT GTCTAAAGAT TCAATGTGAT GGATGAAAAT TTTTTAGGT- GGGAACTAAA 16835
||| |||| ||| |||||| || ||| ||| ||||||||| |||| ||| ||||||||||
CCATGCATGT GTCCAAAGAT TCGATGGGAT GGATGAAAAA ATTTTTGGTG GGGAACTAAA 647
CAGGGCCTTA TATTTTTTAA AAAAGATGTG CAAGTGTCAG GCCTTGTTTA GTTTCGAAAA 16895
|||||||| |
CAGGGCCTAA G......... .......... .......... .......... .......... 658
CTTTTTGGTT TTTGAGACTG TAGCACTTTC GTTTTTATTT GACAAATATT GTCTAATCAT 16955
.......... .......... .......... .......... .......... .......... 658
AGAGTAACTA GGTTTAAAAG ATTTATCTCG CGATTTATAG GTAAACTGTG CAATTAGTTT 17015
.......... .......... .......... .......... .......... .......... 658
TTATTTTTGT ATATATTTAA TGCTTCATGC ATGTGTCGTA ATATTTGATG TGTTGAGAAA 17075
.......... .......... .......... .......... .......... .......... 658
TTTTGAAAAG TTTTTGGTTT TTGGGGTGAG TGGAGAAAAA AGAGAAGCTC CTTTCGAGGA 17135
.......... .......... .......... .......... .......... .......... 658
AGCTCTCTGC GGCCTGTGGC TGCGGGTGAC TGGGTGTGGT CGTGTGGGCC TAGCGGGACT 17195
.......... .......... .......... .......... .......... .......... 658
GCGGGAAGGA AGAATTTGAC CGGATTCTCT ATGTCACGTG GGCCTAGAAT GGGATGGCCC 17255
.......... .......... .......... .......... .......... .......... 658
ATCCGAGCCC GACCCATATT TGCCAGATTC GAGTGAACTG GCTCCAACTA AACAATTTTC 17315
.......... .......... .......... .......... .......... .......... 658
CCCATTTGCC ATTCCCGACG AGCACCTTCA CCGTCTCCTC CCACCTCGCG TGGCACGCCA 17375
.......... .......... .......... .......... .......... .......... 658
TGGCTTTCTC CCCGCGCTCG CCGTGGTCGC GTCCCAAGAG AAACGACGTC TACTCAACCT 17435
.......... .......... .......... .......... .......... .......... 658
TCGTCGTCCA CGGCGATGAC GACGAGGACG ACGCCCGCGG CAGCAGGCGC GGCAGGGGCC 17495
.......... .......... .......... .......... .......... .......... 658
CGTCCACGCG GGCGGAGGAA GACGAGGAGG AAGACCCCTC CTCGCTGCCT CCGCTTCTCC 17555
.......... .......... .......... .......... .......... .......... 658
AGCGGCTCCC CAAGGACTTC GGCGGCCCCT CCTTTGACGA AGACGAGGAC GCCTACTCCT 17615
.......... .......... .......... .......... .......... .......... 658
CCGACCCCGA CGATGCTTCC CTCTCCGCTA CGGTGGTCTT CAAGAGCGGC GCCCCGGCCT 17675
.......... .......... .......... .......... .......... .......... 658
CCGCTCGATC TCCGTTCCTG GATCTGCGGC GCTCCAGCCC CCGCGCTACC GATGACGACC 17735
.......... .......... .......... .......... .......... .......... 658
CATACTCTAC CTTCGTCGTC CACTCCACCG CACGCTCGGG GGGGACCTCC TCCAGCCCTC 17795
.......... .......... .......... .......... .......... .......... 658
GAGGGTCCGC CTCAGGCACA TTCATCCGTC GCTCCGGGGG CTCGTCCAGC CCTCACGAAT 17855
.......... .......... .......... .......... .......... .......... 658
CCGTCTCTGG CACATTCATC CGCCGGACTA GCACCCCGTC GAGCCCCCGG GACTCGGTCT 17915
.......... .......... .......... .......... .......... .......... 658
CCGGCACATT CATCCGCCGA CCAGGGAGCC CGTCGAGCCC CCGCGGGTCG TTCTCTGGCA 17975
.......... .......... .......... .......... .......... .......... 658
CCTTCATTCG CCACACCAGC GGGGGTTCCA GTTCCTATGA ATCTGCTTCT GGCGGCGGCG 18035
.......... .......... .......... .......... .......... .......... 658
GGGGTTTCGG GTCCTCTTTC TGGAGTCCAG CGGTGGAGCA GACAGAGGAG CTCCGGCAAC 18095
.......... .......... .......... .......... .......... .......... 658
CGTCGCCTCT GATGCAGCAA CAACAGCAGC AGCATTCAAG GCGGAAGCCA TCAGTGAGCT 18155
.......... .......... .......... .......... .......... .......... 658
CGGCGCCAGA CAGTGTTACC AGAGAGGATC CTTCCACCAA GTACGAGCTG CTCCATGAGC 18215
.......... .......... .......... .......... .......... .......... 658
TTGGTGCGCC TCTTGCTCTG GAATTATTGT TTCATTAGTT CTGTATGTCT ACTTGTAGAA 18275
.......... .......... .......... .......... .......... .......... 658
TGGCTGAAGC TTTGAGCTGT TTTGCGAAAT GCAAAATTCA ATTGGGAATG CAGGGAAAGG 18335
.......... .......... .......... .......... .......... .......... 658
CTCATATGGT GCAGTGTACA AAGCAAGGGA TCTCAGAACG CAGGAGCTTG TGGCTGTCAA 18395
.......... .......... .......... .......... .......... .......... 658
GATTATCTCA CTAACAGAAG GGGTTAGTTT CTAATTTTCT ATTACAAAGT TCTGTGAATA 18455
.......... .......... .......... .......... .......... .......... 658
TTCTGAAAGG CCACCCGAGA CATATTTCAT ATTTGGCAAC CATATTGCTT TTGTTGTGAG 18515
.......... .......... .......... .......... .......... .......... 658
CATTTTGTTT GCATGGGCTC AATTGTGAGA GAATCTCATA AATGTGGTTG CTGTCTGTTT 18575
.......... .......... .......... .......... .......... .......... 658
TCCGAGTCGT TGCATTTTTC CAAAATATAA GTATGTATCT TTGGTTTTCA GGAAGAAGGA 18635
.......... .......... .......... .......... .......... .......... 658
TATGAAGACA TACGGGGAGA AATTGAGATG CTGCAGCAGT GTAGCCATCC AAATGTTGTC 18695
.......... .......... .......... .......... .......... .......... 658
CGCTACTTTG GAAGCTACCA AGGAGAGGAC TACCTATGGG TACAATCAAA TAGCCTGATA 18755
.......... .......... .......... .......... .......... .......... 658
GTATCCATTT TATTAACATT AAGAAATAAC TATCATTGGG AGATTTCTCT ACTTCTTGAG 18815
.......... .......... .......... .......... .......... .......... 658
TCATTTAACA TGGGCTTGAT GCAAATGCGA TTCTCAACTT ACAGATAGTT ATGGAGTACT 18875
.......... .......... .......... .......... .......... .......... 658
GTGGTGGTGG AAGTGTTGCT GATTTGATAG GCATCACAGA GGAGCCTCTT GATGAATCCC 18935
.......... .......... .......... .......... .......... .......... 658
AAATAGCTTA TATATGTAGA GAAGCACTAA AGGTTCTAAC ATAGTTGCAT CAGATTTGAA 18995
.......... .......... .......... .......... .......... .......... 658
GTATTTGCTG CCTTGTTGGG CAACTAAATG TATTTGGATA TTGAACTTTT GCGTGCTTAT 19055
.......... .......... .......... .......... .......... .......... 658
TTTCTTCCAG GGCCTTGCTT ACCTGCACTC CATTTTTAAA GTTCATAGAG ATATTAAGGG 19115
.......... .......... .......... .......... .......... .......... 658
TGGCAACATT CTTCTAACTG AGCAAGGCGA GGTGAAGTTG GGTAAGCACA TTTGTTTTCT 19175
.......... .......... .......... .......... .......... .......... 658
TCAAAAGTTT TAGTTTGCAT TCTTAGCACC CATATTTCTG CATGTCCTGA CTCTGTGGTC 19235
.......... .......... .......... .......... .......... .......... 658
GGCATGCTGT GGCGCCACAA CAATGTGCAA AACAGGTGAT TTTGGTGTAG CTGCCCAGCT 19295
.......... .......... .......... .......... .......... .......... 658
GACAAGAACC ATGTCAAAGC GCAACACGGT ATTCTAAACA GTGTTTGTTT TGCCATTCAA 19355
.......... .......... .......... .......... .......... .......... 658
ATCCATAGTT CAAGAAACTT CACATCGATG TAACAAACAA AATGAAGTGG CAGATGAAAC 19415
.......... .......... .......... .......... .......... .......... 658
TTGTCCATGC CAGTTTACCA TAAGCGGACC CATTTGTGCT TGTGCATAGT TCTTCAATGT 19475
.......... .......... .......... .......... .......... .......... 658
GATGGTACTT TTATGGGAAC TTGAAGCAAG TCTGTGTTGG AAAATGATTG CTGTGAAGTC 19535
.......... .......... .......... .......... .......... .......... 658
CTAACTGTTT CTTTAAGTGT CATACTGCAA GTGCATTATG GTCTATTAGG TTTAAAATGA 19595
.......... .......... .......... .......... .......... .......... 658
AAAATAAGAA AGTATATATT TGTTATCTAG TATGCCTCGC CTAATTCCTT GGCATTTCTT 19655
.......... .......... .......... .......... .......... .......... 658
CCATTCTTTG AAACCCATAC TGGTGGAACC TAGTTGAAGT GGTTCCTGTA CAAATACTCT 19715
.......... .......... .......... .......... .......... .......... 658
CTGCACTGCT TCTTCTCCCT TTCTTGTCGT GACAGCCTCT AGTCCCCATA TATCCCATTA 19775
.......... .......... .......... .......... .......... .......... 658
TGAATCTGCT CACTCCCCCA TTTGGCTTCT TCCTAGGCCA CCACTCAACA ATTCTTCTGT 19835
.......... .......... .......... .......... .......... .......... 658
TCTTGATGAC TGCGATGCTC CATTCGATCT GGCAAATTGC TGCCTTGCTG GAGCTATTCA 19895
.......... .......... .......... .......... .......... .......... 658
AGAACGTAGA GGGTTACTGT GACATTAGCA TATCAAACCA ACAGGTCTGT TGGAAATCAT 19955
.......... .......... .......... .......... .......... .......... 658
AATCACAATG AACCTCCAAG TGGGAAATAT TATCCAGGGC GTCATCTTAC CTCCAAGTTA 20015
.......... .......... .......... .......... .......... .......... 658
TGGACTCTGC TTGACACTAG AGGAAGAGTT AGTGCACAGG GAGTCCAAAT CAGGTAGGAT 20075
.......... .......... .......... .......... .......... .......... 658
AGTTGATAGT TCATAATTGG CTAGATCTAG GAGGAGGTAT GTGAGTGAGA GTTTGGAAAA 20135
.......... .......... .......... .......... .......... .......... 658
TCAGGGTAGA ATACAAGTTC AGGTTCCCTA GGACGATGAT ATAATGTAGT ACCATACTAC 20195
.......... .......... .......... .......... .......... .......... 658
AAGAATTGAC TATGGAATTT ATTAATATCT AGCTAGAAAC CAATATAAAA AAACAATCTA 20255
.......... .......... .......... .......... .......... .......... 658
CTCCCCTTTC TACTGCTGCT GATACTTCTA CTCTTTTTTT TTTCTCTCTT GTACACCTTC 20315
.......... .......... .......... .......... .......... .......... 658
TTGGCTGCTA CACTTCTCTA GTTTCCAATC ATGACAATAC ATAAATGCTT GAGGAGCCCA 20375
.......... .......... .......... .......... .......... .......... 658
TAACAAATAG TTCTACCCCA CCCACCCACA CCCTTTCGTA GTAAAGTGTG CCGACAACAG 20435
.......... .......... .......... .......... .......... .......... 658
TTGGTGCCCT CTTCTCGATG GTATCCATTG CTTTTCTGCA TGCACACACA AACAAACACT 20495
.......... .......... .......... .......... .......... .......... 658
TCTAAATACA CATACTGACT TGTCGTATTG GCATGCAGTC ATGCATTGAG ACCAAATCCA 20555
.......... .......... .......... .......... .......... .......... 658
TCAGGACTGC ATCCGCACAA CACAAAATCT CACCATACAT GCATACGGTG TCTTGGATGT 20615
.......... .......... .......... .......... .......... .......... 658
TTCTGTTGTT GGGGCGCTAA TATGTACTTC TACCAAAATG CAAGGACAAA CTGTCCCAAT 20675
.......... .......... .......... .......... .......... .......... 658
TTTACAGTAA AATAACTATC ATTGTGAAAC AGACTGTCAG CATCGCTCTC TAAGCTCAGT 20735
| ||||| | || || || ||| | || || ||| ||| || || ||
.......AAT AATAA-TTTC CTT-TG-AAC A-AC---AAG --GCGC-CTC TAGTCT-AGG 700
CTGTACAGCT TTTACCAAAT AAAAATAATG CAATGGTTTT TGGAAAGAAT AAAGGTTTTA 20795
||
CT........ .......... .......... .......... .......... .......... 702
GTGGCACACT AATTTCCATA ATTTGACCCT TCATGTTTAT GCTTTCAGTT CATTGGTACT 20855
.......... .......... .......... .......... .......... .......... 702
CCACATTGGA TGGCACCAGA GGTCATTCAA GAAAGTCGTT ATGATGGAAA GGTATCATGC 20915
.......... .......... .......... .......... .......... .......... 702
TATCATCTCT ACGGTGTTCA GCTATGGAAT TGTTCATTTT AGCAGCTTTT GTGGATGTTG 20975
.......... .......... .......... .......... .......... .......... 702
CCATTTTACT CTAAAGACTT GGTGGCCGTA AATTTATGAT TGGGTTTTCA GTGAACAGGA 21035
.......... .......... .......... .......... .......... .......... 702
TTTCTTTAAT ATTTTGTTTC TTTGGGTGTG GAATGTCCTT GCATATGGCA GAACAAGGTT 21095
.......... .......... .......... .......... .......... .......... 702
ACACGTAAAT TCATAAAAGC CATTAAATAA TTGTTATGGA ACCCCTGCCA GTGCCAAAAC 21155
.......... .......... .......... .......... .......... .......... 702
ATGTTTATTT CTTTTCCTTG TCTCTTGATG GTTCCTCAAG CAAAAAAAAA ATAAAATAAA 21215
.......... .......... .......... .......... .......... .......... 702
ATCATTACCT ACTACTAAGC CTCCAAAACA AGTCTACTGG TTGCAATTAG GGATGAAAAC 21275
.......... .......... .......... .......... .......... .......... 702
GGATCGGATA CGGACGGATA TCATCGATAT CATATTTGTT TTCGTATTTC TGGTCGAATT 21335
.......... .......... .......... .......... .......... .......... 702
CGGATTCGAA TACGGATAAT GTCAACTATA TCGGATAAGA TACGATTGGA TGTCGACATC 21395
.......... .......... .......... .......... .......... .......... 702
ATAAATATAT GATTTAAGTA CTCGGATACG GATACGGTAT CGGATGTAGA ACATTCGAAC 21455
.......... .......... .......... .......... .......... .......... 702
TCGGATACGA ACTGGTCTGA ATCCCTCTAA ACGAATTCGG TCTCAAATAC GGTCGGAAAA 21515
.......... .......... .......... .......... .......... .......... 702
TATCCGTACC GTTTTCATCC CTAGTTGCAA TGTTGAGAAA ATTATTTTGG CAGCTGGAAT 21575
.......... .......... .......... .......... .......... .......... 702
TCTTCCTTTA GTTTGTCTTA CCAAAACATT TGTTCTTGTT TCCTGCACCA GGTAGATGTT 21635
|| ||
.......... .......... .......... .......... .......... .CTACAT-AA 710
TGGGCATTAG GTGTATCTGC AATTGAGATG GCAGAGGTAG ACATTGTTCC TTGCTTCTTT 21695
| | |||
TCACTAGTAG .......... .......... .......... .......... .......... 720
CTTTTTTTGA CTGTACACTT TTGTTTTTAA TTTTGTGTCG TGACAATGCT TTTTAATATT 21755
.......... .......... .......... .......... .......... .......... 720
TATTTTGTAT CTCTGACTGT AGGGCATGCC ACCAAGATCC ACTGTACATC CAATGAGAGT 21815
.......... .......... .......... .......... .......... .......... 720
AAGAGATGCT TCTCAATGCC TGTTAGTATC TGCAGTTAAT GAGGCTAATA GGTTATAACA 21875
|||| ||| || ||
.......... .......... .......... .....-TAAT CAGGTTAGTA T......... 735
GAATTAAAAA AATCTGCTCT ATCTTTGGTG CACTGTACTT TTTATCTCTT TACTGTCAAG 21935
.......... .......... .......... .......... .......... .......... 735
GGCGTCGAGG GACAGGGTAG GAGGATCCCG GCTACGTAGT TCATAGACCA ATCTGTGGTG 21995
.......... .......... .......... .......... .......... .......... 735
TGGGGCGGAG GTTTTACCCC TCAGTGCCCG ATTGTTTCAG CAAAGGTAGA TTAGGGAATT 22055
.......... .......... .......... .......... .......... .......... 735
GGGATAATTG TTCTTTCTTG ATTATCATCA TACGAGTACA AGAATATATA GGCCATTCGG 22115
.......... .......... .......... .......... .......... .......... 735
CCATAACAGC TTGGAGCCAA TTGCTCCTAA ATCTAAGGCC ATTATCGGCT CTCCTGCCTT 22175
.......... .......... .......... .......... .......... .......... 735
CTAGGCTCTC GCCTGTTCAG TGTGCTCTGC ATGCGTGGTG ACCGCGCCTA CGGTTCTGCT 22235
.......... .......... .......... .......... .......... .......... 735
GGTGCGCCAT CTGCGGCTCT GCGAGCATCC TGGGCGTGCC GTTTCCTTGT GTAGGCGCGG 22295
.......... .......... .......... .......... .......... .......... 735
TCCCACATGA CATTTACTTT CTTTCTGATG CATTTGCTTC TTTACTTTGC CTTGGTAAAT 22355
.......... .......... .......... .......... .......... .......... 735
ATTTGGTATA CATATCAATA TATTGTTTCA TCTTCGTTTA GCATGAATGC TTGATAGACC 22415
.......... .......... .......... .......... .......... .......... 735
GACTAACGAT CTCTCTTCCC CCTTCCCTTA TCTCAGGTTA TCTTCATGAT ATCCAGTGAA 22475
.......... .......... .......... .......... .......... .......... 735
CCAGCACCAA TGCTGGAGGA TAAGGAGAAA TGGTAAGTGG TTTCTAGTAA TCATGTAATT 22535
.......... .......... .......... .......... .......... .......... 735
GTTTTGCCTA TTTTGAATAG TGGACGGTCT CATCAGACCT AATATTTGCA ATATCAGATT 22595
.......... .......... .......... .......... .......... .......... 735
TTTAAGTGCC TAGACATAGG GATCTGGCTG AGGTTTCTTT TGACCTGCAA CAAAATCAAT 22655
.......... .......... .......... .......... .......... .......... 735
ATAAATACTA TAAACAACTA TTCAAACTAG AGGCACTCAT CCAAACAAAA CCATTACTGG 22715
.......... .......... .......... .......... .......... .......... 735
GATTGAAAAC TGAGGATTTA ATCAGTTAGT TGTCAGTACT ATTTTCCCAG TATACTCCTT 22775
.......... .......... .......... .......... .......... .......... 735
TCGATTTGTG TGGATTTGGG GCATATTATA GCTTGAAGAT ATAGTAAATA CTAAATAGTA 22835
.......... .......... .......... .......... .......... .......... 735
TAGAAAGTGA AAAAACTAAT GAGCAGAAAT AAATGCTGCC TTTCTATTAA TTGAGTTTTT 22895
.......... .......... .......... .......... .......... .......... 735
GTGCTATCTC CGTCCTCTTC TGATTGGCTT CTACAATCGA CCGAACCTTT TACCTATGAT 22955
.......... .......... .......... .......... .......... .......... 735
CAAAGCATTT ATGTTGCCTG CTTAAATTTA CCTTGTTGGT CTGAATTGTA TGAGAGAGTA 23015
.......... .......... .......... .......... .......... .......... 735
GCGGTACAGC TTGATGGAAG TTCCAGCTAG TTTTTCCCCC CTCCTTGGGC TATGCAGGAG 23075
|||
.......... .......... .......... .......... .......... .......GAG 738
AGCTGCATGT TACTTCATTA ATTAAGAGAG AAA 23108
|| || || | ||| | ||||| |||
-TCT--AT-A TA-ATAATTT AATAAGATCC AAA 766
********************************************************************************
EST sequence 65 +strand (File: SBtuc02-10-21.4952+)
1 CTTATGGAGA CTACACTGCT GCGGCTGTAA AGATCGCTGA GCAACATCCT GACTTTGTAA
61 TAGGATTTAT ATCAGTAAAT CCTGCATCTT GGTCACCAGC ACCGTCGAGC CCAGCGTTTA
121 TCCATGCCAC TCCTGGAGTT CAGATGGCTG CTGGAGGAGA TGGCCTTGGG CAACAATATA
181 ACACTCCCTT TTCTGTCATA AACGATAGAG GCAGTGATAT AATTATAGTC GGAAGAGGGA
241 TTATAAAGGC GAGTAACCCT GCAGAGACCG CGAGGCAGTA TCGCATCCAA GGGTGGCAGG
301 CCTATCAATC CAGTCTGTCT TGAGGAGGAT GTTTAAGCAA CTCTCCAGAA CGTAGGCGGA
361 GGACTTTCAG GCAACTGTGT TGATGTAATA ATTAGAGTAT GCCGCCCCAT CTATGCTAGA
421 ATTTGAAATA AGGGCCTGTT TAGATTGGGA ACGAAAATTT TTTGGGTGTC ACATCGGATG
481 TGTCGGAAGG ATGTCGGGAG GGGTTTTTAG AAACTAATAA AAAAACAAAT TACATAGCTC
541 GTCAGGAAAC TGCAAGACAA TTTA
Predicted gene structure (within gDNA segment 13904 to 16965):
Exon 1 14855 14879 ( 25 n); cDNA 367 389 ( 23 n); score: 0.640
Intron 1 14880 15779 ( 900 n); Pd: 0.978 (s: 0), Pa: 0.188 (s: 0.58)
Exon 2 15780 15822 ( 43 n); cDNA 390 432 ( 43 n); score: 0.581
Intron 2 15823 16505 ( 683 n); Pd: 0.000 (s: 0.58), Pa: 0.758 (s: 0.77)
Exon 3 16506 16637 ( 132 n); cDNA 433 564 ( 132 n); score: 0.879
MATCH 21326110+ SBtuc02-10-21.4952+ 0.879 200 0.355 C
PGS_21326110+_SBtuc02-10-21.4952+ (14855 14879,15780 15822,16506 16637)
Alignment (genomic DNA sequence = upper lines):
CCATGCTTAC TGATGTTGCT GCCAGGTACG CTACTCCTGT ACTGGGAGCT TGTATGTGAC 14914
|| || || || ||||| | | |
TCAGGC-AAC TG-TGTTGAT GTAAT..... .......... .......... .......... 389
TGCTTCTAAA GATGGTTCTC TGCGCATTTG GGATGGAGTA TCTGCTGAAT GTGTTCGACC 14974
.......... .......... .......... .......... .......... .......... 389
TATTATTGGA GCACATGGAT CTGCAGAAGC TACTAGCGCA ATTTTCACCA GAGATGAGAG 15034
.......... .......... .......... .......... .......... .......... 389
GTAAGCGAGC TACCAGCATG TCTAAGGTGC TCTTCCCTCA AGATAAAATC CAGTCATTGT 15094
.......... .......... .......... .......... .......... .......... 389
TTGGTTTGAA GAACAGAGAG AAAGGCATAT GCTGTATGAT TCAAGACAGT AACTACTTCA 15154
.......... .......... .......... .......... .......... .......... 389
AACCCTGTTT GGAATGTGGG AATCTTGTAG TGATTCTGAA TGATTTATAA CATGTCCTGG 15214
.......... .......... .......... .......... .......... .......... 389
ATAATTTCCT GTGTTTCAGA CGTGTCGTAA CTTTATAACA CGAATAACTC TTTCTCCTTT 15274
.......... .......... .......... .......... .......... .......... 389
ACCCTACTAT TTCACCACTA AACAACTAAC TTGCCTATAA ACACTTTTTA GACTTCTTCT 15334
.......... .......... .......... .......... .......... .......... 389
GAAAGGCCTA GTGTTTATGT GGTTATATGC AGCGTGAATG CACTTGCATA TAAGATTGAT 15394
.......... .......... .......... .......... .......... .......... 389
CTAAAAAATT GATGTAGTGA ACTTTGACTA CCCGAAGTAT ATGCTTAGAT AGTTCATGGA 15454
.......... .......... .......... .......... .......... .......... 389
TTTCTTTCAT AAAACTGCAC ACTGTATTCT GGTTATCTGT TATGAAGTTT ACTACGTTCT 15514
.......... .......... .......... .......... .......... .......... 389
TTCAGGTATG TCCTATCTTG TGGGAAAGAT TCTTGTGTCA AGTTATGGGA AGTTGGCACT 15574
.......... .......... .......... .......... .......... .......... 389
GGACGACTTG TGAAGCAATA TGCAGGAGCC ATTCGCAGAC AATTTCGTTG TCAGGTTAGT 15634
.......... .......... .......... .......... .......... .......... 389
TTCTCTGTGT TTCTATAAGA TTATTATTTT TTCCTGATTT AAATTTACTC GTGTGCCATA 15694
.......... .......... .......... .......... .......... .......... 389
TATATTATTT TTACCCAAAA TTTTAGGAAA CAAAATATTG CAATTCTTTA ATTTGAAAAT 15754
.......... .......... .......... .......... .......... .......... 389
AGGCTGGTTT GAGCTTGCAG CTTAGGATAA CAACATACCT AACCTTGCTA TGATAGACAA 15814
|| | | || || || | ||| || ||||
.......... .......... .....AATTA GAGTATGCCG CCCCAT-CTA TGCTAGAATT 423
T-AAATATGA TAATAACTGT TCTTACTATC CAGGCTGTCT TCAATGAAAC CGAAGAATTT 15873
| ||||| |
TGAAATAAG. .......... .......... .......... .......... .......... 432
GTTCTATCAG TTGATGAACA AAACAATGAG GTAAATTCCA AATTGAGAAC AGTATATATA 15933
.......... .......... .......... .......... .......... .......... 432
TTTGTATTTC AGCAAGCTTA ACTATGATAC GTCACTCTTC AGGTTGTCGT CTGGGATGCA 15993
.......... .......... .......... .......... .......... .......... 432
CTTACTGCAG AAAAGGTTGC AAGATTGCCC TCTGGCAGCA CTGGTGCTCC CAGATGGCTC 16053
.......... .......... .......... .......... .......... .......... 432
GACCACTCCC CAGTTGAACC AGTTTTTGTT ATTTGTGGAA ATGATAGATC GATCAGATTC 16113
.......... .......... .......... .......... .......... .......... 432
TGGAAACAAA CCGTATAGCT TGTAGATTCA ACCATTCAAA TCAAAAGTAT GCTTTCAGTA 16173
.......... .......... .......... .......... .......... .......... 432
TTACGTTTCA GGAGGAATGT GCTCATGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA 16233
.......... .......... .......... .......... .......... .......... 432
AGCATTTTTT TTATTGGAAA CTGCATAAGC AATTGATTGA TCTAATAGCA AACCCCAATG 16293
.......... .......... .......... .......... .......... .......... 432
ATATGTTTTT TTTTTGGCTC TGCATAGCTG ATGACAGTTG TATGAACCCT TGACCTGATT 16353
.......... .......... .......... .......... .......... .......... 432
CTTATTGGTC AGGCCCTTTT CGATGATTTG CTATTTTATC CCAATTGTGG ATTGCGGAAT 16413
.......... .......... .......... .......... .......... .......... 432
ATATTTCTTC TTCGAATGTA ATGATGGTCT CGCCCTACCA CATGTGTGAT AGCCTATAAA 16473
.......... .......... .......... .......... .......... .......... 432
AGTTCTACAA CACATTATTG CATTTCACTT AGGGCATGTT TAGATTGAAG ATGAAAATTT 16533
||| |||| ||||||| | ||||||||
.......... .......... .......... ..GGCCTGTT TAGATTGGGA ACGAAAATTT 460
TTT-AG-GTC ACATCGGATA TGTCGGAAGG ATGTCGGGAG GGGTTTTTAA AAACTAATAA 16591
||| | ||| ||||||||| |||||||||| |||||||||| ||||||||| |||||||| |
TTTGGGTGTC ACATCGGATG TGTCGGAAGG ATGTCGGGAG GGGTTTTTAG AAACTAAT-A 519
AAAAAACAAA TTACATAACT CGTCAGGAAA CTGCAAGACG AATCTA 16637
|||||||||| ||||||| || |||||||||| ||||||||| ||| ||
AAAAAACAAA TTACATAGCT CGTCAGGAAA CTGCAAGAC- AATTTA 564
********************************************************************************
EST sequence 273 -strand (File: 20553288-)
1 TCACTGTATT CAGGGCCTGT TTAGATTGGG ATCGAAAATT TTCTGCGTGT CACATCGGAT
61 ATGTCGGAAA GATGTCGGGA GGGGTTTTTA GAATCTAATA AAAAAACAAA TTACATAGCT
121 CGTCAGGAAA CTGCAAGACA AATTTATTAA GCATAATTAA TCTGTCATTA GCATATGTGG
181 GTTACTGTAG CACTTAAGGC TAATCATGGA GTAACTAGGC TTAAAAGATT CGTCTAGCGA
241 TTCTCAACTA AACTGCGTAA TCAGTTCATT TTTTTATCTA CATTTAATAT TCCATGCATG
301 TGTCCAAAGA TTCGATGAGA TGGATGAAAA ATTTTTGGAT GGGGAACTAA ACAGG
Predicted gene structure (within gDNA segment 15994 to 17139):
Exon 1 16539 16839 ( 301 n); cDNA 49 355 ( 307 n); score: 0.860
MATCH 21326110+ 20553288- 0.860 301 0.848 C
PGS_21326110+_20553288- (16539 16839)
Alignment (genomic DNA sequence = upper lines):
GTCACATCGG ATATGTCGGA AGGATGTCGG GAGGGGTTTT TAAAAACTAA TAAAAAAAAC 16598
|||||||||| |||||||||| | |||||||| |||||||||| || || |||| |||||||| |
GTCACATCGG ATATGTCGGA AAGATGTCGG GAGGGGTTTT TAGAATCTAA TAAAAAAA-C 107
AAATTACATA ACTCGTCAGG AAACTGCAAG ACGAATCTAT TAAGTATAAT TAATCTATTA 16658
|||||||||| ||||||||| |||||||||| || ||| ||| |||| ||||| |||||| | |
AAATTACATA GCTCGTCAGG AAACTGCAAG ACAAATTTAT TAAGCATAAT TAATCTGTCA 167
TTAGCACATG TGGGTTACTG TAGCACTTAA GGCTAATCAT GGACTAACTA GGCTTAAAAA 16718
|||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||
TTAGCATATG TGGGTTACTG TAGCACTTAA GGCTAATCAT GGAGTAACTA GGCTTAAAAG 227
ATTCATCTCG CGATTTTCAA CCAAACTGTG T-A--A-TT- A-TTTTTTAT CTACATTTAA 16772
|||| ||| | ||||| |||| | |||||| | | | | || | |||||||| ||||||||||
ATTCGTCTAG CGATTCTCAA CTAAACTGCG TAATCAGTTC ATTTTTTTAT CTACATTTAA 287
TGTTTTATGT ATGTGTCTAA AGATTCAATG TGATGGATGA AAATTTTTTA GGT-GGGAAC 16831
| || ||| ||||||| || |||||| ||| ||||||||| ||| ||||| | | ||||||
TATTCCATGC ATGTGTCCAA AGATTCGATG AGATGGATGA AAAATTTTTG GATGGGGAAC 347
TAAACAGG 16839
||||||||
TAAACAGG 355
********************************************************************************
EST sequence 206 -strand (File: 18388584-)
1 TTTTTTTTTT TTGAAAACTA ATTTCATAAC TCGCCTGAAG AACCGCGAGA TGAAATTATT
61 AAGCATAATT AATCCATCAT TAGTACATAT GGGTTACTGT AACACTTATG GCTAATCATG
121 GACTAGTTAG GTTCAAAAGA TTCGTCTCGT GATTTTCATA CAAACTGTGC AATTAATTTT
181 TTATTTTATA TATAGTNTAA TATTTTATAT ATATATCTAA AGATNGGAGG TGACGTTTTN
241 GGAAAAAAAA TAATTTAGGA ACTAAACAAG GCCGAAGTCG CGGCTTGGCT ACTAGCTAAA
301 TTCCATTTAA TTGGTACTCC TATAGTTGTA TGTATCTAGN GGGCACGAGC ACGAGGGGCG
361 CCTTCCTGTG GAGCCCGAGG CCGCCGGACT CCTCCATGCT CAGCTCCTCC GGCGCCATCC
421 CCACCGGCAG CGCCCAGTCG AAGCAGTGCA GCAGGTTGGC CAGCGTGAAC TCCACGTTGG
481 CGGCGGCATG GCGATGCCGG GGCAGATCCG CCGCCCGACC GAACGGCAGG AGCTCGAAGT
541 GCCGCGTGAA CTCCACCGTT CGCCTCGAAC CGTGTCGGGG TCGAACACCT CGGCTCCTCC
601 AACTCGCGGT CCTCCGGATG NCCAGCGTTC ACATCACCGG G
Predicted gene structure (within gDNA segment 15919 to 19641):
Exon 1 16581 16747 ( 167 n); cDNA 1 168 ( 168 n); score: 0.766
Intron 1 16748 17004 ( 257 n); Pd: 0.780 (s: 0.82), Pa: 0.000 (s: 0.69)
Exon 2 17005 17066 ( 62 n); cDNA 169 231 ( 63 n); score: 0.677
MATCH 21326110+ 18388584- 0.742 229 0.357 C
PGS_21326110+_18388584- (16581 16747,17005 17066)
Alignment (genomic DNA sequence = upper lines):
AAAACTAATA AAAAAAACAA ATTACATAAC TCGTCAGGA- AACTGCAAGA CGAATCTATT 16639
| | ||||| | ||| |||||| ||| | | | ||| || ||| ||| ||||
TTTTTTTTTT TTGAAAACTA ATTTCATAAC TCGCCTGAAG AACCGCGAGA TGAAATTATT 60
AAGTATAATT AATCTATTAT TAGCACATGT GGGTTACTGT AGCACTTAAG GCTAATCATG 16699
||| |||||| |||| || || ||| |||| | |||||||||| | |||||| | ||||||||||
AAGCATAATT AATCCATCAT TAGTACATAT GGGTTACTGT AACACTTATG GCTAATCATG 120
GACTAACTAG GCTTAAAAAA TTCATCTCGC GATTTTCAAC CAAACTGTGT AATTATTTTT 16759
||||| ||| | | |||| | ||| ||||| |||||||| ||||||||
GACTAGTTAG GTTCAAAAGA TTCGTCTCGT GATTTTCATA CAAACTGT.. .......... 168
TATCTACATT TAATGTTTTA TGTATGTGTC TAAAGATTCA ATGTGATGGA TGAAAATTTT 16819
.......... .......... .......... .......... .......... .......... 168
TTAGGTGGGA ACTAAACAGG GCCTTATATT TTTTAAAAAA GATGTGCAAG TGTCAGGCCT 16879
.......... .......... .......... .......... .......... .......... 168
TGTTTAGTTT CGAAAACTTT TTGGTTTTTG AGACTGTAGC ACTTTCGTTT TTATTTGACA 16939
.......... .......... .......... .......... .......... .......... 168
AATATTGTCT AATCATAGAG TAACTAGGTT TAAAAGATTT ATCTCGCGAT TTATAGGTAA 16999
.......... .......... .......... .......... .......... .......... 168
ACTGTGCAAT TAGTTTTTAT TTTTGTATAT A-TTTAATGC TTCATGCATG TGTCGTAATA 17058
||||| || ||||| |||| ||||| | | |||| || || || | || || |
.....GCAAT TAATTTTTTA TTTTATATAT AGTNTAATAT TTTATATATA TATCTAAAGA 223
TTTGATGT 17066
| || ||
TNGGAGGT 231
********************************************************************************
EST sequence 8 +strand (File: 16578696+)
1 AAGTCCGTTG CGCATGACAG GAACAGGATC AGACGGCACA ATTTCCGCCC ATTCCGTACA
61 AGCATCTTGG CAATTTGCAC ACCTTGGGTG GAGACAAGCT GCTGCAGAGC TCCCAGGCGA
121 CTGGGTTTCC ATGGCCATAG CACTCAGTGG CTCTGGTACT CTGTATATGC AAGCAACAAG
181 TGAGTTGGCG CACACGGATG CTGGTGGTAT CCGACTGGAC TCGGAGGTTC ATATTTGGGA
241 GGGATTCAAG CCGAATTTAG CACTGCCAAA TGCTGCATCA TTTCTTGTAG AGATAACATT
301 GCTGAATAAT TTTGTTGAGT TTGGCTGTGT TTAGTTCGTG TGCCCAAATA AAATTTTTGA
361 AGTATACGGA CACATTTGAA GTATTAAACG TAGACTAATA ACCAAACAGA TTACAGATTT
421 CGCCTGTAAA CTGCGAGACG AATCTATTAA GCCTAATTAA TTCGTCATTA GCAAATGTTT
481 ACTGTAGCAC CACATTGTCA AATCAAGACG TAATTAGGCT CAAAAGATTC GTCTCGCAAT
541 TTACATGCAA ACTGTGTAAT TGGTTTTTTT CGTCCATATT TAAAAAAAAA AAAAAAAA
Predicted gene structure (within gDNA segment 14152 to 17243):
Exon 1 14152 14161 ( 10 n); cDNA 310 319 ( 10 n); score: 0.600
Intron 1 14162 14351 ( 190 n); Pd: 0.890 (s: 0), Pa: 0.087 (s: 0)
Exon 2 14352 14361 ( 10 n); cDNA 320 329 ( 10 n); score: 0.800
Intron 2 14362 14527 ( 166 n); Pd: 0.000 (s: 0), Pa: 0.640 (s: 0.61)
Exon 3 14528 14568 ( 41 n); cDNA 330 367 ( 38 n); score: 0.610
Intron 3 14569 14684 ( 116 n); Pd: 0.961 (s: 0.61), Pa: 0.910 (s: 0)
Exon 4 14685 14692 ( 8 n); cDNA 368 375 ( 8 n); score: 0.750
Intron 4 14693 15883 (1191 n); Pd: 0.000 (s: 0), Pa: 0.361 (s: 0)
Exon 5 15884 15903 ( 20 n); cDNA 376 393 ( 18 n); score: 0.650
Intron 5 15904 16583 ( 680 n); Pd: 0.991 (s: 0), Pa: 0.000 (s: 0.78)
Exon 6 16584 16747 ( 164 n); cDNA 394 555 ( 162 n); score: 0.744
PPA cDNA 582 598
MATCH 21326110+ 16578696+ 0.744 253 0.423 C
PGS_21326110+_16578696+ (14152 14161,14352 14361,14528 14568,14685 14692,15884 15903,16584 16747)
Alignment (genomic DNA sequence = upper lines):
AGTTATTCAG GTTGTAAATT CTAGCAATCC AATCTCTCTA TATATCATGT AAAATGGTGT 14211
|| || ||
TTTTGTTGAG .......... .......... .......... .......... .......... 319
GTTCATTGCA TTTAACCAGG CTCATTTGTT AATGCTTGGC AGGATACTCA TAATGTTAGA 14271
.......... .......... .......... .......... .......... .......... 319
TCTGTATGTT TTCATCCTTG TGGGGATTAC CTTTTAGCAG GTACTATGAT CTTTTCACTA 14331
.......... .......... .......... .......... .......... .......... 319
AATTTAAATT TGATTTCTAG TTCTGCTGTG ATTAACTGAT TCTTGATGTC TGATATCAGT 14391
|| ||||||
.......... .......... TTTGGCTGTG .......... .......... .......... 329
TTGATATGCT CTGATTTTTA TGCATTATAA GTTGTTAACA TGTTTTCAGT TGTTATCTGT 14451
.......... .......... .......... .......... .......... .......... 329
AAAGTAATTT AATCATTTCA CCAAAACAAT TTGATATTTG GGCTTAAGAA TTTGGATTTC 14511
.......... .......... .......... .......... .......... .......... 329
GTTCCTGGAT CAACAGTTTC TGTCTCGTGG GCATTTGAAA AATACTGCAA GCATATCGTA 14571
||| || ||| || | ||| | | || || | ||| |
.......... ......TTTA GTTCGTGTGC CCAAAT-AAA ATTTTTG-AA GTATA-C... 367
TGGAATTTTC TTCTTACATA TAGTCAAATA TTAACATTCA AATATGTATT TTTTTTAAAA 14631
.......... .......... .......... .......... .......... .......... 367
AAACTCATTT TCATATATTT GGAAGCAAGT GACACTGATA AAATTATTTG CAGGGACTGA 14691
|||| |
.......... .......... .......... .......... .......... ...GGACACA 374
TCACCCAGTT GCTCATTTAT ATGATATAAA TACTTTTACA TGCTACTTAT CAGCAAATGC 14751
|
T......... .......... .......... .......... .......... .......... 375
ACAGGATTCT AGTTCTCCCA TTAACCAGGT AGCTTTTCTC TTTCCTTCTG ATTCACAAGC 14811
.......... .......... .......... .......... .......... .......... 375
ATTAGATTGC ATTGGTTATA TTCTCATCAA AGTTCTCCGC CAGCCATGCT TACTGATGTT 14871
.......... .......... .......... .......... .......... .......... 375
GCTGCCAGGT ACGCTACTCC TGTACTGGGA GCTTGTATGT GACTGCTTCT AAAGATGGTT 14931
.......... .......... .......... .......... .......... .......... 375
CTCTGCGCAT TTGGGATGGA GTATCTGCTG AATGTGTTCG ACCTATTATT GGAGCACATG 14991
.......... .......... .......... .......... .......... .......... 375
GATCTGCAGA AGCTACTAGC GCAATTTTCA CCAGAGATGA GAGGTAAGCG AGCTACCAGC 15051
.......... .......... .......... .......... .......... .......... 375
ATGTCTAAGG TGCTCTTCCC TCAAGATAAA ATCCAGTCAT TGTTTGGTTT GAAGAACAGA 15111
.......... .......... .......... .......... .......... .......... 375
GAGAAAGGCA TATGCTGTAT GATTCAAGAC AGTAACTACT TCAAACCCTG TTTGGAATGT 15171
.......... .......... .......... .......... .......... .......... 375
GGGAATCTTG TAGTGATTCT GAATGATTTA TAACATGTCC TGGATAATTT CCTGTGTTTC 15231
.......... .......... .......... .......... .......... .......... 375
AGACGTGTCG TAACTTTATA ACACGAATAA CTCTTTCTCC TTTACCCTAC TATTTCACCA 15291
.......... .......... .......... .......... .......... .......... 375
CTAAACAACT AACTTGCCTA TAAACACTTT TTAGACTTCT TCTGAAAGGC CTAGTGTTTA 15351
.......... .......... .......... .......... .......... .......... 375
TGTGGTTATA TGCAGCGTGA ATGCACTTGC ATATAAGATT GATCTAAAAA ATTGATGTAG 15411
.......... .......... .......... .......... .......... .......... 375
TGAACTTTGA CTACCCGAAG TATATGCTTA GATAGTTCAT GGATTTCTTT CATAAAACTG 15471
.......... .......... .......... .......... .......... .......... 375
CACACTGTAT TCTGGTTATC TGTTATGAAG TTTACTACGT TCTTTCAGGT ATGTCCTATC 15531
.......... .......... .......... .......... .......... .......... 375
TTGTGGGAAA GATTCTTGTG TCAAGTTATG GGAAGTTGGC ACTGGACGAC TTGTGAAGCA 15591
.......... .......... .......... .......... .......... .......... 375
ATATGCAGGA GCCATTCGCA GACAATTTCG TTGTCAGGTT AGTTTCTCTG TGTTTCTATA 15651
.......... .......... .......... .......... .......... .......... 375
AGATTATTAT TTTTTCCTGA TTTAAATTTA CTCGTGTGCC ATATATATTA TTTTTACCCA 15711
.......... .......... .......... .......... .......... .......... 375
AAATTTTAGG AAACAAAATA TTGCAATTCT TTAATTTGAA AATAGGCTGG TTTGAGCTTG 15771
.......... .......... .......... .......... .......... .......... 375
CAGCTTAGGA TAACAACATA CCTAACCTTG CTATGATAGA CAATAAATAT GATAATAACT 15831
.......... .......... .......... .......... .......... .......... 375
GTTCTTACTA TCCAGGCTGT CTTCAATGAA ACCGAAGAAT TTGTTCTATC AGTTGATGAA 15891
|||| | |
.......... .......... .......... .......... .......... ..TTGAAGTA 383
CAAAACAATG AGGTAAATTC CAAATTGAGA ACAGTATATA TATTTGTATT TCAGCAAGCT 15951
|||| | ||
TTAAAC-GT- AG........ .......... .......... .......... .......... 393
TAACTATGAT ACGTCACTCT TCAGGTTGTC GTCTGGGATG CACTTACTGC AGAAAAGGTT 16011
.......... .......... .......... .......... .......... .......... 393
GCAAGATTGC CCTCTGGCAG CACTGGTGCT CCCAGATGGC TCGACCACTC CCCAGTTGAA 16071
.......... .......... .......... .......... .......... .......... 393
CCAGTTTTTG TTATTTGTGG AAATGATAGA TCGATCAGAT TCTGGAAACA AACCGTATAG 16131
.......... .......... .......... .......... .......... .......... 393
CTTGTAGATT CAACCATTCA AATCAAAAGT ATGCTTTCAG TATTACGTTT CAGGAGGAAT 16191
.......... .......... .......... .......... .......... .......... 393
GTGCTCATGT AACTTTAGTT GTATATGGGA GAAATTTGCA TAAGCATTTT TTTTATTGGA 16251
.......... .......... .......... .......... .......... .......... 393
AACTGCATAA GCAATTGATT GATCTAATAG CAAACCCCAA TGATATGTTT TTTTTTTGGC 16311
.......... .......... .......... .......... .......... .......... 393
TCTGCATAGC TGATGACAGT TGTATGAACC CTTGACCTGA TTCTTATTGG TCAGGCCCTT 16371
.......... .......... .......... .......... .......... .......... 393
TTCGATGATT TGCTATTTTA TCCCAATTGT GGATTGCGGA ATATATTTCT TCTTCGAATG 16431
.......... .......... .......... .......... .......... .......... 393
TAATGATGGT CTCGCCCTAC CACATGTGTG ATAGCCTATA AAAGTTCTAC AACACATTAT 16491
.......... .......... .......... .......... .......... .......... 393
TGCATTTCAC TTAGGGCATG TTTAGATTGA AGATGAAAAT TTTTTAGGTC ACATCGGATA 16551
.......... .......... .......... .......... .......... .......... 393
TGTCGGAAGG ATGTCGGGAG GGGTTTTTAA AAACTAATAA AAAAAACAAA TTACATAACT 16611
|||||| | | ||||| | ||||| | |
.......... .......... .......... ..ACTAAT-A ACCAAACAGA TTACAGATTT 420
CGTCAGGAAA CTGCAAGACG AATCTATTAA GTATAATTAA TCTATTATTA GCACATGTGG 16671
|| | | ||| |||| ||||| |||||||||| | ||||||| | | |||| ||| ||||
CGCCTGTAAA CTGCGAGACG AATCTATTAA GCCTAATTAA TTCGTCATTA GCAAATGT-- 478
GTTACTGTAG CAC-TTA-AG GCTAATCATG GACTAACTAG GCTTAAAAAA TTCATCTCGC 16729
||||||||| ||| | | | ||||| | ||| ||| ||| |||| | ||| ||||||
-TTACTGTAG CACCACATTG TCAAATCAAG ACGTAATTAG GCTCAAAAGA TTCGTCTCGC 537
GATTTTCAAC CAAACTGT 16747
|||| || ||||||||
AATTTACATG CAAACTGT 555
********************************************************************************
EST sequence 253 -strand (File: SBtuc02-10-21.6421-)
1 TGCTTCATAA AATACTAAAG AGGTATGAAG TATACAATAT ACGGGCATAA TAAAGCATTG
61 AGAATAAAAG AATGAATTGA ATAGAATATT GTGGGTTCGT AATAAAAGGC AAGGAGTAAA
121 CCTAAAATAT GTTGAAGTTG AGAGTATAAG CATTGAACAG CCGCCAGTTA ATTTGTAAAC
181 CGAATTAATT TGTTTGCAAA AGTTCAGACT TAAAATACTA GGGCATTTCA GTTGACTATC
241 CCTTCTAGGA GATCTGCAAT TTTAGAAGAC TTGTGCCATG AAACCTTGAA GTTCAATTAT
301 TAGTTAGTAG GAATGTGGAT TCCAGTATGA AGATAATAAG GAAAGAAAAG ACAAAGAAAC
361 CCAAAAAAAA CAAGTGAACT GTATGTTGTA TAGTTATCAA TTTATCATTA CCAGATAAGA
421 AAGGAACACC AGGTGTCAGC TCCCCAGAAA TCTGTAAGCT AATCAACAAT GCTGTGTGAC
481 GACATTTCTT TTACCATCCA ACCATTTGCA TAAGAGCTCT CAACTAAAGG TAGACGTAAA
541 TTTACACTAA CAACTGACAA GCTAAGGCCG TGTTTAGTTG GTGAAGAGAA AATTTTCGTG
601 ACACTGTAGC ACTTTCGTTT GTTTATGGTA ATTATTGTCC AACTATGGAC TAACTAGGCT
661 CAAAAGATTT GTCTCGTACA TTTCGACTAA ACTGTGCAAT TAGTTTTTAT TTTCATCTAT
721 ATTTAATACT CCATGTATGC GTCTAAAGAT TCGATGTGAC TGGGAATCTT GAAAAAATTT
781 AGGTTTTGGG GTGGAAGTAA ACAAAGCCTA AGTCCAGACA GC
Predicted gene structure (within gDNA segment 13360 to 17867):
Exon 1 14745 14779 ( 35 n); cDNA 437 470 ( 34 n); score: 0.571
Intron 1 14780 15846 (1067 n); Pd: 0.995 (s: 0), Pa: 0.995 (s: 0)
Exon 2 15847 15851 ( 5 n); cDNA 471 475 ( 5 n); score: 1.000
Intron 2 15852 16320 ( 469 n); Pd: 0.000 (s: 0), Pa: 0.818 (s: 0.47)
Exon 3 16321 16360 ( 40 n); cDNA 476 516 ( 41 n); score: 0.475
Intron 3 16361 16823 ( 463 n); Pd: 0.466 (s: 0.47), Pa: 0.908 (s: 0.52)
Exon 4 16824 17100 ( 277 n); cDNA 517 791 ( 275 n); score: 0.700
MATCH 21326110+ SBtuc02-10-21.6421- 0.700 357 0.434 C
PGS_21326110+_SBtuc02-10-21.6421- (14745 14779,15847 15851,16321 16360,16824 17100)
Alignment (genomic DNA sequence = upper lines):
CAAATGCACA GGATTCTAGT TCTCCCATTA ACCAGGTAGC TTTTCTCTTT CCTTCTGATT 14804
|| | | || | | ||| || | || | || |
CAGCTCCCCA GAAATCT-GT AAGCTAATCA ACAAT..... .......... .......... 470
CACAAGCATT AGATTGCATT GGTTATATTC TCATCAAAGT TCTCCGCCAG CCATGCTTAC 14864
.......... .......... .......... .......... .......... .......... 470
TGATGTTGCT GCCAGGTACG CTACTCCTGT ACTGGGAGCT TGTATGTGAC TGCTTCTAAA 14924
.......... .......... .......... .......... .......... .......... 470
GATGGTTCTC TGCGCATTTG GGATGGAGTA TCTGCTGAAT GTGTTCGACC TATTATTGGA 14984
.......... .......... .......... .......... .......... .......... 470
GCACATGGAT CTGCAGAAGC TACTAGCGCA ATTTTCACCA GAGATGAGAG GTAAGCGAGC 15044
.......... .......... .......... .......... .......... .......... 470
TACCAGCATG TCTAAGGTGC TCTTCCCTCA AGATAAAATC CAGTCATTGT TTGGTTTGAA 15104
.......... .......... .......... .......... .......... .......... 470
GAACAGAGAG AAAGGCATAT GCTGTATGAT TCAAGACAGT AACTACTTCA AACCCTGTTT 15164
.......... .......... .......... .......... .......... .......... 470
GGAATGTGGG AATCTTGTAG TGATTCTGAA TGATTTATAA CATGTCCTGG ATAATTTCCT 15224
.......... .......... .......... .......... .......... .......... 470
GTGTTTCAGA CGTGTCGTAA CTTTATAACA CGAATAACTC TTTCTCCTTT ACCCTACTAT 15284
.......... .......... .......... .......... .......... .......... 470
TTCACCACTA AACAACTAAC TTGCCTATAA ACACTTTTTA GACTTCTTCT GAAAGGCCTA 15344
.......... .......... .......... .......... .......... .......... 470
GTGTTTATGT GGTTATATGC AGCGTGAATG CACTTGCATA TAAGATTGAT CTAAAAAATT 15404
.......... .......... .......... .......... .......... .......... 470
GATGTAGTGA ACTTTGACTA CCCGAAGTAT ATGCTTAGAT AGTTCATGGA TTTCTTTCAT 15464
.......... .......... .......... .......... .......... .......... 470
AAAACTGCAC ACTGTATTCT GGTTATCTGT TATGAAGTTT ACTACGTTCT TTCAGGTATG 15524
.......... .......... .......... .......... .......... .......... 470
TCCTATCTTG TGGGAAAGAT TCTTGTGTCA AGTTATGGGA AGTTGGCACT GGACGACTTG 15584
.......... .......... .......... .......... .......... .......... 470
TGAAGCAATA TGCAGGAGCC ATTCGCAGAC AATTTCGTTG TCAGGTTAGT TTCTCTGTGT 15644
.......... .......... .......... .......... .......... .......... 470
TTCTATAAGA TTATTATTTT TTCCTGATTT AAATTTACTC GTGTGCCATA TATATTATTT 15704
.......... .......... .......... .......... .......... .......... 470
TTACCCAAAA TTTTAGGAAA CAAAATATTG CAATTCTTTA ATTTGAAAAT AGGCTGGTTT 15764
.......... .......... .......... .......... .......... .......... 470
GAGCTTGCAG CTTAGGATAA CAACATACCT AACCTTGCTA TGATAGACAA TAAATATGAT 15824
.......... .......... .......... .......... .......... .......... 470
AATAACTGTT CTTACTATCC AGGCTGTCTT CAATGAAACC GAAGAATTTG TTCTATCAGT 15884
|||||
.......... .......... ..GCTGT... .......... .......... .......... 475
TGATGAACAA AACAATGAGG TAAATTCCAA ATTGAGAACA GTATATATAT TTGTATTTCA 15944
.......... .......... .......... .......... .......... .......... 475
GCAAGCTTAA CTATGATACG TCACTCTTCA GGTTGTCGTC TGGGATGCAC TTACTGCAGA 16004
.......... .......... .......... .......... .......... .......... 475
AAAGGTTGCA AGATTGCCCT CTGGCAGCAC TGGTGCTCCC AGATGGCTCG ACCACTCCCC 16064
.......... .......... .......... .......... .......... .......... 475
AGTTGAACCA GTTTTTGTTA TTTGTGGAAA TGATAGATCG ATCAGATTCT GGAAACAAAC 16124
.......... .......... .......... .......... .......... .......... 475
CGTATAGCTT GTAGATTCAA CCATTCAAAT CAAAAGTATG CTTTCAGTAT TACGTTTCAG 16184
.......... .......... .......... .......... .......... .......... 475
GAGGAATGTG CTCATGTAAC TTTAGTTGTA TATGGGAGAA ATTTGCATAA GCATTTTTTT 16244
.......... .......... .......... .......... .......... .......... 475
TATTGGAAAC TGCATAAGCA ATTGATTGAT CTAATAGCAA ACCCCAATGA TATGTTTTTT 16304
.......... .......... .......... .......... .......... .......... 475
TTTTGGCTCT GCATAGCTGA TGACAGTTGT ATGAACCCTT GACCTGATTC -TTATTGGTC 16363
||| |||| || | | | | ||| | | | | |
.......... ......GTGA CGACATTTCT TTTACCATCC AACCATTTGC ATAAGAG... 516
AGGCCCTTTT CGATGATTTG CTATTTTATC CCAATTGTGG ATTGCGGAAT ATATTTCTTC 16423
.......... .......... .......... .......... .......... .......... 516
TTCGAATGTA ATGATGGTCT CGCCCTACCA CATGTGTGAT AGCCTATAAA AGTTCTACAA 16483
.......... .......... .......... .......... .......... .......... 516
CACATTATTG CATTTCACTT AGGGCATGTT TAGATTGAAG ATGAAAATTT TTTAGGTCAC 16543
.......... .......... .......... .......... .......... .......... 516
ATCGGATATG TCGGAAGGAT GTCGGGAGGG GTTTTTAAAA ACTAATAAAA AAAACAAATT 16603
.......... .......... .......... .......... .......... .......... 516
ACATAACTCG TCAGGAAACT GCAAGACGAA TCTATTAAGT ATAATTAATC TATTATTAGC 16663
.......... .......... .......... .......... .......... .......... 516
ACATGTGGGT TACTGTAGCA CTTAAGGCTA ATCATGGACT AACTAGGCTT AAAAAATTCA 16723
.......... .......... .......... .......... .......... .......... 516
TCTCGCGATT TTCAACCAAA CTGTGTAATT ATTTTTTATC TACATTTAAT GTTTTATGTA 16783
.......... .......... .......... .......... .......... .......... 516
TGTGTCTAAA GATTCAATGT GATGGATGAA AATTTTTTAG GTGGGAACTA AACAGGGCCT 16843
| ||||| || | |
.......... .......... .......... .......... CTCTCAACTA AAGGTAGACG 536
TATATTTTTT AAAAAAGATG TGCAAGTGTC AGGCCTTGTT TAGTT-TCGA AAACTTTTTG 16902
|| |||| || | || |||| | ||||| |||| ||||| || | | |
TAAATTTACA CTAACAACTG -ACAAG-CTA AGGCCGTGTT TAGTTGGTGA AGAGAAAAT- 593
GTTTTTGAGA CTGTAGCACT TTCGTTTTTA TTTGACAAAT ATTGTCTAAT CATAGAGTAA 16962
|| ||| | |||||||||| ||||||| | | || || | |||||| || || || |||
TTTCGTGACA CTGTAGCACT TTCGTTTGTT TATGGTAATT ATTGTCCAAC TATGGACTAA 653
CTAGGTTTAA AAGATTTATC TCG-CGATTT ATAGGTAAAC TGTGCAATTA GTTTTTATTT 17021
||||| | || ||||||| || ||| |||| | ||||| |||||||||| ||||||||||
CTAGGCTCAA AAGATTTGTC TCGTACATTT CGA-CTAAAC TGTGCAATTA GTTTTTATTT 712
TTGTATATAT TTAATGCTTC ATGCATGTGT CGTAATATTT GATGTGTTGA GAAATTTTGA 17081
| | ||||| ||||| || | ||| ||| || | || ||| |||||| | ||| ||||
TCATCTATAT TTAATACTCC ATGTATGCGT CTAAAGATTC GATGTGACTG GGAATCTTGA 772
AAAGTTTTTG GTTTTTGGG 17100
||| ||| | ||||| |||
AAAAATTTAG GTTTTGGGG 791
********************************************************************************
EST sequence 45 +strand (File: SBtuc02-10-21.2648+)
1 CGTCTCCTCC GACGCGGCGG CGCTGCTCTG CCCCTACTCC GACGTGCCCG GCTTCATGGC
61 CACCATGTCC CTCGCCATCA GCAAGCTCGC CTCCCTCGAA GCCTTCGTCA GACAAGCGGA
121 CGCGCTTAGG CTGCAGGCGC TGCACCGGCT GCCGCAGATC CTGACGGCGC GGCAGTCGGC
181 GCGGTGCTTC CTCGCCATCG CCGACTACTC CCACCGCCTC CGTGCGCTCA GCGAACTCTG
241 GCACACCCGG CCAGGCCAAG ATCCAGCGGC GAGCAACCTG GCGGCCGGGC CCAGCAGCCA
301 GAGACCGCCC TACCAAAGTA GGGACGGTTT ACTATAGACA TATAATAGTC TGGGATAGTT
361 TCAGAGATAC ATATACAGTT GATCACTGAT CAGTAGTAAT TCAGATAGAC CCATTCCTCG
421 CTTATTTATG AAGGGTAATA CTAAGGCCTT GTTTAGTTTG TAAAATTTTT GGGTTTTGGC
481 TACTGTAGCA CTTTCGTTTT TATTTGACAA ACATTGTCCA ATCATGGAGT AACTAGACTC
541 AAAAGATTCA TCTCATAAAT TACAGGTAAA CTGTGT
Predicted gene structure (within gDNA segment 14359 to 17315):
Exon 1 14685 14694 ( 10 n); cDNA 383 392 ( 10 n); score: 0.800
Intron 1 14695 16823 (2129 n); Pd: 0.000 (s: 0), Pa: 0.908 (s: 0.47)
Exon 2 16824 17006 ( 183 n); cDNA 393 576 ( 184 n); score: 0.743
MATCH 21326110+ SBtuc02-10-21.2648+ 0.743 193 0.335 C
PGS_21326110+_SBtuc02-10-21.2648+ (14685 14694,16824 17006)
Alignment (genomic DNA sequence = upper lines):
GGACTGATCA CCCAGTTGCT CATTTATATG ATATAAATAC TTTTACATGC TACTTATCAG 14744
||||||||
TCACTGATCA .......... .......... .......... .......... .......... 392
CAAATGCACA GGATTCTAGT TCTCCCATTA ACCAGGTAGC TTTTCTCTTT CCTTCTGATT 14804
.......... .......... .......... .......... .......... .......... 392
CACAAGCATT AGATTGCATT GGTTATATTC TCATCAAAGT TCTCCGCCAG CCATGCTTAC 14864
.......... .......... .......... .......... .......... .......... 392
TGATGTTGCT GCCAGGTACG CTACTCCTGT ACTGGGAGCT TGTATGTGAC TGCTTCTAAA 14924
.......... .......... .......... .......... .......... .......... 392
GATGGTTCTC TGCGCATTTG GGATGGAGTA TCTGCTGAAT GTGTTCGACC TATTATTGGA 14984
.......... .......... .......... .......... .......... .......... 392
GCACATGGAT CTGCAGAAGC TACTAGCGCA ATTTTCACCA GAGATGAGAG GTAAGCGAGC 15044
.......... .......... .......... .......... .......... .......... 392
TACCAGCATG TCTAAGGTGC TCTTCCCTCA AGATAAAATC CAGTCATTGT TTGGTTTGAA 15104
.......... .......... .......... .......... .......... .......... 392
GAACAGAGAG AAAGGCATAT GCTGTATGAT TCAAGACAGT AACTACTTCA AACCCTGTTT 15164
.......... .......... .......... .......... .......... .......... 392
GGAATGTGGG AATCTTGTAG TGATTCTGAA TGATTTATAA CATGTCCTGG ATAATTTCCT 15224
.......... .......... .......... .......... .......... .......... 392
GTGTTTCAGA CGTGTCGTAA CTTTATAACA CGAATAACTC TTTCTCCTTT ACCCTACTAT 15284
.......... .......... .......... .......... .......... .......... 392
TTCACCACTA AACAACTAAC TTGCCTATAA ACACTTTTTA GACTTCTTCT GAAAGGCCTA 15344
.......... .......... .......... .......... .......... .......... 392
GTGTTTATGT GGTTATATGC AGCGTGAATG CACTTGCATA TAAGATTGAT CTAAAAAATT 15404
.......... .......... .......... .......... .......... .......... 392
GATGTAGTGA ACTTTGACTA CCCGAAGTAT ATGCTTAGAT AGTTCATGGA TTTCTTTCAT 15464
.......... .......... .......... .......... .......... .......... 392
AAAACTGCAC ACTGTATTCT GGTTATCTGT TATGAAGTTT ACTACGTTCT TTCAGGTATG 15524
.......... .......... .......... .......... .......... .......... 392
TCCTATCTTG TGGGAAAGAT TCTTGTGTCA AGTTATGGGA AGTTGGCACT GGACGACTTG 15584
.......... .......... .......... .......... .......... .......... 392
TGAAGCAATA TGCAGGAGCC ATTCGCAGAC AATTTCGTTG TCAGGTTAGT TTCTCTGTGT 15644
.......... .......... .......... .......... .......... .......... 392
TTCTATAAGA TTATTATTTT TTCCTGATTT AAATTTACTC GTGTGCCATA TATATTATTT 15704
.......... .......... .......... .......... .......... .......... 392
TTACCCAAAA TTTTAGGAAA CAAAATATTG CAATTCTTTA ATTTGAAAAT AGGCTGGTTT 15764
.......... .......... .......... .......... .......... .......... 392
GAGCTTGCAG CTTAGGATAA CAACATACCT AACCTTGCTA TGATAGACAA TAAATATGAT 15824
.......... .......... .......... .......... .......... .......... 392
AATAACTGTT CTTACTATCC AGGCTGTCTT CAATGAAACC GAAGAATTTG TTCTATCAGT 15884
.......... .......... .......... .......... .......... .......... 392
TGATGAACAA AACAATGAGG TAAATTCCAA ATTGAGAACA GTATATATAT TTGTATTTCA 15944
.......... .......... .......... .......... .......... .......... 392
GCAAGCTTAA CTATGATACG TCACTCTTCA GGTTGTCGTC TGGGATGCAC TTACTGCAGA 16004
.......... .......... .......... .......... .......... .......... 392
AAAGGTTGCA AGATTGCCCT CTGGCAGCAC TGGTGCTCCC AGATGGCTCG ACCACTCCCC 16064
.......... .......... .......... .......... .......... .......... 392
AGTTGAACCA GTTTTTGTTA TTTGTGGAAA TGATAGATCG ATCAGATTCT GGAAACAAAC 16124
.......... .......... .......... .......... .......... .......... 392
CGTATAGCTT GTAGATTCAA CCATTCAAAT CAAAAGTATG CTTTCAGTAT TACGTTTCAG 16184
.......... .......... .......... .......... .......... .......... 392
GAGGAATGTG CTCATGTAAC TTTAGTTGTA TATGGGAGAA ATTTGCATAA GCATTTTTTT 16244
.......... .......... .......... .......... .......... .......... 392
TATTGGAAAC TGCATAAGCA ATTGATTGAT CTAATAGCAA ACCCCAATGA TATGTTTTTT 16304
.......... .......... .......... .......... .......... .......... 392
TTTTGGCTCT GCATAGCTGA TGACAGTTGT ATGAACCCTT GACCTGATTC TTATTGGTCA 16364
.......... .......... .......... .......... .......... .......... 392
GGCCCTTTTC GATGATTTGC TATTTTATCC CAATTGTGGA TTGCGGAATA TATTTCTTCT 16424
.......... .......... .......... .......... .......... .......... 392
TCGAATGTAA TGATGGTCTC GCCCTACCAC ATGTGTGATA GCCTATAAAA GTTCTACAAC 16484
.......... .......... .......... .......... .......... .......... 392
ACATTATTGC ATTTCACTTA GGGCATGTTT AGATTGAAGA TGAAAATTTT TTAGGTCACA 16544
.......... .......... .......... .......... .......... .......... 392
TCGGATATGT CGGAAGGATG TCGGGAGGGG TTTTTAAAAA CTAATAAAAA AAACAAATTA 16604
.......... .......... .......... .......... .......... .......... 392
CATAACTCGT CAGGAAACTG CAAGACGAAT CTATTAAGTA TAATTAATCT ATTATTAGCA 16664
.......... .......... .......... .......... .......... .......... 392
CATGTGGGTT ACTGTAGCAC TTAAGGCTAA TCATGGACTA ACTAGGCTTA AAAAATTCAT 16724
.......... .......... .......... .......... .......... .......... 392
CTCGCGATTT TCAACCAAAC TGTGTAATTA TTTTTTATCT ACATTTAATG TTTTATGTAT 16784
.......... .......... .......... .......... .......... .......... 392
GTGTCTAAAG ATTCAATGTG ATGGATGAAA ATTTTTTAGG TGGGAACT-A AACAGGGCCT 16843
| | | || | | | || ||
.......... .......... .......... .........G TAGTAATTCA GATAGACCCA 413
TATATTTTTT AAAAAAGATG TGCAAGTGTC AGGCCTTGTT TAGTTTCGAA AACTTTTTGG 16903
| | || | | || | | || | |||||||||| |||||| || || |||| ||
TTCCTCGCTT ATTTATGAAG GGTAATACTA AGGCCTTGTT TAGTTTGTAA AATTTTTGGG 473
TTTTTGAGAC TGTAGCACTT TCGTTTTTAT TTGACAAATA TTGTCTAATC ATAGAGTAAC 16963
|||| | || |||||||||| |||||||||| |||||||| | ||||| |||| || |||||||
TTTTGGCTAC TGTAGCACTT TCGTTTTTAT TTGACAAACA TTGTCCAATC ATGGAGTAAC 533
TAGGTTTAAA AGATTTATCT CGCGATTTAT AGGTAAACTG TGC 17006
||| | ||| ||||| |||| | | ||| |||||||||| ||
TAGACTCAAA AGATTCATCT CATAAATTAC AGGTAAACTG TGT 576
********************************************************************************
EST sequence 61 +strand (File: 18052346+)
1 GCCACCTGCA TCGCTCCCAC CGGAGCCATA GCCGCGGCAG CCGCAGCCCG AGCCCGTACC
61 GCCGCCACGG TAGCTCGTCC AGGTCCAGGG ACCGTGACGA TGACCATGAC TATTACTACC
121 ACTACCGTAG CGGTAGTGGC AGCCGCAGGA GCAGCGAGAG ACACCGCAGC CACGACAGCG
181 ACGGGAGCCG CCGTCGGCGC GGGCGATCCA GGAGCCGGAG CAAGAGCCCG TGGAGGGAAG
241 GCAGCGAGGA GCGGAGGGCA AAGATTGAGC AGTGGAACCG CGAGCGGGAG GCAGCGCAGG
301 TGTAGGCAGG TTCCCCTGTG ACTCTGCCGG CTGCAGCCTG CAGGTTGCTG CAGTACTGTT
361 GGCATTGCTA GTCTGACAGG CTGCTGAAGC TGTCATCATG TATTTTAGTT ATGTATTGTA
421 GTTTTAGGCC TTGTTTAGTT CGTAAAATTT TTTGTTTTTG GCTACTGTAG CATTTCGTTT
481 TTATTTGACA AACATTGTCC AATCATGGAG TAACTAGGCT TAA
Predicted gene structure (within gDNA segment 14449 to 17401):
Exon 1 14844 14879 ( 36 n); cDNA 320 353 ( 34 n); score: 0.639
Intron 1 14880 15233 ( 354 n); Pd: 0.978 (s: 0), Pa: 0.765 (s: 0)
Exon 2 15234 15240 ( 7 n); cDNA 354 360 ( 7 n); score: 0.429
Intron 2 15241 16505 (1265 n); Pd: 0.243 (s: 0), Pa: 0.758 (s: 0)
Exon 3 16506 16521 ( 16 n); cDNA 361 376 ( 16 n); score: 0.688
Intron 3 16522 16823 ( 302 n); Pd: 0.000 (s: 0), Pa: 0.908 (s: 0.50)
Exon 4 16824 16972 ( 149 n); cDNA 377 523 ( 147 n); score: 0.745
MATCH 21326110+ 18052346+ 0.745 208 0.398 C
PGS_21326110+_18052346+ (14844 14879,15234 15240,16506 16521,16824 16972)
Alignment (genomic DNA sequence = upper lines):
TTCTCCGCCA GCCATGCTTA CTG-ATGTTG CTGCCAGGTA CGCTACTCCT GTACTGGGAG 14902
||| ||| || ||| ||| | |||| ||| |||
GACTCTGCCG GC--TGCAGC CTGCAGGTTG CTG-CAG... .......... .......... 353
CTTGTATGTG ACTGCTTCTA AAGATGGTTC TCTGCGCATT TGGGATGGAG TATCTGCTGA 14962
.......... .......... .......... .......... .......... .......... 353
ATGTGTTCGA CCTATTATTG GAGCACATGG ATCTGCAGAA GCTACTAGCG CAATTTTCAC 15022
.......... .......... .......... .......... .......... .......... 353
CAGAGATGAG AGGTAAGCGA GCTACCAGCA TGTCTAAGGT GCTCTTCCCT CAAGATAAAA 15082
.......... .......... .......... .......... .......... .......... 353
TCCAGTCATT GTTTGGTTTG AAGAACAGAG AGAAAGGCAT ATGCTGTATG ATTCAAGACA 15142
.......... .......... .......... .......... .......... .......... 353
GTAACTACTT CAAACCCTGT TTGGAATGTG GGAATCTTGT AGTGATTCTG AATGATTTAT 15202
.......... .......... .......... .......... .......... .......... 353
AACATGTCCT GGATAATTTC CTGTGTTTCA GACGTGTCGT AACTTTATAA CACGAATAAC 15262
|||
.......... .......... .......... .TACTGTT.. .......... .......... 360
TCTTTCTCCT TTACCCTACT ATTTCACCAC TAAACAACTA ACTTGCCTAT AAACACTTTT 15322
.......... .......... .......... .......... .......... .......... 360
TAGACTTCTT CTGAAAGGCC TAGTGTTTAT GTGGTTATAT GCAGCGTGAA TGCACTTGCA 15382
.......... .......... .......... .......... .......... .......... 360
TATAAGATTG ATCTAAAAAA TTGATGTAGT GAACTTTGAC TACCCGAAGT ATATGCTTAG 15442
.......... .......... .......... .......... .......... .......... 360
ATAGTTCATG GATTTCTTTC ATAAAACTGC ACACTGTATT CTGGTTATCT GTTATGAAGT 15502
.......... .......... .......... .......... .......... .......... 360
TTACTACGTT CTTTCAGGTA TGTCCTATCT TGTGGGAAAG ATTCTTGTGT CAAGTTATGG 15562
.......... .......... .......... .......... .......... .......... 360
GAAGTTGGCA CTGGACGACT TGTGAAGCAA TATGCAGGAG CCATTCGCAG ACAATTTCGT 15622
.......... .......... .......... .......... .......... .......... 360
TGTCAGGTTA GTTTCTCTGT GTTTCTATAA GATTATTATT TTTTCCTGAT TTAAATTTAC 15682
.......... .......... .......... .......... .......... .......... 360
TCGTGTGCCA TATATATTAT TTTTACCCAA AATTTTAGGA AACAAAATAT TGCAATTCTT 15742
.......... .......... .......... .......... .......... .......... 360
TAATTTGAAA ATAGGCTGGT TTGAGCTTGC AGCTTAGGAT AACAACATAC CTAACCTTGC 15802
.......... .......... .......... .......... .......... .......... 360
TATGATAGAC AATAAATATG ATAATAACTG TTCTTACTAT CCAGGCTGTC TTCAATGAAA 15862
.......... .......... .......... .......... .......... .......... 360
CCGAAGAATT TGTTCTATCA GTTGATGAAC AAAACAATGA GGTAAATTCC AAATTGAGAA 15922
.......... .......... .......... .......... .......... .......... 360
CAGTATATAT ATTTGTATTT CAGCAAGCTT AACTATGATA CGTCACTCTT CAGGTTGTCG 15982
.......... .......... .......... .......... .......... .......... 360
TCTGGGATGC ACTTACTGCA GAAAAGGTTG CAAGATTGCC CTCTGGCAGC ACTGGTGCTC 16042
.......... .......... .......... .......... .......... .......... 360
CCAGATGGCT CGACCACTCC CCAGTTGAAC CAGTTTTTGT TATTTGTGGA AATGATAGAT 16102
.......... .......... .......... .......... .......... .......... 360
CGATCAGATT CTGGAAACAA ACCGTATAGC TTGTAGATTC AACCATTCAA ATCAAAAGTA 16162
.......... .......... .......... .......... .......... .......... 360
TGCTTTCAGT ATTACGTTTC AGGAGGAATG TGCTCATGTA ACTTTAGTTG TATATGGGAG 16222
.......... .......... .......... .......... .......... .......... 360
AAATTTGCAT AAGCATTTTT TTTATTGGAA ACTGCATAAG CAATTGATTG ATCTAATAGC 16282
.......... .......... .......... .......... .......... .......... 360
AAACCCCAAT GATATGTTTT TTTTTTGGCT CTGCATAGCT GATGACAGTT GTATGAACCC 16342
.......... .......... .......... .......... .......... .......... 360
TTGACCTGAT TCTTATTGGT CAGGCCCTTT TCGATGATTT GCTATTTTAT CCCAATTGTG 16402
.......... .......... .......... .......... .......... .......... 360
GATTGCGGAA TATATTTCTT CTTCGAATGT AATGATGGTC TCGCCCTACC ACATGTGTGA 16462
.......... .......... .......... .......... .......... .......... 360
TAGCCTATAA AAGTTCTACA ACACATTATT GCATTTCACT TAGGGCATGT TTAGATTGAA 16522
||||| ||| |||
.......... .......... .......... .......... ...GGCATTG CTAGTCTGA. 376
GATGAAAATT TTTTAGGTCA CATCGGATAT GTCGGAAGGA TGTCGGGAGG GGTTTTTAAA 16582
.......... .......... .......... .......... .......... .......... 376
AACTAATAAA AAAAACAAAT TACATAACTC GTCAGGAAAC TGCAAGACGA ATCTATTAAG 16642
.......... .......... .......... .......... .......... .......... 376
TATAATTAAT CTATTATTAG CACATGTGGG TTACTGTAGC ACTTAAGGCT AATCATGGAC 16702
.......... .......... .......... .......... .......... .......... 376
TAACTAGGCT TAAAAAATTC ATCTCGCGAT TTTCAACCAA ACTGTGTAAT TATTTTTTAT 16762
.......... .......... .......... .......... .......... .......... 376
CTACATTTAA TGTTTTATGT ATGTGTCTAA AGATTCAATG TGATGGATGA AAATTTTTTA 16822
.......... .......... .......... .......... .......... .......... 376
GGTGGGAACT AAACAGGGCC TTATATTTTT TAAAAAAGAT GTGCAAGTGT CAGGCCTTGT 16882
|| || || | | | || | ||| || | | | | ||| | |||||||||
.CAGGCTGCT GAAGCTGTCA TCATGTATTT TAGTTATG-T ATTGTAGTTT TAGGCCTTGT 434
TTAGTTTCGA AAACTTTTTG GTTTTTGAGA CTGTAGCACT TTCGTTTTTA TTTGACAAAT 16942
|||||| | ||| |||||| |||| | | |||||||| | |||||||||| |||||||||
TTAGTTCGTA AAATTTTTTG TTTTTGGCTA CTGTAGCA-T TTCGTTTTTA TTTGACAAAC 493
ATTGTCTAAT CATAGAGTAA CTAGGTTTAA 16972
|||||| ||| ||| |||||| ||||| ||||
ATTGTCCAAT CATGGAGTAA CTAGGCTTAA 523
********************************************************************************
EST sequence 42 +strand (File: SBtuc02-10-21.2146+)
1 GGCCACGCGA CGCCGCTGGC GGGCGTGAGC ATCGCGGCGG TGCTCACGTT CGTGGCGTCC
61 TTCTCCGTCG GCATGGGCCC CATCGCGTGG GTGTACAGCT CGGAGATCTT CCCGCTGCGG
121 CTCCGCGCGC AGGGCTGCGC GCTCGGCACG GCGATGAACC GGATCATGAG CGGCGCCATC
181 ACCATGTCCT TCATCTCGCT CTACAAGGCC ATCACCTTGG CCGGGAGCTT CTACTTGTAT
241 GCAGGTATCG CTGCTGCCGG GTGGCTGTTC ATGTTCTTCT TCCTGCCGGA GACGAGGGGC
301 AGGAGCCTGG AGGACACCGA GAAGCTCTTC GGCGGTGGGG ACGACGGCGA GGACAACAAG
361 GAAGATGGAC ACGATGTGCA CAAGAAGTCC ACTGAGTTGA GTAGCAAGCA AACAGTGACC
421 TGATCTGCAC GTGCTAGTAC GTACGCTAGT CAATAACACG AACGGATGTG GTCGGATTTT
481 TCAATTCGCA GCGGAACGCG CGGCAAAGCT GCGCGAACTG AACCCGTGTT CAACATGACA
541 TGTCCTTTGT AGAAATCATG GTCACAGCTC AAGGGGAGTA GCGTAAATAC TAGGCAAGGT
601 TATGTTTCGC ACTAGGGTGG GTCTCCTCCT CTTTGGCAAA TGCTTTGTTT GTTGCTAAGT
661 GTGGGTTGGC CCACTTGCAG TTTAGCGAAT GATTTGTTGT CATGTGCTTT CGTAGTGGAT
721 TATTTGCCGT TACTGTGATG TGTTTCGTCT TAGGCCTTGT TTAGTTCCGA AAAGTGAAAA
781 GTTTTCGGTG CTGTAGCACT TTCGTTTGTT TGTGATAAAT ATTATCCAAT CATGGACTAA
841 CTAGGATCAA AAGATTCGTC TCGTGATTTA CAACTAAACC GTGTAATTAG TTTTTGTTTT
901 CGTCCATATT TACTGTTTCA TGCATGTGCC ACAAGATTCG ATATGACGGG GAATCTTGAA
961 AACTTTTTTG TTTTCAGGGT GAACTAAACA AGGCCATAAT CATGCATCTG TAATATGATT
1021 TTGTCTAGAT TTTACTTGCT TGCATAGAGA AATAAAGGAC GCCCAAAATC TATTGATCAC
1081 AAACAGCAAG CTTGCTATTC ATGGAAACTG CGCATAGTCC CTAAGCAATT GAAATGGCTA
1141 TGCTGGTTGG ACAGAAATCA AGATAGCCAG ACTAAACTAT TGTAACAGGT AAATTATGCA
1201 TTTGAGATCT AGGCCAACCA ATATCTCATT GGCAAGATAG CAGAAGTAAC CTCTCTACTT
1261 GCAGATCTAC ATGCAGCTAG GAATACAACT ACTATAACAG ATTACCTAAA GGTATAACAT
1321 CATAAGGGTT ATCTCCTCTT GGTAGGAAAC CATAGAATGT AACCCTCGTG C
Predicted gene structure (within gDNA segment 12819 to 19570):
Exon 1 13310 13353 ( 44 n); cDNA 651 691 ( 41 n); score: 0.614
Intron 1 13354 14109 ( 756 n); Pd: 0.184 (s: 0.61), Pa: 0.989 (s: 0)
Exon 2 14110 14123 ( 14 n); cDNA 692 705 ( 14 n); score: 0.714
Intron 2 14124 14253 ( 130 n); Pd: 0.000 (s: 0), Pa: 0.830 (s: 0)
Exon 3 14254 14265 ( 12 n); cDNA 706 716 ( 11 n); score: 0.583
Intron 3 14266 16838 (2573 n); Pd: 0.079 (s: 0), Pa: 0.508 (s: 0.61)
Exon 4 16839 17104 ( 266 n); cDNA 717 982 ( 266 n); score: 0.741
MATCH 21326110+ SBtuc02-10-21.2146+ 0.741 336 0.245 C
PGS_21326110+_SBtuc02-10-21.2146+ (13310 13353,14110 14123,14254 14265,16839 17104)
Alignment (genomic DNA sequence = upper lines):
GTTGCTAGGT GGGGCTTGTG CTGTTTTCTA CTTAGTTGCA ACTTGTAACT CACTATTGCT 13369
||||||| || | || ||| | | || | || | || | |
GTTGCTAAGT GTGGGTTG-G CCCACTTGCA GTT--TAGCG AATG...... .......... 691
CTGTCCTGCA GGTTGCTAAA ATTAAGCAGA CTATGGTAGG GGACTCCAAA GATGGTCCTG 13429
.......... .......... .......... .......... .......... .......... 691
CCAGGCCTGT GATTCGCACA TTTTATGATC ACACACAGGT GAGCATGTAT TGCTCATATA 13489
.......... .......... .......... .......... .......... .......... 691
TGACAGTTTA TTTACTCTTC AAGGTCGTGA GACTCTTTTC AACACTTCCA CAAGATTGCC 13549
.......... .......... .......... .......... .......... .......... 691
TCCGAGTTAG GTCTCCTGCA GTATTTTTTT TCCTTTAATA TGCGGAGAGC TGCATATCAT 13609
.......... .......... .......... .......... .......... .......... 691
TGCATTATAG AAAGACTGAA ATACATGGGT AGATCAAATC CACCTGCCAC CACAGACCAC 13669
.......... .......... .......... .......... .......... .......... 691
ACTTATATAC ACACGCTCAA CTCACGTTTA GCACACTGGA TGCACACCTA GCAGCTGCAA 13729
.......... .......... .......... .......... .......... .......... 691
TTTGTAGTTA GATATTTGCT TACTGAGCTG TGTGGAGCAT TGACATGATA TTCAATTTTT 13789
.......... .......... .......... .......... .......... .......... 691
TAATAAACAA CATTTTTTTC CATTTTCACT AGTTTCTACT TCATTTCCCA TTGCTCAAAT 13849
.......... .......... .......... .......... .......... .......... 691
TTCCACTGTG CTCGTAAACA TGATTGATTT CTTGCAGGCC ATCAATGATC TGGATTTTCA 13909
.......... .......... .......... .......... .......... .......... 691
TCCTGAGAGT CCAATACTGA TATCAGCTGC AAAAGACAAT ACAATAAAGT ATGCTTATCC 13969
.......... .......... .......... .......... .......... .......... 691
TTGATGTCTA CACTCCGTGC TGTTAAATTG TCTATTTGAA GTGCTCATAC TAGGATTAAG 14029
.......... .......... .......... .......... .......... .......... 691
CATGATTTTT TAGGAATTTT TTGCGGTATT AATTGCTATC TGTGTTATTG TTTTGTACAT 14089
.......... .......... .......... .......... .......... .......... 691
GAAAAAATTT TGCTCAACAG ATTTTTTGAC TTCTCAAAGA CCAATGCGAG GAAAGCGTTC 14149
|||| ||| | | |
.......... .......... ATTTGTTGTC ATGT...... .......... .......... 705
AGAGTTATTC AGGTTGTAAA TTCTAGCAAT CCAATCTCTC TATATATCAT GTAAAATGGT 14209
.......... .......... .......... .......... .......... .......... 705
GTGTTCATTG CATTTAACCA GGCTCATTTG TTAATGCTTG GCAGGATACT CATAATGTTA 14269
| | | | || |
.......... .......... .......... .......... ....GCT-TT CGTAGT.... 716
GATCTGTATG TTTTCATCCT TGTGGGGATT ACCTTTTAGC AGGTACTATG ATCTTTTCAC 14329
.......... .......... .......... .......... .......... .......... 716
TAAATTTAAA TTTGATTTCT AGTTCTGCTG TGATTAACTG ATTCTTGATG TCTGATATCA 14389
.......... .......... .......... .......... .......... .......... 716
GTTTGATATG CTCTGATTTT TATGCATTAT AAGTTGTTAA CATGTTTTCA GTTGTTATCT 14449
.......... .......... .......... .......... .......... .......... 716
GTAAAGTAAT TTAATCATTT CACCAAAACA ATTTGATATT TGGGCTTAAG AATTTGGATT 14509
.......... .......... .......... .......... .......... .......... 716
TCGTTCCTGG ATCAACAGTT TCTGTCTCGT GGGCATTTGA AAAATACTGC AAGCATATCG 14569
.......... .......... .......... .......... .......... .......... 716
TATGGAATTT TCTTCTTACA TATAGTCAAA TATTAACATT CAAATATGTA TTTTTTTTAA 14629
.......... .......... .......... .......... .......... .......... 716
AAAAACTCAT TTTCATATAT TTGGAAGCAA GTGACACTGA TAAAATTATT TGCAGGGACT 14689
.......... .......... .......... .......... .......... .......... 716
GATCACCCAG TTGCTCATTT ATATGATATA AATACTTTTA CATGCTACTT ATCAGCAAAT 14749
.......... .......... .......... .......... .......... .......... 716
GCACAGGATT CTAGTTCTCC CATTAACCAG GTAGCTTTTC TCTTTCCTTC TGATTCACAA 14809
.......... .......... .......... .......... .......... .......... 716
GCATTAGATT GCATTGGTTA TATTCTCATC AAAGTTCTCC GCCAGCCATG CTTACTGATG 14869
.......... .......... .......... .......... .......... .......... 716
TTGCTGCCAG GTACGCTACT CCTGTACTGG GAGCTTGTAT GTGACTGCTT CTAAAGATGG 14929
.......... .......... .......... .......... .......... .......... 716
TTCTCTGCGC ATTTGGGATG GAGTATCTGC TGAATGTGTT CGACCTATTA TTGGAGCACA 14989
.......... .......... .......... .......... .......... .......... 716
TGGATCTGCA GAAGCTACTA GCGCAATTTT CACCAGAGAT GAGAGGTAAG CGAGCTACCA 15049
.......... .......... .......... .......... .......... .......... 716
GCATGTCTAA GGTGCTCTTC CCTCAAGATA AAATCCAGTC ATTGTTTGGT TTGAAGAACA 15109
.......... .......... .......... .......... .......... .......... 716
GAGAGAAAGG CATATGCTGT ATGATTCAAG ACAGTAACTA CTTCAAACCC TGTTTGGAAT 15169
.......... .......... .......... .......... .......... .......... 716
GTGGGAATCT TGTAGTGATT CTGAATGATT TATAACATGT CCTGGATAAT TTCCTGTGTT 15229
.......... .......... .......... .......... .......... .......... 716
TCAGACGTGT CGTAACTTTA TAACACGAAT AACTCTTTCT CCTTTACCCT ACTATTTCAC 15289
.......... .......... .......... .......... .......... .......... 716
CACTAAACAA CTAACTTGCC TATAAACACT TTTTAGACTT CTTCTGAAAG GCCTAGTGTT 15349
.......... .......... .......... .......... .......... .......... 716
TATGTGGTTA TATGCAGCGT GAATGCACTT GCATATAAGA TTGATCTAAA AAATTGATGT 15409
.......... .......... .......... .......... .......... .......... 716
AGTGAACTTT GACTACCCGA AGTATATGCT TAGATAGTTC ATGGATTTCT TTCATAAAAC 15469
.......... .......... .......... .......... .......... .......... 716
TGCACACTGT ATTCTGGTTA TCTGTTATGA AGTTTACTAC GTTCTTTCAG GTATGTCCTA 15529
.......... .......... .......... .......... .......... .......... 716
TCTTGTGGGA AAGATTCTTG TGTCAAGTTA TGGGAAGTTG GCACTGGACG ACTTGTGAAG 15589
.......... .......... .......... .......... .......... .......... 716
CAATATGCAG GAGCCATTCG CAGACAATTT CGTTGTCAGG TTAGTTTCTC TGTGTTTCTA 15649
.......... .......... .......... .......... .......... .......... 716
TAAGATTATT ATTTTTTCCT GATTTAAATT TACTCGTGTG CCATATATAT TATTTTTACC 15709
.......... .......... .......... .......... .......... .......... 716
CAAAATTTTA GGAAACAAAA TATTGCAATT CTTTAATTTG AAAATAGGCT GGTTTGAGCT 15769
.......... .......... .......... .......... .......... .......... 716
TGCAGCTTAG GATAACAACA TACCTAACCT TGCTATGATA GACAATAAAT ATGATAATAA 15829
.......... .......... .......... .......... .......... .......... 716
CTGTTCTTAC TATCCAGGCT GTCTTCAATG AAACCGAAGA ATTTGTTCTA TCAGTTGATG 15889
.......... .......... .......... .......... .......... .......... 716
AACAAAACAA TGAGGTAAAT TCCAAATTGA GAACAGTATA TATATTTGTA TTTCAGCAAG 15949
.......... .......... .......... .......... .......... .......... 716
CTTAACTATG ATACGTCACT CTTCAGGTTG TCGTCTGGGA TGCACTTACT GCAGAAAAGG 16009
.......... .......... .......... .......... .......... .......... 716
TTGCAAGATT GCCCTCTGGC AGCACTGGTG CTCCCAGATG GCTCGACCAC TCCCCAGTTG 16069
.......... .......... .......... .......... .......... .......... 716
AACCAGTTTT TGTTATTTGT GGAAATGATA GATCGATCAG ATTCTGGAAA CAAACCGTAT 16129
.......... .......... .......... .......... .......... .......... 716
AGCTTGTAGA TTCAACCATT CAAATCAAAA GTATGCTTTC AGTATTACGT TTCAGGAGGA 16189
.......... .......... .......... .......... .......... .......... 716
ATGTGCTCAT GTAACTTTAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTATTG 16249
.......... .......... .......... .......... .......... .......... 716
GAAACTGCAT AAGCAATTGA TTGATCTAAT AGCAAACCCC AATGATATGT TTTTTTTTTG 16309
.......... .......... .......... .......... .......... .......... 716
GCTCTGCATA GCTGATGACA GTTGTATGAA CCCTTGACCT GATTCTTATT GGTCAGGCCC 16369
.......... .......... .......... .......... .......... .......... 716
TTTTCGATGA TTTGCTATTT TATCCCAATT GTGGATTGCG GAATATATTT CTTCTTCGAA 16429
.......... .......... .......... .......... .......... .......... 716
TGTAATGATG GTCTCGCCCT ACCACATGTG TGATAGCCTA TAAAAGTTCT ACAACACATT 16489
.......... .......... .......... .......... .......... .......... 716
ATTGCATTTC ACTTAGGGCA TGTTTAGATT GAAGATGAAA ATTTTTTAGG TCACATCGGA 16549
.......... .......... .......... .......... .......... .......... 716
TATGTCGGAA GGATGTCGGG AGGGGTTTTT AAAAACTAAT AAAAAAAACA AATTACATAA 16609
.......... .......... .......... .......... .......... .......... 716
CTCGTCAGGA AACTGCAAGA CGAATCTATT AAGTATAATT AATCTATTAT TAGCACATGT 16669
.......... .......... .......... .......... .......... .......... 716
GGGTTACTGT AGCACTTAAG GCTAATCATG GACTAACTAG GCTTAAAAAA TTCATCTCGC 16729
.......... .......... .......... .......... .......... .......... 716
GATTTTCAAC CAAACTGTGT AATTATTTTT TATCTACATT TAATGTTTTA TGTATGTGTC 16789
.......... .......... .......... .......... .......... .......... 716
TAAAGATTCA ATGTGATGGA TGAAAATTTT TTAGGTGGGA ACTAAACAGG GCCTTATATT 16849
| | |||| |
.......... .......... .......... .......... .........G G-ATTATTTG 726
TTTTAAAAAA GATGTG-CAA GTGTCAGGCC TTGTTTAGTT TCGAAAACTT TTTGGTTTTT 16908
| | |||||| || | ||||| |||||||||| |||||| | |||||
CCGTTACTGT GATGTGTTTC GTCTTAGGCC TTGTTTAGTT CCGAAAAGTG AAAAGTTTTC 786
GAGACTGTAG CACTTTCGTT TTTATTTGAC AAATATTGTC TAATCATAGA GTAACTAGGT 16968
| |||||| |||||||||| | | | ||| ||||||| || |||||| || ||||||||
GGTGCTGTAG CACTTTCGTT TGTTTGTGAT AAATATTATC CAATCATGGA CTAACTAGGA 846
TTAAAAGATT TATCTCGCGA TTTATAGGTA AACTGTGCAA TTAGTTTTTA TTTTTGTATA 17028
| |||||||| ||||| || |||| | || ||| ||| || ||||||||| |||| || |
TCAAAAGATT CGTCTCGTGA TTTACAACTA AACCGTGTAA TTAGTTTTTG TTTTCGTCCA 906
TATTTAATGC TTCATGCATG TGTCGTAATA TTTGATGTGT TGAGAAATTT TGAAAAGTTT 17088
|||||| || |||||||||| || | || | || ||| || | | ||| | |||||| |||
TATTTACTGT TTCATGCATG TGCCACAAGA TTCGATATGA CGGGGAATCT TGAAAACTTT 966
TTGGTTTTTG GGGTGA 17104
|| ||||| ||||||
TTTGTTTTCA GGGTGA 982
********************************************************************************
EST sequence 181 +strand (File: 11678487+)
1 GCACGAGGCA AAAATAAAAC TTAATTTAGT GGACTTGAAC TTGTGTGGTC TATAGTTCCC
61 TCGAGTTACT TCATTCGCTT TCCTTGCTTC CTTCTATGAA GATTTCATGC AGCCTGCAAC
121 TACATGGGAA AGATGTCTGT TTAAAATTGA ATCCAATAAT ATGATATTTC TACTAATTGA
181 AAGCAGCCAA CACATGTTTT TTTACTGGTC TGAGGTGCTT AATAAGATCC TCTGTTATAT
241 TTTTTGGGGC CAGGCAAGTT AAGGCCTTGT TTAGTTTCAA AAAATTTTAC AAAATAACAA
301 TAGTACCACT TTCATTTGTA TTTGACAAAT ATTATCCAAT CATATACTAA TTAGACTCAA
361 AAGATTCGTC TCGTCAATTC CGACCAAATT GTGCAATTAG TTTTTATTTT CATATATATT
421 TAATACTTCA TGCATGCGTC TAAAGATTTG ATGTGACAGA GAATCTGAAA AATTTTGCAA
481 AATTTTCTGG GGAACTAAAC AATGCCTTAG AGCATCTCCA ACAACTTGGT ATTTCAACAT
541 GCTATCCTAC CAAATTTGCT ANAAGCATAA AAATCCTCCT CCAACAACTC CTTATCTCAA
601 CTTGCTAAAT TTCCCA
Predicted gene structure (within gDNA segment 15269 to 18357):
Exon 1 15847 15882 ( 36 n); cDNA 136 171 ( 36 n); score: 0.611
Intron 1 15883 16273 ( 391 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.64)
Exon 2 16274 16334 ( 61 n); cDNA 172 230 ( 59 n); score: 0.607
Intron 2 16335 16838 ( 504 n); Pd: 0.000 (s: 0.58), Pa: 0.508 (s: 0.70)
Exon 3 16839 17089 ( 251 n); cDNA 231 476 ( 246 n); score: 0.737
Intron 3 17090 18328 (1239 n); Pd: 0.000 (s: 0.78), Pa: 0.878 (s: 0)
Exon 4 18329 18357 ( 29 n); cDNA 477 503 ( 27 n); score: 0.552
MATCH 21326110+ 11678487+ 0.712 377 0.612 C
PGS_21326110+_11678487+ (15847 15882,16274 16334,16839 17089,18329 18357)
Alignment (genomic DNA sequence = upper lines):
GCTGTCTTCA ATGAAACCGA AGAATTTGTT CTATCAGTTG ATGAACAAAA CAATGAGGTA 15906
|||| | | || || | | | ||| || | | ||
TCTGTTTAAA ATTGAATCCA ATAATATGAT ATTTCT.... .......... .......... 171
AATTCCAAAT TGAGAACAGT ATATATATTT GTATTTCAGC AAGCTTAACT ATGATACGTC 15966
.......... .......... .......... .......... .......... .......... 171
ACTCTTCAGG TTGTCGTCTG GGATGCACTT ACTGCAGAAA AGGTTGCAAG ATTGCCCTCT 16026
.......... .......... .......... .......... .......... .......... 171
GGCAGCACTG GTGCTCCCAG ATGGCTCGAC CACTCCCCAG TTGAACCAGT TTTTGTTATT 16086
.......... .......... .......... .......... .......... .......... 171
TGTGGAAATG ATAGATCGAT CAGATTCTGG AAACAAACCG TATAGCTTGT AGATTCAACC 16146
.......... .......... .......... .......... .......... .......... 171
ATTCAAATCA AAAGTATGCT TTCAGTATTA CGTTTCAGGA GGAATGTGCT CATGTAACTT 16206
.......... .......... .......... .......... .......... .......... 171
TAGTTGTATA TGGGAGAAAT TTGCATAAGC ATTTTTTTTA TTGGAAACTG CATAAGCAAT 16266
.......... .......... .......... .......... .......... .......... 171
TGATTGATCT AATAGCAAAC CCCAATGATA TGTTTTTTTT TTGGCTCTGC ATAGCTGATG 16326
|| ||| | || | | | | | ||||||||| ||| |||| ||| |
.......ACT AATTGAAAGC AGCCAACACA TGTTTTTTTA CTGG-TCTGA GGTGCTTAAT 223
ACAGTTGTAT GAACCCTTGA CCTGATTCTT ATTGGTCAGG CCCTTTTCGA TGATTTGCTA 16386
| || |
A-AGATCC.. .......... .......... .......... .......... .......... 230
TTTTATCCCA ATTGTGGATT GCGGAATATA TTTCTTCTTC GAATGTAATG ATGGTCTCGC 16446
.......... .......... .......... .......... .......... .......... 230
CCTACCACAT GTGTGATAGC CTATAAAAGT TCTACAACAC ATTATTGCAT TTCACTTAGG 16506
.......... .......... .......... .......... .......... .......... 230
GCATGTTTAG ATTGAAGATG AAAATTTTTT AGGTCACATC GGATATGTCG GAAGGATGTC 16566
.......... .......... .......... .......... .......... .......... 230
GGGAGGGGTT TTTAAAAACT AATAAAAAAA ACAAATTACA TAACTCGTCA GGAAACTGCA 16626
.......... .......... .......... .......... .......... .......... 230
AGACGAATCT ATTAAGTATA ATTAATCTAT TATTAGCACA TGTGGGTTAC TGTAGCACTT 16686
.......... .......... .......... .......... .......... .......... 230
AAGGCTAATC ATGGACTAAC TAGGCTTAAA AAATTCATCT CGCGATTTTC AACCAAACTG 16746
.......... .......... .......... .......... .......... .......... 230
TGTAATTATT TTTTATCTAC ATTTAATGTT TTATGTATGT GTCTAAAGAT TCAATGTGAT 16806
.......... .......... .......... .......... .......... .......... 230
GGATGAAAAT TTTTTAGGTG GGAACTAAAC AGGGCCTTAT ATTTTTTAAA AAAGATGTGC 16866
|||| ||||||| | | ||
.......... .......... .......... ..TCTGTTAT ATTTTTT-GG GGCCA-G-GC 255
AAGTGTCAGG CCTTGTTTAG TTTCGAAAAC TTTTTGGTTT TTGAGACTGT AGCACTTTCG 16926
|||| | ||| |||||||||| |||| |||| |||| | | || | |||||||
AAGT-TAAGG CCTTGTTTAG TTTCAAAAAA TTTTACAAAA TAACAATAGT ACCACTTTCA 314
TTTTTATTTG ACAAATATTG TCTAATCATA GAGTAACTAG GTTTAAAAGA TTTATCTCGC 16986
||| |||||| ||||||||| || ||||||| | ||| ||| | |||||| || |||||
TTTGTATTTG ACAAATATTA TCCAATCATA TACTAATTAG ACTCAAAAGA TTCGTCTCGT 374
GATTTATAGG TAAACTGTGC AATTAGTTTT TATTTTTGTA TATATTTAAT GCTTCATGCA 17046
| || ||| ||||| |||||||||| |||||| || |||||||||| |||||||||
CAATTCCGAC CAAATTGTGC AATTAGTTTT TATTTTCATA TATATTTAAT ACTTCATGCA 434
TGTGTCGTAA TATTTGATGT GTTGAGAAAT TTTGAAAAGT TTTTGGTTTT TGGGGTGAGT 17106
|| ||| || ||||||||| | ||| | | |||||| | |||
TGCGTCTAAA GATTTGATGT G-ACAGAGAA TCTGAAAAAT TTT....... .......... 476
GGAGAAAAAA GAGAAGCTCC TTTCGAGGAA GCTCTCTGCG GCCTGTGGCT GCGGGTGACT 17166
.......... .......... .......... .......... .......... .......... 476
GGGTGTGGTC GTGTGGGCCT AGCGGGACTG CGGGAAGGAA GAATTTGACC GGATTCTCTA 17226
.......... .......... .......... .......... .......... .......... 476
TGTCACGTGG GCCTAGAATG GGATGGCCCA TCCGAGCCCG ACCCATATTT GCCAGATTCG 17286
.......... .......... .......... .......... .......... .......... 476
AGTGAACTGG CTCCAACTAA ACAATTTTCC CCATTTGCCA TTCCCGACGA GCACCTTCAC 17346
.......... .......... .......... .......... .......... .......... 476
CGTCTCCTCC CACCTCGCGT GGCACGCCAT GGCTTTCTCC CCGCGCTCGC CGTGGTCGCG 17406
.......... .......... .......... .......... .......... .......... 476
TCCCAAGAGA AACGACGTCT ACTCAACCTT CGTCGTCCAC GGCGATGACG ACGAGGACGA 17466
.......... .......... .......... .......... .......... .......... 476
CGCCCGCGGC AGCAGGCGCG GCAGGGGCCC GTCCACGCGG GCGGAGGAAG ACGAGGAGGA 17526
.......... .......... .......... .......... .......... .......... 476
AGACCCCTCC TCGCTGCCTC CGCTTCTCCA GCGGCTCCCC AAGGACTTCG GCGGCCCCTC 17586
.......... .......... .......... .......... .......... .......... 476
CTTTGACGAA GACGAGGACG CCTACTCCTC CGACCCCGAC GATGCTTCCC TCTCCGCTAC 17646
.......... .......... .......... .......... .......... .......... 476
GGTGGTCTTC AAGAGCGGCG CCCCGGCCTC CGCTCGATCT CCGTTCCTGG ATCTGCGGCG 17706
.......... .......... .......... .......... .......... .......... 476
CTCCAGCCCC CGCGCTACCG ATGACGACCC ATACTCTACC TTCGTCGTCC ACTCCACCGC 17766
.......... .......... .......... .......... .......... .......... 476
ACGCTCGGGG GGGACCTCCT CCAGCCCTCG AGGGTCCGCC TCAGGCACAT TCATCCGTCG 17826
.......... .......... .......... .......... .......... .......... 476
CTCCGGGGGC TCGTCCAGCC CTCACGAATC CGTCTCTGGC ACATTCATCC GCCGGACTAG 17886
.......... .......... .......... .......... .......... .......... 476
CACCCCGTCG AGCCCCCGGG ACTCGGTCTC CGGCACATTC ATCCGCCGAC CAGGGAGCCC 17946
.......... .......... .......... .......... .......... .......... 476
GTCGAGCCCC CGCGGGTCGT TCTCTGGCAC CTTCATTCGC CACACCAGCG GGGGTTCCAG 18006
.......... .......... .......... .......... .......... .......... 476
TTCCTATGAA TCTGCTTCTG GCGGCGGCGG GGGTTTCGGG TCCTCTTTCT GGAGTCCAGC 18066
.......... .......... .......... .......... .......... .......... 476
GGTGGAGCAG ACAGAGGAGC TCCGGCAACC GTCGCCTCTG ATGCAGCAAC AACAGCAGCA 18126
.......... .......... .......... .......... .......... .......... 476
GCATTCAAGG CGGAAGCCAT CAGTGAGCTC GGCGCCAGAC AGTGTTACCA GAGAGGATCC 18186
.......... .......... .......... .......... .......... .......... 476
TTCCACCAAG TACGAGCTGC TCCATGAGCT TGGTGCGCCT CTTGCTCTGG AATTATTGTT 18246
.......... .......... .......... .......... .......... .......... 476
TCATTAGTTC TGTATGTCTA CTTGTAGAAT GGCTGAAGCT TTGAGCTGTT TTGCGAAATG 18306
.......... .......... .......... .......... .......... .......... 476
CAAAATTCAA TTGGGAATGC AGGGAAAGGC TCATATGGTG CAGTGTACAA A 18357
| ||| | | ||| | | | ||||
.......... .......... ..GCAAA--A TTTTCTGGGG AACTAAACAA T 503
********************************************************************************
EST sequence 175 +strand (File: 13587489+)
1 ATCCAGACAG AAGAGGAGTT GACACCGATC CGCGTCGGCG AGGAGGGCCA AGTTCCGCCC
61 GACTTTCTTG GAGCGGAACC TGAGCCCACG CTCGGGAGGC GCGCCACATG CCAGCGCGCC
121 CTATCCCGGA GGCCGGAAAG GAGGAAGACG CCCGTGGCTC TTACGGATTC CCCCGGCTCC
181 CCTGCTCTGC TCTGTGGCTC CGACACGTCG CCGGTCCCAG CCCCGAGGTT AGTGGCCTTG
241 AGATTTTGCT TTGCTTTTGA GATTTGAACT GAGGCCTTGT TCAGATGTGA AAAAATTTTG
301 GATTTCGCTA CTGTAGCACT TTCGTTTGTT TGTGGTAAAT ATTGTCCAAT CATAGACTAA
361 CTAGGATCAA AAGATTCGTC TCGCGATTTA CAGTCAAACT GTGTGATTAG TTTTTATTTT
421 CGTCTATATT TAATGTTTCA TGCATATGCC GCAAGATTTC GATGTGACAG AAAATT
Predicted gene structure (within gDNA segment 15067 to 17607):
Exon 1 15234 15240 ( 7 n); cDNA 203 209 ( 7 n); score: 0.714
Intron 1 15241 15756 ( 516 n); Pd: 0.243 (s: 0), Pa: 0.947 (s: 0)
Exon 2 15757 15780 ( 24 n); cDNA 210 233 ( 24 n); score: 0.583
Intron 2 15781 16365 ( 585 n); Pd: 0.000 (s: 0), Pa: 0.474 (s: 0)
Exon 3 16366 16371 ( 6 n); cDNA 234 239 ( 6 n); score: 0.833
Intron 3 16372 16838 ( 467 n); Pd: 0.000 (s: 0), Pa: 0.508 (s: 0.60)
Exon 4 16839 17078 ( 240 n); cDNA 240 476 ( 237 n); score: 0.762
MATCH 21326110+ 13587489+ 0.762 277 0.582 C
PGS_21326110+_13587489+ (15234 15240,15757 15780,16366 16371,16839 17078)
Alignment (genomic DNA sequence = upper lines):
ACGTGTCGTA ACTTTATAAC ACGAATAACT CTTTCTCCTT TACCCTACTA TTTCACCACT 15293
|| |||
ACACGTC... .......... .......... .......... .......... .......... 209
AAACAACTAA CTTGCCTATA AACACTTTTT AGACTTCTTC TGAAAGGCCT AGTGTTTATG 15353
.......... .......... .......... .......... .......... .......... 209
TGGTTATATG CAGCGTGAAT GCACTTGCAT ATAAGATTGA TCTAAAAAAT TGATGTAGTG 15413
.......... .......... .......... .......... .......... .......... 209
AACTTTGACT ACCCGAAGTA TATGCTTAGA TAGTTCATGG ATTTCTTTCA TAAAACTGCA 15473
.......... .......... .......... .......... .......... .......... 209
CACTGTATTC TGGTTATCTG TTATGAAGTT TACTACGTTC TTTCAGGTAT GTCCTATCTT 15533
.......... .......... .......... .......... .......... .......... 209
GTGGGAAAGA TTCTTGTGTC AAGTTATGGG AAGTTGGCAC TGGACGACTT GTGAAGCAAT 15593
.......... .......... .......... .......... .......... .......... 209
ATGCAGGAGC CATTCGCAGA CAATTTCGTT GTCAGGTTAG TTTCTCTGTG TTTCTATAAG 15653
.......... .......... .......... .......... .......... .......... 209
ATTATTATTT TTTCCTGATT TAAATTTACT CGTGTGCCAT ATATATTATT TTTACCCAAA 15713
.......... .......... .......... .......... .......... .......... 209
ATTTTAGGAA ACAAAATATT GCAATTCTTT AATTTGAAAA TAGGCTGGTT TGAGCTTGCA 15773
|| ||| ||| |
.......... .......... .......... .......... ...GCCGGTC CCAGCCCCGA 226
GCTTAGGATA ACAACATACC TAACCTTGCT ATGATAGACA ATAAATATGA TAATAACTGT 15833
| ||||
GGTTAGT... .......... .......... .......... .......... .......... 233
TCTTACTATC CAGGCTGTCT TCAATGAAAC CGAAGAATTT GTTCTATCAG TTGATGAACA 15893
.......... .......... .......... .......... .......... .......... 233
AAACAATGAG GTAAATTCCA AATTGAGAAC AGTATATATA TTTGTATTTC AGCAAGCTTA 15953
.......... .......... .......... .......... .......... .......... 233
ACTATGATAC GTCACTCTTC AGGTTGTCGT CTGGGATGCA CTTACTGCAG AAAAGGTTGC 16013
.......... .......... .......... .......... .......... .......... 233
AAGATTGCCC TCTGGCAGCA CTGGTGCTCC CAGATGGCTC GACCACTCCC CAGTTGAACC 16073
.......... .......... .......... .......... .......... .......... 233
AGTTTTTGTT ATTTGTGGAA ATGATAGATC GATCAGATTC TGGAAACAAA CCGTATAGCT 16133
.......... .......... .......... .......... .......... .......... 233
TGTAGATTCA ACCATTCAAA TCAAAAGTAT GCTTTCAGTA TTACGTTTCA GGAGGAATGT 16193
.......... .......... .......... .......... .......... .......... 233
GCTCATGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCATTTTTT TTATTGGAAA 16253
.......... .......... .......... .......... .......... .......... 233
CTGCATAAGC AATTGATTGA TCTAATAGCA AACCCCAATG ATATGTTTTT TTTTTGGCTC 16313
.......... .......... .......... .......... .......... .......... 233
TGCATAGCTG ATGACAGTTG TATGAACCCT TGACCTGATT CTTATTGGTC AGGCCCTTTT 16373
| ||||
.......... .......... .......... .......... .......... ..GGCCTT.. 239
CGATGATTTG CTATTTTATC CCAATTGTGG ATTGCGGAAT ATATTTCTTC TTCGAATGTA 16433
.......... .......... .......... .......... .......... .......... 239
ATGATGGTCT CGCCCTACCA CATGTGTGAT AGCCTATAAA AGTTCTACAA CACATTATTG 16493
.......... .......... .......... .......... .......... .......... 239
CATTTCACTT AGGGCATGTT TAGATTGAAG ATGAAAATTT TTTAGGTCAC ATCGGATATG 16553
.......... .......... .......... .......... .......... .......... 239
TCGGAAGGAT GTCGGGAGGG GTTTTTAAAA ACTAATAAAA AAAACAAATT ACATAACTCG 16613
.......... .......... .......... .......... .......... .......... 239
TCAGGAAACT GCAAGACGAA TCTATTAAGT ATAATTAATC TATTATTAGC ACATGTGGGT 16673
.......... .......... .......... .......... .......... .......... 239
TACTGTAGCA CTTAAGGCTA ATCATGGACT AACTAGGCTT AAAAAATTCA TCTCGCGATT 16733
.......... .......... .......... .......... .......... .......... 239
TTCAACCAAA CTGTGTAATT ATTTTTTATC TACATTTAAT GTTTTATGTA TGTGTCTAAA 16793
.......... .......... .......... .......... .......... .......... 239
GATTCAATGT GATGGATGAA AATTTTTTAG GTGGGAACTA AACAGGGCCT TATATTTTTT 16853
| | | | |||
.......... .......... .......... .......... .....GAGAT TTTGCTTTGC 254
AAAAAAGATG TGCAAGTGTC AGGCCTTGTT TAGTTTCGAA AACTTTTTGG TTTTTGAGAC 16913
|||| || || || |||||||||| || | ||| || |||||| ||| | ||
TTTTGAGATT TG-AACTG-- AGGCCTTGTT CAGATGTGAA AAAATTTTGG ATTTCGCTAC 311
TGTAGCACTT TCGTTTTTAT TTGACAAATA TTGTCTAATC ATAGAGTAAC TAGGTTTAAA 16973
|||||||||| |||||| | | || ||||| ||||| |||| ||||| |||| |||| | |||
TGTAGCACTT TCGTTTGTTT GTGGTAAATA TTGTCCAATC ATAGACTAAC TAGGATCAAA 371
AGATTTATCT CGCGATTTAT AGGTAAACTG TGCAATTAGT TTTTATTTTT GTATATATTT 17033
||||| ||| ||||||||| || |||||| || |||||| ||||||||| || |||||||
AGATTCGTCT CGCGATTTAC AGTCAAACTG TGTGATTAGT TTTTATTTTC GTCTATATTT 431
AATGCTTCAT GCATGTGTCG TAATATTT-G ATGTGTTGAG AAATTT 17078
|||| ||||| |||| || || || |||| | ||||| || ||| ||
AATGTTTCAT GCATATGCCG CAAGATTTCG ATGTG-ACAG AAAATT 476
********************************************************************************
EST sequence 277 -strand (File: 24978904-)
1 CAGAATTTGC TCTCTTAGGC CTTGTTTACT TCCAAAAAAT TTTGCAAAAT AGGAATAGTA
61 GCATTTTCGT TTGTATTTGA CAAATATTGT CCAATTATGG ACTAACTAGG CTCAAAAGAT
121 TCGTCTGATC AATTCCGACC AAACTGTGTA ATTAGTTTTT ATTTTCATCT ATATTTAATA
181 CTCCATGCAT ACGTCTAAAC ATTCGATGTG ACGGGGAATC TGAAAAAATT TTGCAAATTT
241 TTAGTAACTT GATTCAGAAC AAGTACATTT GGCAGTTGTT CTCGGAGCTG TTCAACTTTG
301 TCAAACATGC CCGCAAAGCC AAGGGCCGGA TCTGCACATA CAGTACACCA AAGGAAGAAG
361 GCCACCCATA AAATTCCTTA ACCAAGGAAA TTTGACTGAA AAAAGCAATT AAGGTGATAC
421 CGTAACTTTC TTCAACTAAT CATACCGGTT AAGTACAACT CAGCACCCAT GAATCTCAGC
481 AAGATCAGCT TGTCAAGCAA ATATTTAGCT GGCATAACTG CAATGAGCCT GTAGCCTTTC
541 TGAATAGCAA AGAGCGATCC TTGATGGATC AAAGCGGCTG GTAAGCCTCC ATCATCATGC
601 CAACGATCCG CGCATCAACC CCAGCCTTGC CGGTGATTTG CTTCAGCTCG ATCAATCGTG
661 TGCATCCTAT GAGCTGAGGA AATTGTTCCA CTAGCAGCAA CAACAAACCC TCGTGCC
Predicted gene structure (within gDNA segment 16489 to 18480):
Exon 1 16857 17091 ( 235 n); cDNA 1 233 ( 233 n); score: 0.723
MATCH 21326110+ 24978904- 0.723 235 0.328 C
PGS_21326110+_24978904- (16857 17091)
Alignment (genomic DNA sequence = upper lines):
AAAGATGTGC AAGTGTCAGG CCTTGTTTAG TTTCGAAAAC TTTTTGGTTT TTGAGACTGT 16916
| || ||| | | ||| ||||||||| || | |||| |||| | | | ||
CAGAATTTGC -TCTCTTAGG CCTTGTTTAC TTCCAAAAAA TTTTGCAAAA TAGGAATAGT 59
AGCACTTTCG TTTTTATTTG ACAAATATTG TCTAATCATA GAGTAACTAG GTTTAAAAGA 16976
|||| ||||| ||| |||||| |||||||||| || ||| || || ||||||| | | ||||||
AGCATTTTCG TTTGTATTTG ACAAATATTG TCCAATTATG GACTAACTAG GCTCAAAAGA 119
TTTATCTCGC GATTTATAGG TAAACTGTGC AATTAGTTTT TATTTTTGTA TATATTTAAT 17036
|| ||| | || |||||||| |||||||||| |||||| | ||||||||||
TTCGTCTGAT CAATTCCGAC CAAACTGTGT AATTAGTTTT TATTTTCATC TATATTTAAT 179
GCTTCATGCA TGTGTCGTAA TATTTGATGT GTTGAGAAAT TTTGAAAAGT TTTTG 17091
|| |||||| | ||| || ||| ||||| | | | || | |||||| |||||
ACTCCATGCA TACGTCTAAA CATTCGATGT GACGGGGAA- TCTGAAAAAA TTTTG 233
********************************************************************************
EST sequence 58 +strand (File: SBtuc02-10-21.4286+)
1 GCACGAGGAT CCATGGGAGG AGCGGGGCAC CACGACGTGC ATTTCTTGGA CGCGTGCTTC
61 CTCTGCCGGA AGCCGCTCGC CAGCAACCGC GACATCTTCA TGTACAGAGG CGACACGGCG
121 TTCTGCAGCG ACGAGTGCAG GAGCGCGCAG ATGGCGGCGG ACGAAGCGGC GGAGAGGAAC
181 AAGGCCATGG CCAGCGCGGT GACACATGGG GCGCTGCCCG CCAGGGAAGC GGAAGCGGAA
241 GGCCCACGGG AACGGGAGCG CGGCAAGGTC CGGGCCGGGT CCATCCTGGC CCTGTAACCA
301 AAGTCTCTCG ATCTCAATCT GCCTGTGCAC GGGCATGGCA GTTTTCTTTT CTCTAGCTTT
361 AGGCCTTGTT TAGTTCCGAA AAATTTTGGG AAATGGACAC TGTAGCATTT TCGTTTTTAT
421 TTAACAAATA TTGTCTAATC ATGGAGTAAC TAGGCTCAAA AGATTCGTCT CGTCAATTTC
481 GACCAAACTG TGCAATTAGT TTTTATTTTC GTCTATATTT AATACTCCAT GCATGCGTCT
541 AAAGATTCGA TGTGACGGGG AATCTGAAAA ATTTTGCAAA ATTTTCTAGG AAGTAAACAA
601 GGCCTTACCT TACGAGACGC GCCACCGGAG GTCGTCAGAT TAGTGTACAC GGGTTTGTGT
661 GTTTTTTTGT TGAAAAAAAC CCTTTGGGGA TCATCCGCTG CCGTGTTGGT TCTTGCATGG
721 TTTGCATCTT GCAAATGTTG CATTGCTTGG TGGTGTGGTC CATGTACACT GCACGTACGT
781 ACTACGTATT ATGCATTATT AGTTAGTCTA CTACAAGGAA ATAATAATCA ATAATTGCGT
841 GATGTGG
Predicted gene structure (within gDNA segment 14774 to 19017):
Exon 1 16870 17091 ( 222 n); cDNA 358 576 ( 219 n); score: 0.811
MATCH 21326110+ SBtuc02-10-21.4286+ 0.811 222 0.262 C
PGS_21326110+_SBtuc02-10-21.4286+ (16870 17091)
Alignment (genomic DNA sequence = upper lines):
TGTCAGGCCT TGTTTAGTTT CGAAAACTTT TTGGTTTTTG AGACTGTAGC ACTTTCGTTT 16929
| | |||||| ||||||||| |||||| ||| | || | | | |||||||| | ||||||||
T-TTAGGCCT TGTTTAGTTC CGAAAAATTT TGGGAAATGG ACACTGTAGC ATTTTCGTTT 416
TTATTTGACA AATATTGTCT AATCATAGAG TAACTAGGTT TAAAAGATTT ATCTCG-CGA 16988
|||||| ||| |||||||||| |||||| ||| |||||||| | |||||||| ||||| | |
TTATTTAACA AATATTGTCT AATCATGGAG TAACTAGGCT CAAAAGATTC GTCTCGTCAA 476
TTTATAGGTA AACTGTGCAA TTAGTTTTTA TTTTTGTATA TATTTAATGC TTCATGCATG 17048
||| | | |||||||||| |||||||||| |||| || || |||||||| | | ||||||||
TTTCGA-CCA AACTGTGCAA TTAGTTTTTA TTTTCGTCTA TATTTAATAC TCCATGCATG 535
TGTCGTAATA TTTGATGTGT TGAGAAATTT TGAAAAGTTT TTG 17091
||| || | || |||||| | | || | |||||| || |||
CGTCTAAAGA TTCGATGTGA CGGGGAA-TC TGAAAA-ATT TTG 576
********************************************************************************
EST sequence 26 +strand (File: SBtuc02-10-21.1501+)
1 TGATCCCGCC CACCAGCATC CTGGTGCTCA ACATGGTGGG CGTGGTGGCT GGCTTCTCGG
61 CCGCGCTCAA CAGCGGCTAC GAGTCCTGGG GCCCTCTCTT TGGCAAGGTG TTCTTCGCCA
121 TGTGGGTGAT CATGCACCTG TACCCGTTCC TCAAGGGTCT CATGGGCCGA CAGAACCGCA
181 CGCCCACCAT CGTGGTGCTC TGGTCCGTCC TCCTCGCCTC CGTCTTCTCC CTCCTCTGGG
241 TCAAGATCGA CCCATTCGTC GGAGGAACCG AGACCGTCAA CTCCAACAAC TGCAACACAG
301 TCATCTGCTG ATTCACCATC GGTAAGCTGG TGCCGTGCCG CGGCCGATGT GTTTCTGGTG
361 CGGATTTCCT CTGTCCATCT CGCATCTGGG CTTTTGCCCC AGGATCTGGG AGGGGTGGTG
421 TAGATTAGTT CTATTTTGCA TCCAAGTGTT GATTGGTGTC GTCTGTATTA TGAAAAGTTT
481 TGGTGCTGAA GTGTTAAACT CGCCTCAATT GTGAAAAAGG CACTGTTTAA GTGTGTGTAA
541 ATCATAGGAA CGTGGGGGAA AAAAGGAACT GAGATACACT TGCCTACCAA AAGGAAGAGA
601 TCATTTACAT CAGTGGAGCT AGAAATTGCA GTTGTGTTAA GCATGACCGC ACGAGTGATG
661 ATTATGGGTA CGCAAACGCA ACTGAATTTT ATGCACTGGC CTGCTGTGGA AAGGAGATGA
721 CATTTCCTCA TGAAGACCAT GATTAACGTA CATTGTACAC TAAACAAGAC GTGCGCTCAG
781 TCTTTAGAAA TCCTCCAGGG TACCAAGTGC TCAAGCCCCC AAGCTGTCTG TCATCATCCA
841 GTAGCACGAA CTTTTTCCAC ACCAAGGCCT TGTTTAGATA CGAAAACTTT TTGGATTTCG
901 CTACTGTAGC ACTTTTGTTT GTTTGTGGTA AATATTCTCC AATCATAGAC TAATTAGGGT
961 TAAAAGATTC ATCTCGCGAT TTACAAGCAA ACTGTGTAAT TAGTTTTATT TTCG
Predicted gene structure (within gDNA segment 12254 to 17452):
Exon 1 13310 13317 ( 8 n); cDNA 799 806 ( 8 n); score: 0.500
Intron 1 13318 13380 ( 63 n); Pd: 0.789 (s: 0), Pa: 1.000 (s: 0)
Exon 2 13381 13389 ( 9 n); cDNA 807 814 ( 8 n); score: 0.778
Intron 2 13390 13886 ( 497 n); Pd: 0.000 (s: 0), Pa: 0.939 (s: 0)
Exon 3 13887 13893 ( 7 n); cDNA 815 821 ( 7 n); score: 0.714
Intron 3 13894 14270 ( 377 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.63)
Exon 4 14271 14311 ( 41 n); cDNA 822 860 ( 39 n); score: 0.634
Intron 4 14312 16869 (2558 n); Pd: 0.979 (s: 0.63), Pa: 0.000 (s: 0.80)
Exon 5 16870 17024 ( 155 n); cDNA 861 1014 ( 154 n); score: 0.819
MATCH 21326110+ SBtuc02-10-21.1501+ 0.819 220 0.217 C
PGS_21326110+_SBtuc02-10-21.1501+ (13310 13317,13381 13389,13887 13893,14271 14311,16870 17024)
Alignment (genomic DNA sequence = upper lines):
GTTGCTAGGT GGGGCTTGTG CTGTTTTCTA CTTAGTTGCA ACTTGTAACT CACTATTGCT 13369
| | | |
GGTACCAA.. .......... .......... .......... .......... .......... 806
CTGTCCTGCA GGTTGCTAAA ATTAAGCAGA CTATGGTAGG GGACTCCAAA GATGGTCCTG 13429
| |||| ||
.......... .G-TGCTCAA .......... .......... .......... .......... 814
CCAGGCCTGT GATTCGCACA TTTTATGATC ACACACAGGT GAGCATGTAT TGCTCATATA 13489
.......... .......... .......... .......... .......... .......... 814
TGACAGTTTA TTTACTCTTC AAGGTCGTGA GACTCTTTTC AACACTTCCA CAAGATTGCC 13549
.......... .......... .......... .......... .......... .......... 814
TCCGAGTTAG GTCTCCTGCA GTATTTTTTT TCCTTTAATA TGCGGAGAGC TGCATATCAT 13609
.......... .......... .......... .......... .......... .......... 814
TGCATTATAG AAAGACTGAA ATACATGGGT AGATCAAATC CACCTGCCAC CACAGACCAC 13669
.......... .......... .......... .......... .......... .......... 814
ACTTATATAC ACACGCTCAA CTCACGTTTA GCACACTGGA TGCACACCTA GCAGCTGCAA 13729
.......... .......... .......... .......... .......... .......... 814
TTTGTAGTTA GATATTTGCT TACTGAGCTG TGTGGAGCAT TGACATGATA TTCAATTTTT 13789
.......... .......... .......... .......... .......... .......... 814
TAATAAACAA CATTTTTTTC CATTTTCACT AGTTTCTACT TCATTTCCCA TTGCTCAAAT 13849
.......... .......... .......... .......... .......... .......... 814
TTCCACTGTG CTCGTAAACA TGATTGATTT CTTGCAGGCC ATCAATGATC TGGATTTTCA 13909
||| ||
.......... .......... .......... .......GCC CCCA...... .......... 821
TCCTGAGAGT CCAATACTGA TATCAGCTGC AAAAGACAAT ACAATAAAGT ATGCTTATCC 13969
.......... .......... .......... .......... .......... .......... 821
TTGATGTCTA CACTCCGTGC TGTTAAATTG TCTATTTGAA GTGCTCATAC TAGGATTAAG 14029
.......... .......... .......... .......... .......... .......... 821
CATGATTTTT TAGGAATTTT TTGCGGTATT AATTGCTATC TGTGTTATTG TTTTGTACAT 14089
.......... .......... .......... .......... .......... .......... 821
GAAAAAATTT TGCTCAACAG ATTTTTTGAC TTCTCAAAGA CCAATGCGAG GAAAGCGTTC 14149
.......... .......... .......... .......... .......... .......... 821
AGAGTTATTC AGGTTGTAAA TTCTAGCAAT CCAATCTCTC TATATATCAT GTAAAATGGT 14209
.......... .......... .......... .......... .......... .......... 821
GTGTTCATTG CATTTAACCA GGCTCATTTG TTAATGCTTG GCAGGATACT CATAATGTTA 14269
.......... .......... .......... .......... .......... .......... 821
GATCTGTATG TTTTCATCCT TGTGGGGATT ACCTTTTAGC AGGTACTATG ATCTTTTCAC 14329
| |||| || | |||||| || | | | ||||| | |
.AGCTGTCTG TCATCATCC- AGT-AGCACG AACTTTTTCC AC........ .......... 860
TAAATTTAAA TTTGATTTCT AGTTCTGCTG TGATTAACTG ATTCTTGATG TCTGATATCA 14389
.......... .......... .......... .......... .......... .......... 860
GTTTGATATG CTCTGATTTT TATGCATTAT AAGTTGTTAA CATGTTTTCA GTTGTTATCT 14449
.......... .......... .......... .......... .......... .......... 860
GTAAAGTAAT TTAATCATTT CACCAAAACA ATTTGATATT TGGGCTTAAG AATTTGGATT 14509
.......... .......... .......... .......... .......... .......... 860
TCGTTCCTGG ATCAACAGTT TCTGTCTCGT GGGCATTTGA AAAATACTGC AAGCATATCG 14569
.......... .......... .......... .......... .......... .......... 860
TATGGAATTT TCTTCTTACA TATAGTCAAA TATTAACATT CAAATATGTA TTTTTTTTAA 14629
.......... .......... .......... .......... .......... .......... 860
AAAAACTCAT TTTCATATAT TTGGAAGCAA GTGACACTGA TAAAATTATT TGCAGGGACT 14689
.......... .......... .......... .......... .......... .......... 860
GATCACCCAG TTGCTCATTT ATATGATATA AATACTTTTA CATGCTACTT ATCAGCAAAT 14749
.......... .......... .......... .......... .......... .......... 860
GCACAGGATT CTAGTTCTCC CATTAACCAG GTAGCTTTTC TCTTTCCTTC TGATTCACAA 14809
.......... .......... .......... .......... .......... .......... 860
GCATTAGATT GCATTGGTTA TATTCTCATC AAAGTTCTCC GCCAGCCATG CTTACTGATG 14869
.......... .......... .......... .......... .......... .......... 860
TTGCTGCCAG GTACGCTACT CCTGTACTGG GAGCTTGTAT GTGACTGCTT CTAAAGATGG 14929
.......... .......... .......... .......... .......... .......... 860
TTCTCTGCGC ATTTGGGATG GAGTATCTGC TGAATGTGTT CGACCTATTA TTGGAGCACA 14989
.......... .......... .......... .......... .......... .......... 860
TGGATCTGCA GAAGCTACTA GCGCAATTTT CACCAGAGAT GAGAGGTAAG CGAGCTACCA 15049
.......... .......... .......... .......... .......... .......... 860
GCATGTCTAA GGTGCTCTTC CCTCAAGATA AAATCCAGTC ATTGTTTGGT TTGAAGAACA 15109
.......... .......... .......... .......... .......... .......... 860
GAGAGAAAGG CATATGCTGT ATGATTCAAG ACAGTAACTA CTTCAAACCC TGTTTGGAAT 15169
.......... .......... .......... .......... .......... .......... 860
GTGGGAATCT TGTAGTGATT CTGAATGATT TATAACATGT CCTGGATAAT TTCCTGTGTT 15229
.......... .......... .......... .......... .......... .......... 860
TCAGACGTGT CGTAACTTTA TAACACGAAT AACTCTTTCT CCTTTACCCT ACTATTTCAC 15289
.......... .......... .......... .......... .......... .......... 860
CACTAAACAA CTAACTTGCC TATAAACACT TTTTAGACTT CTTCTGAAAG GCCTAGTGTT 15349
.......... .......... .......... .......... .......... .......... 860
TATGTGGTTA TATGCAGCGT GAATGCACTT GCATATAAGA TTGATCTAAA AAATTGATGT 15409
.......... .......... .......... .......... .......... .......... 860
AGTGAACTTT GACTACCCGA AGTATATGCT TAGATAGTTC ATGGATTTCT TTCATAAAAC 15469
.......... .......... .......... .......... .......... .......... 860
TGCACACTGT ATTCTGGTTA TCTGTTATGA AGTTTACTAC GTTCTTTCAG GTATGTCCTA 15529
.......... .......... .......... .......... .......... .......... 860
TCTTGTGGGA AAGATTCTTG TGTCAAGTTA TGGGAAGTTG GCACTGGACG ACTTGTGAAG 15589
.......... .......... .......... .......... .......... .......... 860
CAATATGCAG GAGCCATTCG CAGACAATTT CGTTGTCAGG TTAGTTTCTC TGTGTTTCTA 15649
.......... .......... .......... .......... .......... .......... 860
TAAGATTATT ATTTTTTCCT GATTTAAATT TACTCGTGTG CCATATATAT TATTTTTACC 15709
.......... .......... .......... .......... .......... .......... 860
CAAAATTTTA GGAAACAAAA TATTGCAATT CTTTAATTTG AAAATAGGCT GGTTTGAGCT 15769
.......... .......... .......... .......... .......... .......... 860
TGCAGCTTAG GATAACAACA TACCTAACCT TGCTATGATA GACAATAAAT ATGATAATAA 15829
.......... .......... .......... .......... .......... .......... 860
CTGTTCTTAC TATCCAGGCT GTCTTCAATG AAACCGAAGA ATTTGTTCTA TCAGTTGATG 15889
.......... .......... .......... .......... .......... .......... 860
AACAAAACAA TGAGGTAAAT TCCAAATTGA GAACAGTATA TATATTTGTA TTTCAGCAAG 15949
.......... .......... .......... .......... .......... .......... 860
CTTAACTATG ATACGTCACT CTTCAGGTTG TCGTCTGGGA TGCACTTACT GCAGAAAAGG 16009
.......... .......... .......... .......... .......... .......... 860
TTGCAAGATT GCCCTCTGGC AGCACTGGTG CTCCCAGATG GCTCGACCAC TCCCCAGTTG 16069
.......... .......... .......... .......... .......... .......... 860
AACCAGTTTT TGTTATTTGT GGAAATGATA GATCGATCAG ATTCTGGAAA CAAACCGTAT 16129
.......... .......... .......... .......... .......... .......... 860
AGCTTGTAGA TTCAACCATT CAAATCAAAA GTATGCTTTC AGTATTACGT TTCAGGAGGA 16189
.......... .......... .......... .......... .......... .......... 860
ATGTGCTCAT GTAACTTTAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTATTG 16249
.......... .......... .......... .......... .......... .......... 860
GAAACTGCAT AAGCAATTGA TTGATCTAAT AGCAAACCCC AATGATATGT TTTTTTTTTG 16309
.......... .......... .......... .......... .......... .......... 860
GCTCTGCATA GCTGATGACA GTTGTATGAA CCCTTGACCT GATTCTTATT GGTCAGGCCC 16369
.......... .......... .......... .......... .......... .......... 860
TTTTCGATGA TTTGCTATTT TATCCCAATT GTGGATTGCG GAATATATTT CTTCTTCGAA 16429
.......... .......... .......... .......... .......... .......... 860
TGTAATGATG GTCTCGCCCT ACCACATGTG TGATAGCCTA TAAAAGTTCT ACAACACATT 16489
.......... .......... .......... .......... .......... .......... 860
ATTGCATTTC ACTTAGGGCA TGTTTAGATT GAAGATGAAA ATTTTTTAGG TCACATCGGA 16549
.......... .......... .......... .......... .......... .......... 860
TATGTCGGAA GGATGTCGGG AGGGGTTTTT AAAAACTAAT AAAAAAAACA AATTACATAA 16609
.......... .......... .......... .......... .......... .......... 860
CTCGTCAGGA AACTGCAAGA CGAATCTATT AAGTATAATT AATCTATTAT TAGCACATGT 16669
.......... .......... .......... .......... .......... .......... 860
GGGTTACTGT AGCACTTAAG GCTAATCATG GACTAACTAG GCTTAAAAAA TTCATCTCGC 16729
.......... .......... .......... .......... .......... .......... 860
GATTTTCAAC CAAACTGTGT AATTATTTTT TATCTACATT TAATGTTTTA TGTATGTGTC 16789
.......... .......... .......... .......... .......... .......... 860
TAAAGATTCA ATGTGATGGA TGAAAATTTT TTAGGTGGGA ACTAAACAGG GCCTTATATT 16849
.......... .......... .......... .......... .......... .......... 860
TTTTAAAAAA GATGTGCAAG TGTCAGGCCT TGTTTAGTTT CGAAAACTTT TTGGTTTTTG 16909
|||||| ||||||| | |||||||||| |||| ||| |
.......... .......... ACCAAGGCCT TGTTTAGATA CGAAAACTTT TTGGATTTCG 900
AGACTGTAGC ACTTTCGTTT TTATTTGACA AATATTGTCT AATCATAGAG TAACTAGGTT 16969
|||||||| ||||| |||| | | || | |||||| || ||||||||| ||| |||| |
CTACTGTAGC ACTTTTGTTT GTTTGTGGTA AATATTCTCC AATCATAGAC TAATTAGGGT 960
TAAAAGATTT ATCTCGCGAT TTATAGGTAA ACTGTGCAAT TAGTTTTTAT TTTTG 17024
||||||||| |||||||||| ||| | | || |||||| ||| ||| |||||| ||| |
TAAAAGATTC ATCTCGCGAT TTACAAGCAA ACTGTGTAAT TAG-TTTTAT TTTCG 1014
********************************************************************************
EST sequence 21 +strand (File: SBtuc02-10-21.11189+)
1 GCACGAGGCA GCTTGCCTCC TACTCCGCCA TCATCCAGAT CCGGCCGGTG CGTGCGATGG
61 CGCTGCGCGT TCTGGCCCGT AAGCTGAGGT TCCCTGCCAC GTCCGTTCTC CAGCGGGCGT
121 CGACCCCCGT GGTGTCGCCG CCGGCGAGCT CCCGACTTCT CACCTCCCAC TCCTCTCAGA
181 GTGGAGGAGC CAAGAGAGCA GTGAATGAGA CCAGGAATGC TCGACCAAGG TGGAGGAATT
241 ACAAGAAACT GGAGAAGCGT TTTTTGCGCG ATATGGAGAA GGACATGAAG AATTTCAAGG
301 AGCTTTCATT AGCTATGGAC AACTTGCCAA GGAATGTTGT ACTCACTTCC TCTGTTGGTC
361 TTGCGGTTTT GACAACCGGC TGGGCGTATG CCATTGGTGT TTTCGATTGG AACAGAATGG
421 GGGACAGTGA ACCTTCGGAT CAACAAGGTG TTGTGTAGAC GCACCCCATG AATAATCTAT
481 GAGACTTTTA TATTTATGTA AGAGAAATGA AATGGTGCGG ACAAGGAGAA GACTGTATGC
541 TTGTTAAGTA AGGCCTTGTT TAGATCCAAA ATTTTTTCTG TTTTTGACAC TAGCAATTTC
601 GTTTTTATTT GACAAACCTT GTCCAATCAT GGAGTAACTA GACTCAAAAA TTTAATTGGA
661 TGTTTGACTG TTTGGTT
Predicted gene structure (within gDNA segment 13824 to 17551):
Exon 1 13887 13902 ( 16 n); cDNA 465 480 ( 16 n); score: 0.688
Intron 1 13903 14253 ( 351 n); Pd: 0.000 (s: 0), Pa: 0.830 (s: 0)
Exon 2 14254 14265 ( 12 n); cDNA 481 492 ( 12 n); score: 0.583
Intron 2 14266 15883 (1618 n); Pd: 0.079 (s: 0), Pa: 0.361 (s: 0)
Exon 3 15884 15903 ( 20 n); cDNA 493 511 ( 19 n); score: 0.650
Intron 3 15904 16100 ( 197 n); Pd: 0.991 (s: 0), Pa: 0.050 (s: 0)
Exon 4 16101 16138 ( 38 n); cDNA 512 546 ( 35 n); score: 0.605
Intron 4 16139 16869 ( 731 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.76)
Exon 5 16870 16966 ( 97 n); cDNA 547 641 ( 95 n); score: 0.825
MATCH 21326110+ SBtuc02-10-21.11189+ 0.825 183 0.270 C
PGS_21326110+_SBtuc02-10-21.11189+ (13887 13902,14254 14265,15884 15903,16101 16138,16870 16966)
Alignment (genomic DNA sequence = upper lines):
GCCATCAATG ATCTGGATTT TCATCCTGAG AGTCCAATAC TGATATCAGC TGCAAAAGAC 13946
|||| ||| ||||
CCCATGAATA ATCTAT.... .......... .......... .......... .......... 480
AATACAATAA AGTATGCTTA TCCTTGATGT CTACACTCCG TGCTGTTAAA TTGTCTATTT 14006
.......... .......... .......... .......... .......... .......... 480
GAAGTGCTCA TACTAGGATT AAGCATGATT TTTTAGGAAT TTTTTGCGGT ATTAATTGCT 14066
.......... .......... .......... .......... .......... .......... 480
ATCTGTGTTA TTGTTTTGTA CATGAAAAAA TTTTGCTCAA CAGATTTTTT GACTTCTCAA 14126
.......... .......... .......... .......... .......... .......... 480
AGACCAATGC GAGGAAAGCG TTCAGAGTTA TTCAGGTTGT AAATTCTAGC AATCCAATCT 14186
.......... .......... .......... .......... .......... .......... 480
CTCTATATAT CATGTAAAAT GGTGTGTTCA TTGCATTTAA CCAGGCTCAT TTGTTAATGC 14246
.......... .......... .......... .......... .......... .......... 480
TTGGCAGGAT ACTCATAATG TTAGATCTGT ATGTTTTCAT CCTTGTGGGG ATTACCTTTT 14306
|| ||| ||
.......GAG ACTTTTATA. .......... .......... .......... .......... 492
AGCAGGTACT ATGATCTTTT CACTAAATTT AAATTTGATT TCTAGTTCTG CTGTGATTAA 14366
.......... .......... .......... .......... .......... .......... 492
CTGATTCTTG ATGTCTGATA TCAGTTTGAT ATGCTCTGAT TTTTATGCAT TATAAGTTGT 14426
.......... .......... .......... .......... .......... .......... 492
TAACATGTTT TCAGTTGTTA TCTGTAAAGT AATTTAATCA TTTCACCAAA ACAATTTGAT 14486
.......... .......... .......... .......... .......... .......... 492
ATTTGGGCTT AAGAATTTGG ATTTCGTTCC TGGATCAACA GTTTCTGTCT CGTGGGCATT 14546
.......... .......... .......... .......... .......... .......... 492
TGAAAAATAC TGCAAGCATA TCGTATGGAA TTTTCTTCTT ACATATAGTC AAATATTAAC 14606
.......... .......... .......... .......... .......... .......... 492
ATTCAAATAT GTATTTTTTT TAAAAAAACT CATTTTCATA TATTTGGAAG CAAGTGACAC 14666
.......... .......... .......... .......... .......... .......... 492
TGATAAAATT ATTTGCAGGG ACTGATCACC CAGTTGCTCA TTTATATGAT ATAAATACTT 14726
.......... .......... .......... .......... .......... .......... 492
TTACATGCTA CTTATCAGCA AATGCACAGG ATTCTAGTTC TCCCATTAAC CAGGTAGCTT 14786
.......... .......... .......... .......... .......... .......... 492
TTCTCTTTCC TTCTGATTCA CAAGCATTAG ATTGCATTGG TTATATTCTC ATCAAAGTTC 14846
.......... .......... .......... .......... .......... .......... 492
TCCGCCAGCC ATGCTTACTG ATGTTGCTGC CAGGTACGCT ACTCCTGTAC TGGGAGCTTG 14906
.......... .......... .......... .......... .......... .......... 492
TATGTGACTG CTTCTAAAGA TGGTTCTCTG CGCATTTGGG ATGGAGTATC TGCTGAATGT 14966
.......... .......... .......... .......... .......... .......... 492
GTTCGACCTA TTATTGGAGC ACATGGATCT GCAGAAGCTA CTAGCGCAAT TTTCACCAGA 15026
.......... .......... .......... .......... .......... .......... 492
GATGAGAGGT AAGCGAGCTA CCAGCATGTC TAAGGTGCTC TTCCCTCAAG ATAAAATCCA 15086
.......... .......... .......... .......... .......... .......... 492
GTCATTGTTT GGTTTGAAGA ACAGAGAGAA AGGCATATGC TGTATGATTC AAGACAGTAA 15146
.......... .......... .......... .......... .......... .......... 492
CTACTTCAAA CCCTGTTTGG AATGTGGGAA TCTTGTAGTG ATTCTGAATG ATTTATAACA 15206
.......... .......... .......... .......... .......... .......... 492
TGTCCTGGAT AATTTCCTGT GTTTCAGACG TGTCGTAACT TTATAACACG AATAACTCTT 15266
.......... .......... .......... .......... .......... .......... 492
TCTCCTTTAC CCTACTATTT CACCACTAAA CAACTAACTT GCCTATAAAC ACTTTTTAGA 15326
.......... .......... .......... .......... .......... .......... 492
CTTCTTCTGA AAGGCCTAGT GTTTATGTGG TTATATGCAG CGTGAATGCA CTTGCATATA 15386
.......... .......... .......... .......... .......... .......... 492
AGATTGATCT AAAAAATTGA TGTAGTGAAC TTTGACTACC CGAAGTATAT GCTTAGATAG 15446
.......... .......... .......... .......... .......... .......... 492
TTCATGGATT TCTTTCATAA AACTGCACAC TGTATTCTGG TTATCTGTTA TGAAGTTTAC 15506
.......... .......... .......... .......... .......... .......... 492
TACGTTCTTT CAGGTATGTC CTATCTTGTG GGAAAGATTC TTGTGTCAAG TTATGGGAAG 15566
.......... .......... .......... .......... .......... .......... 492
TTGGCACTGG ACGACTTGTG AAGCAATATG CAGGAGCCAT TCGCAGACAA TTTCGTTGTC 15626
.......... .......... .......... .......... .......... .......... 492
AGGTTAGTTT CTCTGTGTTT CTATAAGATT ATTATTTTTT CCTGATTTAA ATTTACTCGT 15686
.......... .......... .......... .......... .......... .......... 492
GTGCCATATA TATTATTTTT ACCCAAAATT TTAGGAAACA AAATATTGCA ATTCTTTAAT 15746
.......... .......... .......... .......... .......... .......... 492
TTGAAAATAG GCTGGTTTGA GCTTGCAGCT TAGGATAACA ACATACCTAA CCTTGCTATG 15806
.......... .......... .......... .......... .......... .......... 492
ATAGACAATA AATATGATAA TAACTGTTCT TACTATCCAG GCTGTCTTCA ATGAAACCGA 15866
.......... .......... .......... .......... .......... .......... 492
AGAATTTGTT CTATCAGTTG ATGAACAAAA CAATGAGGTA AATTCCAAAT TGAGAACAGT 15926
|| ||| | | | |||||
.......... .......TTT ATGTA-AGAG AAATGAA... .......... .......... 511
ATATATATTT GTATTTCAGC AAGCTTAACT ATGATACGTC ACTCTTCAGG TTGTCGTCTG 15986
.......... .......... .......... .......... .......... .......... 511
GGATGCACTT ACTGCAGAAA AGGTTGCAAG ATTGCCCTCT GGCAGCACTG GTGCTCCCAG 16046
.......... .......... .......... .......... .......... .......... 511
ATGGCTCGAC CACTCCCCAG TTGAACCAGT TTTTGTTATT TGTGGAAATG ATAGATCGAT 16106
|| |
.......... .......... .......... .......... .......... ....ATGGTG 517
CAGATTCTGG AAACAAACCG TATAGCTTGT AGATTCAACC ATTCAAATCA AAAGTATGCT 16166
| || || | | | || | ||| ||||||
CGGA-CAAGG AGA-AGACTG TAT-GCTTGT TA........ .......... .......... 546
TTCAGTATTA CGTTTCAGGA GGAATGTGCT CATGTAACTT TAGTTGTATA TGGGAGAAAT 16226
.......... .......... .......... .......... .......... .......... 546
TTGCATAAGC ATTTTTTTTA TTGGAAACTG CATAAGCAAT TGATTGATCT AATAGCAAAC 16286
.......... .......... .......... .......... .......... .......... 546
CCCAATGATA TGTTTTTTTT TTGGCTCTGC ATAGCTGATG ACAGTTGTAT GAACCCTTGA 16346
.......... .......... .......... .......... .......... .......... 546
CCTGATTCTT ATTGGTCAGG CCCTTTTCGA TGATTTGCTA TTTTATCCCA ATTGTGGATT 16406
.......... .......... .......... .......... .......... .......... 546
GCGGAATATA TTTCTTCTTC GAATGTAATG ATGGTCTCGC CCTACCACAT GTGTGATAGC 16466
.......... .......... .......... .......... .......... .......... 546
CTATAAAAGT TCTACAACAC ATTATTGCAT TTCACTTAGG GCATGTTTAG ATTGAAGATG 16526
.......... .......... .......... .......... .......... .......... 546
AAAATTTTTT AGGTCACATC GGATATGTCG GAAGGATGTC GGGAGGGGTT TTTAAAAACT 16586
.......... .......... .......... .......... .......... .......... 546
AATAAAAAAA ACAAATTACA TAACTCGTCA GGAAACTGCA AGACGAATCT ATTAAGTATA 16646
.......... .......... .......... .......... .......... .......... 546
ATTAATCTAT TATTAGCACA TGTGGGTTAC TGTAGCACTT AAGGCTAATC ATGGACTAAC 16706
.......... .......... .......... .......... .......... .......... 546
TAGGCTTAAA AAATTCATCT CGCGATTTTC AACCAAACTG TGTAATTATT TTTTATCTAC 16766
.......... .......... .......... .......... .......... .......... 546
ATTTAATGTT TTATGTATGT GTCTAAAGAT TCAATGTGAT GGATGAAAAT TTTTTAGGTG 16826
.......... .......... .......... .......... .......... .......... 546
GGAACTAAAC AGGGCCTTAT ATTTTTTAAA AAAGATGTGC AAGTGTCAGG CCTTGTTTAG 16886
|| ||| ||||||||||
.......... .......... .......... .......... ...AGTAAGG CCTTGTTTAG 563
TTTCGAAAAC TTTTTGGTTT TTGAGACTGT AGCACTTTCG TTTTTATTTG ACAAATATTG 16946
| | ||| |||| |||| |||| || | |||| ||||| |||||||||| ||||| |||
ATCCAAAATT TTTTCTGTTT TTGACAC--T AGCAATTTCG TTTTTATTTG ACAAACCTTG 621
TCTAATCATA GAGTAACTAG 16966
|| |||||| ||||||||||
TCCAATCATG GAGTAACTAG 641
********************************************************************************
EST sequence 102 +strand (File: SBtuc02-10-21.8717+)
1 AAGCCTTGTT TAGATCCGGA AAATGTTTAA ATTATAACAC TATAGCATTT TCGTTTTTAT
61 TTGACAAAAG TTATCCAATC ATAGAGTAAT TTGACTTAAA AGATTCGTCT CGCGATTTAC
121 AGACAAATTA TGTAATTAGT TTTTATTTTT ATCTATATTT AATACTCTAT ATATATACCG
181 CAAGATTCGA TTTAACGAGA AATCTTGAAA ATGTTTTGGT TTTCTTAAAA AAAAACTAGA
241 CCCAAATATA AAAGTCCAAC CCCGGCGCGT GCACTGCAAA CTTGTCTTGG TTGTACCGCC
301 CCGGCCCCGC GCACCACGAC TCCGCCCACG CGGCCACGCC ACTCGACGCG ACCGAGACCA
361 GCCAGCGCGA ACTCCTCCCA ACTGCAACTC CTCCCAGACG CCCGCCGGCA GTTGGGCGCC
421 GCACAGCACA GCGAGCCTGC CAGTCAAACC GAGGCGGCGA CGAACGCAGG CAGGCAGCGC
481 GGGGGCGGGC CCGGCGGTGC CGGTGTGAAT GCGGGCGGCG CGATACCAGG CGCCGAGCGA
541 TCTGTCCCTG TGACGGCACG GGGCACGGCA GGATGGGCGA GGCGACGGGC CACGGTGACG
601 GCGTCGGCGT CGGCGTCGAC CTCTCGGGCG CCGAGATCCG CGGGGGCCTC GAGGATCGCA
661 ACCCGCCCAT CTTCCTCCCG CGCCAGCCCG CCGCGTCGCC GCTCCTCGCC CTCGACATCG
721 GAGGGACTCT GATCAAGCTG GTGTACACGG CGAGCTGCGG CGGCGGGGCC GACGGGGCGG
781 ACCTGCGCTT CGCCAAGTTC GAGAGGCGAC G
Predicted gene structure (within gDNA segment 16382 to 20633):
Exon 1 16874 17096 ( 223 n); cDNA 1 223 ( 223 n); score: 0.776
MATCH 21326110+ SBtuc02-10-21.8717+ 0.776 223 0.275 C
PGS_21326110+_SBtuc02-10-21.8717+ (16874 17096)
Alignment (genomic DNA sequence = upper lines):
AGGCCTTGTT TAGTTTCGAA AACTTTTTGG TTTTTGAGAC TGTAGCACTT TCGTTTTTAT 16933
| |||||||| ||| | || | || | ||| || | | || | ||||| || ||||||||||
AAGCCTTGTT TAGATCCGGA AAATGTTTAA ATTATAACAC TATAGCATTT TCGTTTTTAT 60
TTGACAAATA TTGTCTAATC ATAGAGTAAC TAGGTTTAAA AGATTTATCT CGCGATTTAT 16993
|||||||| || || |||| ||||||||| | | ||||| ||||| ||| |||||||||
TTGACAAAAG TTATCCAATC ATAGAGTAAT TTGACTTAAA AGATTCGTCT CGCGATTTAC 120
AGGTAAACTG TGCAATTAGT TTTTATTTTT GTATATATTT AATGCTTCAT GCATGTGTCG 17053
|| ||| | || ||||||| |||||||||| | ||||||| ||| || || || | ||
AGACAAATTA TGTAATTAGT TTTTATTTTT ATCTATATTT AATACTCTAT ATATATACCG 180
TAATATTTGA TGTGTTGAGA AATTTTGAAA AGTTTTTGGT TTT 17096
|| ||| || | | |||| ||| |||||| | ||||||| |||
CAAGATTCGA TTTAACGAGA AATCTTGAAA ATGTTTTGGT TTT 223
********************************************************************************
EST sequence 213 -strand (File: SBtuc02-10-21.506-)
1 AAATGAGTGT ACTTGCAGCC TGCATAATTT GCATTCAGTG CTAAATGTGA ATTCAATCAT
61 ACAATTGTGT TAATTAATCA TTGTGGTAAA AGTTTGGAGC CGTAAATTTA TACATTGATG
121 ATCTGCGTGC AATATGGAAT GAACGTGGTA ACATCACCTT GCACCACCTT TCGTCAGAAC
181 ATTTGCGCAA AACATTATAG TTAAGCACTA AAGATTTTCA AATGGCATCC TCAACGAGCA
241 TCTCATCTAC TTGGTGATGA CACCAGATCA AGATTCTTCT ATACAGACCT TACTATCTGG
301 GTGACCACTG ACCAGGGATC AGGGCTATCA CCTTTGTTTA TATACAACAA GGACACTTTT
361 CAACCTTCAC GATTTCCAAC TGCAGGTATA GAATCCTGGA TTGCTTGAGC GAACGTAGCA
421 ATCTTATAGG TAAAAAACCC AACAAGCATT GGTATTAACT GCAGTTGCAT GAAACCATAA
481 TCCGGAACTA ATATCCCATT CCATCTGTTA TACATCATCA CAAGTACCAC CGGAATAAGC
541 AACCTTGGTT GTGCAGCAGC ACTCTTGACA GTTTCTCCAG TTCCACTTGC TGGGTTCTCT
601 TCATTGGAAA CAAGTTCTAC AAGCTGCCTA GCAGCTATTT TAGATCTGTC AAATCCTCAT
661 GTAGAAAACA GAAGAGTGGA CATTCTATGA CAAATAAGTA ACTATATTTT TTCAGATAAT
721 TATTTACTAA GGGGATTGTC TGAACATTAT ATTTAGGACC TGTTTAGGCC TTGTTTAGTT
781 CCGAAAAAAT TTCGATTTCG CTACTGTAGC ATTTTCGTTT TTATTTGACA AATATTGTTC
841 AATCATGAAC TAACTAGAAT CAAAAGATTC ATCTCGCGAT TTACAGACAA TCTGTGTAAT
901 TAGTTTTTGT TTTCCTCTAT ATTTAGTGTT TCATGCATAT GCCGCAAGAT TCGATTTGAC
961 GGGGAATCTT GAAAACTTTT CGGATTTCGG GGTGAACTAA TCCCTCGTGC
Predicted gene structure (within gDNA segment 12744 to 17927):
Exon 1 13310 13317 ( 8 n); cDNA 698 705 ( 8 n); score: 0.625
Intron 1 13318 14109 ( 792 n); Pd: 0.789 (s: 0), Pa: 0.989 (s: 0)
Exon 2 14110 14118 ( 9 n); cDNA 706 714 ( 9 n); score: 0.889
Intron 2 14119 14253 ( 135 n); Pd: 0.000 (s: 0), Pa: 0.830 (s: 0)
Exon 3 14254 14274 ( 21 n); cDNA 715 735 ( 21 n); score: 0.476
Intron 3 14275 15883 (1609 n); Pd: 0.486 (s: 0), Pa: 0.361 (s: 0)
Exon 4 15884 15903 ( 20 n); cDNA 736 756 ( 21 n); score: 0.600
Intron 4 15904 16505 ( 602 n); Pd: 0.991 (s: 0), Pa: 0.758 (s: 0)
Exon 5 16506 16516 ( 11 n); cDNA 757 767 ( 11 n); score: 0.818
Intron 5 16517 16875 ( 359 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80)
Exon 6 16876 17104 ( 229 n); cDNA 768 995 ( 228 n); score: 0.803
MATCH 21326110+ SBtuc02-10-21.506- 0.803 298 0.295 C
PGS_21326110+_SBtuc02-10-21.506- (13310 13317,14110 14118,14254 14274,15884 15903,16506 16516,16876 17104)
Alignment (genomic DNA sequence = upper lines):
GTTGCTAGGT GGGGCTTGTG CTGTTTTCTA CTTAGTTGCA ACTTGTAACT CACTATTGCT 13369
|| |||
GTAACTAT.. .......... .......... .......... .......... .......... 705
CTGTCCTGCA GGTTGCTAAA ATTAAGCAGA CTATGGTAGG GGACTCCAAA GATGGTCCTG 13429
.......... .......... .......... .......... .......... .......... 705
CCAGGCCTGT GATTCGCACA TTTTATGATC ACACACAGGT GAGCATGTAT TGCTCATATA 13489
.......... .......... .......... .......... .......... .......... 705
TGACAGTTTA TTTACTCTTC AAGGTCGTGA GACTCTTTTC AACACTTCCA CAAGATTGCC 13549
.......... .......... .......... .......... .......... .......... 705
TCCGAGTTAG GTCTCCTGCA GTATTTTTTT TCCTTTAATA TGCGGAGAGC TGCATATCAT 13609
.......... .......... .......... .......... .......... .......... 705
TGCATTATAG AAAGACTGAA ATACATGGGT AGATCAAATC CACCTGCCAC CACAGACCAC 13669
.......... .......... .......... .......... .......... .......... 705
ACTTATATAC ACACGCTCAA CTCACGTTTA GCACACTGGA TGCACACCTA GCAGCTGCAA 13729
.......... .......... .......... .......... .......... .......... 705
TTTGTAGTTA GATATTTGCT TACTGAGCTG TGTGGAGCAT TGACATGATA TTCAATTTTT 13789
.......... .......... .......... .......... .......... .......... 705
TAATAAACAA CATTTTTTTC CATTTTCACT AGTTTCTACT TCATTTCCCA TTGCTCAAAT 13849
.......... .......... .......... .......... .......... .......... 705
TTCCACTGTG CTCGTAAACA TGATTGATTT CTTGCAGGCC ATCAATGATC TGGATTTTCA 13909
.......... .......... .......... .......... .......... .......... 705
TCCTGAGAGT CCAATACTGA TATCAGCTGC AAAAGACAAT ACAATAAAGT ATGCTTATCC 13969
.......... .......... .......... .......... .......... .......... 705
TTGATGTCTA CACTCCGTGC TGTTAAATTG TCTATTTGAA GTGCTCATAC TAGGATTAAG 14029
.......... .......... .......... .......... .......... .......... 705
CATGATTTTT TAGGAATTTT TTGCGGTATT AATTGCTATC TGTGTTATTG TTTTGTACAT 14089
.......... .......... .......... .......... .......... .......... 705
GAAAAAATTT TGCTCAACAG ATTTTTTGAC TTCTCAAAGA CCAATGCGAG GAAAGCGTTC 14149
||||||| |
.......... .......... ATTTTTTCA. .......... .......... .......... 714
AGAGTTATTC AGGTTGTAAA TTCTAGCAAT CCAATCTCTC TATATATCAT GTAAAATGGT 14209
.......... .......... .......... .......... .......... .......... 714
GTGTTCATTG CATTTAACCA GGCTCATTTG TTAATGCTTG GCAGGATACT CATAATGTTA 14269
|||| | || | |
.......... .......... .......... .......... ....GATAAT TATTTACTAA 730
GATCTGTATG TTTTCATCCT TGTGGGGATT ACCTTTTAGC AGGTACTATG ATCTTTTCAC 14329
|
GGGGA..... .......... .......... .......... .......... .......... 735
TAAATTTAAA TTTGATTTCT AGTTCTGCTG TGATTAACTG ATTCTTGATG TCTGATATCA 14389
.......... .......... .......... .......... .......... .......... 735
GTTTGATATG CTCTGATTTT TATGCATTAT AAGTTGTTAA CATGTTTTCA GTTGTTATCT 14449
.......... .......... .......... .......... .......... .......... 735
GTAAAGTAAT TTAATCATTT CACCAAAACA ATTTGATATT TGGGCTTAAG AATTTGGATT 14509
.......... .......... .......... .......... .......... .......... 735
TCGTTCCTGG ATCAACAGTT TCTGTCTCGT GGGCATTTGA AAAATACTGC AAGCATATCG 14569
.......... .......... .......... .......... .......... .......... 735
TATGGAATTT TCTTCTTACA TATAGTCAAA TATTAACATT CAAATATGTA TTTTTTTTAA 14629
.......... .......... .......... .......... .......... .......... 735
AAAAACTCAT TTTCATATAT TTGGAAGCAA GTGACACTGA TAAAATTATT TGCAGGGACT 14689
.......... .......... .......... .......... .......... .......... 735
GATCACCCAG TTGCTCATTT ATATGATATA AATACTTTTA CATGCTACTT ATCAGCAAAT 14749
.......... .......... .......... .......... .......... .......... 735
GCACAGGATT CTAGTTCTCC CATTAACCAG GTAGCTTTTC TCTTTCCTTC TGATTCACAA 14809
.......... .......... .......... .......... .......... .......... 735
GCATTAGATT GCATTGGTTA TATTCTCATC AAAGTTCTCC GCCAGCCATG CTTACTGATG 14869
.......... .......... .......... .......... .......... .......... 735
TTGCTGCCAG GTACGCTACT CCTGTACTGG GAGCTTGTAT GTGACTGCTT CTAAAGATGG 14929
.......... .......... .......... .......... .......... .......... 735
TTCTCTGCGC ATTTGGGATG GAGTATCTGC TGAATGTGTT CGACCTATTA TTGGAGCACA 14989
.......... .......... .......... .......... .......... .......... 735
TGGATCTGCA GAAGCTACTA GCGCAATTTT CACCAGAGAT GAGAGGTAAG CGAGCTACCA 15049
.......... .......... .......... .......... .......... .......... 735
GCATGTCTAA GGTGCTCTTC CCTCAAGATA AAATCCAGTC ATTGTTTGGT TTGAAGAACA 15109
.......... .......... .......... .......... .......... .......... 735
GAGAGAAAGG CATATGCTGT ATGATTCAAG ACAGTAACTA CTTCAAACCC TGTTTGGAAT 15169
.......... .......... .......... .......... .......... .......... 735
GTGGGAATCT TGTAGTGATT CTGAATGATT TATAACATGT CCTGGATAAT TTCCTGTGTT 15229
.......... .......... .......... .......... .......... .......... 735
TCAGACGTGT CGTAACTTTA TAACACGAAT AACTCTTTCT CCTTTACCCT ACTATTTCAC 15289
.......... .......... .......... .......... .......... .......... 735
CACTAAACAA CTAACTTGCC TATAAACACT TTTTAGACTT CTTCTGAAAG GCCTAGTGTT 15349
.......... .......... .......... .......... .......... .......... 735
TATGTGGTTA TATGCAGCGT GAATGCACTT GCATATAAGA TTGATCTAAA AAATTGATGT 15409
.......... .......... .......... .......... .......... .......... 735
AGTGAACTTT GACTACCCGA AGTATATGCT TAGATAGTTC ATGGATTTCT TTCATAAAAC 15469
.......... .......... .......... .......... .......... .......... 735
TGCACACTGT ATTCTGGTTA TCTGTTATGA AGTTTACTAC GTTCTTTCAG GTATGTCCTA 15529
.......... .......... .......... .......... .......... .......... 735
TCTTGTGGGA AAGATTCTTG TGTCAAGTTA TGGGAAGTTG GCACTGGACG ACTTGTGAAG 15589
.......... .......... .......... .......... .......... .......... 735
CAATATGCAG GAGCCATTCG CAGACAATTT CGTTGTCAGG TTAGTTTCTC TGTGTTTCTA 15649
.......... .......... .......... .......... .......... .......... 735
TAAGATTATT ATTTTTTCCT GATTTAAATT TACTCGTGTG CCATATATAT TATTTTTACC 15709
.......... .......... .......... .......... .......... .......... 735
CAAAATTTTA GGAAACAAAA TATTGCAATT CTTTAATTTG AAAATAGGCT GGTTTGAGCT 15769
.......... .......... .......... .......... .......... .......... 735
TGCAGCTTAG GATAACAACA TACCTAACCT TGCTATGATA GACAATAAAT ATGATAATAA 15829
.......... .......... .......... .......... .......... .......... 735
CTGTTCTTAC TATCCAGGCT GTCTTCAATG AAACCGAAGA ATTTGTTCTA TCAGTTG-AT 15888
||| |
.......... .......... .......... .......... .......... ....TTGTCT 741
GAACAAAACA ATGAGGTAAA TTCCAAATTG AGAACAGTAT ATATATTTGT ATTTCAGCAA 15948
||||| | | | ||
GAACATTATA TTTAG..... .......... .......... .......... .......... 756
GCTTAACTAT GATACGTCAC TCTTCAGGTT GTCGTCTGGG ATGCACTTAC TGCAGAAAAG 16008
.......... .......... .......... .......... .......... .......... 756
GTTGCAAGAT TGCCCTCTGG CAGCACTGGT GCTCCCAGAT GGCTCGACCA CTCCCCAGTT 16068
.......... .......... .......... .......... .......... .......... 756
GAACCAGTTT TTGTTATTTG TGGAAATGAT AGATCGATCA GATTCTGGAA ACAAACCGTA 16128
.......... .......... .......... .......... .......... .......... 756
TAGCTTGTAG ATTCAACCAT TCAAATCAAA AGTATGCTTT CAGTATTACG TTTCAGGAGG 16188
.......... .......... .......... .......... .......... .......... 756
AATGTGCTCA TGTAACTTTA GTTGTATATG GGAGAAATTT GCATAAGCAT TTTTTTTATT 16248
.......... .......... .......... .......... .......... .......... 756
GGAAACTGCA TAAGCAATTG ATTGATCTAA TAGCAAACCC CAATGATATG TTTTTTTTTT 16308
.......... .......... .......... .......... .......... .......... 756
GGCTCTGCAT AGCTGATGAC AGTTGTATGA ACCCTTGACC TGATTCTTAT TGGTCAGGCC 16368
.......... .......... .......... .......... .......... .......... 756
CTTTTCGATG ATTTGCTATT TTATCCCAAT TGTGGATTGC GGAATATATT TCTTCTTCGA 16428
.......... .......... .......... .......... .......... .......... 756
ATGTAATGAT GGTCTCGCCC TACCACATGT GTGATAGCCT ATAAAAGTTC TACAACACAT 16488
.......... .......... .......... .......... .......... .......... 756
TATTGCATTT CACTTAGGGC ATGTTTAGAT TGAAGATGAA AATTTTTTAG GTCACATCGG 16548
| | |||||||
.......... .......GAC CTGTTTAG.. .......... .......... .......... 767
ATATGTCGGA AGGATGTCGG GAGGGGTTTT TAAAAACTAA TAAAAAAAAC AAATTACATA 16608
.......... .......... .......... .......... .......... .......... 767
ACTCGTCAGG AAACTGCAAG ACGAATCTAT TAAGTATAAT TAATCTATTA TTAGCACATG 16668
.......... .......... .......... .......... .......... .......... 767
TGGGTTACTG TAGCACTTAA GGCTAATCAT GGACTAACTA GGCTTAAAAA ATTCATCTCG 16728
.......... .......... .......... .......... .......... .......... 767
CGATTTTCAA CCAAACTGTG TAATTATTTT TTATCTACAT TTAATGTTTT ATGTATGTGT 16788
.......... .......... .......... .......... .......... .......... 767
CTAAAGATTC AATGTGATGG ATGAAAATTT TTTAGGTGGG AACTAAACAG GGCCTTATAT 16848
.......... .......... .......... .......... .......... .......... 767
TTTTTAAAAA AGATGTGCAA GTGTCAGGCC TTGTTTAGTT TCGAAAACTT TTTGGTTTTT 16908
||| |||||||||| |||||| ||| | |||
.......... .......... .......GCC TTGTTTAGTT CCGAAAA-AA TTTCGATTTC 799
GAGACTGTAG CACTTTCGTT TTTATTTGAC AAATATTGTC TAATCATAGA GTAACTAGGT 16968
| ||||||| || ||||||| |||||||||| ||||||||| |||||| | |||||||
GCTACTGTAG CATTTTCGTT TTTATTTGAC AAATATTGTT CAATCATGAA CTAACTAGAA 859
TTAAAAGATT TATCTCGCGA TTTATAGGTA AACTGTGCAA TTAGTTTTTA TTTTTGTATA 17028
| |||||||| ||||||||| |||| || | | ||||| || ||||||||| |||| | ||
TCAAAAGATT CATCTCGCGA TTTACAGACA ATCTGTGTAA TTAGTTTTTG TTTTCCTCTA 919
TATTTAATGC TTCATGCATG TGTCGTAATA TTTGATGTGT TGAGAAATTT TGAAAAGTTT 17088
|||||| || ||||||||| || || || | || ||| || | | ||| | |||||| |||
TATTTAGTGT TTCATGCATA TGCCGCAAGA TTCGATTTGA CGGGGAATCT TGAAAACTTT 979
TTGGTTTTTG GGGTGA 17104
| || ||| | ||||||
TCGGATTTCG GGGTGA 995
********************************************************************************
EST sequence 109 +strand (File: TAtuc02-12-22.10307+)
1 TCGGCACGAG GAACTGGGTA CCATCCTCAT CCAGAAGAAC ATACGTTGTG CCACACTTCA
61 GATATCCTAG CGGGAGTACT GGTTTCCGTA GATAAGACAG TCTGGTTGAT GCCAGCTGCA
121 TTTTGATAAT TGCATTGGTG AGGATGCGAT GGAATACTGT GCTACCATTG ACTTGATTGA
181 GTGACCACTG CGATTGCCAC GTGAGGGCCT ATGCATAAGA ATATAAGATG GATAAGAAAC
241 CAATATCAGG GCTTTGTATG CTTCAAACGG GAAGGTTAGG AAATATTACC GTCTTTTTGT
301 CGAATGAGTT CATAGCTGGA ATTGTCCTGC AAGATTGAAG CGAGATATTC CCAGAAGGGA
361 CATAGGTTTC TGAAATTTGA GCTAGGCCTT GTTTAGTTCC GAAAAAATTT CGGATTTCGG
421 CACTGTAGCA CTTTCGTTTG TTTGTGGTAA ATATTATCCA ATTATAGACT AACTATGGTC
481 AAAAGATTCG TCTCGCGATT TAGAGTCAAA CTGTGTGATT AGTTTTTGTT TTCGTCTATA
541 TTTAATGCTT CGTGCATATG CCGCAAGATT CGATGTGACA TGGAATCTTG AAAACTTTTT
601 GGG
Predicted gene structure (within gDNA segment 14659 to 17606):
Exon 1 14855 14879 ( 25 n); cDNA 360 385 ( 26 n); score: 0.560
Intron 1 14880 16875 (1996 n); Pd: 0.978 (s: 0), Pa: 0.000 (s: 0.84)
Exon 2 16876 17093 ( 218 n); cDNA 386 603 ( 218 n); score: 0.798
MATCH 21326110+ TAtuc02-12-22.10307+ 0.798 243 0.403 C
PGS_21326110+_TAtuc02-12-22.10307+ (14855 14879,16876 17093)
Alignment (genomic DNA sequence = upper lines):
CCAT-GCTTA CTGATGTTGC TGCCAGGTAC GCTACTCCTG TACTGGGAGC TTGTATGTGA 14913
||| | || |||| || || ||
ACATAGGTTT CTGAAATTTG AGCTAG.... .......... .......... .......... 385
CTGCTTCTAA AGATGGTTCT CTGCGCATTT GGGATGGAGT ATCTGCTGAA TGTGTTCGAC 14973
.......... .......... .......... .......... .......... .......... 385
CTATTATTGG AGCACATGGA TCTGCAGAAG CTACTAGCGC AATTTTCACC AGAGATGAGA 15033
.......... .......... .......... .......... .......... .......... 385
GGTAAGCGAG CTACCAGCAT GTCTAAGGTG CTCTTCCCTC AAGATAAAAT CCAGTCATTG 15093
.......... .......... .......... .......... .......... .......... 385
TTTGGTTTGA AGAACAGAGA GAAAGGCATA TGCTGTATGA TTCAAGACAG TAACTACTTC 15153
.......... .......... .......... .......... .......... .......... 385
AAACCCTGTT TGGAATGTGG GAATCTTGTA GTGATTCTGA ATGATTTATA ACATGTCCTG 15213
.......... .......... .......... .......... .......... .......... 385
GATAATTTCC TGTGTTTCAG ACGTGTCGTA ACTTTATAAC ACGAATAACT CTTTCTCCTT 15273
.......... .......... .......... .......... .......... .......... 385
TACCCTACTA TTTCACCACT AAACAACTAA CTTGCCTATA AACACTTTTT AGACTTCTTC 15333
.......... .......... .......... .......... .......... .......... 385
TGAAAGGCCT AGTGTTTATG TGGTTATATG CAGCGTGAAT GCACTTGCAT ATAAGATTGA 15393
.......... .......... .......... .......... .......... .......... 385
TCTAAAAAAT TGATGTAGTG AACTTTGACT ACCCGAAGTA TATGCTTAGA TAGTTCATGG 15453
.......... .......... .......... .......... .......... .......... 385
ATTTCTTTCA TAAAACTGCA CACTGTATTC TGGTTATCTG TTATGAAGTT TACTACGTTC 15513
.......... .......... .......... .......... .......... .......... 385
TTTCAGGTAT GTCCTATCTT GTGGGAAAGA TTCTTGTGTC AAGTTATGGG AAGTTGGCAC 15573
.......... .......... .......... .......... .......... .......... 385
TGGACGACTT GTGAAGCAAT ATGCAGGAGC CATTCGCAGA CAATTTCGTT GTCAGGTTAG 15633
.......... .......... .......... .......... .......... .......... 385
TTTCTCTGTG TTTCTATAAG ATTATTATTT TTTCCTGATT TAAATTTACT CGTGTGCCAT 15693
.......... .......... .......... .......... .......... .......... 385
ATATATTATT TTTACCCAAA ATTTTAGGAA ACAAAATATT GCAATTCTTT AATTTGAAAA 15753
.......... .......... .......... .......... .......... .......... 385
TAGGCTGGTT TGAGCTTGCA GCTTAGGATA ACAACATACC TAACCTTGCT ATGATAGACA 15813
.......... .......... .......... .......... .......... .......... 385
ATAAATATGA TAATAACTGT TCTTACTATC CAGGCTGTCT TCAATGAAAC CGAAGAATTT 15873
.......... .......... .......... .......... .......... .......... 385
GTTCTATCAG TTGATGAACA AAACAATGAG GTAAATTCCA AATTGAGAAC AGTATATATA 15933
.......... .......... .......... .......... .......... .......... 385
TTTGTATTTC AGCAAGCTTA ACTATGATAC GTCACTCTTC AGGTTGTCGT CTGGGATGCA 15993
.......... .......... .......... .......... .......... .......... 385
CTTACTGCAG AAAAGGTTGC AAGATTGCCC TCTGGCAGCA CTGGTGCTCC CAGATGGCTC 16053
.......... .......... .......... .......... .......... .......... 385
GACCACTCCC CAGTTGAACC AGTTTTTGTT ATTTGTGGAA ATGATAGATC GATCAGATTC 16113
.......... .......... .......... .......... .......... .......... 385
TGGAAACAAA CCGTATAGCT TGTAGATTCA ACCATTCAAA TCAAAAGTAT GCTTTCAGTA 16173
.......... .......... .......... .......... .......... .......... 385
TTACGTTTCA GGAGGAATGT GCTCATGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA 16233
.......... .......... .......... .......... .......... .......... 385
AGCATTTTTT TTATTGGAAA CTGCATAAGC AATTGATTGA TCTAATAGCA AACCCCAATG 16293
.......... .......... .......... .......... .......... .......... 385
ATATGTTTTT TTTTTGGCTC TGCATAGCTG ATGACAGTTG TATGAACCCT TGACCTGATT 16353
.......... .......... .......... .......... .......... .......... 385
CTTATTGGTC AGGCCCTTTT CGATGATTTG CTATTTTATC CCAATTGTGG ATTGCGGAAT 16413
.......... .......... .......... .......... .......... .......... 385
ATATTTCTTC TTCGAATGTA ATGATGGTCT CGCCCTACCA CATGTGTGAT AGCCTATAAA 16473
.......... .......... .......... .......... .......... .......... 385
AGTTCTACAA CACATTATTG CATTTCACTT AGGGCATGTT TAGATTGAAG ATGAAAATTT 16533
.......... .......... .......... .......... .......... .......... 385
TTTAGGTCAC ATCGGATATG TCGGAAGGAT GTCGGGAGGG GTTTTTAAAA ACTAATAAAA 16593
.......... .......... .......... .......... .......... .......... 385
AAAACAAATT ACATAACTCG TCAGGAAACT GCAAGACGAA TCTATTAAGT ATAATTAATC 16653
.......... .......... .......... .......... .......... .......... 385
TATTATTAGC ACATGTGGGT TACTGTAGCA CTTAAGGCTA ATCATGGACT AACTAGGCTT 16713
.......... .......... .......... .......... .......... .......... 385
AAAAAATTCA TCTCGCGATT TTCAACCAAA CTGTGTAATT ATTTTTTATC TACATTTAAT 16773
.......... .......... .......... .......... .......... .......... 385
GTTTTATGTA TGTGTCTAAA GATTCAATGT GATGGATGAA AATTTTTTAG GTGGGAACTA 16833
.......... .......... .......... .......... .......... .......... 385
AACAGGGCCT TATATTTTTT AAAAAAGATG TGCAAGTGTC AGGCCTTGTT TAGTTTCGAA 16893
|||||||| ||||| ||||
.......... .......... .......... .......... ..GCCTTGTT TAGTTCCGAA 403
AACTTTTTGG TTTTTGAGAC TGTAGCACTT TCGTTTTTAT TTGACAAATA TTGTCTAATC 16953
|| ||| || ||| | || |||||||||| |||||| | | || ||||| || || |||
AAAATTTCGG ATTTCGGCAC TGTAGCACTT TCGTTTGTTT GTGGTAAATA TTATCCAATT 463
ATAGAGTAAC TAGGTTTAAA AGATTTATCT CGCGATTTAT AGGTAAACTG TGCAATTAGT 17013
||||| |||| || | | ||| ||||| ||| ||||||||| || |||||| || ||||||
ATAGACTAAC TATGGTCAAA AGATTCGTCT CGCGATTTAG AGTCAAACTG TGTGATTAGT 523
TTTTATTTTT GTATATATTT AATGCTTCAT GCATGTGTCG TAATATTTGA TGTGTTGAGA 17073
|||| |||| || ||||||| |||||||| | |||| || || || ||| || |||| |
TTTTGTTTTC GTCTATATTT AATGCTTCGT GCATATGCCG CAAGATTCGA TGTGACATGG 583
AATTTTGAAA AGTTTTTGGT 17093
||| |||||| | |||||||
AATCTTGAAA ACTTTTTGGG 603
********************************************************************************
EST sequence 262 -strand (File: SBtuc02-10-21.8114-)
1 GGTCTGCACC AGCACCAACC ACAACGAGAT CAGGGCCTTG TTTAGTTCTG AAAAATTTTA
61 GGAAATGGAC ACCGTAGCAT TTTCGTTTGT ATTTGACAAA TATTGTCCAA TCATGTACTA
121 ACTAGGTTCA AAAGATTCGT CTCGTTAATT TCGACCAAAC TATGCAATTA GTTTTTATTT
181 TCGTCTATAT TTAATACTCC ATGCATGCGT CTAAAGATTC GATGTGACAG GGAATGTGAA
241 AAATTTTGCA AAATTTTCTG GGAAGTAAAC AGAAGAGAAA AAAAAATTCA ATTGCAGTGG
301 TAGTGGTGAG CAGAGCTCTT GTATATAAGC CAAAGAACAG CTCAGCGGAT GGTGACTTCA
361 GAGATAAGTG ATAGGATAAG TGAGTAGTGA CGAGCCACCA CAAACAGTAT CCCGGGATAC
421 CGTCCCCTCC TAGTGCAGGG AATCTTTTTA TCTTACCCTG GCTTTGCTCC TGAGATCCAT
481 GCCAGATCCA CCGATCCATA TGTACTCGGC GATGATCTTC TCGGTGGTGT CCGAGAGGCT
541 GAGGTTGACG AGGTCGGTGA GGGAGGCCAT GGCCGGCGGC GGCTGGGAAG GACCCAAAGG
601 AGGAAGAAGA GGGAGGAGCC TCGTGC
Predicted gene structure (within gDNA segment 16405 to 20279):
Exon 1 16876 17091 ( 216 n); cDNA 35 248 ( 214 n); score: 0.782
MATCH 21326110+ SBtuc02-10-21.8114- 0.782 216 0.345 C
PGS_21326110+_SBtuc02-10-21.8114- (16876 17091)
Alignment (genomic DNA sequence = upper lines):
GCCTTGTTTA GTTTCGAAAA CTTTTTGGTT TTTGAGACTG TAGCACTTTC GTTTTTATTT 16935
|||||||||| ||| ||||| |||| || | || || | ||||| |||| |||| |||||
GCCTTGTTTA GTTCTGAAAA ATTTTAGGAA ATGGACACCG TAGCATTTTC GTTTGTATTT 94
GACAAATATT GTCTAATCAT AGAGTAACTA GGTTTAAAAG ATTTATCTCG CGATTTATAG 16995
|||||||||| ||| |||||| | |||||| |||| ||||| ||| ||||| | ||
GACAAATATT GTCCAATCAT GTACTAACTA GGTTCAAAAG ATTCGTCTCG TTAATTTCGA 154
GTAAACTGTG CAATTAGTTT TTATTTTTGT ATATATTTAA TGCTTCATGC ATGTGTCGTA 17055
||||| || |||||||||| ||||||| || ||||||||| | || ||||| ||| ||| |
CCAAACTATG CAATTAGTTT TTATTTTCGT CTATATTTAA TACTCCATGC ATGCGTCTAA 214
ATATTTGATG TGTTGAGAAA TTTTGAAAAG TTTTTG 17091
| ||| |||| || || | | |||||| |||||
AGATTCGATG TG-ACAGGGA ATGTGAAAA- ATTTTG 248
********************************************************************************
EST sequence 38 +strand (File: 8548754+)
1 GTCATGAATA CCAGACATTT TGGACAAAGA AAACAAAACG TCATGTATTC ATGACTGGAT
61 GCAGCGGCGG ACCCAGAAAT GGACCAAGAG GGGGGCTAAA TAACATAGGC TAAATTTTTT
121 TTTGCTCGCT CAATCCAGTA CACTAAGGCC TTGTTTAGTT CTAATTTTTT TTGCAAAATA
181 GGAATAGTAG CATTTTGGTT TGTATTTGAC AAATATTGTC TGATCATGGA CTAACTAGGC
241 TCAAAAGATT CATCTCGCGG TAAACTGTGT AATTAGTTAT TTTTTTATTT ATATTTAGTG
301 CTTCATGCAT GTGCCGCAAG ATTCAATGTG ATGGGGAATC TGAGAAATTT TGCAAAATAT
361 TTTGGGAACT AAACAACGCT
Predicted gene structure (within gDNA segment 15849 to 18049):
Exon 1 16101 16125 ( 25 n); cDNA 125 147 ( 23 n); score: 0.600
Intron 1 16126 16875 ( 750 n); Pd: 0.714 (s: 0), Pa: 0.000 (s: 0.67)
Exon 2 16876 17066 ( 191 n); cDNA 148 329 ( 182 n); score: 0.775
MATCH 21326110+ 8548754+ 0.775 216 0.568 C
PGS_21326110+_8548754+ (16101 16125,16876 17066)
Alignment (genomic DNA sequence = upper lines):
ATCGATCAGA TTCTGGAAAC AAACCGTATA GCTTGTAGAT TCAACCATTC AAATCAAAAG 16160
||| ||| | | | | | || ||
CTCGCTCA-A TCCAGTACAC TAA-G..... .......... .......... .......... 147
TATGCTTTCA GTATTACGTT TCAGGAGGAA TGTGCTCATG TAACTTTAGT TGTATATGGG 16220
.......... .......... .......... .......... .......... .......... 147
AGAAATTTGC ATAAGCATTT TTTTTATTGG AAACTGCATA AGCAATTGAT TGATCTAATA 16280
.......... .......... .......... .......... .......... .......... 147
GCAAACCCCA ATGATATGTT TTTTTTTTGG CTCTGCATAG CTGATGACAG TTGTATGAAC 16340
.......... .......... .......... .......... .......... .......... 147
CCTTGACCTG ATTCTTATTG GTCAGGCCCT TTTCGATGAT TTGCTATTTT ATCCCAATTG 16400
.......... .......... .......... .......... .......... .......... 147
TGGATTGCGG AATATATTTC TTCTTCGAAT GTAATGATGG TCTCGCCCTA CCACATGTGT 16460
.......... .......... .......... .......... .......... .......... 147
GATAGCCTAT AAAAGTTCTA CAACACATTA TTGCATTTCA CTTAGGGCAT GTTTAGATTG 16520
.......... .......... .......... .......... .......... .......... 147
AAGATGAAAA TTTTTTAGGT CACATCGGAT ATGTCGGAAG GATGTCGGGA GGGGTTTTTA 16580
.......... .......... .......... .......... .......... .......... 147
AAAACTAATA AAAAAAACAA ATTACATAAC TCGTCAGGAA ACTGCAAGAC GAATCTATTA 16640
.......... .......... .......... .......... .......... .......... 147
AGTATAATTA ATCTATTATT AGCACATGTG GGTTACTGTA GCACTTAAGG CTAATCATGG 16700
.......... .......... .......... .......... .......... .......... 147
ACTAACTAGG CTTAAAAAAT TCATCTCGCG ATTTTCAACC AAACTGTGTA ATTATTTTTT 16760
.......... .......... .......... .......... .......... .......... 147
ATCTACATTT AATGTTTTAT GTATGTGTCT AAAGATTCAA TGTGATGGAT GAAAATTTTT 16820
.......... .......... .......... .......... .......... .......... 147
TAGGTGGGAA CTAAACAGGG CCTTATATTT TTTAAAAAAG ATGTGCAAGT GTCAGGCCTT 16880
|||||
.......... .......... .......... .......... .......... .....GCCTT 152
GTTTAGTTTC GAAAACTTTT TGGTTTTTGA GACT-GTAGC ACTTTCGTTT TTATTTGACA 16939
|||||||| | || |||| || | || | ||||| | ||| |||| |||||||||
GTTTAGTT-C TAATTTTTTT TGCAAAATAG GAATAGTAGC ATTTTGGTTT GTATTTGACA 211
AATATTGTCT AATCATAGAG TAACTAGGTT TAAAAGATTT ATCTCGCGAT TTATAGGTAA 16999
|||||||||| ||||| || |||||||| | |||||||| |||||||| | |||
AATATTGTCT GATCATGGAC TAACTAGGCT CAAAAGATTC ATCTCGCG-- -----G-TAA 263
ACTGTGCAAT TAGTTTTTAT TTTTGTATAT ATTTAATGCT TCATGCATGT GTCGTAATAT 17059
|||||| ||| ||||| || | |||| | ||| ||||| |||| |||||||||| | || || ||
ACTGTGTAAT TAGTTATT-T TTTTATTTAT ATTTAGTGCT TCATGCATGT GCCGCAAGAT 322
TTGATGT 17066
| ||||
TCAATGT 329
********************************************************************************
EST sequence 71 +strand (File: 14514528+)
1 GCACGAGGGT GGTCAGTCAT CGCCAGAACA GGAAGAGATC TAAGAGTTTC AAATATGGAA
61 ATTCTGGTTG GGTTGGGCTT GGGCCTTCAT GGATCGGAAA TTTCAGAGAG GACGGAGTTG
121 CCTAGTTTTG AAGAAGTCGC TAATAAACAA TTTGACTGCT GGCCAATGTA AGCTGCACTG
181 CAAATTGCAA GATTTTCAAT CTTTGTGTGC CATATATAAT GCTACGTATA AGATACGAAG
241 AGTGTCAGCT GAGCGAATAA GTTGACGTGC GCCGCACACA CCCCACCCCT ATGGCCTATG
301 GGCTATGGCC TTGTTTAGTT GGGAAAATTT GTTGGTTTTG AATAGTGTAG CATTTTCGTT
361 TGTATTTGGT TATTATTGTT CAATTATGGA CTAATTAGGC TTAAAAGATT TGTCTCACAA
421 ACAAACTGTG CAATTAGTTA TTCTTTTTAT CTATATTTAA TGCTTCATGC ATATGTTCAA
481 AGATTTGATC TAAAGATTTG ATGTGACGAA NAA
Predicted gene structure (within gDNA segment 14365 to 17557):
Exon 1 16876 17064 ( 189 n); cDNA 308 489 ( 182 n); score: 0.788
MATCH 21326110+ 14514528+ 0.788 189 0.368 C
PGS_21326110+_14514528+ (16876 17064)
Alignment (genomic DNA sequence = upper lines):
GCCTTGTTTA GTTTCGAAAA CTTTTTGGTT TTTGAGACTG TAGCACTTTC GTTTTTATTT 16935
|||||||||| ||| ||||| || |||||| || | | || ||||| |||| |||| |||||
GCCTTGTTTA GTTGGGAAAA TTTGTTGGTT TTGAATAGTG TAGCATTTTC GTTTGTATTT 367
GACAAATATT GTCTAATCAT AGAGTAACTA GGTTTAAAAG ATTTATCTCG CGATTTATAG 16995
| | |||| || ||| || || ||| || || ||||||| |||| |||| | | | |
GGTTATTATT GTTCAATTAT GGACTAATTA GGCTTAAAAG ATTTGTCTCA C-A---A-A- 421
GTAAACTGTG CAATTAGTTT TTATTTTTGT ATATATTTAA TGCTTCATGC ATGTGTCGTA 17055
|||||||| ||||||||| || ||||| | ||||||||| |||||||||| || ||| |
-CAAACTGTG CAATTAGTTA TTCTTTTTAT CTATATTTAA TGCTTCATGC ATATGTTCAA 480
ATATTTGAT 17064
| |||||||
AGATTTGAT 489
********************************************************************************
EST sequence 176 +strand (File: 11996680+)
1 AAGCTGCAGC GAAAGAAGCA GAGTCTGCAG AAGCAGAAGC CCAAGCTGCG CAAGCATTTG
61 CTGAAGCAGC ATTTTTGACA TTGAAGAACA GAAATGCTGC AAAACTGATG GCCTAAGGTT
121 GATGCTACTC GGACTCTCGG GTGTTCGGGG TGCCAGCTAG ATTTGTATAA CTGTACATGT
181 CTACTGTTGT TACAGTTGCT CGGCTTAAAG CAGCTAGTAG ATTTGTATAA CTGTACAAAG
241 TGGGAGCCAT GTGAAGCTCC GGCGTCCAGC CTCCAGCGCA CCAGTAGCAG CATTAGCTGT
301 TTGCCACAAC GCCATTCAGA GAACTTAGTG GCATACCCTG GGCCCTCCAC TGTCGTGAAC
361 ATGCTAAACT CTGTCAATGT CTAATGTTTC GCTGACGATT TGCAGGATTG CATTGTGCAT
421 CAACAGCCTT TGCATTGCAG CGCTGCCTGC CAACAGTCGT ACCGTTAATA GCTCTTTTAA
481 GCTTTGTTTA GATCTAAAAA GTTTTTGGAT TTTAACATTG TAGCACTTTC ATTTTTATTT
541 GACAAACATT GTCCAATCAT GAAGTAACTA GGCTTAAAAG ATTCATCTCG CGATTTACAG
601 ACAAACTGTA CAATTACTTT TTATTTTTAT CTATATTTAA TGCTCTATGC ATATGCCGTA
661 A
Predicted gene structure (within gDNA segment 14024 to 17429):
Exon 1 14231 14254 ( 24 n); cDNA 373 395 ( 23 n); score: 0.625
Intron 1 14255 14744 ( 490 n); Pd: 0.000 (s: 0), Pa: 0.738 (s: 0)
Exon 2 14745 14779 ( 35 n); cDNA 396 426 ( 31 n); score: 0.629
Intron 2 14780 14854 ( 75 n); Pd: 0.995 (s: 0), Pa: 0.442 (s: 0)
Exon 3 14855 14879 ( 25 n); cDNA 427 452 ( 26 n); score: 0.480
Intron 3 14880 15233 ( 354 n); Pd: 0.978 (s: 0), Pa: 0.765 (s: 0)
Exon 4 15234 15252 ( 19 n); cDNA 453 470 ( 18 n); score: 0.684
Intron 4 15253 15846 ( 594 n); Pd: 0.000 (s: 0), Pa: 0.995 (s: 0)
Exon 5 15847 15856 ( 10 n); cDNA 471 480 ( 10 n); score: 0.700
Intron 5 15857 16875 (1019 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80)
Exon 6 16876 17056 ( 181 n); cDNA 481 661 ( 181 n); score: 0.845
MATCH 21326110+ 11996680+ 0.845 294 0.445 C
PGS_21326110+_11996680+ (14231 14254,14745 14779,14855 14879,15234 15252,15847 15856,16876 17056)
Alignment (genomic DNA sequence = upper lines):
GCTCATTTGT TAATGCTTGG CAGGATACTC ATAATGTTAG ATCTGTATGT TTTCATCCTT 14290
| ||| | ||||| || | | |
G-TCAATGTC TAATGTTTCG CTGA...... .......... .......... .......... 395
GTGGGGATTA CCTTTTAGCA GGTACTATGA TCTTTTCACT AAATTTAAAT TTGATTTCTA 14350
.......... .......... .......... .......... .......... .......... 395
GTTCTGCTGT GATTAACTGA TTCTTGATGT CTGATATCAG TTTGATATGC TCTGATTTTT 14410
.......... .......... .......... .......... .......... .......... 395
ATGCATTATA AGTTGTTAAC ATGTTTTCAG TTGTTATCTG TAAAGTAATT TAATCATTTC 14470
.......... .......... .......... .......... .......... .......... 395
ACCAAAACAA TTTGATATTT GGGCTTAAGA ATTTGGATTT CGTTCCTGGA TCAACAGTTT 14530
.......... .......... .......... .......... .......... .......... 395
CTGTCTCGTG GGCATTTGAA AAATACTGCA AGCATATCGT ATGGAATTTT CTTCTTACAT 14590
.......... .......... .......... .......... .......... .......... 395
ATAGTCAAAT ATTAACATTC AAATATGTAT TTTTTTTAAA AAAACTCATT TTCATATATT 14650
.......... .......... .......... .......... .......... .......... 395
TGGAAGCAAG TGACACTGAT AAAATTATTT GCAGGGACTG ATCACCCAGT TGCTCATTTA 14710
.......... .......... .......... .......... .......... .......... 395
TATGATATAA ATACTTTTAC ATGCTACTTA TCAGCAAATG CACAGGATTC TAGTTCTCCC 14770
| || ||||||| | || | |
.......... .......... .......... ....C-GATT TGCAGGATTG CA-TTGT-GC 418
ATTAACCAGG TAGCTTTTCT CTTTCCTTCT GATTCACAAG CATTAGATTG CATTGGTTAT 14830
|| ||| ||
ATCAAC-AG. .......... .......... .......... .......... .......... 426
ATTCTCATCA AAGTTCTCCG CCAGCCA-TG C-TTACTGAT GTTGCTGCCA GGTACGCTAC 14888
|| || | || | | | ||||||
.......... .......... ....CCTTTG CATTGCAGCG CTGCCTGCCA -......... 452
TCCTGTACTG GGAGCTTGTA TGTGACTGCT TCTAAAGATG GTTCTCTGCG CATTTGGGAT 14948
.......... .......... .......... .......... .......... .......... 452
GGAGTATCTG CTGAATGTGT TCGACCTATT ATTGGAGCAC ATGGATCTGC AGAAGCTACT 15008
.......... .......... .......... .......... .......... .......... 452
AGCGCAATTT TCACCAGAGA TGAGAGGTAA GCGAGCTACC AGCATGTCTA AGGTGCTCTT 15068
.......... .......... .......... .......... .......... .......... 452
CCCTCAAGAT AAAATCCAGT CATTGTTTGG TTTGAAGAAC AGAGAGAAAG GCATATGCTG 15128
.......... .......... .......... .......... .......... .......... 452
TATGATTCAA GACAGTAACT ACTTCAAACC CTGTTTGGAA TGTGGGAATC TTGTAGTGAT 15188
.......... .......... .......... .......... .......... .......... 452
TCTGAATGAT TTATAACATG TCCTGGATAA TTTCCTGTGT TTCAGACGTG TCGTAACTTT 15248
|| | ||||| | ||
.......... .......... .......... .......... .....AC-AG TCGTACCGTT 466
ATAACACGAA TAACTCTTTC TCCTTTACCC TACTATTTCA CCACTAAACA ACTAACTTGC 15308
| |
AATA...... .......... .......... .......... .......... .......... 470
CTATAAACAC TTTTTAGACT TCTTCTGAAA GGCCTAGTGT TTATGTGGTT ATATGCAGCG 15368
.......... .......... .......... .......... .......... .......... 470
TGAATGCACT TGCATATAAG ATTGATCTAA AAAATTGATG TAGTGAACTT TGACTACCCG 15428
.......... .......... .......... .......... .......... .......... 470
AAGTATATGC TTAGATAGTT CATGGATTTC TTTCATAAAA CTGCACACTG TATTCTGGTT 15488
.......... .......... .......... .......... .......... .......... 470
ATCTGTTATG AAGTTTACTA CGTTCTTTCA GGTATGTCCT ATCTTGTGGG AAAGATTCTT 15548
.......... .......... .......... .......... .......... .......... 470
GTGTCAAGTT ATGGGAAGTT GGCACTGGAC GACTTGTGAA GCAATATGCA GGAGCCATTC 15608
.......... .......... .......... .......... .......... .......... 470
GCAGACAATT TCGTTGTCAG GTTAGTTTCT CTGTGTTTCT ATAAGATTAT TATTTTTTCC 15668
.......... .......... .......... .......... .......... .......... 470
TGATTTAAAT TTACTCGTGT GCCATATATA TTATTTTTAC CCAAAATTTT AGGAAACAAA 15728
.......... .......... .......... .......... .......... .......... 470
ATATTGCAAT TCTTTAATTT GAAAATAGGC TGGTTTGAGC TTGCAGCTTA GGATAACAAC 15788
.......... .......... .......... .......... .......... .......... 470
ATACCTAACC TTGCTATGAT AGACAATAAA TATGATAATA ACTGTTCTTA CTATCCAGGC 15848
||
.......... .......... .......... .......... .......... ........GC 472
TGTCTTCAAT GAAACCGAAG AATTTGTTCT ATCAGTTGAT GAACAAAACA ATGAGGTAAA 15908
| | || |
TCTTTTAA.. .......... .......... .......... .......... .......... 480
TTCCAAATTG AGAACAGTAT ATATATTTGT ATTTCAGCAA GCTTAACTAT GATACGTCAC 15968
.......... .......... .......... .......... .......... .......... 480
TCTTCAGGTT GTCGTCTGGG ATGCACTTAC TGCAGAAAAG GTTGCAAGAT TGCCCTCTGG 16028
.......... .......... .......... .......... .......... .......... 480
CAGCACTGGT GCTCCCAGAT GGCTCGACCA CTCCCCAGTT GAACCAGTTT TTGTTATTTG 16088
.......... .......... .......... .......... .......... .......... 480
TGGAAATGAT AGATCGATCA GATTCTGGAA ACAAACCGTA TAGCTTGTAG ATTCAACCAT 16148
.......... .......... .......... .......... .......... .......... 480
TCAAATCAAA AGTATGCTTT CAGTATTACG TTTCAGGAGG AATGTGCTCA TGTAACTTTA 16208
.......... .......... .......... .......... .......... .......... 480
GTTGTATATG GGAGAAATTT GCATAAGCAT TTTTTTTATT GGAAACTGCA TAAGCAATTG 16268
.......... .......... .......... .......... .......... .......... 480
ATTGATCTAA TAGCAAACCC CAATGATATG TTTTTTTTTT GGCTCTGCAT AGCTGATGAC 16328
.......... .......... .......... .......... .......... .......... 480
AGTTGTATGA ACCCTTGACC TGATTCTTAT TGGTCAGGCC CTTTTCGATG ATTTGCTATT 16388
.......... .......... .......... .......... .......... .......... 480
TTATCCCAAT TGTGGATTGC GGAATATATT TCTTCTTCGA ATGTAATGAT GGTCTCGCCC 16448
.......... .......... .......... .......... .......... .......... 480
TACCACATGT GTGATAGCCT ATAAAAGTTC TACAACACAT TATTGCATTT CACTTAGGGC 16508
.......... .......... .......... .......... .......... .......... 480
ATGTTTAGAT TGAAGATGAA AATTTTTTAG GTCACATCGG ATATGTCGGA AGGATGTCGG 16568
.......... .......... .......... .......... .......... .......... 480
GAGGGGTTTT TAAAAACTAA TAAAAAAAAC AAATTACATA ACTCGTCAGG AAACTGCAAG 16628
.......... .......... .......... .......... .......... .......... 480
ACGAATCTAT TAAGTATAAT TAATCTATTA TTAGCACATG TGGGTTACTG TAGCACTTAA 16688
.......... .......... .......... .......... .......... .......... 480
GGCTAATCAT GGACTAACTA GGCTTAAAAA ATTCATCTCG CGATTTTCAA CCAAACTGTG 16748
.......... .......... .......... .......... .......... .......... 480
TAATTATTTT TTATCTACAT TTAATGTTTT ATGTATGTGT CTAAAGATTC AATGTGATGG 16808
.......... .......... .......... .......... .......... .......... 480
ATGAAAATTT TTTAGGTGGG AACTAAACAG GGCCTTATAT TTTTTAAAAA AGATGTGCAA 16868
.......... .......... .......... .......... .......... .......... 480
GTGTCAGGCC TTGTTTAGTT TCGAAAACTT TTTGGTTTTT GAGACTGTAG CACTTTCGTT 16928
|| |||||||| | |||| || ||||| |||| | | ||||| ||||||| ||
.......GCT TTGTTTAGAT CTAAAAAGTT TTTGGATTTT AACATTGTAG CACTTTCATT 533
TTTATTTGAC AAATATTGTC TAATCATAGA GTAACTAGGT TTAAAAGATT TATCTCGCGA 16988
|||||||||| ||| |||||| |||||| | ||||||||| |||||||||| |||||||||
TTTATTTGAC AAACATTGTC CAATCATGAA GTAACTAGGC TTAAAAGATT CATCTCGCGA 593
TTTATAGGTA AACTGTGCAA TTAGTTTTTA TTTTTGTATA TATTTAATGC TTCATGCATG 17048
|||| || | |||||| ||| ||| |||||| ||||| | || |||||||||| | ||||||
TTTACAGACA AACTGTACAA TTACTTTTTA TTTTTATCTA TATTTAATGC TCTATGCATA 653
TGTCGTAA 17056
|| |||||
TGCCGTAA 661
********************************************************************************
EST sequence 314 -strand (File: SPtuc02-10-22.2138-)
1 CCACACAACC GTAAACAGGC AAACGCTCAT TCTGAGCTAT CCTCTTGGGC ACACTGGTTT
61 CTGCGCACTA TACACTATTC CCCTCCTGCA GCTGATCGAA TTTTCACTCT ACATATCCTC
121 ATTTAGCTGA CCAATTTTCT TGTCAGCCTC TTTGCTGGAG GGATATCGTC AGACTTCCCA
181 AGAAAGTCCG ACTTACCATG TCCGGCCTTC AGCACCGGGG CAGCAGGCTT CACAGTGCTT
241 CGTGTTCTCG AGGTCACAGA CATCTGGGAT AGTTTCTCTG TAATTGATGA GACCTTTTGG
301 ATTGTTCCTC GACCAGTTTC AGGCAAGCTG CGTGAATGCC TAAGTACAGG ATTCCCTGCA
361 ATTTCAAGAA AAGTTTGTAA AAATCAGAAC CCAAATTTCA TGCAAGGAGT TGGGCAATGC
421 AACCCTATGG CCTTGTTTAG TTCCGAAAAC TTTTTGGTTT TTTGTACTAT AGCACTTTCG
481 TTTTTATTTA GCAATTATTG TCCAATCATA GATTAAATAG GCTTAAAAGA TTCATCTCAT
541 GATTATTGTC CAATCATAGC CTCGTGC
Predicted gene structure (within gDNA segment 13981 to 17625):
Exon 1 14110 14161 ( 52 n); cDNA 293 339 ( 47 n); score: 0.558
Intron 1 14162 14744 ( 583 n); Pd: 0.890 (s: 0.58), Pa: 0.738 (s: 0)
Exon 2 14745 14779 ( 35 n); cDNA 340 373 ( 34 n); score: 0.543
Intron 2 14780 15846 (1067 n); Pd: 0.995 (s: 0), Pa: 0.995 (s: 0.51)
Exon 3 15847 15903 ( 57 n); cDNA 374 429 ( 56 n); score: 0.509
Intron 3 15904 16875 ( 972 n); Pd: 0.991 (s: 0.53), Pa: 0.000 (s: 0.90)
Exon 4 16876 16995 ( 120 n); cDNA 430 548 ( 119 n); score: 0.858
MATCH 21326110+ SPtuc02-10-22.2138- 0.703 264 0.466 C
PGS_21326110+_SPtuc02-10-22.2138- (14110 14161,14745 14779,15847 15903,16876 16995)
Alignment (genomic DNA sequence = upper lines):
ATTTTTTGAC TTCTCAAAGA CCAATGCGAG GAAAGCGTTC AGAGTTATTC AGGTTGTAAA 14169
|||| || | || || ||| | || | |||| | | | | || |
CCTTTTGGAT TGTTCCTCGA CCAGTTTCAG GCAAGC-TGC -GTG-AATGC --........ 339
TTCTAGCAAT CCAATCTCTC TATATATCAT GTAAAATGGT GTGTTCATTG CATTTAACCA 14229
.......... .......... .......... .......... .......... .......... 339
GGCTCATTTG TTAATGCTTG GCAGGATACT CATAATGTTA GATCTGTATG TTTTCATCCT 14289
.......... .......... .......... .......... .......... .......... 339
TGTGGGGATT ACCTTTTAGC AGGTACTATG ATCTTTTCAC TAAATTTAAA TTTGATTTCT 14349
.......... .......... .......... .......... .......... .......... 339
AGTTCTGCTG TGATTAACTG ATTCTTGATG TCTGATATCA GTTTGATATG CTCTGATTTT 14409
.......... .......... .......... .......... .......... .......... 339
TATGCATTAT AAGTTGTTAA CATGTTTTCA GTTGTTATCT GTAAAGTAAT TTAATCATTT 14469
.......... .......... .......... .......... .......... .......... 339
CACCAAAACA ATTTGATATT TGGGCTTAAG AATTTGGATT TCGTTCCTGG ATCAACAGTT 14529
.......... .......... .......... .......... .......... .......... 339
TCTGTCTCGT GGGCATTTGA AAAATACTGC AAGCATATCG TATGGAATTT TCTTCTTACA 14589
.......... .......... .......... .......... .......... .......... 339
TATAGTCAAA TATTAACATT CAAATATGTA TTTTTTTTAA AAAAACTCAT TTTCATATAT 14649
.......... .......... .......... .......... .......... .......... 339
TTGGAAGCAA GTGACACTGA TAAAATTATT TGCAGGGACT GATCACCCAG TTGCTCATTT 14709
.......... .......... .......... .......... .......... .......... 339
ATATGATATA AATACTTTTA CATGCTACTT ATCAGCAAAT GCACAGGATT -CTAGTTCTC 14768
| || | |||||||| | | |
.......... .......... .......... .....CTAA- GTACAGGATT CCCTGCAATT 363
CCATTAACCA GGTAGCTTTT CTCTTTCCTT CTGATTCACA AGCATTAGAT TGCATTGGTT 14828
|| || | |
TCAAGAA-AA G......... .......... .......... .......... .......... 373
ATATTCTCAT CAAAGTTCTC CGCCAGCCAT GCTTACTGAT GTTGCTGCCA GGTACGCTAC 14888
.......... .......... .......... .......... .......... .......... 373
TCCTGTACTG GGAGCTTGTA TGTGACTGCT TCTAAAGATG GTTCTCTGCG CATTTGGGAT 14948
.......... .......... .......... .......... .......... .......... 373
GGAGTATCTG CTGAATGTGT TCGACCTATT ATTGGAGCAC ATGGATCTGC AGAAGCTACT 15008
.......... .......... .......... .......... .......... .......... 373
AGCGCAATTT TCACCAGAGA TGAGAGGTAA GCGAGCTACC AGCATGTCTA AGGTGCTCTT 15068
.......... .......... .......... .......... .......... .......... 373
CCCTCAAGAT AAAATCCAGT CATTGTTTGG TTTGAAGAAC AGAGAGAAAG GCATATGCTG 15128
.......... .......... .......... .......... .......... .......... 373
TATGATTCAA GACAGTAACT ACTTCAAACC CTGTTTGGAA TGTGGGAATC TTGTAGTGAT 15188
.......... .......... .......... .......... .......... .......... 373
TCTGAATGAT TTATAACATG TCCTGGATAA TTTCCTGTGT TTCAGACGTG TCGTAACTTT 15248
.......... .......... .......... .......... .......... .......... 373
ATAACACGAA TAACTCTTTC TCCTTTACCC TACTATTTCA CCACTAAACA ACTAACTTGC 15308
.......... .......... .......... .......... .......... .......... 373
CTATAAACAC TTTTTAGACT TCTTCTGAAA GGCCTAGTGT TTATGTGGTT ATATGCAGCG 15368
.......... .......... .......... .......... .......... .......... 373
TGAATGCACT TGCATATAAG ATTGATCTAA AAAATTGATG TAGTGAACTT TGACTACCCG 15428
.......... .......... .......... .......... .......... .......... 373
AAGTATATGC TTAGATAGTT CATGGATTTC TTTCATAAAA CTGCACACTG TATTCTGGTT 15488
.......... .......... .......... .......... .......... .......... 373
ATCTGTTATG AAGTTTACTA CGTTCTTTCA GGTATGTCCT ATCTTGTGGG AAAGATTCTT 15548
.......... .......... .......... .......... .......... .......... 373
GTGTCAAGTT ATGGGAAGTT GGCACTGGAC GACTTGTGAA GCAATATGCA GGAGCCATTC 15608
.......... .......... .......... .......... .......... .......... 373
GCAGACAATT TCGTTGTCAG GTTAGTTTCT CTGTGTTTCT ATAAGATTAT TATTTTTTCC 15668
.......... .......... .......... .......... .......... .......... 373
TGATTTAAAT TTACTCGTGT GCCATATATA TTATTTTTAC CCAAAATTTT AGGAAACAAA 15728
.......... .......... .......... .......... .......... .......... 373
ATATTGCAAT TCTTTAATTT GAAAATAGGC TGGTTTGAGC TTGCAGCTTA GGATAACAAC 15788
.......... .......... .......... .......... .......... .......... 373
ATACCTAACC TTGCTATGAT AGACAATAAA TATGATAATA ACTGTTCTTA CTATCCAGGC 15848
.......... .......... .......... .......... .......... ........TT 375
TGTCTTCAAT GA-AACCGAA GAATTTGTTC TATCAGTTGA TGAACAAAAC AATGAGGTAA 15907
||| ||| | |||| || | || | | | ||||| || ||| | |
TGT-AAAAAT CAGAACCCAA -ATTTCATGC AAGGAGTTGG GCAATGCAAC CCTATG.... 429
ATTCCAAATT GAGAACAGTA TATATATTTG TATTTCAGCA AGCTTAACTA TGATACGTCA 15967
.......... .......... .......... .......... .......... .......... 429
CTCTTCAGGT TGTCGTCTGG GATGCACTTA CTGCAGAAAA GGTTGCAAGA TTGCCCTCTG 16027
.......... .......... .......... .......... .......... .......... 429
GCAGCACTGG TGCTCCCAGA TGGCTCGACC ACTCCCCAGT TGAACCAGTT TTTGTTATTT 16087
.......... .......... .......... .......... .......... .......... 429
GTGGAAATGA TAGATCGATC AGATTCTGGA AACAAACCGT ATAGCTTGTA GATTCAACCA 16147
.......... .......... .......... .......... .......... .......... 429
TTCAAATCAA AAGTATGCTT TCAGTATTAC GTTTCAGGAG GAATGTGCTC ATGTAACTTT 16207
.......... .......... .......... .......... .......... .......... 429
AGTTGTATAT GGGAGAAATT TGCATAAGCA TTTTTTTTAT TGGAAACTGC ATAAGCAATT 16267
.......... .......... .......... .......... .......... .......... 429
GATTGATCTA ATAGCAAACC CCAATGATAT GTTTTTTTTT TGGCTCTGCA TAGCTGATGA 16327
.......... .......... .......... .......... .......... .......... 429
CAGTTGTATG AACCCTTGAC CTGATTCTTA TTGGTCAGGC CCTTTTCGAT GATTTGCTAT 16387
.......... .......... .......... .......... .......... .......... 429
TTTATCCCAA TTGTGGATTG CGGAATATAT TTCTTCTTCG AATGTAATGA TGGTCTCGCC 16447
.......... .......... .......... .......... .......... .......... 429
CTACCACATG TGTGATAGCC TATAAAAGTT CTACAACACA TTATTGCATT TCACTTAGGG 16507
.......... .......... .......... .......... .......... .......... 429
CATGTTTAGA TTGAAGATGA AAATTTTTTA GGTCACATCG GATATGTCGG AAGGATGTCG 16567
.......... .......... .......... .......... .......... .......... 429
GGAGGGGTTT TTAAAAACTA ATAAAAAAAA CAAATTACAT AACTCGTCAG GAAACTGCAA 16627
.......... .......... .......... .......... .......... .......... 429
GACGAATCTA TTAAGTATAA TTAATCTATT ATTAGCACAT GTGGGTTACT GTAGCACTTA 16687
.......... .......... .......... .......... .......... .......... 429
AGGCTAATCA TGGACTAACT AGGCTTAAAA AATTCATCTC GCGATTTTCA ACCAAACTGT 16747
.......... .......... .......... .......... .......... .......... 429
GTAATTATTT TTTATCTACA TTTAATGTTT TATGTATGTG TCTAAAGATT CAATGTGATG 16807
.......... .......... .......... .......... .......... .......... 429
GATGAAAATT TTTTAGGTGG GAACTAAACA GGGCCTTATA TTTTTTAAAA AAGATGTGCA 16867
.......... .......... .......... .......... .......... .......... 429
AGTGTCAGGC CTTGTTTAGT TTCGAAAACT TTTTGGTTTT TGAGACTGTA GCACTTTCGT 16927
|| |||||||||| | |||||||| |||||||||| | ||| || ||||||||||
........GC CTTGTTTAGT TCCGAAAACT TTTTGGTTTT TTGTACTATA GCACTTTCGT 481
TTTTATTTGA CAAATATTGT CTAATCATAG AGTAACTAGG TTTAAAAGAT TTATCTCGCG 16987
|||||||| ||| |||||| | |||||||| | ||| |||| ||||||||| | ||||| |
TTTTATTTAG CAATTATTGT CCAATCATAG ATTAAATAGG CTTAAAAGAT TCATCTCATG 541
ATTTATAG 16995
| |||| |
A-TTATTG 548
********************************************************************************
EST sequence 96 +strand (File: SBtuc02-10-21.8247+)
1 GCCCCCCTGC GCGGTGGCGA CTGGCGGCGC TTGCAAGGGT CATGGGGAGA CCGAGGACGC
61 GCGGTCGTGC TGCTTCGAGC CAGGCTGCTC CGGCGGCCGC GGACCACAGG GGCCGGTGGA
121 GGAGTGCAGG TCGTCCGCCG GCGGAGAGGC GTGCGTGCTG CTGCTCCCGT GCCGCCACCT
181 GTGCCTGTGC CGCGCGTGCG AGGCCCCCGT CGACGCCTGC CTCGTCTGCG CCGCAGCCAA
241 GAACGCATCG CTCCTTGTCC TGGTCTCTTG ATCCGAAAAA ATTTCGGATT TCGCTACTGT
301 AGCACTTTCG TTTGCTTGTG GTAAATATTG TCCAATCATA AACTAACTAA AGTCAAAAGA
361 TTCGTCTCAT GATTTATAGA CAAACTGTGT AATATATTTA GTGTTTCATG CATGTGCCAC
421 AAGATTCGAT GTTACGGGGA ATCTTGAAAA CTTTTTGGAT TTCGCTGGAA ACTAAGGTCT
481 TGTTTAGTTC CAAAATTTTT GCAAAACAGG TACTGTAGCA CTTTCGTTTG TATTTGACAA
541 ANTATTATCC AATCCATGTA CTAACTAGGC TCAAGAT
Predicted gene structure (within gDNA segment 14540 to 17474):
Exon 1 14844 14905 ( 62 n); cDNA 209 269 ( 61 n); score: 0.581
Intron 1 14906 16885 (1980 n); Pd: 0.708 (s: 0.55), Pa: 0.000 (s: 0.74)
Exon 2 16886 17101 ( 216 n); cDNA 270 467 ( 198 n); score: 0.704
MATCH 21326110+ SBtuc02-10-21.8247+ 0.676 278 0.482 C
PGS_21326110+_SBtuc02-10-21.8247+ (14844 14905,16886 17101)
Alignment (genomic DNA sequence = upper lines):
TTCTCCGCCA GCCATGCTTA CTGATGTTGC TGCCAGGTAC GC-T-ACTCC -TGTACTGGG 14900
|| |||| ||| | | | ||| | || |||| | || || | |||| ||| ||||
GTCGACGCCT GCC-T-CGT- CTG-CGCCGC AGCCAAGAAC GCATCGCTCC TTGTCCTGGT 264
AGCTTGTATG TGACTGCTTC TAAAGATGGT TCTCTGCGCA TTTGGGATGG AGTATCTGCT 14960
|||
CTCTT..... .......... .......... .......... .......... .......... 269
GAATGTGTTC GACCTATTAT TGGAGCACAT GGATCTGCAG AAGCTACTAG CGCAATTTTC 15020
.......... .......... .......... .......... .......... .......... 269
ACCAGAGATG AGAGGTAAGC GAGCTACCAG CATGTCTAAG GTGCTCTTCC CTCAAGATAA 15080
.......... .......... .......... .......... .......... .......... 269
AATCCAGTCA TTGTTTGGTT TGAAGAACAG AGAGAAAGGC ATATGCTGTA TGATTCAAGA 15140
.......... .......... .......... .......... .......... .......... 269
CAGTAACTAC TTCAAACCCT GTTTGGAATG TGGGAATCTT GTAGTGATTC TGAATGATTT 15200
.......... .......... .......... .......... .......... .......... 269
ATAACATGTC CTGGATAATT TCCTGTGTTT CAGACGTGTC GTAACTTTAT AACACGAATA 15260
.......... .......... .......... .......... .......... .......... 269
ACTCTTTCTC CTTTACCCTA CTATTTCACC ACTAAACAAC TAACTTGCCT ATAAACACTT 15320
.......... .......... .......... .......... .......... .......... 269
TTTAGACTTC TTCTGAAAGG CCTAGTGTTT ATGTGGTTAT ATGCAGCGTG AATGCACTTG 15380
.......... .......... .......... .......... .......... .......... 269
CATATAAGAT TGATCTAAAA AATTGATGTA GTGAACTTTG ACTACCCGAA GTATATGCTT 15440
.......... .......... .......... .......... .......... .......... 269
AGATAGTTCA TGGATTTCTT TCATAAAACT GCACACTGTA TTCTGGTTAT CTGTTATGAA 15500
.......... .......... .......... .......... .......... .......... 269
GTTTACTACG TTCTTTCAGG TATGTCCTAT CTTGTGGGAA AGATTCTTGT GTCAAGTTAT 15560
.......... .......... .......... .......... .......... .......... 269
GGGAAGTTGG CACTGGACGA CTTGTGAAGC AATATGCAGG AGCCATTCGC AGACAATTTC 15620
.......... .......... .......... .......... .......... .......... 269
GTTGTCAGGT TAGTTTCTCT GTGTTTCTAT AAGATTATTA TTTTTTCCTG ATTTAAATTT 15680
.......... .......... .......... .......... .......... .......... 269
ACTCGTGTGC CATATATATT ATTTTTACCC AAAATTTTAG GAAACAAAAT ATTGCAATTC 15740
.......... .......... .......... .......... .......... .......... 269
TTTAATTTGA AAATAGGCTG GTTTGAGCTT GCAGCTTAGG ATAACAACAT ACCTAACCTT 15800
.......... .......... .......... .......... .......... .......... 269
GCTATGATAG ACAATAAATA TGATAATAAC TGTTCTTACT ATCCAGGCTG TCTTCAATGA 15860
.......... .......... .......... .......... .......... .......... 269
AACCGAAGAA TTTGTTCTAT CAGTTGATGA ACAAAACAAT GAGGTAAATT CCAAATTGAG 15920
.......... .......... .......... .......... .......... .......... 269
AACAGTATAT ATATTTGTAT TTCAGCAAGC TTAACTATGA TACGTCACTC TTCAGGTTGT 15980
.......... .......... .......... .......... .......... .......... 269
CGTCTGGGAT GCACTTACTG CAGAAAAGGT TGCAAGATTG CCCTCTGGCA GCACTGGTGC 16040
.......... .......... .......... .......... .......... .......... 269
TCCCAGATGG CTCGACCACT CCCCAGTTGA ACCAGTTTTT GTTATTTGTG GAAATGATAG 16100
.......... .......... .......... .......... .......... .......... 269
ATCGATCAGA TTCTGGAAAC AAACCGTATA GCTTGTAGAT TCAACCATTC AAATCAAAAG 16160
.......... .......... .......... .......... .......... .......... 269
TATGCTTTCA GTATTACGTT TCAGGAGGAA TGTGCTCATG TAACTTTAGT TGTATATGGG 16220
.......... .......... .......... .......... .......... .......... 269
AGAAATTTGC ATAAGCATTT TTTTTATTGG AAACTGCATA AGCAATTGAT TGATCTAATA 16280
.......... .......... .......... .......... .......... .......... 269
GCAAACCCCA ATGATATGTT TTTTTTTTGG CTCTGCATAG CTGATGACAG TTGTATGAAC 16340
.......... .......... .......... .......... .......... .......... 269
CCTTGACCTG ATTCTTATTG GTCAGGCCCT TTTCGATGAT TTGCTATTTT ATCCCAATTG 16400
.......... .......... .......... .......... .......... .......... 269
TGGATTGCGG AATATATTTC TTCTTCGAAT GTAATGATGG TCTCGCCCTA CCACATGTGT 16460
.......... .......... .......... .......... .......... .......... 269
GATAGCCTAT AAAAGTTCTA CAACACATTA TTGCATTTCA CTTAGGGCAT GTTTAGATTG 16520
.......... .......... .......... .......... .......... .......... 269
AAGATGAAAA TTTTTTAGGT CACATCGGAT ATGTCGGAAG GATGTCGGGA GGGGTTTTTA 16580
.......... .......... .......... .......... .......... .......... 269
AAAACTAATA AAAAAAACAA ATTACATAAC TCGTCAGGAA ACTGCAAGAC GAATCTATTA 16640
.......... .......... .......... .......... .......... .......... 269
AGTATAATTA ATCTATTATT AGCACATGTG GGTTACTGTA GCACTTAAGG CTAATCATGG 16700
.......... .......... .......... .......... .......... .......... 269
ACTAACTAGG CTTAAAAAAT TCATCTCGCG ATTTTCAACC AAACTGTGTA ATTATTTTTT 16760
.......... .......... .......... .......... .......... .......... 269
ATCTACATTT AATGTTTTAT GTATGTGTCT AAAGATTCAA TGTGATGGAT GAAAATTTTT 16820
.......... .......... .......... .......... .......... .......... 269
TAGGTGGGAA CTAAACAGGG CCTTATATTT TTTAAAAAAG ATGTGCAAGT GTCAGGCCTT 16880
.......... .......... .......... .......... .......... .......... 269
GTTTAGTTTC GAAAACTTTT TGGTTTTTGA GACTGTAGCA CTTTCGTTTT TATTTGACAA 16940
| | | ||||| ||| || ||| | ||||||||| ||||||||| | || ||
.....GATCC GAAAAAATTT CGGATTTCGC TACTGTAGCA CTTTCGTTTG CTTGTGGTAA 324
ATATTGTCTA ATCATAGAGT AACTAGGTTT AAAAGATTTA TCTCGCGATT TATAGGTAAA 17000
|||||||| | |||||| | | ||||| | |||||||| |||| |||| ||||| |||
ATATTGTCCA ATCATAAACT AACTAAAGTC AAAAGATTCG TCTCATGATT TATAGACAAA 384
CTGTGCAATT AGTTTTTATT TTTGTATATA TTTAATGCTT CATGCATGTG TCGTAATATT 17060
||||| || ||||| |||| || || |||||||||| | || |||
CTGTG----- ------TA-- -----ATATA TTTAGTGTTT CATGCATGTG CCACAAGATT 426
TGATGTGTTG AGAAATTTTG AAAAGTTTTT GGTTTTTGGG G 17101
||||| | | ||| ||| |||| ||||| || ||| | |
CGATGTTACG GGGAATCTTG AAAACTTTTT GGATTTCGCT G 467
********************************************************************************
EST sequence 165 +strand (File: SPtuc02-10-22.2789+)
1 GCACGAGGAT TTTTCTTTTT TTGGTTACTG TAGCATTTCG TTTTTATTTG ACAAACATGT
61 GTCCAATCAC GGAGTAACTA CGCTCAAAAG ATTCATCTCA CAAATTACAG GTAAACTGTG
121 CAATTAGTTT TTATTTTCGT CTATATTTAA TGCTCCATGC ATGCGACCAA AGATTCGATG
181 TGACGAGGAA TCTTGAAAAT TTTTGCGAAC TAAACAAAGC CTCAGTCTGT TCTTGGTCAT
241 TCTTTTTTCA AAGCTGATGA GCTAAAGATT CACTAGTAAC TTCTAATATA TATACTACTA
301 TCCACGGTTA CGATTTGATG TTCCTGGTTT TCTTGCAATG AGCTAATCAA AGATTTGATC
361 TTTTTCTTGC AAATGCAACG GAAGCAGCGC GCATTATGAG GTGTGGTGGT GTGGGATGGG
421 CGATGGCCTG GGCCTGTGCA GATGAAGGAG CGACAGCGCT GGCGGCCTGA GGAAGACGCC
481 GTCCTGCGCG CGTACGTCCG GCAGTACGGC CCGCGCGAGT GGCACCTGGT GTCGCAGCGC
541 ATGA
Predicted gene structure (within gDNA segment 16261 to 19294):
Exon 1 16887 17091 ( 205 n); cDNA 1 205 ( 205 n); score: 0.795
MATCH 21326110+ SPtuc02-10-22.2789+ 0.795 205 0.377 C
PGS_21326110+_SPtuc02-10-22.2789+ (16887 17091)
Alignment (genomic DNA sequence = upper lines):
TTTCGAAAAC TTTTTGGTTT TT-GAGACTG TAGCACTTTC GTTTTTATTT GACAAATAT- 16944
||| | |||| ||| || | |||| ||||| |||| |||||||||| |||||| ||
GCACGAGGAT TTTTCTTTTT TTGGTTACTG TAGCA-TTTC GTTTTTATTT GACAAACATG 59
TGTCTAATCA TAGAGTAACT AGGTTTAAAA GATTTATCTC GCGATTTATA GGTAAACTGT 17004
|||| ||||| |||||||| | | | |||| |||| ||||| | | ||| | ||||||||||
TGTCCAATCA CGGAGTAACT ACGCTCAAAA GATTCATCTC ACAAATTACA GGTAAACTGT 119
GCAATTAGTT TTTATTTTTG TATATATTTA ATGCTTCATG CATGTGTCGT AATATTTGAT 17064
|||||||||| |||||||| | | |||||||| ||||| |||| |||| | | || ||| |||
GCAATTAGTT TTTATTTTCG TCTATATTTA ATGCTCCATG CATGCGACCA AAGATTCGAT 179
GTGTTGAGAA ATTTTGAAAA GTTTTTG 17091
||| ||| | || ||||||| ||||||
GTGACGAGGA ATCTTGAAAA -TTTTTG 205
********************************************************************************
EST sequence 169 +strand (File: 12617906+)
1 TAAGTCTGGT TAGTTCATAA TTAGATAATA ACTGTTAAAT ACAAATGAAA GTGTTACAGT
61 AGCTCGCGAA CTAAACAAGC CTATAAGTCA TTTTTTCCGA TTAGATCCAA ATTTTTTTTT
121 GGATTTTGAC ATTATAACAC TTTCGTTTGT ATTTAGTAAT TATTGTCCAA TCATAAACTA
181 ACTAGTCTTA AAAAGATTTA TCTCGTAAGT TACAGATATA CTGTGTAATT AATTATTTTT
241 TAATATATTT AATGTTCTAT GTTTTTGCCG CAAAATTCAA TTTGATTATA TATGGTCATG
301 CAGCCCGTGG CCCGACGATT TGGCTCGGCC CGGCCTGAGG GACCAGGCTG TGCCTAGGCC
361 ACCACCCAGG CACACGGCAC GGCGCGGGCA CAGCCCGTTC TAACAGTCGG TCTAGTAGCT
421 GCCTGGTGAA AATTAACTAT ATAGATGTGT GTGCGCCGCT AATTATTATA CTAATGAAAA
481 TAATGAATTG TTGACGAAAT GATGAAATGT TGCAGGATTT GGTAACAATA TTGATAAAAA
541 TGAGCTGCTG TCGAC
Predicted gene structure (within gDNA segment 15407 to 21074):
Exon 1 16506 16534 ( 29 n); cDNA 87 115 ( 29 n); score: 0.621
Intron 1 16535 16896 ( 362 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80)
Exon 2 16897 17066 ( 170 n); cDNA 116 283 ( 168 n); score: 0.753
Intron 2 17067 18722 (1656 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0)
Exon 3 18723 18734 ( 12 n); cDNA 284 295 ( 12 n); score: 0.750
Intron 3 18735 20533 (1799 n); Pd: 0.980 (s: 0), Pa: 0.965 (s: 0)
Exon 4 20534 20539 ( 6 n); cDNA 296 301 ( 6 n); score: 1.000
MATCH 21326110+ 12617906+ 0.753 217 0.391 C
PGS_21326110+_12617906+ (16506 16534,16897 17066,18723 18734,20534 20539)
Alignment (genomic DNA sequence = upper lines):
GGCATGTTTA GATTGAAGAT GAAAATTTTT TAGGTCACAT CGGATATGTC GGAAGGATGT 16565
| ||| ||| |||| |||||||
GTCATTTTTT CCGATTAGAT CCAAATTTT. .......... .......... .......... 115
CGGGAGGGGT TTTTAAAAAC TAATAAAAAA AACAAATTAC ATAACTCGTC AGGAAACTGC 16625
.......... .......... .......... .......... .......... .......... 115
AAGACGAATC TATTAAGTAT AATTAATCTA TTATTAGCAC ATGTGGGTTA CTGTAGCACT 16685
.......... .......... .......... .......... .......... .......... 115
TAAGGCTAAT CATGGACTAA CTAGGCTTAA AAAATTCATC TCGCGATTTT CAACCAAACT 16745
.......... .......... .......... .......... .......... .......... 115
GTGTAATTAT TTTTTATCTA CATTTAATGT TTTATGTATG TGTCTAAAGA TTCAATGTGA 16805
.......... .......... .......... .......... .......... .......... 115
TGGATGAAAA TTTTTTAGGT GGGAACTAAA CAGGGCCTTA TATTTTTTAA AAAAGATGTG 16865
.......... .......... .......... .......... .......... .......... 115
CAAGTGTCAG GCCTTGTTTA GTTTCGAAAA CTTTTTGGTT TTTGAGACTG TAGCACTTTC 16925
||||||| | ||||| | | || |||||||
.......... .......... .......... .TTTTTGGAT TTTGACATTA TAACACTTTC 144
GTTTTTATTT GACAAATATT GTCTAATCAT AGAGTAACTA G-GTTTAAAA GATTTATCTC 16984
|||| ||||| || |||| ||| |||||| | | |||||| | || |||| ||||||||||
GTTTGTATTT AGTAATTATT GTCCAATCAT AAACTAACTA GTCTTAAAAA GATTTATCTC 204
GCGATTTATA GGTAAACTGT GCAATTAGTT TTTATTTTTG TATATATTTA ATGCTTCATG 17044
| | ||| | | || ||||| | ||||| |||||||| ||||||||| ||| | |||
GTAAGTTACA GATATACTGT GTAATTA--- ATTATTTTTT AATATATTTA ATGTTCTATG 261
CATGTGTCGT AATATTTGAT GTGTTGAGAA ATTTTGAAAA GTTTTTGGTT TTTGGGGTGA 17104
| || || || ||| || |
TTTTTGCCGC AAAATTCAAT TT........ .......... .......... .......... 283
GTGGAGAAAA AAGAGAAGCT CCTTTCGAGG AAGCTCTCTG CGGCCTGTGG CTGCGGGTGA 17164
.......... .......... .......... .......... .......... .......... 283
CTGGGTGTGG TCGTGTGGGC CTAGCGGGAC TGCGGGAAGG AAGAATTTGA CCGGATTCTC 17224
.......... .......... .......... .......... .......... .......... 283
TATGTCACGT GGGCCTAGAA TGGGATGGCC CATCCGAGCC CGACCCATAT TTGCCAGATT 17284
.......... .......... .......... .......... .......... .......... 283
CGAGTGAACT GGCTCCAACT AAACAATTTT CCCCATTTGC CATTCCCGAC GAGCACCTTC 17344
.......... .......... .......... .......... .......... .......... 283
ACCGTCTCCT CCCACCTCGC GTGGCACGCC ATGGCTTTCT CCCCGCGCTC GCCGTGGTCG 17404
.......... .......... .......... .......... .......... .......... 283
CGTCCCAAGA GAAACGACGT CTACTCAACC TTCGTCGTCC ACGGCGATGA CGACGAGGAC 17464
.......... .......... .......... .......... .......... .......... 283
GACGCCCGCG GCAGCAGGCG CGGCAGGGGC CCGTCCACGC GGGCGGAGGA AGACGAGGAG 17524
.......... .......... .......... .......... .......... .......... 283
GAAGACCCCT CCTCGCTGCC TCCGCTTCTC CAGCGGCTCC CCAAGGACTT CGGCGGCCCC 17584
.......... .......... .......... .......... .......... .......... 283
TCCTTTGACG AAGACGAGGA CGCCTACTCC TCCGACCCCG ACGATGCTTC CCTCTCCGCT 17644
.......... .......... .......... .......... .......... .......... 283
ACGGTGGTCT TCAAGAGCGG CGCCCCGGCC TCCGCTCGAT CTCCGTTCCT GGATCTGCGG 17704
.......... .......... .......... .......... .......... .......... 283
CGCTCCAGCC CCCGCGCTAC CGATGACGAC CCATACTCTA CCTTCGTCGT CCACTCCACC 17764
.......... .......... .......... .......... .......... .......... 283
GCACGCTCGG GGGGGACCTC CTCCAGCCCT CGAGGGTCCG CCTCAGGCAC ATTCATCCGT 17824
.......... .......... .......... .......... .......... .......... 283
CGCTCCGGGG GCTCGTCCAG CCCTCACGAA TCCGTCTCTG GCACATTCAT CCGCCGGACT 17884
.......... .......... .......... .......... .......... .......... 283
AGCACCCCGT CGAGCCCCCG GGACTCGGTC TCCGGCACAT TCATCCGCCG ACCAGGGAGC 17944
.......... .......... .......... .......... .......... .......... 283
CCGTCGAGCC CCCGCGGGTC GTTCTCTGGC ACCTTCATTC GCCACACCAG CGGGGGTTCC 18004
.......... .......... .......... .......... .......... .......... 283
AGTTCCTATG AATCTGCTTC TGGCGGCGGC GGGGGTTTCG GGTCCTCTTT CTGGAGTCCA 18064
.......... .......... .......... .......... .......... .......... 283
GCGGTGGAGC AGACAGAGGA GCTCCGGCAA CCGTCGCCTC TGATGCAGCA ACAACAGCAG 18124
.......... .......... .......... .......... .......... .......... 283
CAGCATTCAA GGCGGAAGCC ATCAGTGAGC TCGGCGCCAG ACAGTGTTAC CAGAGAGGAT 18184
.......... .......... .......... .......... .......... .......... 283
CCTTCCACCA AGTACGAGCT GCTCCATGAG CTTGGTGCGC CTCTTGCTCT GGAATTATTG 18244
.......... .......... .......... .......... .......... .......... 283
TTTCATTAGT TCTGTATGTC TACTTGTAGA ATGGCTGAAG CTTTGAGCTG TTTTGCGAAA 18304
.......... .......... .......... .......... .......... .......... 283
TGCAAAATTC AATTGGGAAT GCAGGGAAAG GCTCATATGG TGCAGTGTAC AAAGCAAGGG 18364
.......... .......... .......... .......... .......... .......... 283
ATCTCAGAAC GCAGGAGCTT GTGGCTGTCA AGATTATCTC ACTAACAGAA GGGGTTAGTT 18424
.......... .......... .......... .......... .......... .......... 283
TCTAATTTTC TATTACAAAG TTCTGTGAAT ATTCTGAAAG GCCACCCGAG ACATATTTCA 18484
.......... .......... .......... .......... .......... .......... 283
TATTTGGCAA CCATATTGCT TTTGTTGTGA GCATTTTGTT TGCATGGGCT CAATTGTGAG 18544
.......... .......... .......... .......... .......... .......... 283
AGAATCTCAT AAATGTGGTT GCTGTCTGTT TTCCGAGTCG TTGCATTTTT CCAAAATATA 18604
.......... .......... .......... .......... .......... .......... 283
AGTATGTATC TTTGGTTTTC AGGAAGAAGG ATATGAAGAC ATACGGGGAG AAATTGAGAT 18664
.......... .......... .......... .......... .......... .......... 283
GCTGCAGCAG TGTAGCCATC CAAATGTTGT CCGCTACTTT GGAAGCTACC AAGGAGAGGA 18724
||
.......... .......... .......... .......... .......... ........GA 285
CTACCTATGG GTACAATCAA ATAGCCTGAT AGTATCCATT TTATTAACAT TAAGAAATAA 18784
|| |||||
TTATATATGG .......... .......... .......... .......... .......... 295
CTATCATTGG GAGATTTCTC TACTTCTTGA GTCATTTAAC ATGGGCTTGA TGCAAATGCG 18844
.......... .......... .......... .......... .......... .......... 295
ATTCTCAACT TACAGATAGT TATGGAGTAC TGTGGTGGTG GAAGTGTTGC TGATTTGATA 18904
.......... .......... .......... .......... .......... .......... 295
GGCATCACAG AGGAGCCTCT TGATGAATCC CAAATAGCTT ATATATGTAG AGAAGCACTA 18964
.......... .......... .......... .......... .......... .......... 295
AAGGTTCTAA CATAGTTGCA TCAGATTTGA AGTATTTGCT GCCTTGTTGG GCAACTAAAT 19024
.......... .......... .......... .......... .......... .......... 295
GTATTTGGAT ATTGAACTTT TGCGTGCTTA TTTTCTTCCA GGGCCTTGCT TACCTGCACT 19084
.......... .......... .......... .......... .......... .......... 295
CCATTTTTAA AGTTCATAGA GATATTAAGG GTGGCAACAT TCTTCTAACT GAGCAAGGCG 19144
.......... .......... .......... .......... .......... .......... 295
AGGTGAAGTT GGGTAAGCAC ATTTGTTTTC TTCAAAAGTT TTAGTTTGCA TTCTTAGCAC 19204
.......... .......... .......... .......... .......... .......... 295
CCATATTTCT GCATGTCCTG ACTCTGTGGT CGGCATGCTG TGGCGCCACA ACAATGTGCA 19264
.......... .......... .......... .......... .......... .......... 295
AAACAGGTGA TTTTGGTGTA GCTGCCCAGC TGACAAGAAC CATGTCAAAG CGCAACACGG 19324
.......... .......... .......... .......... .......... .......... 295
TATTCTAAAC AGTGTTTGTT TTGCCATTCA AATCCATAGT TCAAGAAACT TCACATCGAT 19384
.......... .......... .......... .......... .......... .......... 295
GTAACAAACA AAATGAAGTG GCAGATGAAA CTTGTCCATG CCAGTTTACC ATAAGCGGAC 19444
.......... .......... .......... .......... .......... .......... 295
CCATTTGTGC TTGTGCATAG TTCTTCAATG TGATGGTACT TTTATGGGAA CTTGAAGCAA 19504
.......... .......... .......... .......... .......... .......... 295
GTCTGTGTTG GAAAATGATT GCTGTGAAGT CCTAACTGTT TCTTTAAGTG TCATACTGCA 19564
.......... .......... .......... .......... .......... .......... 295
AGTGCATTAT GGTCTATTAG GTTTAAAATG AAAAATAAGA AAGTATATAT TTGTTATCTA 19624
.......... .......... .......... .......... .......... .......... 295
GTATGCCTCG CCTAATTCCT TGGCATTTCT TCCATTCTTT GAAACCCATA CTGGTGGAAC 19684
.......... .......... .......... .......... .......... .......... 295
CTAGTTGAAG TGGTTCCTGT ACAAATACTC TCTGCACTGC TTCTTCTCCC TTTCTTGTCG 19744
.......... .......... .......... .......... .......... .......... 295
TGACAGCCTC TAGTCCCCAT ATATCCCATT ATGAATCTGC TCACTCCCCC ATTTGGCTTC 19804
.......... .......... .......... .......... .......... .......... 295
TTCCTAGGCC ACCACTCAAC AATTCTTCTG TTCTTGATGA CTGCGATGCT CCATTCGATC 19864
.......... .......... .......... .......... .......... .......... 295
TGGCAAATTG CTGCCTTGCT GGAGCTATTC AAGAACGTAG AGGGTTACTG TGACATTAGC 19924
.......... .......... .......... .......... .......... .......... 295
ATATCAAACC AACAGGTCTG TTGGAAATCA TAATCACAAT GAACCTCCAA GTGGGAAATA 19984
.......... .......... .......... .......... .......... .......... 295
TTATCCAGGG CGTCATCTTA CCTCCAAGTT ATGGACTCTG CTTGACACTA GAGGAAGAGT 20044
.......... .......... .......... .......... .......... .......... 295
TAGTGCACAG GGAGTCCAAA TCAGGTAGGA TAGTTGATAG TTCATAATTG GCTAGATCTA 20104
.......... .......... .......... .......... .......... .......... 295
GGAGGAGGTA TGTGAGTGAG AGTTTGGAAA ATCAGGGTAG AATACAAGTT CAGGTTCCCT 20164
.......... .......... .......... .......... .......... .......... 295
AGGACGATGA TATAATGTAG TACCATACTA CAAGAATTGA CTATGGAATT TATTAATATC 20224
.......... .......... .......... .......... .......... .......... 295
TAGCTAGAAA CCAATATAAA AAAACAATCT ACTCCCCTTT CTACTGCTGC TGATACTTCT 20284
.......... .......... .......... .......... .......... .......... 295
ACTCTTTTTT TTTTCTCTCT TGTACACCTT CTTGGCTGCT ACACTTCTCT AGTTTCCAAT 20344
.......... .......... .......... .......... .......... .......... 295
CATGACAATA CATAAATGCT TGAGGAGCCC ATAACAAATA GTTCTACCCC ACCCACCCAC 20404
.......... .......... .......... .......... .......... .......... 295
ACCCTTTCGT AGTAAAGTGT GCCGACAACA GTTGGTGCCC TCTTCTCGAT GGTATCCATT 20464
.......... .......... .......... .......... .......... .......... 295
GCTTTTCTGC ATGCACACAC AAACAAACAC TTCTAAATAC ACATACTGAC TTGTCGTATT 20524
.......... .......... .......... .......... .......... .......... 295
GGCATGCAGT CATGC 20539
| |||||
.........T CATGC 301
********************************************************************************
EST sequence 31 +strand (File: SBtuc02-10-21.1543+)
1 CCGATTAGTG AGCTTGCCGG TTGAAAGCCC AAAACCTGTA AGTACTACTA ACAGAGGGTT
61 TGCCCGGCTG CTTATTTTAC AATTGTTATA GGTAGCGAAT TCTTTGTTGT ACCATGAAAA
121 ATAGTTACCA GTTGTCACAA TGAAATCCAA GAGCAGTTCA TCTCCCACTG GCTAAACATG
181 CTTTTCAAGA AGATCAACAA CTACAGTGAT TGATTCAAGG AACCAGAATT CAGAATGATG
241 AAAGAGACAA ATGGCATCAC ATCTAAGGTT CATAGGATTG TTCATTCAAA AAGTTCTCAC
301 TGCCAACTCC AGAATTTCCA ACCACCTGAC CCAATCAATA GGATATGGAG ATCAAAGCGC
361 AGCAACAAGC TCTAGGTTTT CTCACGGCTT CTTCTAGATG CCTGAACACC AGAGATATAC
421 TCAGAATCAG AACTGCTGTG TCAATGCACA CTGTAGCACT TTCGTTCGTA TTTGACAAAT
481 GTTGTCCAAT CATGGACTAA CTAGGCTCAA AAGATTTGTC TCGTAAATTA CAGACAAATT
541 GTGCAATTAG TTATTATTTT TATATATATT TAATGCTCT
Predicted gene structure (within gDNA segment 14367 to 17354):
Exon 1 14367 14385 ( 19 n); cDNA 388 406 ( 19 n); score: 0.737
Intron 1 14386 15019 ( 634 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0)
Exon 2 15020 15034 ( 15 n); cDNA 407 419 ( 13 n); score: 0.800
Intron 2 15035 15774 ( 740 n); Pd: 0.794 (s: 0), Pa: 0.921 (s: 0)
Exon 3 15775 15789 ( 15 n); cDNA 420 434 ( 15 n); score: 0.667
Intron 3 15790 15846 ( 57 n); Pd: 0.000 (s: 0), Pa: 0.995 (s: 0)
Exon 4 15847 15862 ( 16 n); cDNA 435 449 ( 15 n); score: 0.750
Intron 4 15863 16911 (1049 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88)
Exon 5 16912 17041 ( 130 n); cDNA 450 579 ( 130 n); score: 0.846
MATCH 21326110+ SBtuc02-10-21.1543+ 0.846 195 0.337 C
PGS_21326110+_SBtuc02-10-21.1543+ (14367 14385,15020 15034,15775 15789,15847 15862,16912 17041)
Alignment (genomic DNA sequence = upper lines):
CTGATTCTTG ATGTCTGATA TCAGTTTGAT ATGCTCTGAT TTTTATGCAT TATAAGTTGT 14426
|| |||| | ||| ||||
CTTCTTCTAG ATGCCTGAA. .......... .......... .......... .......... 406
TAACATGTTT TCAGTTGTTA TCTGTAAAGT AATTTAATCA TTTCACCAAA ACAATTTGAT 14486
.......... .......... .......... .......... .......... .......... 406
ATTTGGGCTT AAGAATTTGG ATTTCGTTCC TGGATCAACA GTTTCTGTCT CGTGGGCATT 14546
.......... .......... .......... .......... .......... .......... 406
TGAAAAATAC TGCAAGCATA TCGTATGGAA TTTTCTTCTT ACATATAGTC AAATATTAAC 14606
.......... .......... .......... .......... .......... .......... 406
ATTCAAATAT GTATTTTTTT TAAAAAAACT CATTTTCATA TATTTGGAAG CAAGTGACAC 14666
.......... .......... .......... .......... .......... .......... 406
TGATAAAATT ATTTGCAGGG ACTGATCACC CAGTTGCTCA TTTATATGAT ATAAATACTT 14726
.......... .......... .......... .......... .......... .......... 406
TTACATGCTA CTTATCAGCA AATGCACAGG ATTCTAGTTC TCCCATTAAC CAGGTAGCTT 14786
.......... .......... .......... .......... .......... .......... 406
TTCTCTTTCC TTCTGATTCA CAAGCATTAG ATTGCATTGG TTATATTCTC ATCAAAGTTC 14846
.......... .......... .......... .......... .......... .......... 406
TCCGCCAGCC ATGCTTACTG ATGTTGCTGC CAGGTACGCT ACTCCTGTAC TGGGAGCTTG 14906
.......... .......... .......... .......... .......... .......... 406
TATGTGACTG CTTCTAAAGA TGGTTCTCTG CGCATTTGGG ATGGAGTATC TGCTGAATGT 14966
.......... .......... .......... .......... .......... .......... 406
GTTCGACCTA TTATTGGAGC ACATGGATCT GCAGAAGCTA CTAGCGCAAT TTTCACCAGA 15026
|||||||
.......... .......... .......... .......... .......... ...CACCAGA 413
GATGAGAGGT AAGCGAGCTA CCAGCATGTC TAAGGTGCTC TTCCCTCAAG ATAAAATCCA 15086
||| | |
GAT-ATA-.. .......... .......... .......... .......... .......... 419
GTCATTGTTT GGTTTGAAGA ACAGAGAGAA AGGCATATGC TGTATGATTC AAGACAGTAA 15146
.......... .......... .......... .......... .......... .......... 419
CTACTTCAAA CCCTGTTTGG AATGTGGGAA TCTTGTAGTG ATTCTGAATG ATTTATAACA 15206
.......... .......... .......... .......... .......... .......... 419
TGTCCTGGAT AATTTCCTGT GTTTCAGACG TGTCGTAACT TTATAACACG AATAACTCTT 15266
.......... .......... .......... .......... .......... .......... 419
TCTCCTTTAC CCTACTATTT CACCACTAAA CAACTAACTT GCCTATAAAC ACTTTTTAGA 15326
.......... .......... .......... .......... .......... .......... 419
CTTCTTCTGA AAGGCCTAGT GTTTATGTGG TTATATGCAG CGTGAATGCA CTTGCATATA 15386
.......... .......... .......... .......... .......... .......... 419
AGATTGATCT AAAAAATTGA TGTAGTGAAC TTTGACTACC CGAAGTATAT GCTTAGATAG 15446
.......... .......... .......... .......... .......... .......... 419
TTCATGGATT TCTTTCATAA AACTGCACAC TGTATTCTGG TTATCTGTTA TGAAGTTTAC 15506
.......... .......... .......... .......... .......... .......... 419
TACGTTCTTT CAGGTATGTC CTATCTTGTG GGAAAGATTC TTGTGTCAAG TTATGGGAAG 15566
.......... .......... .......... .......... .......... .......... 419
TTGGCACTGG ACGACTTGTG AAGCAATATG CAGGAGCCAT TCGCAGACAA TTTCGTTGTC 15626
.......... .......... .......... .......... .......... .......... 419
AGGTTAGTTT CTCTGTGTTT CTATAAGATT ATTATTTTTT CCTGATTTAA ATTTACTCGT 15686
.......... .......... .......... .......... .......... .......... 419
GTGCCATATA TATTATTTTT ACCCAAAATT TTAGGAAACA AAATATTGCA ATTCTTTAAT 15746
.......... .......... .......... .......... .......... .......... 419
TTGAAAATAG GCTGGTTTGA GCTTGCAGCT TAGGATAACA ACATACCTAA CCTTGCTATG 15806
|| || || | | ||
.......... .......... ........CT CAGAATCAGA ACT....... .......... 434
ATAGACAATA AATATGATAA TAACTGTTCT TACTATCCAG GCTGTCTTCA ATGAAACCGA 15866
||||| ||| ||| |
.......... .......... .......... .......... GCTGT-GTCA ATGCAC.... 449
AGAATTTGTT CTATCAGTTG ATGAACAAAA CAATGAGGTA AATTCCAAAT TGAGAACAGT 15926
.......... .......... .......... .......... .......... .......... 449
ATATATATTT GTATTTCAGC AAGCTTAACT ATGATACGTC ACTCTTCAGG TTGTCGTCTG 15986
.......... .......... .......... .......... .......... .......... 449
GGATGCACTT ACTGCAGAAA AGGTTGCAAG ATTGCCCTCT GGCAGCACTG GTGCTCCCAG 16046
.......... .......... .......... .......... .......... .......... 449
ATGGCTCGAC CACTCCCCAG TTGAACCAGT TTTTGTTATT TGTGGAAATG ATAGATCGAT 16106
.......... .......... .......... .......... .......... .......... 449
CAGATTCTGG AAACAAACCG TATAGCTTGT AGATTCAACC ATTCAAATCA AAAGTATGCT 16166
.......... .......... .......... .......... .......... .......... 449
TTCAGTATTA CGTTTCAGGA GGAATGTGCT CATGTAACTT TAGTTGTATA TGGGAGAAAT 16226
.......... .......... .......... .......... .......... .......... 449
TTGCATAAGC ATTTTTTTTA TTGGAAACTG CATAAGCAAT TGATTGATCT AATAGCAAAC 16286
.......... .......... .......... .......... .......... .......... 449
CCCAATGATA TGTTTTTTTT TTGGCTCTGC ATAGCTGATG ACAGTTGTAT GAACCCTTGA 16346
.......... .......... .......... .......... .......... .......... 449
CCTGATTCTT ATTGGTCAGG CCCTTTTCGA TGATTTGCTA TTTTATCCCA ATTGTGGATT 16406
.......... .......... .......... .......... .......... .......... 449
GCGGAATATA TTTCTTCTTC GAATGTAATG ATGGTCTCGC CCTACCACAT GTGTGATAGC 16466
.......... .......... .......... .......... .......... .......... 449
CTATAAAAGT TCTACAACAC ATTATTGCAT TTCACTTAGG GCATGTTTAG ATTGAAGATG 16526
.......... .......... .......... .......... .......... .......... 449
AAAATTTTTT AGGTCACATC GGATATGTCG GAAGGATGTC GGGAGGGGTT TTTAAAAACT 16586
.......... .......... .......... .......... .......... .......... 449
AATAAAAAAA ACAAATTACA TAACTCGTCA GGAAACTGCA AGACGAATCT ATTAAGTATA 16646
.......... .......... .......... .......... .......... .......... 449
ATTAATCTAT TATTAGCACA TGTGGGTTAC TGTAGCACTT AAGGCTAATC ATGGACTAAC 16706
.......... .......... .......... .......... .......... .......... 449
TAGGCTTAAA AAATTCATCT CGCGATTTTC AACCAAACTG TGTAATTATT TTTTATCTAC 16766
.......... .......... .......... .......... .......... .......... 449
ATTTAATGTT TTATGTATGT GTCTAAAGAT TCAATGTGAT GGATGAAAAT TTTTTAGGTG 16826
.......... .......... .......... .......... .......... .......... 449
GGAACTAAAC AGGGCCTTAT ATTTTTTAAA AAAGATGTGC AAGTGTCAGG CCTTGTTTAG 16886
.......... .......... .......... .......... .......... .......... 449
TTTCGAAAAC TTTTTGGTTT TTGAGACTGT AGCACTTTCG TTTTTATTTG ACAAATATTG 16946
||||| |||||||||| || |||||| |||||| |||
.......... .......... .....ACTGT AGCACTTTCG TTCGTATTTG ACAAATGTTG 484
TCTAATCATA GAGTAACTAG GTTTAAAAGA TTTATCTCGC GATTTATAGG TAAACTGTGC 17006
|| |||||| || ||||||| | | |||||| ||| ||||| | ||| || ||| |||||
TCCAATCATG GACTAACTAG GCTCAAAAGA TTTGTCTCGT AAATTACAGA CAAATTGTGC 544
AATTAGTTTT TATTTTTGTA TATATTTAAT GCTTC 17041
|||||||| | ||||||| || |||||||||| |||
AATTAGTTAT TATTTTTATA TATATTTAAT GCTCT 579
********************************************************************************
EST sequence 20 +strand (File: SBtuc02-10-21.1021+)
1 GTTTGGAAGG TAGGCTTATT GTAGTACTTT TGGTTTTATT TGACAATTAT TATTTAATTA
61 TAGACTAACT AGGTTTAAAA AATTCATCTC GCAAATTACA GGTAAATTGT GCAATTAGTT
121 ATCTTTTTTA TCTATATTCA GTGTTTCATG CATGTGCCGC AAGATTCGAT GTGACGAAAA
181 ATCTTGAAAA GATTTGGAAA CTAAACAACG CCGTAGTTTT CCGCTGCCTC CGGTTTTCCC
241 TGAAAGCCAC TTTTCCGCTG CCTCCAGTTT GCGGGAAATA TAATCAGGAA CAACTGAACA
301 TAAATCATAC ATACAACAAT GCTCGAAACA CCATATCAAT CACTACTCAC CGTAATTTGG
361 TCAAGCCTAT TTATTTGAGC TTATCAGCCA AATCTATCGT CATTCAATAA TGTTTTTCTC
421 TCACAACAAT CATTGATTTT TGTCATGACT TATCAGTCAA AAAAACTGTG GAGA
Predicted gene structure (within gDNA segment 16463 to 18945):
Exon 1 16914 17091 ( 178 n); cDNA 20 197 ( 178 n); score: 0.820
MATCH 21326110+ SBtuc02-10-21.1021+ 0.820 178 0.376 C
PGS_21326110+_SBtuc02-10-21.1021+ (16914 17091)
Alignment (genomic DNA sequence = upper lines):
TGTAGCACTT TCGTTTTTAT TTGACAAATA TTGTCTAATC ATAGAGTAAC TAGGTTTAAA 16973
||||| |||| | | |||||| ||||||| || || | |||| ||||| |||| ||||||||||
TGTAGTACTT TTGGTTTTAT TTGACAATTA TTATTTAATT ATAGACTAAC TAGGTTTAAA 79
AGATTTATCT CGCGATTTAT AGGTAAACTG TGCAATTAGT TTTTATTTTT GTATATATTT 17033
| ||| |||| ||| | ||| ||||||| || |||||||||| | | ||||| | ||||||
AAATTCATCT CGCAAATTAC AGGTAAATTG TGCAATTAGT TATCTTTTTT ATCTATATTC 139
AATGCTTCAT GCATGTGTCG TAATATTTGA TGTGTTGAGA AATTTTGAAA AGTTTTTG 17091
| || ||||| ||||||| || || ||| || |||| || | ||| |||||| || ||| |
AGTGTTTCAT GCATGTGCCG CAAGATTCGA TGTGACGAAA AATCTTGAAA AGATTTGG 197
********************************************************************************
EST sequence 329 -strand (File: 11679374-)
1 AAATTCATCT CGTGATTTAC AGACAAACTG TTCAATTAGT TTTTATTTAT ATTTATATTT
61 AATGCTTCAT GTGCCGTAAG ATTTGATACG ACGGAAAATC TTGTAAAATT TTTGGTTTTT
121 AGGCTGAACT AAACAAGGCC TTTGTAATTT GTATGGATGG GAGCGAATGA TTTTGGAGGT
181 GGATGGGACG GGATGCCATG CGTTTGGTGT GCATGCATGC ATGGAATATG ATATTGGCNN
241 NNNNTNGTTC ACAATTGGCA GTTGTTCACT GAAAATGGAA TCAAGTACTA CTAGTAATTG
301 TTAAAGATTG CCAGATGTGA ATTAAAACGA AGAGATTTGG TGGAAAGAGT TTCCAAGTCG
361 ATATCCAGAT TATTTCGATG GAAGATGAAT AAACTCTAAG GAATGTTTTG GCTCCTCTAT
421 AGCACGAAAA TGGCGATCGA GAAGCTTTTG GGCAACCCAG CTGACATGTG GGAAATCTTT
481 TGTTTTTGAG AAGAT
Predicted gene structure (within gDNA segment 16412 to 19464):
Exon 1 16974 17104 ( 131 n); cDNA 1 127 ( 127 n); score: 0.794
MATCH 21326110+ 11679374- 0.794 131 0.265 C
PGS_21326110+_11679374- (16974 17104)
Alignment (genomic DNA sequence = upper lines):
AGATTTATCT CGCGATTTAT AGGTAAACTG TGCAATTAGT TTTTATTTTT GTATATATTT 17033
| ||| |||| || |||||| || |||||| | |||||||| |||||||| | | |||||||
AAATTCATCT CGTGATTTAC AGACAAACTG TTCAATTAGT TTTTATTTAT ATTTATATTT 60
AATGCTTCAT GCATGTGTCG TAATATTTGA TGTGTTGAGA AATTTTGAAA AGTTTTTGGT 17093
||||| | | |||||| || ||| |||||| | | | | ||| ||| || | ||||||||
AATGC-T--T -CATGTGCCG TAAGATTTGA TACGACGGAA AATCTTGTAA AATTTTTGGT 116
TTTTGGGGTG A 17104
|||| || || |
TTTTAGGCTG A 127
********************************************************************************
EST sequence 251 -strand (File: 14514413-)
1 AGGTAAACTG TGCAATTAGT TTTTATTTTC GTCTATATTT AGTGTTTCAT GTATGTGCTA
61 CAAGATTTGA TGTGATGGAG AATCTTGAAA AGTTTTTGGT TTCTGGGGTG AACTAAACAA
121 GGCCATGTAT GACAAGCATA ACGACACATT CAACTGGACG GTTGAAGGTC GTCCAAATGG
181 TGGGCTATAT ACATTTGAGA ATAATCACAA TCTAATCCAA AGGTACGCAA AGCATGTAGA
241 GATGGTAGCT GTAGATATTA TATACACTTA ACTACTGGCT ATTGTCGAAC CACTGTACTC
301 CAAATTAGCC GTCTTTTGGG CTAAGACCTG CTTGAACCAT TCCACTGACG CCTTGGGAAT
361 CCTTGTCAGG TTGTTGTTGT AGTCAATGTA GTAGAGTCCA AACCGCACCG TGTACCCAGA
421 GTTCCACTCC CAGTTATCTA GCAGTGACCA TACAAAGTAG CCGTGGACGT TGCAGCCTTC
481 CTTCCTTATT GCATC
Predicted gene structure (within gDNA segment 16689 to 19360):
Exon 1 16994 17104 ( 111 n); cDNA 1 111 ( 111 n); score: 0.856
MATCH 21326110+ 14514413- 0.856 111 0.224 C
PGS_21326110+_14514413- (16994 17104)
Alignment (genomic DNA sequence = upper lines):
AGGTAAACTG TGCAATTAGT TTTTATTTTT GTATATATTT AATGCTTCAT GCATGTGTCG 17053
|||||||||| |||||||||| ||||||||| || ||||||| | || ||||| | |||||
AGGTAAACTG TGCAATTAGT TTTTATTTTC GTCTATATTT AGTGTTTCAT GTATGTGCTA 60
TAATATTTGA TGTGTTGAGA AATTTTGAAA AGTTTTTGGT TTTTGGGGTG A 17104
|| |||||| |||| || ||| |||||| |||||||||| || ||||||| |
CAAGATTTGA TGTGATGGAG AATCTTGAAA AGTTTTTGGT TTCTGGGGTG A 111
********************************************************************************
EST sequence 121 +strand (File: 25451626+)
1 GCCGTCCTCC GCCCCACCTC CCTCCCATGG CCTTCTCCCC GCGCTCGCCG TGGTCGCGCT
61 CCAAAAAGCC CGACATCTAC TCCACCGTTG TGGTCCACGA CGACGAGGAC GACGCCCGCG
121 GCGGCGGCGC CGCCCGCGCG GAGGATGACG ACGACGACGA CCCCTCCGCG CTGCCCCCGC
181 TCCTCCAAGC GCCTCCCCAA GGACTTCGGN GGNGCGTCCT TCGAACGACG AANAACAACC
241 TTACTCCTCG GACCTCGAAG AAGCCTCGCT CTCCGGCAAC GTNGTCAANA AAGCGGCGGG
301 GGCCCCGCCT NCAAATTGTN CTCCTCCCGA TTCCCGTTTC TGGATTTGNN GCGNTTCAAG
361 CCCCGNGGCG GCCAAAGGCG AACCGTTNTN CAACTTNCTC GTCCAAGGGA ACGNGCGCTN
421 CGGGGGGGGG CCTNCAAACC CCGNGAATTC GTNTCCCGGA AGNTTANAAC CCANTNCGGG
481 NGGGCCCCCA AACCCCGNGA GTCCTTTTTC GGGAAAAATT ANTCGGCAAA AANCGTGGGT
541 TCTCCAAACC CCAAAAANNT NTTTCCGGGA AGNTTAATTA A
Predicted gene structure (within gDNA segment 16921 to 19742):
Exon 1 17372 17665 ( 294 n); cDNA 24 297 ( 274 n); score: 0.745
MATCH 21326110+ 25451626+ 0.745 294 0.506 C
PGS_21326110+_25451626+ (17372 17665)
Alignment (genomic DNA sequence = upper lines):
GCCATGGCTT TCTCCCCGCG CTCGCCGTGG TCGCGTCCCA AGAGAAACGA CGTCTACTCA 17431
||||||| | |||||||||| |||||||||| ||||| ||| | | ||| | |||||||
CCCATGGCCT TCTCCCCGCG CTCGCCGTGG TCGCGCTCCA AAAAGCCCGA CATCTACTCC 83
ACCTTCGTCG TCCACGGCGA TGACGACGAG GACGACGCCC GCGGCAGCAG GCGCGGCAGG 17491
||| | || | |||| | ||||||||| |||||||||| || | || | |||||
ACCGTTGTGG TCCA---C-- -GACGACGAG GACGACGCCC GC-G--GC-- G-GCGGC--- 128
GGCCCGTCCA CGCGGGCGGA GGAAGACGAG GAGGAAGACC CCTCCTCGCT GCCTCCGCTT 17551
| ||| || ||| ||||| ||| ||||| || || |||| ||||| |||| ||| |||||
-G-CCG-CC- CGC--GCGGA GGATGACGAC GACGACGACC CCTCCGCGCT GCCCCCGCTC 182
CTCC-AGCGG CTCCCCAAGG ACTTCGGCGG CCCCTCCTTT G-ACGAAGAC GAGGACGCCT 17609
|||| |||| |||||||||| ||||||| || | ||||| | |||| || | | | |
CTCCAAGCGC CTCCCCAAGG ACTTCGGNGG NGCGTCCTTC GAACGACGAA NAACAACCTT 242
ACTCCTCCGA CCCCGACGAT GCTTCCCTCT CCGCTACGGT GGTCTTCAAG AGCGGC 17665
||||||| || || ||| || || || |||| ||| | || ||| || ||||||
ACTCCTCGGA CCTCGAAGAA GCCTCGCTCT CCGGCAACGT NGTCAANAA- AGCGGC 297
********************************************************************************
EST sequence 3 +strand (File: STtuc02-10-23.14238+)
1 GGGTACATTT GAGGCCACAG GGCAGTAAGG TGTCGTCGAG TTCAATACCG GACAGTGTGA
61 CTAGGGAAGA TCCTTGTACT AAGTATGAAT TGCTCCACGA GCTAGGGAAG GGTTCATATG
121 GGGCTGTTTA TAAAGCTCGA GACTTGAGGA CTTCAGAAAT GGTTGCCATC AAAGTCATAT
181 CATTATCTGA AGGGGAGGAA GGCTATGAAG AAATTCGAGG TGAAATTGAG ATGTTGCAGC
241 AGTGCAGTCA TCCAAATGTT GTTCGCTATC TTGGGAGCTA CCAAGGCGAA GAGTACCTTT
301 GGATAGTAAT GGAGTATTGT GGGGGTGGAA GTGTTGCTGA CTTAATGAAT GTCACAGATG
361 AGGCTTTAGA GGAGTATCAA ATAGCATTTA TTTGTCGAGA GGCATTGAAG GGCCTCTCCT
421 ATCTGCACTC TATTTTTAAA GTACACAGAG ATATTAAAGG TGGCAATATC TTACTGACTG
481 ATCAAGGAGA GGTTAAGTTA GGTGATTTTG GTGTTGCTGC GCAGCTGACT AGAACCATGT
541 CCAAACGTAA CACGTTTATC GGCACTCCCC ATTGGATGGC ACCAGAAGTT ATTCAAGAAA
601 GTCGTTATGA TGGGAAGGTA GATGTATGGG CTCTCGGAGT GTCTGCTATT GAAATGGCGG
661 AGGGTCTTCC TCCTAGGGCA ACAGTGCATC CAATGAGGGT GCTATTTATG ATATCCATTG
721 AACCAGCTCC AATGCTTGAG GATAAAGAGA AATGGTCTCT TGTATTCCAT GATTTTGTTG
781 CCAAGTGCCT TACAAAAGAC ACCCGACTTC GTCCAACTGC CTCCGAGATG CTAAAGCACA
841 AATTCATCGA AAAATTCAAA GCAGGAGCTT TCTGTAATGA TGCCGAAGAT TGAGAAGGCC
901 AAACAAATTA GGGCATCAAT GGCCTTGGAA GCGCCAAATA TTGTTTCCGA GACTCCCCGA
961 GTATTTGGAG TCC
Predicted gene structure (within gDNA segment 17249 to 23007):
Exon 1 18165 18218 ( 54 n); cDNA 52 105 ( 54 n); score: 0.778
Intron 1 18219 18328 ( 110 n); Pd: 0.941 (s: 0.76), Pa: 0.878 (s: 0.66)
Exon 2 18329 18417 ( 89 n); cDNA 106 194 ( 89 n); score: 0.663
Intron 2 18418 18626 ( 209 n); Pd: 0.993 (s: 0.62), Pa: 0.998 (s: 0.86)
Exon 3 18627 18734 ( 108 n); cDNA 195 302 ( 108 n); score: 0.843
Intron 3 18735 18859 ( 125 n); Pd: 0.980 (s: 0.84), Pa: 0.787 (s: 0.80)
Exon 4 18860 18967 ( 108 n); cDNA 303 410 ( 108 n); score: 0.769
Intron 4 18968 19065 ( 98 n); Pd: 0.000 (s: 0.72), Pa: 0.953 (s: 0.84)
Exon 5 19066 19156 ( 91 n); cDNA 411 501 ( 91 n); score: 0.813
Intron 5 19157 19270 ( 114 n); Pd: 0.984 (s: 0.80), Pa: 0.000 (s: 0.88)
Exon 6 19271 19323 ( 53 n); cDNA 502 554 ( 53 n); score: 0.887
Intron 6 19324 20843 (1520 n); Pd: 0.770 (s: 0.88), Pa: 0.962 (s: 0.88)
Exon 7 20844 20906 ( 63 n); cDNA 555 617 ( 63 n); score: 0.889
Intron 7 20907 21626 ( 720 n); Pd: 0.929 (s: 0.92), Pa: 0.999 (s: 0.80)
Exon 8 21627 21671 ( 45 n); cDNA 618 662 ( 45 n); score: 0.800
Intron 8 21672 21777 ( 106 n); Pd: 0.992 (s: 0.80), Pa: 0.998 (s: 0)
Exon 9 21778 21813 ( 36 n); cDNA 663 698 ( 36 n); score: 0.694
Intron 9 21814 22451 ( 638 n); Pd: 0.596 (s: 0), Pa: 0.894 (s: 0.84)
Exon 10 22452 22507 ( 56 n); cDNA 699 754 ( 56 n); score: 0.857
MATCH 21326110+ STtuc02-10-23.14238+ 0.804 703 0.723 C
PGS_21326110+_STtuc02-10-23.14238+ (18165 18218,18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22507)
Alignment (genomic DNA sequence = upper lines):
ACAGTGTTAC CAGAGAGGAT CCTTCCACCA AGTACGAGCT GCTCCATGAG CTTGGTGCGC 18224
||||||| || || || ||| |||| || | |||| || | |||||| ||| || |
ACAGTGTGAC TAGGGAAGAT CCTTGTACTA AGTATGAATT GCTCCACGAG CTAG...... 105
CTCTTGCTCT GGAATTATTG TTTCATTAGT TCTGTATGTC TACTTGTAGA ATGGCTGAAG 18284
.......... .......... .......... .......... .......... .......... 105
CTTTGAGCTG TTTTGCGAAA TGCAAAATTC AATTGGGAAT GCAGGGAAAG GCTCATATGG 18344
|||| | | ||||||||
.......... .......... .......... .......... ....GGAAGG GTTCATATGG 121
TGCAGTGTAC AAAGCAAGGG ATCTCAGAAC GCAGGAGCTT GTGGCTGTCA AGATTATCTC 18404
|| || || ||||| | | | | || || || | || || ||| | | || ||
GGCTGTTTAT AAAGCTCGAG ACTTGAGGAC TTCAGAAATG GTTGCCATCA AAGTCATATC 181
ACTAACAGAA GGGGTTAGTT TCTAATTTTC TATTACAAAG TTCTGTGAAT ATTCTGAAAG 18464
| || | ||| |||
ATTATCTGAA GGG....... .......... .......... .......... .......... 194
GCCACCCGAG ACATATTTCA TATTTGGCAA CCATATTGCT TTTGTTGTGA GCATTTTGTT 18524
.......... .......... .......... .......... .......... .......... 194
TGCATGGGCT CAATTGTGAG AGAATCTCAT AAATGTGGTT GCTGTCTGTT TTCCGAGTCG 18584
.......... .......... .......... .......... .......... .......... 194
TTGCATTTTT CCAAAATATA AGTATGTATC TTTGGTTTTC AGGAAGAAGG ATATGAAGAC 18644
|| ||||| ||||||||
.......... .......... .......... .......... ..GAGGAAGG CTATGAAGAA 212
ATACGGGGAG AAATTGAGAT GCTGCAGCAG TGTAGCCATC CAAATGTTGT CCGCTACTTT 18704
|| || || | |||||||||| | |||||||| || || |||| |||||||||| ||||| ||
ATTCGAGGTG AAATTGAGAT GTTGCAGCAG TGCAGTCATC CAAATGTTGT TCGCTATCTT 272
GGAAGCTACC AAGGAGAGGA CTACCTATGG GTACAATCAA ATAGCCTGAT AGTATCCATT 18764
|| ||||||| |||| || || ||||| |||
GGGAGCTACC AAGGCGAAGA GTACCTTTGG .......... .......... .......... 302
TTATTAACAT TAAGAAATAA CTATCATTGG GAGATTTCTC TACTTCTTGA GTCATTTAAC 18824
.......... .......... .......... .......... .......... .......... 302
ATGGGCTTGA TGCAAATGCG ATTCTCAACT TACAGATAGT TATGGAGTAC TGTGGTGGTG 18884
||||| |||||||| ||||| ||||
.......... .......... .......... .....ATAGT AATGGAGTAT TGTGGGGGTG 327
GAAGTGTTGC TGATTTGATA GGCATCACAG AGGAGCCTCT TGATGAATCC CAAATAGCTT 18944
|||||||||| ||| || || |||||| | ||| || | || || | |||||||| |
GAAGTGTTGC TGACTTAATG AATGTCACAG ATGAGGCTTT AGAGGAGTAT CAAATAGCAT 387
ATATATGTAG AGAAGCACTA AAGGTTCTAA CATAGTTGCA TCAGATTTGA AGTATTTGCT 19004
||| ||| | ||| ||| | |||
TTATTTGTCG AGAGGCATTG AAG....... .......... .......... .......... 410
GCCTTGTTGG GCAACTAAAT GTATTTGGAT ATTGAACTTT TGCGTGCTTA TTTTCTTCCA 19064
.......... .......... .......... .......... .......... .......... 410
GGGCCTTGCT TACCTGCACT CCATTTTTAA AGTTCATAGA GATATTAAGG GTGGCAACAT 19124
||||| | || ||||||| | |||||||| ||| || ||| |||||||| | ||||||| ||
.GGCCTCTCC TATCTGCACT CTATTTTTAA AGTACACAGA GATATTAAAG GTGGCAATAT 469
TCTTCTAACT GAGCAAGGCG AGGTGAAGTT GGGTAAGCAC ATTTGTTTTC TTCAAAAGTT 19184
| || ||| || ||||| | |||| ||||| |
CTTACTGACT GATCAAGGAG AGGTTAAGTT AG........ .......... .......... 501
TTAGTTTGCA TTCTTAGCAC CCATATTTCT GCATGTCCTG ACTCTGTGGT CGGCATGCTG 19244
.......... .......... .......... .......... .......... .......... 501
TGGCGCCACA ACAATGTGCA AAACAGGTGA TTTTGGTGTA GCTGCCCAGC TGACAAGAAC 19304
|||| ||||||||| ||||| |||| |||| |||||
.......... .......... ......GTGA TTTTGGTGTT GCTGCGCAGC TGACTAGAAC 535
CATGTCAAAG CGCAACACGG TATTCTAAAC AGTGTTTGTT TTGCCATTCA AATCCATAGT 19364
|||||| || || ||||||
CATGTCCAAA CGTAACACG. .......... .......... .......... .......... 554
TCAAGAAACT TCACATCGAT GTAACAAACA AAATGAAGTG GCAGATGAAA CTTGTCCATG 19424
.......... .......... .......... .......... .......... .......... 554
CCAGTTTACC ATAAGCGGAC CCATTTGTGC TTGTGCATAG TTCTTCAATG TGATGGTACT 19484
.......... .......... .......... .......... .......... .......... 554
TTTATGGGAA CTTGAAGCAA GTCTGTGTTG GAAAATGATT GCTGTGAAGT CCTAACTGTT 19544
.......... .......... .......... .......... .......... .......... 554
TCTTTAAGTG TCATACTGCA AGTGCATTAT GGTCTATTAG GTTTAAAATG AAAAATAAGA 19604
.......... .......... .......... .......... .......... .......... 554
AAGTATATAT TTGTTATCTA GTATGCCTCG CCTAATTCCT TGGCATTTCT TCCATTCTTT 19664
.......... .......... .......... .......... .......... .......... 554
GAAACCCATA CTGGTGGAAC CTAGTTGAAG TGGTTCCTGT ACAAATACTC TCTGCACTGC 19724
.......... .......... .......... .......... .......... .......... 554
TTCTTCTCCC TTTCTTGTCG TGACAGCCTC TAGTCCCCAT ATATCCCATT ATGAATCTGC 19784
.......... .......... .......... .......... .......... .......... 554
TCACTCCCCC ATTTGGCTTC TTCCTAGGCC ACCACTCAAC AATTCTTCTG TTCTTGATGA 19844
.......... .......... .......... .......... .......... .......... 554
CTGCGATGCT CCATTCGATC TGGCAAATTG CTGCCTTGCT GGAGCTATTC AAGAACGTAG 19904
.......... .......... .......... .......... .......... .......... 554
AGGGTTACTG TGACATTAGC ATATCAAACC AACAGGTCTG TTGGAAATCA TAATCACAAT 19964
.......... .......... .......... .......... .......... .......... 554
GAACCTCCAA GTGGGAAATA TTATCCAGGG CGTCATCTTA CCTCCAAGTT ATGGACTCTG 20024
.......... .......... .......... .......... .......... .......... 554
CTTGACACTA GAGGAAGAGT TAGTGCACAG GGAGTCCAAA TCAGGTAGGA TAGTTGATAG 20084
.......... .......... .......... .......... .......... .......... 554
TTCATAATTG GCTAGATCTA GGAGGAGGTA TGTGAGTGAG AGTTTGGAAA ATCAGGGTAG 20144
.......... .......... .......... .......... .......... .......... 554
AATACAAGTT CAGGTTCCCT AGGACGATGA TATAATGTAG TACCATACTA CAAGAATTGA 20204
.......... .......... .......... .......... .......... .......... 554
CTATGGAATT TATTAATATC TAGCTAGAAA CCAATATAAA AAAACAATCT ACTCCCCTTT 20264
.......... .......... .......... .......... .......... .......... 554
CTACTGCTGC TGATACTTCT ACTCTTTTTT TTTTCTCTCT TGTACACCTT CTTGGCTGCT 20324
.......... .......... .......... .......... .......... .......... 554
ACACTTCTCT AGTTTCCAAT CATGACAATA CATAAATGCT TGAGGAGCCC ATAACAAATA 20384
.......... .......... .......... .......... .......... .......... 554
GTTCTACCCC ACCCACCCAC ACCCTTTCGT AGTAAAGTGT GCCGACAACA GTTGGTGCCC 20444
.......... .......... .......... .......... .......... .......... 554
TCTTCTCGAT GGTATCCATT GCTTTTCTGC ATGCACACAC AAACAAACAC TTCTAAATAC 20504
.......... .......... .......... .......... .......... .......... 554
ACATACTGAC TTGTCGTATT GGCATGCAGT CATGCATTGA GACCAAATCC ATCAGGACTG 20564
.......... .......... .......... .......... .......... .......... 554
CATCCGCACA ACACAAAATC TCACCATACA TGCATACGGT GTCTTGGATG TTTCTGTTGT 20624
.......... .......... .......... .......... .......... .......... 554
TGGGGCGCTA ATATGTACTT CTACCAAAAT GCAAGGACAA ACTGTCCCAA TTTTACAGTA 20684
.......... .......... .......... .......... .......... .......... 554
AAATAACTAT CATTGTGAAA CAGACTGTCA GCATCGCTCT CTAAGCTCAG TCTGTACAGC 20744
.......... .......... .......... .......... .......... .......... 554
TTTTACCAAA TAAAAATAAT GCAATGGTTT TTGGAAAGAA TAAAGGTTTT AGTGGCACAC 20804
.......... .......... .......... .......... .......... .......... 554
TAATTTCCAT AATTTGACCC TTCATGTTTA TGCTTTCAGT TCATTGGTAC TCCACATTGG 20864
| | || || || ||| ||||||
.......... .......... .......... .........T TTATCGGCAC TCCCCATTGG 575
ATGGCACCAG AGGTCATTCA AGAAAGTCGT TATGATGGAA AGGTATCATG CTATCATCTC 20924
|||||||||| | || ||||| |||||||||| |||||||| | ||
ATGGCACCAG AAGTTATTCA AGAAAGTCGT TATGATGGGA AG........ .......... 617
TACGGTGTTC AGCTATGGAA TTGTTCATTT TAGCAGCTTT TGTGGATGTT GCCATTTTAC 20984
.......... .......... .......... .......... .......... .......... 617
TCTAAAGACT TGGTGGCCGT AAATTTATGA TTGGGTTTTC AGTGAACAGG ATTTCTTTAA 21044
.......... .......... .......... .......... .......... .......... 617
TATTTTGTTT CTTTGGGTGT GGAATGTCCT TGCATATGGC AGAACAAGGT TACACGTAAA 21104
.......... .......... .......... .......... .......... .......... 617
TTCATAAAAG CCATTAAATA ATTGTTATGG AACCCCTGCC AGTGCCAAAA CATGTTTATT 21164
.......... .......... .......... .......... .......... .......... 617
TCTTTTCCTT GTCTCTTGAT GGTTCCTCAA GCAAAAAAAA AATAAAATAA AATCATTACC 21224
.......... .......... .......... .......... .......... .......... 617
TACTACTAAG CCTCCAAAAC AAGTCTACTG GTTGCAATTA GGGATGAAAA CGGATCGGAT 21284
.......... .......... .......... .......... .......... .......... 617
ACGGACGGAT ATCATCGATA TCATATTTGT TTTCGTATTT CTGGTCGAAT TCGGATTCGA 21344
.......... .......... .......... .......... .......... .......... 617
ATACGGATAA TGTCAACTAT ATCGGATAAG ATACGATTGG ATGTCGACAT CATAAATATA 21404
.......... .......... .......... .......... .......... .......... 617
TGATTTAAGT ACTCGGATAC GGATACGGTA TCGGATGTAG AACATTCGAA CTCGGATACG 21464
.......... .......... .......... .......... .......... .......... 617
AACTGGTCTG AATCCCTCTA AACGAATTCG GTCTCAAATA CGGTCGGAAA ATATCCGTAC 21524
.......... .......... .......... .......... .......... .......... 617
CGTTTTCATC CCTAGTTGCA ATGTTGAGAA AATTATTTTG GCAGCTGGAA TTCTTCCTTT 21584
.......... .......... .......... .......... .......... .......... 617
AGTTTGTCTT ACCAAAACAT TTGTTCTTGT TTCCTGCACC AGGTAGATGT TTGGGCATTA 21644
|||||||| ||||| |
.......... .......... .......... .......... ..GTAGATGT ATGGGCTCTC 635
GGTGTATCTG CAATTGAGAT GGCAGAGGTA GACATTGTTC CTTGCTTCTT TCTTTTTTTG 21704
|| || |||| | ||||| || ||| |||
GGAGTGTCTG CTATTGAAAT GGCGGAG... .......... .......... .......... 662
ACTGTACACT TTTGTTTTTA ATTTTGTGTC GTGACAATGC TTTTTAATAT TTATTTTGTA 21764
.......... .......... .......... .......... .......... .......... 662
TCTCTGACTG TAGGGCATGC CACCAAGATC CACTGTACAT CCAATGAGAG TAAGAGATGC 21824
|| | | | || || | || || ||| ||||||||
.......... ...GGTCTTC CTCCTAGGGC AACAGTGCAT CCAATGAGG. .......... 698
TTCTCAATGC CTGTTAGTAT CTGCAGTTAA TGAGGCTAAT AGGTTATAAC AGAATTAAAA 21884
.......... .......... .......... .......... .......... .......... 698
AAATCTGCTC TATCTTTGGT GCACTGTACT TTTTATCTCT TTACTGTCAA GGGCGTCGAG 21944
.......... .......... .......... .......... .......... .......... 698
GGACAGGGTA GGAGGATCCC GGCTACGTAG TTCATAGACC AATCTGTGGT GTGGGGCGGA 22004
.......... .......... .......... .......... .......... .......... 698
GGTTTTACCC CTCAGTGCCC GATTGTTTCA GCAAAGGTAG ATTAGGGAAT TGGGATAATT 22064
.......... .......... .......... .......... .......... .......... 698
GTTCTTTCTT GATTATCATC ATACGAGTAC AAGAATATAT AGGCCATTCG GCCATAACAG 22124
.......... .......... .......... .......... .......... .......... 698
CTTGGAGCCA ATTGCTCCTA AATCTAAGGC CATTATCGGC TCTCCTGCCT TCTAGGCTCT 22184
.......... .......... .......... .......... .......... .......... 698
CGCCTGTTCA GTGTGCTCTG CATGCGTGGT GACCGCGCCT ACGGTTCTGC TGGTGCGCCA 22244
.......... .......... .......... .......... .......... .......... 698
TCTGCGGCTC TGCGAGCATC CTGGGCGTGC CGTTTCCTTG TGTAGGCGCG GTCCCACATG 22304
.......... .......... .......... .......... .......... .......... 698
ACATTTACTT TCTTTCTGAT GCATTTGCTT CTTTACTTTG CCTTGGTAAA TATTTGGTAT 22364
.......... .......... .......... .......... .......... .......... 698
ACATATCAAT ATATTGTTTC ATCTTCGTTT AGCATGAATG CTTGATAGAC CGACTAACGA 22424
.......... .......... .......... .......... .......... .......... 698
TCTCTCTTCC CCCTTCCCTT ATCTCAGGTT ATCTTCATGA TATCCAGTGA ACCAGCACCA 22484
|| | || |||| |||||| ||| |||||| |||
.......... .......... .......GTG CTATTTATGA TATCCATTGA ACCAGCTCCA 731
ATGCTGGAGG ATAAGGAGAA ATG 22507
||||| |||| |||| ||||| |||
ATGCTTGAGG ATAAAGAGAA ATG 754
********************************************************************************
EST sequence 4 +strand (File: STtuc02-10-23.14239+)
1 GGTCGATTTC AATACCAGAC AGTGTGACTA GGGAAGATCC TTGTACTAAG TATGAATTGC
61 TCCACGAGCT AGGGAAAGGT TCATATGGGG CTGTTTATAA AGCTTGAGAC TTGAGGACTT
121 CAGAAATGGT TGCCATCAAA GTCATATCGT TATCTGAAGG GGAGGAAGGC TATGAAGAAA
181 TTCGAGGTGA AATTGAGATG TTACAGCAGT GCAGTCATCC AAATGTTGTT CGCTATCTTG
241 GGAGCTACCA AGGAGAAGAG TACCTTTGGA TAGTAATGGA GTATTGTGGG GGTGGAAGTG
301 TTGCTGACTT AATGAATGTC ACAGATGAGG CTTTAGAGGA GTATCAAATA GCATTTATTT
361 GTCGAGAGGC ATTGAAGGTG ATTTTGGTGT TGCTGCGCAG CTGACTAGAA CCATGTCCAA
421 ACGTAACACG TTTATCGGCA CTCCCCATTG GATGGCACCA GAAGTTATTC AAGAAAGTCG
481 TTATGATGGG AAGGTAGATG TATGGGCTCT TGGAGTGTCT GCTATTGAAA TGGCGGAGGG
541 TCTTCCTCCT AGGGCAACAG TGCATCCAAT GAGGGTGCTA TTTATGATAT CCATTGAACC
601 AGCTCCAATG CTCGAGGATA AAGAGAAATG GTCTCTTGTA TTCCATGATT TTGTTGCCAA
661 GTGCCTTACA AAAGACACCC GACTTCGTCC AATTGCCTCC GAGATGCTAA AGCACAAATT
721 CATCG
Predicted gene structure (within gDNA segment 17414 to 22387):
Exon 1 18165 18218 ( 54 n); cDNA 19 72 ( 54 n); score: 0.778
Intron 1 18219 18328 ( 110 n); Pd: 0.941 (s: 0.76), Pa: 0.878 (s: 0.68)
Exon 2 18329 18417 ( 89 n); cDNA 73 161 ( 89 n); score: 0.663
Intron 2 18418 18626 ( 209 n); Pd: 0.993 (s: 0.60), Pa: 0.998 (s: 0.84)
Exon 3 18627 18734 ( 108 n); cDNA 162 269 ( 108 n); score: 0.843
Intron 3 18735 18859 ( 125 n); Pd: 0.980 (s: 0.86), Pa: 0.787 (s: 0.80)
Exon 4 18860 18967 ( 108 n); cDNA 270 377 ( 108 n); score: 0.769
Intron 4 18968 19270 ( 303 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.88)
Exon 5 19271 19323 ( 53 n); cDNA 378 430 ( 53 n); score: 0.887
Intron 5 19324 20843 (1520 n); Pd: 0.770 (s: 0.88), Pa: 0.962 (s: 0.88)
Exon 6 20844 20906 ( 63 n); cDNA 431 493 ( 63 n); score: 0.889
Intron 6 20907 21626 ( 720 n); Pd: 0.929 (s: 0.92), Pa: 0.999 (s: 0.80)
Exon 7 21627 21671 ( 45 n); cDNA 494 538 ( 45 n); score: 0.800
Intron 7 21672 21777 ( 106 n); Pd: 0.992 (s: 0.80), Pa: 0.998 (s: 0)
Exon 8 21778 21813 ( 36 n); cDNA 539 574 ( 36 n); score: 0.694
MATCH 21326110+ STtuc02-10-23.14239+ 0.796 556 0.767 C
PGS_21326110+_STtuc02-10-23.14239+ (18165 18218,18329 18417,18627 18734,18860 18967,19271 19323,20844 20906,21627 21671,21778 21813)
Alignment (genomic DNA sequence = upper lines):
ACAGTGTTAC CAGAGAGGAT CCTTCCACCA AGTACGAGCT GCTCCATGAG CTTGGTGCGC 18224
||||||| || || || ||| |||| || | |||| || | |||||| ||| || |
ACAGTGTGAC TAGGGAAGAT CCTTGTACTA AGTATGAATT GCTCCACGAG CTAG...... 72
CTCTTGCTCT GGAATTATTG TTTCATTAGT TCTGTATGTC TACTTGTAGA ATGGCTGAAG 18284
.......... .......... .......... .......... .......... .......... 72
CTTTGAGCTG TTTTGCGAAA TGCAAAATTC AATTGGGAAT GCAGGGAAAG GCTCATATGG 18344
|||||| | ||||||||
.......... .......... .......... .......... ....GGAAAG GTTCATATGG 88
TGCAGTGTAC AAAGCAAGGG ATCTCAGAAC GCAGGAGCTT GTGGCTGTCA AGATTATCTC 18404
|| || || ||||| | | | | || || || | || || ||| | | || ||
GGCTGTTTAT AAAGCTTGAG ACTTGAGGAC TTCAGAAATG GTTGCCATCA AAGTCATATC 148
ACTAACAGAA GGGGTTAGTT TCTAATTTTC TATTACAAAG TTCTGTGAAT ATTCTGAAAG 18464
|| | ||| |||
GTTATCTGAA GGG....... .......... .......... .......... .......... 161
GCCACCCGAG ACATATTTCA TATTTGGCAA CCATATTGCT TTTGTTGTGA GCATTTTGTT 18524
.......... .......... .......... .......... .......... .......... 161
TGCATGGGCT CAATTGTGAG AGAATCTCAT AAATGTGGTT GCTGTCTGTT TTCCGAGTCG 18584
.......... .......... .......... .......... .......... .......... 161
TTGCATTTTT CCAAAATATA AGTATGTATC TTTGGTTTTC AGGAAGAAGG ATATGAAGAC 18644
|| ||||| ||||||||
.......... .......... .......... .......... ..GAGGAAGG CTATGAAGAA 179
ATACGGGGAG AAATTGAGAT GCTGCAGCAG TGTAGCCATC CAAATGTTGT CCGCTACTTT 18704
|| || || | |||||||||| | | |||||| || || |||| |||||||||| ||||| ||
ATTCGAGGTG AAATTGAGAT GTTACAGCAG TGCAGTCATC CAAATGTTGT TCGCTATCTT 239
GGAAGCTACC AAGGAGAGGA CTACCTATGG GTACAATCAA ATAGCCTGAT AGTATCCATT 18764
|| ||||||| ||||||| || ||||| |||
GGGAGCTACC AAGGAGAAGA GTACCTTTGG .......... .......... .......... 269
TTATTAACAT TAAGAAATAA CTATCATTGG GAGATTTCTC TACTTCTTGA GTCATTTAAC 18824
.......... .......... .......... .......... .......... .......... 269
ATGGGCTTGA TGCAAATGCG ATTCTCAACT TACAGATAGT TATGGAGTAC TGTGGTGGTG 18884
||||| |||||||| ||||| ||||
.......... .......... .......... .....ATAGT AATGGAGTAT TGTGGGGGTG 294
GAAGTGTTGC TGATTTGATA GGCATCACAG AGGAGCCTCT TGATGAATCC CAAATAGCTT 18944
|||||||||| ||| || || |||||| | ||| || | || || | |||||||| |
GAAGTGTTGC TGACTTAATG AATGTCACAG ATGAGGCTTT AGAGGAGTAT CAAATAGCAT 354
ATATATGTAG AGAAGCACTA AAGGTTCTAA CATAGTTGCA TCAGATTTGA AGTATTTGCT 19004
||| ||| | ||| ||| | |||
TTATTTGTCG AGAGGCATTG AAG....... .......... .......... .......... 377
GCCTTGTTGG GCAACTAAAT GTATTTGGAT ATTGAACTTT TGCGTGCTTA TTTTCTTCCA 19064
.......... .......... .......... .......... .......... .......... 377
GGGCCTTGCT TACCTGCACT CCATTTTTAA AGTTCATAGA GATATTAAGG GTGGCAACAT 19124
.......... .......... .......... .......... .......... .......... 377
TCTTCTAACT GAGCAAGGCG AGGTGAAGTT GGGTAAGCAC ATTTGTTTTC TTCAAAAGTT 19184
.......... .......... .......... .......... .......... .......... 377
TTAGTTTGCA TTCTTAGCAC CCATATTTCT GCATGTCCTG ACTCTGTGGT CGGCATGCTG 19244
.......... .......... .......... .......... .......... .......... 377
TGGCGCCACA ACAATGTGCA AAACAGGTGA TTTTGGTGTA GCTGCCCAGC TGACAAGAAC 19304
|||| ||||||||| ||||| |||| |||| |||||
.......... .......... ......GTGA TTTTGGTGTT GCTGCGCAGC TGACTAGAAC 411
CATGTCAAAG CGCAACACGG TATTCTAAAC AGTGTTTGTT TTGCCATTCA AATCCATAGT 19364
|||||| || || ||||||
CATGTCCAAA CGTAACACG. .......... .......... .......... .......... 430
TCAAGAAACT TCACATCGAT GTAACAAACA AAATGAAGTG GCAGATGAAA CTTGTCCATG 19424
.......... .......... .......... .......... .......... .......... 430
CCAGTTTACC ATAAGCGGAC CCATTTGTGC TTGTGCATAG TTCTTCAATG TGATGGTACT 19484
.......... .......... .......... .......... .......... .......... 430
TTTATGGGAA CTTGAAGCAA GTCTGTGTTG GAAAATGATT GCTGTGAAGT CCTAACTGTT 19544
.......... .......... .......... .......... .......... .......... 430
TCTTTAAGTG TCATACTGCA AGTGCATTAT GGTCTATTAG GTTTAAAATG AAAAATAAGA 19604
.......... .......... .......... .......... .......... .......... 430
AAGTATATAT TTGTTATCTA GTATGCCTCG CCTAATTCCT TGGCATTTCT TCCATTCTTT 19664
.......... .......... .......... .......... .......... .......... 430
GAAACCCATA CTGGTGGAAC CTAGTTGAAG TGGTTCCTGT ACAAATACTC TCTGCACTGC 19724
.......... .......... .......... .......... .......... .......... 430
TTCTTCTCCC TTTCTTGTCG TGACAGCCTC TAGTCCCCAT ATATCCCATT ATGAATCTGC 19784
.......... .......... .......... .......... .......... .......... 430
TCACTCCCCC ATTTGGCTTC TTCCTAGGCC ACCACTCAAC AATTCTTCTG TTCTTGATGA 19844
.......... .......... .......... .......... .......... .......... 430
CTGCGATGCT CCATTCGATC TGGCAAATTG CTGCCTTGCT GGAGCTATTC AAGAACGTAG 19904
.......... .......... .......... .......... .......... .......... 430
AGGGTTACTG TGACATTAGC ATATCAAACC AACAGGTCTG TTGGAAATCA TAATCACAAT 19964
.......... .......... .......... .......... .......... .......... 430
GAACCTCCAA GTGGGAAATA TTATCCAGGG CGTCATCTTA CCTCCAAGTT ATGGACTCTG 20024
.......... .......... .......... .......... .......... .......... 430
CTTGACACTA GAGGAAGAGT TAGTGCACAG GGAGTCCAAA TCAGGTAGGA TAGTTGATAG 20084
.......... .......... .......... .......... .......... .......... 430
TTCATAATTG GCTAGATCTA GGAGGAGGTA TGTGAGTGAG AGTTTGGAAA ATCAGGGTAG 20144
.......... .......... .......... .......... .......... .......... 430
AATACAAGTT CAGGTTCCCT AGGACGATGA TATAATGTAG TACCATACTA CAAGAATTGA 20204
.......... .......... .......... .......... .......... .......... 430
CTATGGAATT TATTAATATC TAGCTAGAAA CCAATATAAA AAAACAATCT ACTCCCCTTT 20264
.......... .......... .......... .......... .......... .......... 430
CTACTGCTGC TGATACTTCT ACTCTTTTTT TTTTCTCTCT TGTACACCTT CTTGGCTGCT 20324
.......... .......... .......... .......... .......... .......... 430
ACACTTCTCT AGTTTCCAAT CATGACAATA CATAAATGCT TGAGGAGCCC ATAACAAATA 20384
.......... .......... .......... .......... .......... .......... 430
GTTCTACCCC ACCCACCCAC ACCCTTTCGT AGTAAAGTGT GCCGACAACA GTTGGTGCCC 20444
.......... .......... .......... .......... .......... .......... 430
TCTTCTCGAT GGTATCCATT GCTTTTCTGC ATGCACACAC AAACAAACAC TTCTAAATAC 20504
.......... .......... .......... .......... .......... .......... 430
ACATACTGAC TTGTCGTATT GGCATGCAGT CATGCATTGA GACCAAATCC ATCAGGACTG 20564
.......... .......... .......... .......... .......... .......... 430
CATCCGCACA ACACAAAATC TCACCATACA TGCATACGGT GTCTTGGATG TTTCTGTTGT 20624
.......... .......... .......... .......... .......... .......... 430
TGGGGCGCTA ATATGTACTT CTACCAAAAT GCAAGGACAA ACTGTCCCAA TTTTACAGTA 20684
.......... .......... .......... .......... .......... .......... 430
AAATAACTAT CATTGTGAAA CAGACTGTCA GCATCGCTCT CTAAGCTCAG TCTGTACAGC 20744
.......... .......... .......... .......... .......... .......... 430
TTTTACCAAA TAAAAATAAT GCAATGGTTT TTGGAAAGAA TAAAGGTTTT AGTGGCACAC 20804
.......... .......... .......... .......... .......... .......... 430
TAATTTCCAT AATTTGACCC TTCATGTTTA TGCTTTCAGT TCATTGGTAC TCCACATTGG 20864
| | || || || ||| ||||||
.......... .......... .......... .........T TTATCGGCAC TCCCCATTGG 451
ATGGCACCAG AGGTCATTCA AGAAAGTCGT TATGATGGAA AGGTATCATG CTATCATCTC 20924
|||||||||| | || ||||| |||||||||| |||||||| | ||
ATGGCACCAG AAGTTATTCA AGAAAGTCGT TATGATGGGA AG........ .......... 493
TACGGTGTTC AGCTATGGAA TTGTTCATTT TAGCAGCTTT TGTGGATGTT GCCATTTTAC 20984
.......... .......... .......... .......... .......... .......... 493
TCTAAAGACT TGGTGGCCGT AAATTTATGA TTGGGTTTTC AGTGAACAGG ATTTCTTTAA 21044
.......... .......... .......... .......... .......... .......... 493
TATTTTGTTT CTTTGGGTGT GGAATGTCCT TGCATATGGC AGAACAAGGT TACACGTAAA 21104
.......... .......... .......... .......... .......... .......... 493
TTCATAAAAG CCATTAAATA ATTGTTATGG AACCCCTGCC AGTGCCAAAA CATGTTTATT 21164
.......... .......... .......... .......... .......... .......... 493
TCTTTTCCTT GTCTCTTGAT GGTTCCTCAA GCAAAAAAAA AATAAAATAA AATCATTACC 21224
.......... .......... .......... .......... .......... .......... 493
TACTACTAAG CCTCCAAAAC AAGTCTACTG GTTGCAATTA GGGATGAAAA CGGATCGGAT 21284
.......... .......... .......... .......... .......... .......... 493
ACGGACGGAT ATCATCGATA TCATATTTGT TTTCGTATTT CTGGTCGAAT TCGGATTCGA 21344
.......... .......... .......... .......... .......... .......... 493
ATACGGATAA TGTCAACTAT ATCGGATAAG ATACGATTGG ATGTCGACAT CATAAATATA 21404
.......... .......... .......... .......... .......... .......... 493
TGATTTAAGT ACTCGGATAC GGATACGGTA TCGGATGTAG AACATTCGAA CTCGGATACG 21464
.......... .......... .......... .......... .......... .......... 493
AACTGGTCTG AATCCCTCTA AACGAATTCG GTCTCAAATA CGGTCGGAAA ATATCCGTAC 21524
.......... .......... .......... .......... .......... .......... 493
CGTTTTCATC CCTAGTTGCA ATGTTGAGAA AATTATTTTG GCAGCTGGAA TTCTTCCTTT 21584
.......... .......... .......... .......... .......... .......... 493
AGTTTGTCTT ACCAAAACAT TTGTTCTTGT TTCCTGCACC AGGTAGATGT TTGGGCATTA 21644
|||||||| ||||| |
.......... .......... .......... .......... ..GTAGATGT ATGGGCTCTT 511
GGTGTATCTG CAATTGAGAT GGCAGAGGTA GACATTGTTC CTTGCTTCTT TCTTTTTTTG 21704
|| || |||| | ||||| || ||| |||
GGAGTGTCTG CTATTGAAAT GGCGGAG... .......... .......... .......... 538
ACTGTACACT TTTGTTTTTA ATTTTGTGTC GTGACAATGC TTTTTAATAT TTATTTTGTA 21764
.......... .......... .......... .......... .......... .......... 538
TCTCTGACTG TAGGGCATGC CACCAAGATC CACTGTACAT CCAATGAGA 21813
|| | | | || || | || || ||| ||||||||
.......... ...GGTCTTC CTCCTAGGGC AACAGTGCAT CCAATGAGG 574
********************************************************************************
EST sequence 92 +strand (File: 13316811+)
1 GCACGAGGTA GTTATGGAGT ACTGTGGTGG TGGAAGTGTT GCTGATTTGA TAGGCATCAC
61 AGAGGAGCCT CTTGATGAAT CCCAAATAGC TTATATATGT AGAGAAGCAC TAAAGGGCCT
121 TGCTTACCTG CACTCCATTT TTAAAGTTCA TAGAGATATT AAGGGTGGCA ACATTCTTCT
181 AACTGAGCAA GGCGAGGTGA AGTTGGGTGA TTTTGGTGTA GCTGCCCAGC TGACAAGAAC
241 CATGTCAAAG CGCAACACGT TCATTGGTAC TCCACATTGG ATGGCACCAG AGGTCATTCA
301 AGAAAGTCGT TATGATGGAA AGGTAGATGT TTGGGCATTA CGTGTATC
Predicted gene structure (within gDNA segment 18521 to 21989):
Exon 1 18854 18967 ( 114 n); cDNA 1 115 ( 115 n); score: 0.956
Intron 1 18968 19065 ( 98 n); Pd: 0.000 (s: 1.00), Pa: 0.953 (s: 1.00)
Exon 2 19066 19156 ( 91 n); cDNA 116 206 ( 91 n); score: 1.000
Intron 2 19157 19270 ( 114 n); Pd: 0.984 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 3 19271 19323 ( 53 n); cDNA 207 259 ( 53 n); score: 1.000
Intron 3 19324 20843 (1520 n); Pd: 0.770 (s: 1.00), Pa: 0.962 (s: 1.00)
Exon 4 20844 20906 ( 63 n); cDNA 260 322 ( 63 n); score: 1.000
Intron 4 20907 21626 ( 720 n); Pd: 0.929 (s: 1.00), Pa: 0.999 (s: 0)
Exon 5 21627 21652 ( 26 n); cDNA 323 348 ( 26 n); score: 0.962
MATCH 21326110+ 13316811+ 0.984 347 0.997 C
PGS_21326110+_13316811+ (18854 18967,19066 19156,19271 19323,20844 20906,21627 21652)
Alignment (genomic DNA sequence = upper lines):
TTAC-AGATA GTTATGGAGT ACTGTGGTGG TGGAAGTGTT GCTGATTTGA TAGGCATCAC 18912
|| || || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCACGAGGTA GTTATGGAGT ACTGTGGTGG TGGAAGTGTT GCTGATTTGA TAGGCATCAC 60
AGAGGAGCCT CTTGATGAAT CCCAAATAGC TTATATATGT AGAGAAGCAC TAAAGGTTCT 18972
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||
AGAGGAGCCT CTTGATGAAT CCCAAATAGC TTATATATGT AGAGAAGCAC TAAAG..... 115
AACATAGTTG CATCAGATTT GAAGTATTTG CTGCCTTGTT GGGCAACTAA ATGTATTTGG 19032
.......... .......... .......... .......... .......... .......... 115
ATATTGAACT TTTGCGTGCT TATTTTCTTC CAGGGCCTTG CTTACCTGCA CTCCATTTTT 19092
||||||| |||||||||| ||||||||||
.......... .......... .......... ...GGCCTTG CTTACCTGCA CTCCATTTTT 142
AAAGTTCATA GAGATATTAA GGGTGGCAAC ATTCTTCTAA CTGAGCAAGG CGAGGTGAAG 19152
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAGTTCATA GAGATATTAA GGGTGGCAAC ATTCTTCTAA CTGAGCAAGG CGAGGTGAAG 202
TTGGGTAAGC ACATTTGTTT TCTTCAAAAG TTTTAGTTTG CATTCTTAGC ACCCATATTT 19212
||||
TTGG...... .......... .......... .......... .......... .......... 206
CTGCATGTCC TGACTCTGTG GTCGGCATGC TGTGGCGCCA CAACAATGTG CAAAACAGGT 19272
||
.......... .......... .......... .......... .......... ........GT 208
GATTTTGGTG TAGCTGCCCA GCTGACAAGA ACCATGTCAA AGCGCAACAC GGTATTCTAA 19332
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |
GATTTTGGTG TAGCTGCCCA GCTGACAAGA ACCATGTCAA AGCGCAACAC G......... 259
ACAGTGTTTG TTTTGCCATT CAAATCCATA GTTCAAGAAA CTTCACATCG ATGTAACAAA 19392
.......... .......... .......... .......... .......... .......... 259
CAAAATGAAG TGGCAGATGA AACTTGTCCA TGCCAGTTTA CCATAAGCGG ACCCATTTGT 19452
.......... .......... .......... .......... .......... .......... 259
GCTTGTGCAT AGTTCTTCAA TGTGATGGTA CTTTTATGGG AACTTGAAGC AAGTCTGTGT 19512
.......... .......... .......... .......... .......... .......... 259
TGGAAAATGA TTGCTGTGAA GTCCTAACTG TTTCTTTAAG TGTCATACTG CAAGTGCATT 19572
.......... .......... .......... .......... .......... .......... 259
ATGGTCTATT AGGTTTAAAA TGAAAAATAA GAAAGTATAT ATTTGTTATC TAGTATGCCT 19632
.......... .......... .......... .......... .......... .......... 259
CGCCTAATTC CTTGGCATTT CTTCCATTCT TTGAAACCCA TACTGGTGGA ACCTAGTTGA 19692
.......... .......... .......... .......... .......... .......... 259
AGTGGTTCCT GTACAAATAC TCTCTGCACT GCTTCTTCTC CCTTTCTTGT CGTGACAGCC 19752
.......... .......... .......... .......... .......... .......... 259
TCTAGTCCCC ATATATCCCA TTATGAATCT GCTCACTCCC CCATTTGGCT TCTTCCTAGG 19812
.......... .......... .......... .......... .......... .......... 259
CCACCACTCA ACAATTCTTC TGTTCTTGAT GACTGCGATG CTCCATTCGA TCTGGCAAAT 19872
.......... .......... .......... .......... .......... .......... 259
TGCTGCCTTG CTGGAGCTAT TCAAGAACGT AGAGGGTTAC TGTGACATTA GCATATCAAA 19932
.......... .......... .......... .......... .......... .......... 259
CCAACAGGTC TGTTGGAAAT CATAATCACA ATGAACCTCC AAGTGGGAAA TATTATCCAG 19992
.......... .......... .......... .......... .......... .......... 259
GGCGTCATCT TACCTCCAAG TTATGGACTC TGCTTGACAC TAGAGGAAGA GTTAGTGCAC 20052
.......... .......... .......... .......... .......... .......... 259
AGGGAGTCCA AATCAGGTAG GATAGTTGAT AGTTCATAAT TGGCTAGATC TAGGAGGAGG 20112
.......... .......... .......... .......... .......... .......... 259
TATGTGAGTG AGAGTTTGGA AAATCAGGGT AGAATACAAG TTCAGGTTCC CTAGGACGAT 20172
.......... .......... .......... .......... .......... .......... 259
GATATAATGT AGTACCATAC TACAAGAATT GACTATGGAA TTTATTAATA TCTAGCTAGA 20232
.......... .......... .......... .......... .......... .......... 259
AACCAATATA AAAAAACAAT CTACTCCCCT TTCTACTGCT GCTGATACTT CTACTCTTTT 20292
.......... .......... .......... .......... .......... .......... 259
TTTTTTCTCT CTTGTACACC TTCTTGGCTG CTACACTTCT CTAGTTTCCA ATCATGACAA 20352
.......... .......... .......... .......... .......... .......... 259
TACATAAATG CTTGAGGAGC CCATAACAAA TAGTTCTACC CCACCCACCC ACACCCTTTC 20412
.......... .......... .......... .......... .......... .......... 259
GTAGTAAAGT GTGCCGACAA CAGTTGGTGC CCTCTTCTCG ATGGTATCCA TTGCTTTTCT 20472
.......... .......... .......... .......... .......... .......... 259
GCATGCACAC ACAAACAAAC ACTTCTAAAT ACACATACTG ACTTGTCGTA TTGGCATGCA 20532
.......... .......... .......... .......... .......... .......... 259
GTCATGCATT GAGACCAAAT CCATCAGGAC TGCATCCGCA CAACACAAAA TCTCACCATA 20592
.......... .......... .......... .......... .......... .......... 259
CATGCATACG GTGTCTTGGA TGTTTCTGTT GTTGGGGCGC TAATATGTAC TTCTACCAAA 20652
.......... .......... .......... .......... .......... .......... 259
ATGCAAGGAC AAACTGTCCC AATTTTACAG TAAAATAACT ATCATTGTGA AACAGACTGT 20712
.......... .......... .......... .......... .......... .......... 259
CAGCATCGCT CTCTAAGCTC AGTCTGTACA GCTTTTACCA AATAAAAATA ATGCAATGGT 20772
.......... .......... .......... .......... .......... .......... 259
TTTTGGAAAG AATAAAGGTT TTAGTGGCAC ACTAATTTCC ATAATTTGAC CCTTCATGTT 20832
.......... .......... .......... .......... .......... .......... 259
TATGCTTTCA GTTCATTGGT ACTCCACATT GGATGGCACC AGAGGTCATT CAAGAAAGTC 20892
||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .TTCATTGGT ACTCCACATT GGATGGCACC AGAGGTCATT CAAGAAAGTC 308
GTTATGATGG AAAGGTATCA TGCTATCATC TCTACGGTGT TCAGCTATGG AATTGTTCAT 20952
|||||||||| ||||
GTTATGATGG AAAG...... .......... .......... .......... .......... 322
TTTAGCAGCT TTTGTGGATG TTGCCATTTT ACTCTAAAGA CTTGGTGGCC GTAAATTTAT 21012
.......... .......... .......... .......... .......... .......... 322
GATTGGGTTT TCAGTGAACA GGATTTCTTT AATATTTTGT TTCTTTGGGT GTGGAATGTC 21072
.......... .......... .......... .......... .......... .......... 322
CTTGCATATG GCAGAACAAG GTTACACGTA AATTCATAAA AGCCATTAAA TAATTGTTAT 21132
.......... .......... .......... .......... .......... .......... 322
GGAACCCCTG CCAGTGCCAA AACATGTTTA TTTCTTTTCC TTGTCTCTTG ATGGTTCCTC 21192
.......... .......... .......... .......... .......... .......... 322
AAGCAAAAAA AAAATAAAAT AAAATCATTA CCTACTACTA AGCCTCCAAA ACAAGTCTAC 21252
.......... .......... .......... .......... .......... .......... 322
TGGTTGCAAT TAGGGATGAA AACGGATCGG ATACGGACGG ATATCATCGA TATCATATTT 21312
.......... .......... .......... .......... .......... .......... 322
GTTTTCGTAT TTCTGGTCGA ATTCGGATTC GAATACGGAT AATGTCAACT ATATCGGATA 21372
.......... .......... .......... .......... .......... .......... 322
AGATACGATT GGATGTCGAC ATCATAAATA TATGATTTAA GTACTCGGAT ACGGATACGG 21432
.......... .......... .......... .......... .......... .......... 322
TATCGGATGT AGAACATTCG AACTCGGATA CGAACTGGTC TGAATCCCTC TAAACGAATT 21492
.......... .......... .......... .......... .......... .......... 322
CGGTCTCAAA TACGGTCGGA AAATATCCGT ACCGTTTTCA TCCCTAGTTG CAATGTTGAG 21552
.......... .......... .......... .......... .......... .......... 322
AAAATTATTT TGGCAGCTGG AATTCTTCCT TTAGTTTGTC TTACCAAAAC ATTTGTTCTT 21612
.......... .......... .......... .......... .......... .......... 322
GTTTCCTGCA CCAGGTAGAT GTTTGGGCAT TAGGTGTATC 21652
|||||| |||||||||| || |||||||
.......... ....GTAGAT GTTTGGGCAT TACGTGTATC 348
********************************************************************************
EST sequence 153 +strand (File: 13263258+)
1 CAGCTCTTGA CGAACCGCGA ATAGCTTATA TATGATCGAG AAACACTAAA GGGTCTTGCT
61 TACTTGCACA CAATTTTCAA AGTTCATAGA GATATTAAGG GTGGCAACAT TCTACTGACT
121 GAGCAAGGCG AGGTGAAGTT GGGCGATTTT GGTGTTGCTG CCCAACTGGC GAAGAACCAT
181 GTCAAAGCGC AACACGTTCA TCGGTACTCC ACACTGGATG GCACCAGAGG TCATTCAAGA
241 GAGTCGGTTT GATGGGAAGG TAGATGTTTG AGCTCTTGGA GAGACTGCAT TAGAGATGGC
301 ATAGGGCATG CCACCGAGAT CCACTGTGCA TCCAATGAGA GTGATCTTCA TGATATCTAG
361 TGAACGTGCA ACGATGCTGG AGGATAAGGA GAAAGGGTCT TTTCTCTTTG CAGAATATAA
421 TGGCCAAGGC CCTTACAAGG GATGCGGGAC TCCGGGCCGG TGGGATGGAG ATGCTTAGGC
481 GAAAATTATT TGGAAGTGCG GCACTGGGGG CTTTGAAATT GGTGGGCGAG GATTCGGGGG
541 CCAAGATCAT GCAAGAAACC GGTGGGCGAA ACAACCTGCG TTGCTTTCAA GGATGAATGG
601 GAAGCGAACG TTCGAATTTT TTTAAAAATT GGAAAAAATG GTTGTTTTAA CATTGGGGTA
661 AGTCGATTAG AAAAACAAAT ATATGGTTCA GGAGGTGAAT TTGTGGTAAT TAATGGAAAA
721 TCTAAAAAAT AGAGAAAAAA AAATTGAAAT TATTAGATTT GTAAAAAGAA AAAATATAAT
781 TAGTGATTAT GAGATTAAAT TTTATAAATC AAAAATAAAA AAGACAAACA CTTTTTAAAA
841 TCTCTTAACC GAATAAAACT ATTTTTAATA CCGATAAAGA GCCAAAATAT AGGATAT
Predicted gene structure (within gDNA segment 18542 to 25325):
Exon 1 18917 18967 ( 51 n); cDNA 1 51 ( 51 n); score: 0.804
Intron 1 18968 19065 ( 98 n); Pd: 0.000 (s: 0.82), Pa: 0.953 (s: 0.90)
Exon 2 19066 19156 ( 91 n); cDNA 52 142 ( 91 n); score: 0.923
Intron 2 19157 19270 ( 114 n); Pd: 0.984 (s: 0.96), Pa: 0.000 (s: 0.88)
Exon 3 19271 19323 ( 53 n); cDNA 143 196 ( 54 n); score: 0.887
Intron 3 19324 20843 (1520 n); Pd: 0.770 (s: 0.90), Pa: 0.962 (s: 0.94)
Exon 4 20844 20906 ( 63 n); cDNA 197 259 ( 63 n); score: 0.905
Intron 4 20907 21626 ( 720 n); Pd: 0.929 (s: 0.90), Pa: 0.999 (s: 0.76)
Exon 5 21627 21671 ( 45 n); cDNA 260 304 ( 45 n); score: 0.756
Intron 5 21672 21777 ( 106 n); Pd: 0.992 (s: 0.76), Pa: 0.998 (s: 0)
Exon 6 21778 21813 ( 36 n); cDNA 305 340 ( 36 n); score: 0.944
Intron 6 21814 22451 ( 638 n); Pd: 0.596 (s: 0), Pa: 0.894 (s: 0.88)
Exon 7 22452 22507 ( 56 n); cDNA 341 396 ( 56 n); score: 0.875
Intron 7 22508 24146 (1639 n); Pd: 0.999 (s: 0.88), Pa: 0.412 (s: 0.61)
Exon 8 24147 24228 ( 82 n); cDNA 397 479 ( 83 n); score: 0.622
Intron 8 24229 24336 ( 108 n); Pd: 0.996 (s: 0.62), Pa: 0.906 (s: 0.62)
Exon 9 24337 24453 ( 117 n); cDNA 480 593 ( 114 n); score: 0.556
Intron 9 24454 24535 ( 82 n); Pd: 0.963 (s: 0.46), Pa: 0.997 (s: 0.54)
Exon 10 24536 24641 ( 106 n); cDNA 594 695 ( 102 n); score: 0.491
Intron 10 24642 25178 ( 537 n); Pd: 0.994 (s: 0.47), Pa: 0.000 (s: 0.70)
Exon 11 25179 25278 ( 100 n); cDNA 696 791 ( 96 n); score: 0.630
MATCH 21326110+ 13263258+ 0.708 800 0.892 C
PGS_21326110+_13263258+ (18917 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22507,24147 24228,24337 24453,24536 24641,25179 25278)
Alignment (genomic DNA sequence = upper lines):
GAGCCTCTTG ATGAATCCCA AATAGCTTAT ATATG-TAGA GAAGCACTAA AGGTTCTAAC 18975
|| |||||| | ||| | | |||||||||| ||||| | || ||| |||||| ||
CAG-CTCTTG ACGAACCGCG AATAGCTTAT ATATGATCGA GAAACACTAA AG........ 51
ATAGTTGCAT CAGATTTGAA GTATTTGCTG CCTTGTTGGG CAACTAAATG TATTTGGATA 19035
.......... .......... .......... .......... .......... .......... 51
TTGAACTTTT GCGTGCTTAT TTTCTTCCAG GGCCTTGCTT ACCTGCACTC CATTTTTAAA 19095
|| ||||||| || ||||| | ||||| |||
.......... .......... .......... GGTCTTGCTT ACTTGCACAC AATTTTCAAA 81
GTTCATAGAG ATATTAAGGG TGGCAACATT CTTCTAACTG AGCAAGGCGA GGTGAAGTTG 19155
|||||||||| |||||||||| |||||||||| || || |||| |||||||||| ||||||||||
GTTCATAGAG ATATTAAGGG TGGCAACATT CTACTGACTG AGCAAGGCGA GGTGAAGTTG 141
GGTAAGCACA TTTGTTTTCT TCAAAAGTTT TAGTTTGCAT TCTTAGCACC CATATTTCTG 19215
|
G......... .......... .......... .......... .......... .......... 142
CATGTCCTGA CTCTGTGGTC GGCATGCTGT GGCGCCACAA CAATGTGCAA AACAGGTGAT 19275
| |||
.......... .......... .......... .......... .......... .....GCGAT 147
TTTGGTGTAG CTGCCCAGCT GAC-AAGAAC CATGTCAAAG CGCAACACGG TATTCTAAAC 19334
|||||||| | ||||||| || | | |||||| |||||||||| |||||||||
TTTGGTGTTG CTGCCCAACT GGCGAAGAAC CATGTCAAAG CGCAACACG. .......... 196
AGTGTTTGTT TTGCCATTCA AATCCATAGT TCAAGAAACT TCACATCGAT GTAACAAACA 19394
.......... .......... .......... .......... .......... .......... 196
AAATGAAGTG GCAGATGAAA CTTGTCCATG CCAGTTTACC ATAAGCGGAC CCATTTGTGC 19454
.......... .......... .......... .......... .......... .......... 196
TTGTGCATAG TTCTTCAATG TGATGGTACT TTTATGGGAA CTTGAAGCAA GTCTGTGTTG 19514
.......... .......... .......... .......... .......... .......... 196
GAAAATGATT GCTGTGAAGT CCTAACTGTT TCTTTAAGTG TCATACTGCA AGTGCATTAT 19574
.......... .......... .......... .......... .......... .......... 196
GGTCTATTAG GTTTAAAATG AAAAATAAGA AAGTATATAT TTGTTATCTA GTATGCCTCG 19634
.......... .......... .......... .......... .......... .......... 196
CCTAATTCCT TGGCATTTCT TCCATTCTTT GAAACCCATA CTGGTGGAAC CTAGTTGAAG 19694
.......... .......... .......... .......... .......... .......... 196
TGGTTCCTGT ACAAATACTC TCTGCACTGC TTCTTCTCCC TTTCTTGTCG TGACAGCCTC 19754
.......... .......... .......... .......... .......... .......... 196
TAGTCCCCAT ATATCCCATT ATGAATCTGC TCACTCCCCC ATTTGGCTTC TTCCTAGGCC 19814
.......... .......... .......... .......... .......... .......... 196
ACCACTCAAC AATTCTTCTG TTCTTGATGA CTGCGATGCT CCATTCGATC TGGCAAATTG 19874
.......... .......... .......... .......... .......... .......... 196
CTGCCTTGCT GGAGCTATTC AAGAACGTAG AGGGTTACTG TGACATTAGC ATATCAAACC 19934
.......... .......... .......... .......... .......... .......... 196
AACAGGTCTG TTGGAAATCA TAATCACAAT GAACCTCCAA GTGGGAAATA TTATCCAGGG 19994
.......... .......... .......... .......... .......... .......... 196
CGTCATCTTA CCTCCAAGTT ATGGACTCTG CTTGACACTA GAGGAAGAGT TAGTGCACAG 20054
.......... .......... .......... .......... .......... .......... 196
GGAGTCCAAA TCAGGTAGGA TAGTTGATAG TTCATAATTG GCTAGATCTA GGAGGAGGTA 20114
.......... .......... .......... .......... .......... .......... 196
TGTGAGTGAG AGTTTGGAAA ATCAGGGTAG AATACAAGTT CAGGTTCCCT AGGACGATGA 20174
.......... .......... .......... .......... .......... .......... 196
TATAATGTAG TACCATACTA CAAGAATTGA CTATGGAATT TATTAATATC TAGCTAGAAA 20234
.......... .......... .......... .......... .......... .......... 196
CCAATATAAA AAAACAATCT ACTCCCCTTT CTACTGCTGC TGATACTTCT ACTCTTTTTT 20294
.......... .......... .......... .......... .......... .......... 196
TTTTCTCTCT TGTACACCTT CTTGGCTGCT ACACTTCTCT AGTTTCCAAT CATGACAATA 20354
.......... .......... .......... .......... .......... .......... 196
CATAAATGCT TGAGGAGCCC ATAACAAATA GTTCTACCCC ACCCACCCAC ACCCTTTCGT 20414
.......... .......... .......... .......... .......... .......... 196
AGTAAAGTGT GCCGACAACA GTTGGTGCCC TCTTCTCGAT GGTATCCATT GCTTTTCTGC 20474
.......... .......... .......... .......... .......... .......... 196
ATGCACACAC AAACAAACAC TTCTAAATAC ACATACTGAC TTGTCGTATT GGCATGCAGT 20534
.......... .......... .......... .......... .......... .......... 196
CATGCATTGA GACCAAATCC ATCAGGACTG CATCCGCACA ACACAAAATC TCACCATACA 20594
.......... .......... .......... .......... .......... .......... 196
TGCATACGGT GTCTTGGATG TTTCTGTTGT TGGGGCGCTA ATATGTACTT CTACCAAAAT 20654
.......... .......... .......... .......... .......... .......... 196
GCAAGGACAA ACTGTCCCAA TTTTACAGTA AAATAACTAT CATTGTGAAA CAGACTGTCA 20714
.......... .......... .......... .......... .......... .......... 196
GCATCGCTCT CTAAGCTCAG TCTGTACAGC TTTTACCAAA TAAAAATAAT GCAATGGTTT 20774
.......... .......... .......... .......... .......... .......... 196
TTGGAAAGAA TAAAGGTTTT AGTGGCACAC TAATTTCCAT AATTTGACCC TTCATGTTTA 20834
.......... .......... .......... .......... .......... .......... 196
TGCTTTCAGT TCATTGGTAC TCCACATTGG ATGGCACCAG AGGTCATTCA AGAAAGTCGT 20894
| |||| ||||| |||||| ||| |||||||||| |||||||||| ||| |||||
.........T TCATCGGTAC TCCACACTGG ATGGCACCAG AGGTCATTCA AGAGAGTCGG 247
TATGATGGAA AGGTATCATG CTATCATCTC TACGGTGTTC AGCTATGGAA TTGTTCATTT 20954
| |||||| | ||
TTTGATGGGA AG........ .......... .......... .......... .......... 259
TAGCAGCTTT TGTGGATGTT GCCATTTTAC TCTAAAGACT TGGTGGCCGT AAATTTATGA 21014
.......... .......... .......... .......... .......... .......... 259
TTGGGTTTTC AGTGAACAGG ATTTCTTTAA TATTTTGTTT CTTTGGGTGT GGAATGTCCT 21074
.......... .......... .......... .......... .......... .......... 259
TGCATATGGC AGAACAAGGT TACACGTAAA TTCATAAAAG CCATTAAATA ATTGTTATGG 21134
.......... .......... .......... .......... .......... .......... 259
AACCCCTGCC AGTGCCAAAA CATGTTTATT TCTTTTCCTT GTCTCTTGAT GGTTCCTCAA 21194
.......... .......... .......... .......... .......... .......... 259
GCAAAAAAAA AATAAAATAA AATCATTACC TACTACTAAG CCTCCAAAAC AAGTCTACTG 21254
.......... .......... .......... .......... .......... .......... 259
GTTGCAATTA GGGATGAAAA CGGATCGGAT ACGGACGGAT ATCATCGATA TCATATTTGT 21314
.......... .......... .......... .......... .......... .......... 259
TTTCGTATTT CTGGTCGAAT TCGGATTCGA ATACGGATAA TGTCAACTAT ATCGGATAAG 21374
.......... .......... .......... .......... .......... .......... 259
ATACGATTGG ATGTCGACAT CATAAATATA TGATTTAAGT ACTCGGATAC GGATACGGTA 21434
.......... .......... .......... .......... .......... .......... 259
TCGGATGTAG AACATTCGAA CTCGGATACG AACTGGTCTG AATCCCTCTA AACGAATTCG 21494
.......... .......... .......... .......... .......... .......... 259
GTCTCAAATA CGGTCGGAAA ATATCCGTAC CGTTTTCATC CCTAGTTGCA ATGTTGAGAA 21554
.......... .......... .......... .......... .......... .......... 259
AATTATTTTG GCAGCTGGAA TTCTTCCTTT AGTTTGTCTT ACCAAAACAT TTGTTCTTGT 21614
.......... .......... .......... .......... .......... .......... 259
TTCCTGCACC AGGTAGATGT TTGGGCATTA GGTGTATCTG CAATTGAGAT GGCAGAGGTA 21674
|||||||| ||| || | || | ||| || | ||||| |||| ||
.......... ..GTAGATGT TTGAGCTCTT GGAGAGACTG CATTAGAGAT GGCATAG... 304
GACATTGTTC CTTGCTTCTT TCTTTTTTTG ACTGTACACT TTTGTTTTTA ATTTTGTGTC 21734
.......... .......... .......... .......... .......... .......... 304
GTGACAATGC TTTTTAATAT TTATTTTGTA TCTCTGACTG TAGGGCATGC CACCAAGATC 21794
||||||| |||| |||||
.......... .......... .......... .......... ...GGCATGC CACCGAGATC 321
CACTGTACAT CCAATGAGAG TAAGAGATGC TTCTCAATGC CTGTTAGTAT CTGCAGTTAA 21854
|||||| ||| |||||||||
CACTGTGCAT CCAATGAGA. .......... .......... .......... .......... 340
TGAGGCTAAT AGGTTATAAC AGAATTAAAA AAATCTGCTC TATCTTTGGT GCACTGTACT 21914
.......... .......... .......... .......... .......... .......... 340
TTTTATCTCT TTACTGTCAA GGGCGTCGAG GGACAGGGTA GGAGGATCCC GGCTACGTAG 21974
.......... .......... .......... .......... .......... .......... 340
TTCATAGACC AATCTGTGGT GTGGGGCGGA GGTTTTACCC CTCAGTGCCC GATTGTTTCA 22034
.......... .......... .......... .......... .......... .......... 340
GCAAAGGTAG ATTAGGGAAT TGGGATAATT GTTCTTTCTT GATTATCATC ATACGAGTAC 22094
.......... .......... .......... .......... .......... .......... 340
AAGAATATAT AGGCCATTCG GCCATAACAG CTTGGAGCCA ATTGCTCCTA AATCTAAGGC 22154
.......... .......... .......... .......... .......... .......... 340
CATTATCGGC TCTCCTGCCT TCTAGGCTCT CGCCTGTTCA GTGTGCTCTG CATGCGTGGT 22214
.......... .......... .......... .......... .......... .......... 340
GACCGCGCCT ACGGTTCTGC TGGTGCGCCA TCTGCGGCTC TGCGAGCATC CTGGGCGTGC 22274
.......... .......... .......... .......... .......... .......... 340
CGTTTCCTTG TGTAGGCGCG GTCCCACATG ACATTTACTT TCTTTCTGAT GCATTTGCTT 22334
.......... .......... .......... .......... .......... .......... 340
CTTTACTTTG CCTTGGTAAA TATTTGGTAT ACATATCAAT ATATTGTTTC ATCTTCGTTT 22394
.......... .......... .......... .......... .......... .......... 340
AGCATGAATG CTTGATAGAC CGACTAACGA TCTCTCTTCC CCCTTCCCTT ATCTCAGGTT 22454
||
.......... .......... .......... .......... .......... .......GTG 343
ATCTTCATGA TATCCAGTGA ACCAGCACCA ATGCTGGAGG ATAAGGAGAA ATGGTAAGTG 22514
|||||||||| |||| ||||| || ||| | |||||||||| |||||||||| | |
ATCTTCATGA TATCTAGTGA ACGTGCAACG ATGCTGGAGG ATAAGGAGAA AGG....... 396
GTTTCTAGTA ATCATGTAAT TGTTTTGCCT ATTTTGAATA GTGGACGGTC TCATCAGACC 22574
.......... .......... .......... .......... .......... .......... 396
TAATATTTGC AATATCAGAT TTTTAAGTGC CTAGACATAG GGATCTGGCT GAGGTTTCTT 22634
.......... .......... .......... .......... .......... .......... 396
TTGACCTGCA ACAAAATCAA TATAAATACT ATAAACAACT ATTCAAACTA GAGGCACTCA 22694
.......... .......... .......... .......... .......... .......... 396
TCCAAACAAA ACCATTACTG GGATTGAAAA CTGAGGATTT AATCAGTTAG TTGTCAGTAC 22754
.......... .......... .......... .......... .......... .......... 396
TATTTTCCCA GTATACTCCT TTCGATTTGT GTGGATTTGG GGCATATTAT AGCTTGAAGA 22814
.......... .......... .......... .......... .......... .......... 396
TATAGTAAAT ACTAAATAGT ATAGAAAGTG AAAAAACTAA TGAGCAGAAA TAAATGCTGC 22874
.......... .......... .......... .......... .......... .......... 396
CTTTCTATTA ATTGAGTTTT TGTGCTATCT CCGTCCTCTT CTGATTGGCT TCTACAATCG 22934
.......... .......... .......... .......... .......... .......... 396
ACCGAACCTT TTACCTATGA TCAAAGCATT TATGTTGCCT GCTTAAATTT ACCTTGTTGG 22994
.......... .......... .......... .......... .......... .......... 396
TCTGAATTGT ATGAGAGAGT AGCGGTACAG CTTGATGGAA GTTCCAGCTA GTTTTTCCCC 23054
.......... .......... .......... .......... .......... .......... 396
CCTCCTTGGG CTATGCAGGA GAGCTGCATG TTACTTCATT AATTAAGAGA GAAAAAAGAG 23114
.......... .......... .......... .......... .......... .......... 396
TACAAGAGCG AGGCAAAAAC AGCCCCACCT AAACCCAGTT ATATATAAAA CCCATACCAC 23174
.......... .......... .......... .......... .......... .......... 396
TGACTATAGA ACACGACGAA GGGAGATCAA ACCGCCAACC AGAAACTATA AGGTTCTGTG 23234
.......... .......... .......... .......... .......... .......... 396
GCAATCAACC TTAGACCATG TCCTGGAGGT TAGAAGCTCC TGCCATGCAC CAAGAGCTAC 23294
.......... .......... .......... .......... .......... .......... 396
AGTCATCAGC AACCTTTTGT AGAAGGCTCT GAATATTAGG AGAAAGTCCC TAAACACACA 23354
.......... .......... .......... .......... .......... .......... 396
GACATTCCTA AATTTCCATA CTTTCCAGGC CACCAAAATA ATAAGGGAAT TCAGCTCCTT 23414
.......... .......... .......... .......... .......... .......... 396
GCGTATCTCC TTGGGTGTAT TTCTAATGGT GTTTCCCCAT CATCCGAAGA AATGAGTTGC 23474
.......... .......... .......... .......... .......... .......... 396
ATCGATCAGA GGTGTCAAAG CCGCTATGGA AAGTTTGTGA AAAAACGAAG TGTAAACACA 23534
.......... .......... .......... .......... .......... .......... 396
GGAGACAAGG ATGTGCTGGA TTGTCTCAGC CTGATCACAA ATAGGGCAAG CAGGATGGTG 23594
.......... .......... .......... .......... .......... .......... 396
GGGCGGGCAG CCCACGCTTG GCGAGGCGAT CAGCCATCCA ACACCAATTA TTGATGGCTA 23654
.......... .......... .......... .......... .......... .......... 396
ACCAAAGGAA GAATTTGCAT TTGAGAGGGG CCCAGCTTTT TCAAATCCTT TTCCAGGGAC 23714
.......... .......... .......... .......... .......... .......... 396
CAAATGTGAC AGTCATACAG TTCTCTTTAT CATTGCTCAG TGTTTGGTTT AAGAAGCTGC 23774
.......... .......... .......... .......... .......... .......... 396
CAAATTTTGT CCTTCGCTTT AAGATTAAAT AGGCTTTGAA AACATCAGTC TCCTCGACAT 23834
.......... .......... .......... .......... .......... .......... 396
ATATGAAACA CCATATTCAG GACCCCTAAC TTATCTAGAG CATAAAGATC TTTTCTGAAA 23894
.......... .......... .......... .......... .......... .......... 396
GGGGGAATTG CACAACTATT GGCTACTAAA TTTGTTTTTA GCATTTTGCT TAGACATTAT 23954
.......... .......... .......... .......... .......... .......... 396
CACACTAACA CTAGTCGGGC CTTTCTTCTT TCTCCTTATT CCGACACATG TCTTTGTCAT 24014
.......... .......... .......... .......... .......... .......... 396
GACACTGGTG TGTGTGTGTT GGAACTCTCT TCTTTTAATG CAATGATACA ACTCTCCTGC 24074
.......... .......... .......... .......... .......... .......... 396
ATGTCCCAAA AAAAAAGGCA ATAGAAGTTT TAACCATCAG TTGGCCTAAG TTCTTGTTAT 24134
.......... .......... .......... .......... .......... .......... 396
CCTGACCTTC AGGTCTCTAC TC-TTCCATG ATTTTATTGC AAAGTGTCTA ACAAAAGATC 24193
|||| | | || || || || | || || ||| || |||| |||
.......... ..GTCTTTTC TCTTTGCAGA ATATAATGGC CAAGGCCCTT ACAAGGGATG 444
CAAGACTTCG GCCTGCTGCA AGTGAGATGG TGAAGGTACT TATTTTTTTT TTCTCAAAGA 24253
| |||| || | | | || | |||||| | | |
CGGGACTCCG GGCCGGTGGG ATGGAGATGC TTAGG..... .......... .......... 479
TGATGTTTAT GGTGCATTTC ATGATCTCTT ATTTACATAT TTATTTGTCA TTGTTTCTGT 24313
.......... .......... .......... .......... .......... .......... 479
TTTCTTCCAA ATTCGCCTTG CAGCACAAAT TTATTGAGAA GTGCAATAGT GGAG-CTTCA 24372
| ||| ||||| ||| |||| | | || | |||
.......... .......... ...C-GAAAA TTATTTGGAA GTGCGGCACT GGGGGCTTTG 515
AAAAT-GTTG GCGAAGATCA AGGAAGCGAA GAAGATTAGA GCCACACTTG CTGTGCAAAA 24431
||| | || | |||| ||| || || || || || | | | || | || || |||
AAATTGGTGG GCGAGGAT-T CGGGGGCCAA GATCATGCAA G--AAAC-CG GTGGGCGAAA 571
TGAACTGTCT GACCCTGACA ATGTATGCCA CATAGTTGTT ACTGTTATGT GTGGGTTGGT 24491
| ||| | | | |
CAACCTGCGT TGCTTTCAAG GA........ .......... .......... .......... 593
TATGCTATTT CACTTGACGT CAATATTTAC TTTGGTATCT GCAGACAATG CAAGATGTGC 24551
|||| | | | |
.......... .......... .......... .......... ....TGAATG GGA-A-GCGA 607
CTGTTCGAAT AAATGAAGAC TATGGGGAAA CTGTTCCTAC AAATTCTCAG CAACACATGA 24611
|||||||| | | | ||| ||| || | | || | | | | ||
ACGTTCGAAT TTTTTTAAAA ATTGGAAAAA ATGGTTGTTT TAACATTGGG GTA-AGTCGA 666
ATCATGGGAC ATATA-ATGA TTGTCAGGCA GGTAAATTTC CTTTTTGTGA GTTCTTTATT 24670
| || | ||| ||| | ||||| |
TTAGAAAAAC AAATATATG- GT-TCAGGAG G......... .......... .......... 695
TAAATAATAC ACGAGTCTTA GCATTCCTTT TGAATGCCAC CAATACATGT AAGATTAAAA 24730
.......... .......... .......... .......... .......... .......... 695
CTGCCTTTTC TTCTGAGTCT TTTGTCTAGC AACTGTGATG TCAACTCAGT ATTACATATT 24790
.......... .......... .......... .......... .......... .......... 695
TCTATGGCTT GCTCATAACA GTTTGTATGG ATTTTATTCA ATAGCTACTT AGGAGTTTTT 24850
.......... .......... .......... .......... .......... .......... 695
ATGGATATCT TGGTGGGCAG GTTATCCTGT TGTTCCTTGA ATGTGACGCT TCTAAATATA 24910
.......... .......... .......... .......... .......... .......... 695
GTGCTGTTTC ATACTTACTC TGAATCTCTG ATCCCTTATA TAAGTCCATT AGGACATCAA 24970
.......... .......... .......... .......... .......... .......... 695
TACAGTCTCC AATATGGCAC TTTGACTAAC AATATTTATA GAAAGGAAGA AGTCTACATA 25030
.......... .......... .......... .......... .......... .......... 695
ACCCCCAAAT TATCTAGGGT GGAATACTTC ATCCCCCAAA CTATAAAACC GGATATTCTA 25090
.......... .......... .......... .......... .......... .......... 695
CCCCCTGAAC TTTCAAAACC GGTCAAATAA CCCTCTAGAG TGGTTTTAGA GGGTGGTTTT 25150
.......... .......... .......... .......... .......... .......... 695
ATATTTTTCT TTTTTTATTT ATTTTCGCTG AATCTTTGAA AAATCATAAT AAATCATAGA 25210
|| ||| | || || | || ||||| || |
.......... .......... ........TG AATTTGTGGT AATTAATGGA AAATC-TA-A 725
AAAATCATAA AATAAAAAAA TTAATTTTAT TGGACTCCTG ATGAGCTACA CAGTGAATAT 25270
||||| | | || ||||||| || | |||| | || | | | || | | | | ||
AAAAT-AGAG AA-AAAAAAA TTGAAATTAT TAGATTTGTA AAAAGAAAAA ATATAATTAG 783
ATAATATG 25278
| ||||
TGATTATG 791
********************************************************************************
EST sequence 196 +strand (File: MTtuc02-12-15.10061+)
1 GCGGGACAGA TAGATTTCTT CTCACACTCT TTGCAGTTTG AAAAAATGGA TCGGGGCTCT
61 TTCTCCCCGC GAACCCGAAA TACCCGACCC AAATCCGATA TCTACTCTAC TTTCGTAATC
121 CATAACGACG ACGATGACGA CGGAGAAACC AACCGGCGGC GGAAAACCGC CAGCGCGGAA
181 GCACAGGAAG ATCCATACGC AACAATGAAG TTCAAAGACA ACGGCCACGA TGACAACGAC
241 GATGATGAAG ATGAAGATTC CTTTCTCCCT CCGCTTCTCA AACGTCTTCC CAAGGACTTC
301 GGCGGCGGAG CATCGATGGA TTACGACGAT GACGAAGATG AATCTGGTGA TTTCGGTACT
361 ATGATCGTGA AAAACGATCG GAGCCGGCAG CGAGATCGGT CTTCTTCCGG TGTGGCTTCA
421 CCGGCGGGAT TGACGTGGAA GACCGGGAAT TCTTCTCAGG TGACTGCTTT GAACGATGAG
481 GATGATGATG ACGGAGGTGG ATTTTCGACT TTTGTGATGC GGTCGACGGT GAGGAATAGC
541 GAGAGAGAGT CTGTGAGTGG AACGATGGTG CGAAGGACCG AGCGGAAATG ATGGCGGTGG
601 TGGTTCGACG ATGGAGAGAG CGATTGCGAG TGTATGCAAG GTGTGG
Predicted gene structure (within gDNA segment 16789 to 19586):
Exon 1 17513 17608 ( 96 n); cDNA 238 333 ( 96 n); score: 0.677
Intron 1 17609 18626 (1018 n); Pd: 0.000 (s: 0.66), Pa: 0.998 (s: 0)
Exon 2 18627 18643 ( 17 n); cDNA 334 350 ( 17 n); score: 0.706
Intron 2 18644 18863 ( 220 n); Pd: 0.000 (s: 0), Pa: 0.519 (s: 0)
Exon 3 18864 18887 ( 24 n); cDNA 351 372 ( 22 n); score: 0.708
MATCH 21326110+ MTtuc02-12-15.10061+ 0.677 137 0.212 C
PGS_21326110+_MTtuc02-12-15.10061+ (17513 17608,18627 18643,18864 18887)
Alignment (genomic DNA sequence = upper lines):
GAAGACGAGG AGGAAGACCC CTCCTCGCTG CCTCCGCTTC TCCAGCGGCT CCCCAAGGAC 17572
|| || || | | || || |||| || |||||||||| || | || || |||||||||
GACGATGATG AAGATGAAGA TTCCTTTCTC CCTCCGCTTC TCAAACGTCT TCCCAAGGAC 297
TTCGGCGGCC CCTCCTTTGA CGAAGACGAG GACGCCTACT CCTCCGACCC CGACGATGCT 17632
||||||||| | | || |||| || | |
TTCGGCGGCG GAGCATCGAT GGATTACGAC GATGAC.... .......... .......... 333
TCCCTCTCCG CTACGGTGGT CTTCAAGAGC GGCGCCCCGG CCTCCGCTCG ATCTCCGTTC 17692
.......... .......... .......... .......... .......... .......... 333
CTGGATCTGC GGCGCTCCAG CCCCCGCGCT ACCGATGACG ACCCATACTC TACCTTCGTC 17752
.......... .......... .......... .......... .......... .......... 333
GTCCACTCCA CCGCACGCTC GGGGGGGACC TCCTCCAGCC CTCGAGGGTC CGCCTCAGGC 17812
.......... .......... .......... .......... .......... .......... 333
ACATTCATCC GTCGCTCCGG GGGCTCGTCC AGCCCTCACG AATCCGTCTC TGGCACATTC 17872
.......... .......... .......... .......... .......... .......... 333
ATCCGCCGGA CTAGCACCCC GTCGAGCCCC CGGGACTCGG TCTCCGGCAC ATTCATCCGC 17932
.......... .......... .......... .......... .......... .......... 333
CGACCAGGGA GCCCGTCGAG CCCCCGCGGG TCGTTCTCTG GCACCTTCAT TCGCCACACC 17992
.......... .......... .......... .......... .......... .......... 333
AGCGGGGGTT CCAGTTCCTA TGAATCTGCT TCTGGCGGCG GCGGGGGTTT CGGGTCCTCT 18052
.......... .......... .......... .......... .......... .......... 333
TTCTGGAGTC CAGCGGTGGA GCAGACAGAG GAGCTCCGGC AACCGTCGCC TCTGATGCAG 18112
.......... .......... .......... .......... .......... .......... 333
CAACAACAGC AGCAGCATTC AAGGCGGAAG CCATCAGTGA GCTCGGCGCC AGACAGTGTT 18172
.......... .......... .......... .......... .......... .......... 333
ACCAGAGAGG ATCCTTCCAC CAAGTACGAG CTGCTCCATG AGCTTGGTGC GCCTCTTGCT 18232
.......... .......... .......... .......... .......... .......... 333
CTGGAATTAT TGTTTCATTA GTTCTGTATG TCTACTTGTA GAATGGCTGA AGCTTTGAGC 18292
.......... .......... .......... .......... .......... .......... 333
TGTTTTGCGA AATGCAAAAT TCAATTGGGA ATGCAGGGAA AGGCTCATAT GGTGCAGTGT 18352
.......... .......... .......... .......... .......... .......... 333
ACAAAGCAAG GGATCTCAGA ACGCAGGAGC TTGTGGCTGT CAAGATTATC TCACTAACAG 18412
.......... .......... .......... .......... .......... .......... 333
AAGGGGTTAG TTTCTAATTT TCTATTACAA AGTTCTGTGA ATATTCTGAA AGGCCACCCG 18472
.......... .......... .......... .......... .......... .......... 333
AGACATATTT CATATTTGGC AACCATATTG CTTTTGTTGT GAGCATTTTG TTTGCATGGG 18532
.......... .......... .......... .......... .......... .......... 333
CTCAATTGTG AGAGAATCTC ATAAATGTGG TTGCTGTCTG TTTTCCGAGT CGTTGCATTT 18592
.......... .......... .......... .......... .......... .......... 333
TTCCAAAATA TAAGTATGTA TCTTTGGTTT TCAGGAAGAA GGATATGAAG ACATACGGGG 18652
||||| | || || | |
.......... .......... .......... ....GAAGAT GAATCTGGTG A......... 350
AGAAATTGAG ATGCTGCAGC AGTGTAGCCA TCCAAATGTT GTCCGCTACT TTGGAAGCTA 18712
.......... .......... .......... .......... .......... .......... 350
CCAAGGAGAG GACTACCTAT GGGTACAATC AAATAGCCTG ATAGTATCCA TTTTATTAAC 18772
.......... .......... .......... .......... .......... .......... 350
ATTAAGAAAT AACTATCATT GGGAGATTTC TCTACTTCTT GAGTCATTTA ACATGGGCTT 18832
.......... .......... .......... .......... .......... .......... 350
GATGCAAATG CGATTCTCAA CTTACAGATA GTTATGGAGT ACTGTGGTGG TGGAA 18887
|| | | || ||| || | | || ||
.......... .......... .......... .TT-TCG-GT ACTATGATCG TGAAA 372
********************************************************************************
EST sequence 132 +strand (File: 12047395+)
1 TGTAGCTGCC CAGCTGACAA GAACAATGTC AAAGCGCAAC ACGTTCATTG GTACTCCACA
61 TTGGATGGCA CCAGAGGTCA TTCAAGAAAG TCGTTATGAT GGAAAGGTAG
Predicted gene structure (within gDNA segment 18981 to 21219):
Exon 1 19281 19323 ( 43 n); cDNA 1 43 ( 43 n); score: 0.977
Intron 1 19324 20843 (1520 n); Pd: 0.770 (s: 0.98), Pa: 0.962 (s: 1.00)
Exon 2 20844 20910 ( 67 n); cDNA 44 110 ( 67 n); score: 0.985
MATCH 21326110+ 12047395+ 0.985 110 1.000 C
PGS_21326110+_12047395+ (19281 19323,20844 20910)
Alignment (genomic DNA sequence = upper lines):
TGTAGCTGCC CAGCTGACAA GAACCATGTC AAAGCGCAAC ACGGTATTCT AAACAGTGTT 19340
|||||||||| |||||||||| |||| ||||| |||||||||| |||
TGTAGCTGCC CAGCTGACAA GAACAATGTC AAAGCGCAAC ACG....... .......... 43
TGTTTTGCCA TTCAAATCCA TAGTTCAAGA AACTTCACAT CGATGTAACA AACAAAATGA 19400
.......... .......... .......... .......... .......... .......... 43
AGTGGCAGAT GAAACTTGTC CATGCCAGTT TACCATAAGC GGACCCATTT GTGCTTGTGC 19460
.......... .......... .......... .......... .......... .......... 43
ATAGTTCTTC AATGTGATGG TACTTTTATG GGAACTTGAA GCAAGTCTGT GTTGGAAAAT 19520
.......... .......... .......... .......... .......... .......... 43
GATTGCTGTG AAGTCCTAAC TGTTTCTTTA AGTGTCATAC TGCAAGTGCA TTATGGTCTA 19580
.......... .......... .......... .......... .......... .......... 43
TTAGGTTTAA AATGAAAAAT AAGAAAGTAT ATATTTGTTA TCTAGTATGC CTCGCCTAAT 19640
.......... .......... .......... .......... .......... .......... 43
TCCTTGGCAT TTCTTCCATT CTTTGAAACC CATACTGGTG GAACCTAGTT GAAGTGGTTC 19700
.......... .......... .......... .......... .......... .......... 43
CTGTACAAAT ACTCTCTGCA CTGCTTCTTC TCCCTTTCTT GTCGTGACAG CCTCTAGTCC 19760
.......... .......... .......... .......... .......... .......... 43
CCATATATCC CATTATGAAT CTGCTCACTC CCCCATTTGG CTTCTTCCTA GGCCACCACT 19820
.......... .......... .......... .......... .......... .......... 43
CAACAATTCT TCTGTTCTTG ATGACTGCGA TGCTCCATTC GATCTGGCAA ATTGCTGCCT 19880
.......... .......... .......... .......... .......... .......... 43
TGCTGGAGCT ATTCAAGAAC GTAGAGGGTT ACTGTGACAT TAGCATATCA AACCAACAGG 19940
.......... .......... .......... .......... .......... .......... 43
TCTGTTGGAA ATCATAATCA CAATGAACCT CCAAGTGGGA AATATTATCC AGGGCGTCAT 20000
.......... .......... .......... .......... .......... .......... 43
CTTACCTCCA AGTTATGGAC TCTGCTTGAC ACTAGAGGAA GAGTTAGTGC ACAGGGAGTC 20060
.......... .......... .......... .......... .......... .......... 43
CAAATCAGGT AGGATAGTTG ATAGTTCATA ATTGGCTAGA TCTAGGAGGA GGTATGTGAG 20120
.......... .......... .......... .......... .......... .......... 43
TGAGAGTTTG GAAAATCAGG GTAGAATACA AGTTCAGGTT CCCTAGGACG ATGATATAAT 20180
.......... .......... .......... .......... .......... .......... 43
GTAGTACCAT ACTACAAGAA TTGACTATGG AATTTATTAA TATCTAGCTA GAAACCAATA 20240
.......... .......... .......... .......... .......... .......... 43
TAAAAAAACA ATCTACTCCC CTTTCTACTG CTGCTGATAC TTCTACTCTT TTTTTTTTCT 20300
.......... .......... .......... .......... .......... .......... 43
CTCTTGTACA CCTTCTTGGC TGCTACACTT CTCTAGTTTC CAATCATGAC AATACATAAA 20360
.......... .......... .......... .......... .......... .......... 43
TGCTTGAGGA GCCCATAACA AATAGTTCTA CCCCACCCAC CCACACCCTT TCGTAGTAAA 20420
.......... .......... .......... .......... .......... .......... 43
GTGTGCCGAC AACAGTTGGT GCCCTCTTCT CGATGGTATC CATTGCTTTT CTGCATGCAC 20480
.......... .......... .......... .......... .......... .......... 43
ACACAAACAA ACACTTCTAA ATACACATAC TGACTTGTCG TATTGGCATG CAGTCATGCA 20540
.......... .......... .......... .......... .......... .......... 43
TTGAGACCAA ATCCATCAGG ACTGCATCCG CACAACACAA AATCTCACCA TACATGCATA 20600
.......... .......... .......... .......... .......... .......... 43
CGGTGTCTTG GATGTTTCTG TTGTTGGGGC GCTAATATGT ACTTCTACCA AAATGCAAGG 20660
.......... .......... .......... .......... .......... .......... 43
ACAAACTGTC CCAATTTTAC AGTAAAATAA CTATCATTGT GAAACAGACT GTCAGCATCG 20720
.......... .......... .......... .......... .......... .......... 43
CTCTCTAAGC TCAGTCTGTA CAGCTTTTAC CAAATAAAAA TAATGCAATG GTTTTTGGAA 20780
.......... .......... .......... .......... .......... .......... 43
AGAATAAAGG TTTTAGTGGC ACACTAATTT CCATAATTTG ACCCTTCATG TTTATGCTTT 20840
.......... .......... .......... .......... .......... .......... 43
CAGTTCATTG GTACTCCACA TTGGATGGCA CCAGAGGTCA TTCAAGAAAG TCGTTATGAT 20900
||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
...TTCATTG GTACTCCACA TTGGATGGCA CCAGAGGTCA TTCAAGAAAG TCGTTATGAT 100
GGAAAGGTAT 20910
|||||||||
GGAAAGGTAG 110
********************************************************************************
EST sequence 224 -strand (File: 9299315-)
1 ATATGATTGG ATGTCGACAT CATAAATATA CGATTTAAAT ATTCGGATAC GGATACAGTT
61 TCGGATGTTA AATATTCGGA CTCGGATACG GACAAATCTG AACCCCTCTA AACGAATTTG
121 GTCTCGAATA CGGTCGGAAA ATATCTGTAA CGTTTTCATC CCCGCGTGTG AGCGGGGCAA
181 GAAGCTGTGC AGCGTGCGTC CTAGAAAAGT TGCGTGTCAT CATTTTCACC AACCAGCAAG
241 CGAGGTTCGT CCCCGGAACC GCCGACCTCG ATGCCTACGC AGAAGTGCGG GCCCGCCGCG
301 GACAGCACCA CGGCACGCAT CGGCAGTGAA GAACCTACAG ATCTGCTTGC ACCAGGACGG
361 ATTCTGCTCG ACGCTGAACT AGTAGGTGTG GAGTCCATGG TTGGAGATGA GATTTGAGAA
421 GAATGGGTGA GGATCAACAG AAGAGACAGG GAAGAAGAAG AAGAAGAAGA GTACAAAGTT
481 TTATATAAAA TGTGAGTGTT GTTTCGATAG ATTTAATCAA ATTTAAATTT GTTTGAATTC
541 TTGGAAAATG CAAATTGCAT TCTTTCATAG TAGTATTCGC TAATCATAAA CCACATTGTG
601 TCTTTGTTTC GTCTTAATTA TATTCCTCGT GC
Predicted gene structure (within gDNA segment 21054 to 24186):
Exon 1 21375 21541 ( 167 n); cDNA 1 167 ( 167 n); score: 0.862
Intron 1 21542 21626 ( 85 n); Pd: 0.000 (s: 0.84), Pa: 0.999 (s: 0.49)
Exon 2 21627 21671 ( 45 n); cDNA 168 209 ( 42 n); score: 0.489
Intron 2 21672 22289 ( 618 n); Pd: 0.992 (s: 0.49), Pa: 0.414 (s: 0)
Exon 3 22290 22294 ( 5 n); cDNA 210 214 ( 5 n); score: 0.600
MATCH 21326110+ 9299315- 0.862 217 0.343 C
PGS_21326110+_9299315- (21375 21541,21627 21671,22290 22294)
Alignment (genomic DNA sequence = upper lines):
ATACGATTGG ATGTCGACAT CATAAATATA TGATTTAAGT ACTCGGATAC GGATACGGTA 21434
||| |||||| |||||||||| |||||||||| ||||||| | | |||||||| |||||| ||
ATATGATTGG ATGTCGACAT CATAAATATA CGATTTAAAT ATTCGGATAC GGATACAGTT 60
TCGGATGTAG AACATTCGAA CTCGGATACG AACTGGTCTG AATCCCTCTA AACGAATTCG 21494
|||||||| || ||||| | |||||||||| || |||| || ||||||| |||||||| |
TCGGATGTTA AATATTCGGA CTCGGATACG GACAAATCTG AACCCCTCTA AACGAATTTG 120
GTCTCAAATA CGGTCGGAAA ATATCCGTAC CGTTTTCATC CCTAGTTGCA ATGTTGAGAA 21554
||||| |||| |||||||||| ||||| ||| |||||||||| || |
GTCTCGAATA CGGTCGGAAA ATATCTGTAA CGTTTTCATC CCCGCGT... .......... 167
AATTATTTTG GCAGCTGGAA TTCTTCCTTT AGTTTGTCTT ACCAAAACAT TTGTTCTTGT 21614
.......... .......... .......... .......... .......... .......... 167
TTCCTGCACC AGGTAGATGT TTGGGCATTA GGTGTATCTG CAATTGAGAT GGCAGAGGTA 21674
|| || | || | | | ||| | | | | | | | ||
.......... ..GT-GA-GC GGGGCAAGAA GCTGT-GCAG CGTGCGTCCT AGAAAAG... 209
GACATTGTTC CTTGCTTCTT TCTTTTTTTG ACTGTACACT TTTGTTTTTA ATTTTGTGTC 21734
.......... .......... .......... .......... .......... .......... 209
GTGACAATGC TTTTTAATAT TTATTTTGTA TCTCTGACTG TAGGGCATGC CACCAAGATC 21794
.......... .......... .......... .......... .......... .......... 209
CACTGTACAT CCAATGAGAG TAAGAGATGC TTCTCAATGC CTGTTAGTAT CTGCAGTTAA 21854
.......... .......... .......... .......... .......... .......... 209
TGAGGCTAAT AGGTTATAAC AGAATTAAAA AAATCTGCTC TATCTTTGGT GCACTGTACT 21914
.......... .......... .......... .......... .......... .......... 209
TTTTATCTCT TTACTGTCAA GGGCGTCGAG GGACAGGGTA GGAGGATCCC GGCTACGTAG 21974
.......... .......... .......... .......... .......... .......... 209
TTCATAGACC AATCTGTGGT GTGGGGCGGA GGTTTTACCC CTCAGTGCCC GATTGTTTCA 22034
.......... .......... .......... .......... .......... .......... 209
GCAAAGGTAG ATTAGGGAAT TGGGATAATT GTTCTTTCTT GATTATCATC ATACGAGTAC 22094
.......... .......... .......... .......... .......... .......... 209
AAGAATATAT AGGCCATTCG GCCATAACAG CTTGGAGCCA ATTGCTCCTA AATCTAAGGC 22154
.......... .......... .......... .......... .......... .......... 209
CATTATCGGC TCTCCTGCCT TCTAGGCTCT CGCCTGTTCA GTGTGCTCTG CATGCGTGGT 22214
.......... .......... .......... .......... .......... .......... 209
GACCGCGCCT ACGGTTCTGC TGGTGCGCCA TCTGCGGCTC TGCGAGCATC CTGGGCGTGC 22274
.......... .......... .......... .......... .......... .......... 209
CGTTTCCTTG TGTAGGCGCG 22294
|||
.......... .....TTGCG 214
********************************************************************************
EST sequence 330 -strand (File: 11409274-)
1 AGATGTTGAA TATTCGGACT CGAATACGGA CAGATCTAAA TCCCTCTAAA CGAATTCCCT
61 CTAAACGAAT TCGGTCTCGA ATATGGTCGG AAAATATCCG TACCGTTTTC ATCCCTACTT
121 TTGTGTTATA GAGAGAAAGA GATAGCCTCA ACTTCCAGCA TAGCACAAGC CCATCTTACA
181 TCCAAAGCAA ACCACCCAGC CACCCAGGTC CTACTCAGCA AAACCACATC TGATGCTTTC
241 GTCGATGCTA GGCATTTTCC CCTAGTGGCC TCCGTCCGCT AGACCCATTC CATCGTCCGC
301 GCCTTTACCT CCACAGGACC TTGCAACCGA CTCAAAAAGC TTCTCTATCT CAGGAGCACA
361 GTGTGTAAAG GATCGAGTCC AGAAGCTGTA GCGTGGGTTC TTTATAAGCT CAATGAAAGT
421 AATGAGTAAT CCCCAAGGAT GCGGCCGATT GACAATTAAC CTTTCCAGAA GAACCCTTGT
481 TATCTGCTCT TGGACAATTT CCTGTGTTGC CTCAGCAAAC AAGTACAGAA TGATGAAGGA
541 AAAGTAGTGG GTATGGCTAT TTGGATAGCG AAGCTGGTTA GCAATCGCAT TGAGAATAAG
601 GTAGCGACCT TCTGTGTCCA TAGTCATTAC AAGGTTTCTG AACATCTCAG TAGCTGTTTC
661 AATTTGGGAA TAT
Predicted gene structure (within gDNA segment 20873 to 24618):
Exon 1 21477 21538 ( 62 n); cDNA 56 117 ( 62 n); score: 0.968
Intron 1 21539 21645 ( 107 n); Pd: 0.000 (s: 0.96), Pa: 0.848 (s: 0)
Exon 2 21646 21671 ( 26 n); cDNA 118 141 ( 24 n); score: 0.615
Intron 2 21672 21761 ( 90 n); Pd: 0.992 (s: 0), Pa: 0.000 (s: 0.60)
Exon 3 21762 21813 ( 52 n); cDNA 142 190 ( 49 n); score: 0.596
MATCH 21326110+ 11409274- 0.798 140 0.208 C
PGS_21326110+_11409274- (21477 21538,21646 21671,21762 21813)
Alignment (genomic DNA sequence = upper lines):
TCCCTCTAAA CGAATTCGGT CTCAAATACG GTCGGAAAAT ATCCGTACCG TTTTCATCCC 21536
|||||||||| |||||||||| ||| |||| | |||||||||| |||||||||| ||||||||||
TCCCTCTAAA CGAATTCGGT CTCGAATATG GTCGGAAAAT ATCCGTACCG TTTTCATCCC 115
TAGTTGCAAT GTTGAGAAAA TTATTTTGGC AGCTGGAATT CTTCCTTTAG TTTGTCTTAC 21596
||
TA........ .......... .......... .......... .......... .......... 117
CAAAACATTT GTTCTTGTTT CCTGCACCAG GTAGATGTTT GGGCATTAGG TGTATCTGCA 21656
| | | ||
.......... .......... .......... .......... .........C T-TTTGTGTT 127
ATTGAGATGG CAGAGGTAGA CATTGTTCCT TGCTTCTTTC TTTTTTTGAC TGTACACTTT 21716
|| |||| | ||||
ATAGAGA-GA AAGAG..... .......... .......... .......... .......... 141
TGTTTTTAAT TTTGTGTCGT GACAATGCTT TTTAATATTT ATTTTGTATC TCTGACTGTA 21776
|| | || | |
.......... .......... .......... .......... .....ATAGC -CTCAACTTC 155
GGGCATGCCA CCAAGATCCA CTGTACATCC AATGAGA 21813
|||| || |||| ||| ||||||| || | |
CAGCATAGCA -CAAG-CCCA TCTTACATCC AAAGCAA 190
********************************************************************************
EST sequence 99 +strand (File: 13239349+)
1 GCACGAGGAG TTTGAGTTTT GGAGAGTGGC GCCAATGGAA GTTTGAGTTT TGAAATTTGG
61 ATGCTAATTT TTTGTTGAAA GTCATCTGTA GGGCTTGTAG AAATAAGCGC GGGAAAGAAT
121 AGTGGGAGCG CGCGAGGAGA CGAGCGGCCG TACCAGACGC GCGAGGAGAC CAGCGTAGGG
181 CTTGTAGAAA TAAGCGCGGG AAAGAATAGT GGGAGCGCGC GAGGAGACGA GCGGCCGTAC
241 CAGACGCGCG AGGAGACCAG CGACCACGGA GATTTAGCGG CGTTGGTTAA GTTTACCGCC
301 TCATTACTCT TGGAACAGCG ATTTAATGAA AAAGGCCATG GGCCTACGTT GCTCCTTGGT
361 CTCTGGGCTG AGGGTTTAGA TGAGGGAGAC TGATGGACGG AGAGAGTAAT ATCTATATGC
421 CCTAAGAAAA AACACGCCCT ATGAGTAGAG ATAAAAACAG ATGGAATACG GACGGATATT
481 ATCGATATCA TATTTGTTTT TATATTTCTG GTTGAATTCA AATTCGAATA CAGATAATGT
541 TAACCACGTT GGATAAGATA CGATTGAATA TCAACATCAT AAATATACG
Predicted gene structure (within gDNA segment 18658 to 21719):
Exon 1 21266 21406 ( 141 n); cDNA 449 589 ( 141 n); score: 0.851
MATCH 21326110+ 13239349+ 0.851 141 0.239 C
PGS_21326110+_13239349+ (21266 21406)
Alignment (genomic DNA sequence = upper lines):
GGATGAAAAC GGATCGGATA CGGACGGATA TCATCGATAT CATATTTGTT TTCGTATTTC 21325
||| ||||| ||| | ||| |||||||||| | |||||||| |||||||||| || ||||||
AGATAAAAAC AGATGGAATA CGGACGGATA TTATCGATAT CATATTTGTT TTTATATTTC 508
TGGTCGAATT CGGATTCGAA TACGGATAAT GTCAACTATA TCGGATAAGA TACGATTGGA 21385
|||| ||||| | ||||||| ||| |||||| || ||| | | |||||||| |||||||| |
TGGTTGAATT CAAATTCGAA TACAGATAAT GTTAACCACG TTGGATAAGA TACGATTGAA 568
TGTCGACATC ATAAATATAT G 21406
| || ||||| ||||||||| |
TATCAACATC ATAAATATAC G 589
********************************************************************************
EST sequence 235 -strand (File: 7217281-)
1 ACGAACGGAT ATCATTGATA TAATATTTGT TTTTATATTT CTAGTCGGAT TCGGATTCGA
61 ATACGGATAA TGTCAACCAT ATCGGATAAG ATATGATTTG ATGTCGACAT CATAAATATA
121 CGATTTAAGT ATTCGGATAC GGTATGTTGA ATATTCGGAC TCGGATACGG ACAGATCTGA
181 ACCCCTCTAA ACGAATTCGG TCTCAAATAC GGTCGGAAAA TATCCGTACC GTTTTCATCC
241 TTACCCAGCG CTTTCAAATT CAATGACGAG CCGTCGCCTC TCGACGGCTG GGAACTGGGA
301 AGTAGTCCAG GACGGAGTAC TCGTGCTCAG GAGTCAGGAC GCACTGCGAG CCACCCGGCC
361 ATCGCGAGAG ACGCGCGCAG GACAACTTCG CGGTCCTGGT GCACGCCAGG GCCCCCGTTG
421 GGTTGGGCCC GCCGAGGCGT CGGAGCGCGC ACCACTTGAT CTCGTCACGG TACTCGACGT
481 CAGCGGAAGC ATGTCTGGCC ACAAACTGGT CCTCCTGAAG CAGGCCATGG ACTGATGGAC
541 TTCGTCATCG ACCACTTTGG CCCCAGCGAC CGGCTCAGCA TCGTCTCCTT CACATTGGCA
601 ACCAAAACCA AAATAGATCT CCAACATAAT ACCTATAATC TCCAACAAAG AGCATCTGAC
661 ACCCATTTTA AGTATCAAGA GAGATATAGC CTAAAT
Predicted gene structure (within gDNA segment 20788 to 24115):
Exon 1 21285 21538 ( 254 n); cDNA 1 243 ( 243 n); score: 0.886
MATCH 21326110+ 7217281- 0.886 254 0.365 C
PGS_21326110+_7217281- (21285 21538)
Alignment (genomic DNA sequence = upper lines):
ACGGACGGAT ATCATCGATA TCATATTTGT TTTCGTATTT CTGGTCGAAT TCGGATTCGA 21344
||| |||||| ||||| |||| | |||||||| ||| ||||| || |||| || ||||||||||
ACGAACGGAT ATCATTGATA TAATATTTGT TTTTATATTT CTAGTCGGAT TCGGATTCGA 60
ATACGGATAA TGTCAACTAT ATCGGATAAG ATACGATTGG ATGTCGACAT CATAAATATA 21404
|||||||||| ||||||| || |||||||||| ||| |||| | |||||||||| ||||||||||
ATACGGATAA TGTCAACCAT ATCGGATAAG ATATGATTTG ATGTCGACAT CATAAATATA 120
TGATTTAAGT ACTCGGATAC GGATACGGTA TCGGATGTAG AACATTCGAA CTCGGATACG 21464
||||||||| | | | | |||||||||| | | | | | || ||||| | ||||||||||
CGATTTAAGT A-T----T-C GGATACGGTA T--G-T-T-G AATATTCGGA CTCGGATACG 169
AACTGGTCTG AATCCCTCTA AACGAATTCG GTCTCAAATA CGGTCGGAAA ATATCCGTAC 21524
|| | |||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACAGATCTG AACCCCTCTA AACGAATTCG GTCTCAAATA CGGTCGGAAA ATATCCGTAC 229
CGTTTTCATC CCTA 21538
|||||||||| | ||
CGTTTTCATC CTTA 243
********************************************************************************
EST sequence 133 +strand (File: 8665552+)
1 GAGAAATGGT CTCTCCTCTT CCATGATTTT ATTGCAAAGT GTCTTACTAA AGATCCCAGA
61 CTTCGGCCTG CTGCAATTGA GATGCTGAAG CACAAATTTA TTGAGAAGTG CAATAGTGGA
121 GCTTCGAAAA TGTTGGCAAA GATCAAGGTA GCGAAGAAGA TTAGAGCCAC ACTAGCTGTG
181 CAAAATGAGC TGTCTGACCC TGACAATACA ACGCAAGATG TGCCTTTTCG AATAAATGAG
241 GATTATGGGG AAACTGTCCC TACAAGTTCT CAGCAACACA TGAAACATGG CACATATAAT
Predicted gene structure (within gDNA segment 23779 to 24997):
Exon 1 24147 24228 ( 82 n); cDNA 9 90 ( 82 n); score: 0.927
Intron 1 24229 24336 ( 108 n); Pd: 0.996 (s: 0.90), Pa: 0.906 (s: 0.96)
Exon 2 24337 24453 ( 117 n); cDNA 91 207 ( 117 n); score: 0.957
Intron 2 24454 24535 ( 82 n); Pd: 0.963 (s: 0.96), Pa: 0.997 (s: 0.92)
Exon 3 24536 24628 ( 93 n); cDNA 208 300 ( 93 n); score: 0.914
MATCH 21326110+ 8665552+ 0.935 292 0.973 C
PGS_21326110+_8665552+ (24147 24228,24337 24453,24536 24628)
Alignment (genomic DNA sequence = upper lines):
GTCTCTACTC TTCCATGATT TTATTGCAAA GTGTCTAACA AAAGATCCAA GACTTCGGCC 24206
|||||| ||| |||||||||| |||||||||| |||||| || |||||||| | ||||||||||
GTCTCTCCTC TTCCATGATT TTATTGCAAA GTGTCTTACT AAAGATCCCA GACTTCGGCC 68
TGCTGCAAGT GAGATGGTGA AGGTACTTAT TTTTTTTTTC TCAAAGATGA TGTTTATGGT 24266
|||||||| | |||||| ||| ||
TGCTGCAATT GAGATGCTGA AG........ .......... .......... .......... 90
GCATTTCATG ATCTCTTATT TACATATTTA TTTGTCATTG TTTCTGTTTT CTTCCAAATT 24326
.......... .......... .......... .......... .......... .......... 90
CGCCTTGCAG CACAAATTTA TTGAGAAGTG CAATAGTGGA GCTTCAAAAA TGTTGGCGAA 24386
|||||||||| |||||||||| |||||||||| ||||| |||| ||||||| ||
.......... CACAAATTTA TTGAGAAGTG CAATAGTGGA GCTTCGAAAA TGTTGGCAAA 140
GATCAAGGAA GCGAAGAAGA TTAGAGCCAC ACTTGCTGTG CAAAATGAAC TGTCTGACCC 24446
|||||||| | |||||||||| |||||||||| ||| |||||| |||||||| | ||||||||||
GATCAAGGTA GCGAAGAAGA TTAGAGCCAC ACTAGCTGTG CAAAATGAGC TGTCTGACCC 200
TGACAATGTA TGCCACATAG TTGTTACTGT TATGTGTGGG TTGGTTATGC TATTTCACTT 24506
|||||||
TGACAAT... .......... .......... .......... .......... .......... 207
GACGTCAATA TTTACTTTGG TATCTGCAGA CAATGCAAGA TGTGCCTGTT CGAATAAATG 24566
| ||| |||||| ||||||| || ||||||||||
.......... .......... .........A CAACGCAAGA TGTGCCTTTT CGAATAAATG 238
AAGACTATGG GGAAACTGTT CCTACAAATT CTCAGCAACA CATGAATCAT GGGACATATA 24626
| || ||||| ||||||||| ||||||| || |||||||||| |||||| ||| || |||||||
AGGATTATGG GGAAACTGTC CCTACAAGTT CTCAGCAACA CATGAAACAT GGCACATATA 298
AT 24628
||
AT 300
********************************************************************************
EST sequence 68 +strand (File: SBtuc02-10-21.5562+)
1 GCACGAGGCA GATGTCAACC ACTCTGATCA AGCACTTGAG ATTGCATCTG ATCGTGTCTA
61 CTACATTTAT CAGACTCTAT ATGACTGTGA GGAAGTGCTA GCTACATATC GTGAAAAGGG
121 TATTGCTGTC CCAGTGCCAT CTGAGGAGCA AAATCTGATT GATAAGCACC ATTCAGAATT
181 CTTGAAATAT ATGTCGAATG ATCTTAAAAC CACAGATGTT CTGGATCGTT GCTTCGTGGA
241 GCTGCTGAAG ACCATAAACA GCAGTCTGAA TGATTTGAAG AAACTGCAGC AAAAAATAGA
301 ACAGCAAAAG AAGAAACAGC AACAGCAGAA GAAGCAGCAA CAGAAGCAAC AGCAGTTGCA
361 AAAACAGCCA GAAGATTATA TTCAAGCACT GATTGCCTTG GAAACAGAAC TTAAAAATAA
421 ACTGTCTATA CTTGGTCTGA TGCCATCATC ATCTTTGGCA GAGGTACTGA AGCAACTGAA
481 GGACAAAGCA TTAAAGCGAG CAGGGCTGAC TGAAGAAAAT TTGCAAGAGC AGATTGAGCA
541 GAGAAATGTC GCAAGGAAGA ATAAGCAGTT TGAGGTATCT GATGGAATCA GGAAAAACCT
601 TGCTACCAAG GGCATCGCCC TAATGGACGA ACCTTCTGGT ACAGTGTGGA GACCATGCGA
661 ACCAGAGCGG TCTGAATAAT CATGATTATA TGCTCATTAA CTCAACGAGT GATGGTGTAA
721 AATGAGATTT TTGCCTCAGG GCAGCTATCA CATTTTGAGG ACTAACAAAA ATCGCCATCT
781 CTGGATGTGG TATTCTGCAG TGTAGGGGGT CCAGGTTGAC TCACCAGTTG AAATTTGCAT
841 TTCTGGTTGT GTAAGAAGCG AAGGACCCCA TATATATACT TGACTCTTTA GGAGGTTGTT
901 GAGCACCGGT GCTGGACTTT GAGACGAACA AGTCAATGCT TTATTCAAGT TCTACAAGGT
961 GTGCCAAATC CTACCCGCCT GCGGAGGAGG AACCGAGGGG GCGTGGGAGG AGTACAAAGT
1021 GGATGCATGG GGAAAACTAC AAAGCGGATG CAAGGTCGTG CAGTGCGGAT GCAAATGCAC
1081 CCTTGCATAG CTGGATACGC TAGATTTAAG GGGAGGAAAA AGTCTACATA ACTCCCCAAA
1141 CTATATAGGG TGGACTACTA ACCCCCCGAA CTATTAAACC GGTTATTCTA CCCTATGAAC
1201 TTTCAAAACC GGTCAAATAA CCCCC
Predicted gene structure (within gDNA segment 19125 to 25438):
Exon 1 21627 21671 ( 45 n); cDNA 1012 1054 ( 43 n); score: 0.533
Intron 1 21672 24009 (2338 n); Pd: 0.992 (s: 0.53), Pa: 0.000 (s: 0)
Exon 2 24010 24021 ( 12 n); cDNA 1055 1065 ( 11 n); score: 0.750
Intron 2 24022 24535 ( 514 n); Pd: 0.701 (s: 0), Pa: 0.997 (s: 0)
Exon 3 24536 24572 ( 37 n); cDNA 1066 1099 ( 34 n); score: 0.595
Intron 3 24573 24999 ( 427 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.78)
Exon 4 25000 25125 ( 126 n); cDNA 1100 1225 ( 126 n); score: 0.833
MATCH 21326110+ SBtuc02-10-21.5562+ 0.833 220 0.180 C
PGS_21326110+_SBtuc02-10-21.5562+ (21627 21671,24010 24021,24536 24572,25000 25125)
Alignment (genomic DNA sequence = upper lines):
GTAGATGTTT G-GGCATTAG GTGTATCTGC AATTGAGATG GCAGAGGTAG ACATTGTTCC 21685
||| | | | ||| | | | | || | || ||| ||| ||
GTACAAAGTG GATGCA-TGG GGAAAACTAC AAAGCGGAT- GCA-AG.... .......... 1054
TTGCTTCTTT CTTTTTTTGA CTGTACACTT TTGTTTTTAA TTTTGTGTCG TGACAATGCT 21745
.......... .......... .......... .......... .......... .......... 1054
TTTTAATATT TATTTTGTAT CTCTGACTGT AGGGCATGCC ACCAAGATCC ACTGTACATC 21805
.......... .......... .......... .......... .......... .......... 1054
CAATGAGAGT AAGAGATGCT TCTCAATGCC TGTTAGTATC TGCAGTTAAT GAGGCTAATA 21865
.......... .......... .......... .......... .......... .......... 1054
GGTTATAACA GAATTAAAAA AATCTGCTCT ATCTTTGGTG CACTGTACTT TTTATCTCTT 21925
.......... .......... .......... .......... .......... .......... 1054
TACTGTCAAG GGCGTCGAGG GACAGGGTAG GAGGATCCCG GCTACGTAGT TCATAGACCA 21985
.......... .......... .......... .......... .......... .......... 1054
ATCTGTGGTG TGGGGCGGAG GTTTTACCCC TCAGTGCCCG ATTGTTTCAG CAAAGGTAGA 22045
.......... .......... .......... .......... .......... .......... 1054
TTAGGGAATT GGGATAATTG TTCTTTCTTG ATTATCATCA TACGAGTACA AGAATATATA 22105
.......... .......... .......... .......... .......... .......... 1054
GGCCATTCGG CCATAACAGC TTGGAGCCAA TTGCTCCTAA ATCTAAGGCC ATTATCGGCT 22165
.......... .......... .......... .......... .......... .......... 1054
CTCCTGCCTT CTAGGCTCTC GCCTGTTCAG TGTGCTCTGC ATGCGTGGTG ACCGCGCCTA 22225
.......... .......... .......... .......... .......... .......... 1054
CGGTTCTGCT GGTGCGCCAT CTGCGGCTCT GCGAGCATCC TGGGCGTGCC GTTTCCTTGT 22285
.......... .......... .......... .......... .......... .......... 1054
GTAGGCGCGG TCCCACATGA CATTTACTTT CTTTCTGATG CATTTGCTTC TTTACTTTGC 22345
.......... .......... .......... .......... .......... .......... 1054
CTTGGTAAAT ATTTGGTATA CATATCAATA TATTGTTTCA TCTTCGTTTA GCATGAATGC 22405
.......... .......... .......... .......... .......... .......... 1054
TTGATAGACC GACTAACGAT CTCTCTTCCC CCTTCCCTTA TCTCAGGTTA TCTTCATGAT 22465
.......... .......... .......... .......... .......... .......... 1054
ATCCAGTGAA CCAGCACCAA TGCTGGAGGA TAAGGAGAAA TGGTAAGTGG TTTCTAGTAA 22525
.......... .......... .......... .......... .......... .......... 1054
TCATGTAATT GTTTTGCCTA TTTTGAATAG TGGACGGTCT CATCAGACCT AATATTTGCA 22585
.......... .......... .......... .......... .......... .......... 1054
ATATCAGATT TTTAAGTGCC TAGACATAGG GATCTGGCTG AGGTTTCTTT TGACCTGCAA 22645
.......... .......... .......... .......... .......... .......... 1054
CAAAATCAAT ATAAATACTA TAAACAACTA TTCAAACTAG AGGCACTCAT CCAAACAAAA 22705
.......... .......... .......... .......... .......... .......... 1054
CCATTACTGG GATTGAAAAC TGAGGATTTA ATCAGTTAGT TGTCAGTACT ATTTTCCCAG 22765
.......... .......... .......... .......... .......... .......... 1054
TATACTCCTT TCGATTTGTG TGGATTTGGG GCATATTATA GCTTGAAGAT ATAGTAAATA 22825
.......... .......... .......... .......... .......... .......... 1054
CTAAATAGTA TAGAAAGTGA AAAAACTAAT GAGCAGAAAT AAATGCTGCC TTTCTATTAA 22885
.......... .......... .......... .......... .......... .......... 1054
TTGAGTTTTT GTGCTATCTC CGTCCTCTTC TGATTGGCTT CTACAATCGA CCGAACCTTT 22945
.......... .......... .......... .......... .......... .......... 1054
TACCTATGAT CAAAGCATTT ATGTTGCCTG CTTAAATTTA CCTTGTTGGT CTGAATTGTA 23005
.......... .......... .......... .......... .......... .......... 1054
TGAGAGAGTA GCGGTACAGC TTGATGGAAG TTCCAGCTAG TTTTTCCCCC CTCCTTGGGC 23065
.......... .......... .......... .......... .......... .......... 1054
TATGCAGGAG AGCTGCATGT TACTTCATTA ATTAAGAGAG AAAAAAGAGT ACAAGAGCGA 23125
.......... .......... .......... .......... .......... .......... 1054
GGCAAAAACA GCCCCACCTA AACCCAGTTA TATATAAAAC CCATACCACT GACTATAGAA 23185
.......... .......... .......... .......... .......... .......... 1054
CACGACGAAG GGAGATCAAA CCGCCAACCA GAAACTATAA GGTTCTGTGG CAATCAACCT 23245
.......... .......... .......... .......... .......... .......... 1054
TAGACCATGT CCTGGAGGTT AGAAGCTCCT GCCATGCACC AAGAGCTACA GTCATCAGCA 23305
.......... .......... .......... .......... .......... .......... 1054
ACCTTTTGTA GAAGGCTCTG AATATTAGGA GAAAGTCCCT AAACACACAG ACATTCCTAA 23365
.......... .......... .......... .......... .......... .......... 1054
ATTTCCATAC TTTCCAGGCC ACCAAAATAA TAAGGGAATT CAGCTCCTTG CGTATCTCCT 23425
.......... .......... .......... .......... .......... .......... 1054
TGGGTGTATT TCTAATGGTG TTTCCCCATC ATCCGAAGAA ATGAGTTGCA TCGATCAGAG 23485
.......... .......... .......... .......... .......... .......... 1054
GTGTCAAAGC CGCTATGGAA AGTTTGTGAA AAAACGAAGT GTAAACACAG GAGACAAGGA 23545
.......... .......... .......... .......... .......... .......... 1054
TGTGCTGGAT TGTCTCAGCC TGATCACAAA TAGGGCAAGC AGGATGGTGG GGCGGGCAGC 23605
.......... .......... .......... .......... .......... .......... 1054
CCACGCTTGG CGAGGCGATC AGCCATCCAA CACCAATTAT TGATGGCTAA CCAAAGGAAG 23665
.......... .......... .......... .......... .......... .......... 1054
AATTTGCATT TGAGAGGGGC CCAGCTTTTT CAAATCCTTT TCCAGGGACC AAATGTGACA 23725
.......... .......... .......... .......... .......... .......... 1054
GTCATACAGT TCTCTTTATC ATTGCTCAGT GTTTGGTTTA AGAAGCTGCC AAATTTTGTC 23785
.......... .......... .......... .......... .......... .......... 1054
CTTCGCTTTA AGATTAAATA GGCTTTGAAA ACATCAGTCT CCTCGACATA TATGAAACAC 23845
.......... .......... .......... .......... .......... .......... 1054
CATATTCAGG ACCCCTAACT TATCTAGAGC ATAAAGATCT TTTCTGAAAG GGGGAATTGC 23905
.......... .......... .......... .......... .......... .......... 1054
ACAACTATTG GCTACTAAAT TTGTTTTTAG CATTTTGCTT AGACATTATC ACACTAACAC 23965
.......... .......... .......... .......... .......... .......... 1054
TAGTCGGGCC TTTCTTCTTT CTCCTTATTC CGACACATGT CTTTGTCATG ACACTGGTGT 24025
||| || || ||
.......... .......... .......... .......... ....GTCGTG -CAGTG.... 1065
GTGTGTGTTG GAACTCTCTT CTTTTAATGC AATGATACAA CTCTCCTGCA TGTCCCAAAA 24085
.......... .......... .......... .......... .......... .......... 1065
AAAAAGGCAA TAGAAGTTTT AACCATCAGT TGGCCTAAGT TCTTGTTATC CTGACCTTCA 24145
.......... .......... .......... .......... .......... .......... 1065
GGTCTCTACT CTTCCATGAT TTTATTGCAA AGTGTCTAAC AAAAGATCCA AGACTTCGGC 24205
.......... .......... .......... .......... .......... .......... 1065
CTGCTGCAAG TGAGATGGTG AAGGTACTTA TTTTTTTTTT CTCAAAGATG ATGTTTATGG 24265
.......... .......... .......... .......... .......... .......... 1065
TGCATTTCAT GATCTCTTAT TTACATATTT ATTTGTCATT GTTTCTGTTT TCTTCCAAAT 24325
.......... .......... .......... .......... .......... .......... 1065
TCGCCTTGCA GCACAAATTT ATTGAGAAGT GCAATAGTGG AGCTTCAAAA ATGTTGGCGA 24385
.......... .......... .......... .......... .......... .......... 1065
AGATCAAGGA AGCGAAGAAG ATTAGAGCCA CACTTGCTGT GCAAAATGAA CTGTCTGACC 24445
.......... .......... .......... .......... .......... .......... 1065
CTGACAATGT ATGCCACATA GTTGTTACTG TTATGTGTGG GTTGGTTATG CTATTTCACT 24505
.......... .......... .......... .......... .......... .......... 1065
TGACGTCAAT ATTTACTTTG GTATCTGCAG ACAATGCAAG ATGTGCCTGT TCGAATAAAT 24565
|||||| ||| || | | | ||| |
.......... .......... .......... CGGATGCAA- ATGCACC-CT T-GCATAGCT 1092
GAAGACTATG GGGAAACTGT TCCTACAAAT TCTCAGCAAC ACATGAATCA TGGGACATAT 24625
| | ||
GGATACG... .......... .......... .......... .......... .......... 1099
AATGATTGTC AGGCAGGTAA ATTTCCTTTT TGTGAGTTCT TTATTTAAAT AATACACGAG 24685
.......... .......... .......... .......... .......... .......... 1099
TCTTAGCATT CCTTTTGAAT GCCACCAATA CATGTAAGAT TAAAACTGCC TTTTCTTCTG 24745
.......... .......... .......... .......... .......... .......... 1099
AGTCTTTTGT CTAGCAACTG TGATGTCAAC TCAGTATTAC ATATTTCTAT GGCTTGCTCA 24805
.......... .......... .......... .......... .......... .......... 1099
TAACAGTTTG TATGGATTTT ATTCAATAGC TACTTAGGAG TTTTTATGGA TATCTTGGTG 24865
.......... .......... .......... .......... .......... .......... 1099
GGCAGGTTAT CCTGTTGTTC CTTGAATGTG ACGCTTCTAA ATATAGTGCT GTTTCATACT 24925
.......... .......... .......... .......... .......... .......... 1099
TACTCTGAAT CTCTGATCCC TTATATAAGT CCATTAGGAC ATCAATACAG TCTCCAATAT 24985
.......... .......... .......... .......... .......... .......... 1099
GGCACTTTGA CTAACAATAT TTATAGAAAG GAAGAAGTCT ACATAAC-CC CCAAATTATC 25044
| | || ||| | || ||| |||||| ||||||| || ||||| |||
.......... ....CTAGAT TTAAGGGGAG GAAAAAGTCT ACATAACTCC CCAAACTATA 1145
TAGGGTGGAA TACTTCATCC CCCAAACTAT AAAACCGGAT ATTCTACCCC CTGAACTTTC 25104
||||||||| ||| | | || ||| |||||| ||||||| | ||||||||| |||||||||
TAGGGTGGAC TAC-TAACCC CCCGAACTAT TAAACCGGTT ATTCTACCCT ATGAACTTTC 1204
AAAACCGGTC AAATAACCCT C 25125
|||||||||| ||||||||| |
AAAACCGGTC AAATAACCCC C 1225
********************************************************************************
EST sequence 47 +strand (File: SBtuc02-10-21.2872+)
1 ATTTTTCTTC CAAACACGTC TTCATGGACG GTGGCCGCTT GTCAGTGGAA CAAGATGACA
61 GCCTTTGTTC TTAATCTTGA GCTAGAAACT CATCAGCTTT ATCGGCGGAA AAAGTCTACA
121 TCACCCCCTG AACTATGGGG TGGTGTCTAC TTTACCCCCG GAACTATAAA ACAGTCTAAT
181 TTACCCCCTG AACTCTCCAA AACCGTTCAA ATCACCCCTG GGCGGTTTTT TATGGCGGTT
241 TTGCTACAGT ACCGTGGTTT TGACTTTTTC TTTTTCACTA TTTGTTTTGC ATATAATCTT
301 TGAAAAATCA TAATAAATCA CAGATTAATA TTT
Predicted gene structure (within gDNA segment 24003 to 25576):
Exon 1 25016 25142 ( 127 n); cDNA 108 234 ( 127 n); score: 0.724
MATCH 21326110+ SBtuc02-10-21.2872+ 0.724 127 0.381 C
PGS_21326110+_SBtuc02-10-21.2872+ (25016 25142)
Alignment (genomic DNA sequence = upper lines):
GAAGAAGTCT ACATAACCCC C-AAATTATC TAGGGTGGAA TACTTCATCC CCCAAACTAT 25074
||| |||||| |||| ||||| | || ||| | | | ||||| | || || ||||||
GAAAAAGTCT ACATCACCCC CTGAACTATG GGGTGGTGTC TACTTTACCC CCGGAACTAT 167
AAAACCGGAT ATTCTACCCC CTGAACT-TT CAAAACCGGT CAAATAACCC TCTAGAGTGG 25133
||||| | | | | |||||| ||||||| | |||||||| | ||||| |||| || | | ||
AAAACAGTCT AATTTACCCC CTGAACTCTC CAAAACCGTT CAAATCACCC -CT-GGGCGG 225
TTTTAGAGG 25142
|||| | |
TTTTTTATG 234
********************************************************************************
EST sequence 326 -strand (File: 12504691-)
1 ATACATGGCT TCAGGTAACT TCTTGTGATC CTGTGACGTC GTGTACAAAC ATTGCTGGAA
61 GGAATAATGA ACCGGCATCC CTTTTAGATT TGTGTATTTT CTTTCTGAGA AATTTGGGTG
121 TCTTGGCCAA ACTTGGATAC CTGTTCGCTT GTTTATGGCT TGTTCGCTTG TCTATGTCTG
181 AAAATACTTT CGTTGATTTA TTCTGAGAAA AAGTCTATAT AATCCATCAA ACTATCTAGG
241 GTGGATACTT CGTCCTCTAA ACTATAAAAC CAAACTATAA AACTAGATAT TCTATCCTCT
301 GAATTTTTAA AACTGGTCAA ATAACTCTCT TCCAGAGTGG TTTTAGATAG TTTTGTCTCT
361 TTTTTTTTTT AAATTTATTT TCGCTGAATT TTTAAAAAAT CATAATAAAT TATAAAAAAA
421 ATCATAAAAT GAAAAATTCA ATTTTCTTGG ACTCTTGATC CTCGTGC
Predicted gene structure (within gDNA segment 23576 to 25708):
Exon 1 25066 25250 ( 185 n); cDNA 270 457 ( 188 n); score: 0.811
MATCH 21326110+ 12504691- 0.811 185 0.396 C
PGS_21326110+_12504691- (25066 25250)
Alignment (genomic DNA sequence = upper lines):
CCAAACTATA AAACCGGATA TTCTACCCCC TGAACTTTCA AAACCGGTCA AATAAC-C-C 25123
|||||||||| |||| |||| ||||| || | |||| ||| | |||| ||||| |||||| | |
CCAAACTATA AAACTAGATA TTCTATCCTC TGAATTTTTA AAACTGGTCA AATAACTCTC 329
-TCTAGAGTG GTTTTAGAGG GTGGTTTTAT ATTTTTCTTT TTTTATTTAT TTTCGCTGAA 25182
|| |||||| |||||||| || || | | ||||| ||| || |||||| ||||||||||
TTCCAGAGTG GTTTTAGATA GT-TTTGTCT CTTTTTTTTT TTAAATTTAT TTTCGCTGAA 388
TCTTTGAAAA ATCATAATAA ATCAT-AGAA AAATCATAAA ATAAAAAAAT TAATTTTATT 25241
| ||| |||| |||||||||| || || | || |||||||||| || ||||| | |||||| ||
TTTTTAAAAA ATCATAATAA ATTATAAAAA AAATCATAAA ATGAAAAATT CAATTTTCTT 448
GGACTCCTG 25250
|||||| ||
GGACTCTTG 457
********************************************************************************
EST sequence 236 -strand (File: SBtuc02-10-21.2872-)
1 AAATATTAAT CTGTGATTTA TTATGATTTT TCAAAGATTA TATGCAAAAC AAATAGTGAA
61 AAAGAAAAAG TCAAAACCAC GGTACTGTAG CAAAACCGCC ATAAAAAACC GCCCAGGGGT
121 GATTTGAACG GTTTTGGAGA GTTCAGGGGG TAAATTAGAC TGTTTTATAG TTCCGGGGGT
181 AAAGTAGACA CCACCCCATA GTTCAGGGGG TGATGTAGAC TTTTTCCGCC GATAAAGCTG
241 ATGAGTTTCT AGCTCAAGAT TAAGAACAAA GGCTGTCATC TTGTTCCACT GACAAGCGGC
301 CACCGTCCAT GAAGACGTGT TTGGAAGAAA AAT
Predicted gene structure (within gDNA segment 25343 to 26748):
Exon 1 25793 25918 ( 126 n); cDNA 103 227 ( 125 n); score: 0.762
MATCH 21326110+ SBtuc02-10-21.2872- 0.762 126 0.378 C
PGS_21326110+_SBtuc02-10-21.2872- (25793 25918)
Alignment (genomic DNA sequence = upper lines):
ACAAAACCAC TCTAGGGGGT TATTTGACCG GTTTT-GAAA GTTCAGGGGG TAGAATATCC 25851
| |||||| | | ||||| | |||||| || ||||| || | |||||||||| || | || |
AAAAAACCGC -CCAGGGG-T GATTTGAACG GTTTTGGAGA GTTCAGGGGG TAAATTAGAC 160
GGTTTTATAG TTTGGGGGAT GAAGTATTCC ACCCTAAATA GTTTGGGGGG TTATGTAGAC 25911
||||||||| || |||| | ||||| | | | ||| ||| ||||| | ||||||||
TGTTTTATAG TTCCGGGGGT AAAGTAGACA CCACCCCATA GTTCAGGGGG TGATGTAGAC 220
TTTTTCC 25918
|||||||
TTTTTCC 227
********************************************************************************
EST sequence 249 -strand (File: SBtuc02-10-21.5562-)
1 GGGGGTTATT TGACCGGTTT TGAAAGTTCA TAGGGTAGAA TAACCGGTTT AATAGTTCGG
61 GGGGTTAGTA GTCCACCCTA TATAGTTTGG GGAGTTATGT AGACTTTTTC CTCCCCTTAA
121 ATCTAGCGTA TCCAGCTATG CAAGGGTGCA TTTGCATCCG CACTGCACGA CCTTGCATCC
181 GCTTTGTAGT TTTCCCCATG CATCCACTTT GTACTCCTCC CACGCCCCCT CGGTTCCTCC
241 TCCGCAGGCG GGTAGGATTT GGCACACCTT GTAGAACTTG AATAAAGCAT TGACTTGTTC
301 GTCTCAAAGT CCAGCACCGG TGCTCAACAA CCTCCTAAAG AGTCAAGTAT ATATATGGGG
361 TCCTTCGCTT CTTACACAAC CAGAAATGCA AATTTCAACT GGTGAGTCAA CCTGGACCCC
421 CTACACTGCA GAATACCACA TCCAGAGATG GCGATTTTTG TTAGTCCTCA AAATGTGATA
481 GCTGCCCTGA GGCAAAAATC TCATTTTACA CCATCACTCG TTGAGTTAAT GAGCATATAA
541 TCATGATTAT TCAGACCGCT CTGGTTCGCA TGGTCTCCAC ACTGTACCAG AAGGTTCGTC
601 CATTAGGGCG ATGCCCTTGG TAGCAAGGTT TTTCCTGATT CCATCAGATA CCTCAAACTG
661 CTTATTCTTC CTTGCGACAT TTCTCTGCTC AATCTGCTCT TGCAAATTTT CTTCAGTCAG
721 CCCTGCTCGC TTTAATGCTT TGTCCTTCAG TTGCTTCAGT ACCTCTGCCA AAGATGATGA
781 TGGCATCAGA CCAAGTATAG ACAGTTTATT TTTAAGTTCT GTTTCCAAGG CAATCAGTGC
841 TTGAATATAA TCTTCTGGCT GTTTTTGCAA CTGCTGTTGC TTCTGTTGCT GCTTCTTCTG
901 CTGTTGCTGT TTCTTCTTTT GCTGTTCTAT TTTTTGCTGC AGTTTCTTCA AATCATTCAG
961 ACTGCTGTTT ATGGTCTTCA GCAGCTCCAC GAAGCAACGA TCCAGAACAT CTGTGGTTTT
1021 AAGATCATTC GACATATATT TCAAGAATTC TGAATGGTGC TTATCAATCA GATTTTGCTC
1081 CTCAGATGGC ACTGGGACAG CAATACCCTT TTCACGATAT GTAGCTAGCA CTTCCTCACA
1141 GTCATATAGA GTCTGATAAA TGTAGTAGAC ACGATCAGAT GCAATCTCAA GTGCTTGATC
1201 AGAGTGGTTG ACATCTGCCT CGTGC
Predicted gene structure (within gDNA segment 25502 to 31784):
Exon 1 25807 25931 ( 125 n); cDNA 1 124 ( 124 n); score: 0.864
MATCH 21326110+ SBtuc02-10-21.5562- 0.864 125 0.102 C
PGS_21326110+_SBtuc02-10-21.5562- (25807 25931)
Alignment (genomic DNA sequence = upper lines):
GGGGGTTATT TGACCGGTTT TGAAAGTTCA GGGGGTAGAA TATCCGGTTT TATAGTTTGG 25866
|||||||||| |||||||||| |||||||||| |||||||| || ||||||| |||||| ||
GGGGGTTATT TGACCGGTTT TGAAAGTTCA TAGGGTAGAA TAACCGGTTT AATAGTTCGG 60
GGGATGAAGT ATTCCACCCT AAATAGTTTG GGGGGTTATG TAGACTTTTT CCTTTATAGA 25926
||| | ||| | |||||||| | |||||||| ||| |||||| |||||||||| ||| |
GGGGT-TAGT AGTCCACCCT ATATAGTTTG GGGAGTTATG TAGACTTTTT CCTCCCCTTA 119
AATCT 25931
|||||
AATCT 124
********************************************************************************
EST sequence 295 -strand (File: ZMtuc02-12-23.15752-)
1 CGTTGCTGTC GGTTATTTCC TTGTGAGTTG TTTCCTTGTT AGTTATTTCC TTACTAGTTG
61 TTTCCTTGTT AGTTATTTCC TTATAGCTGC CCCCTCTGTG GCTATATAAG CATGTACGAG
121 ACATCATTTG GGATAAGCAA TAATTCAGTC TTAATCTCCC TCTCTTCTCT ACAAACCGAC
181 GGCTGAGGGG TATAACCTCG CCGGCGTGAC GGACAGCGGC TACGAGTTAC GTAGCCGGGG
241 TCCGGCCAGT CGGGGATTTG GCGTCCTTGA CAACCTGGTA TCACGGTCTC GTCGATCCTC
301 ACCCACCCGC TCCAACCACG CCCAGCAGCC GCCAACGCCA CCACCTTTCC CAGCCTCCAC
361 CGACAGCAA
Predicted gene structure (within gDNA segment 24983 to 27148):
Exon 1 26223 26330 ( 108 n); cDNA 101 208 ( 108 n); score: 0.620
Intron 1 26331 26363 ( 33 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.72)
Exon 2 26364 26455 ( 92 n); cDNA 209 300 ( 92 n); score: 0.793
MATCH 21326110+ ZMtuc02-12-23.15752- 0.700 200 0.542 C
PGS_21326110+_ZMtuc02-12-23.15752- (26223 26330,26364 26455)
Alignment (genomic DNA sequence = upper lines):
GCTATAAAGC CTTGTAATCG GAGACCTTTT GAATCAAGCA A-GATTAAAC CTATCTCTCT 26281
|||||| | | |||| | | ||| | || ||||| | ||| | || ||||
GCTATATAAG CATGTACGAG ACATCATTTG GGAT-AAGCA ATAATTCAGT CTTAATCTCC 159
TCTTCTTCCT CT-CAAGCCG CCGGCCAGGG GGTATAACCC GACCAGCGAG GTTAGGCGAG 26340
|||| || || ||| ||| |||| || ||||||||| || ||| |
CTCTCTT-CT CTACAAACCG ACGGCTGAGG GGTATAACCT CGCCGGCGTG .......... 208
GGGGCATAAC CCCGCCAGTT ATCACGGACC AAGGCTACGA GTTACGTAGC CGAGGGCCGC 26400
|||||| |||||||| |||||||||| || || |||
.......... .......... ...ACGGACA GCGGCTACGA GTTACGTAGC CGGGGTCCGG 245
CGTCGCTGGG CAAGAACGTC CTTGACAACC TGGTATCACG GTCACGCCGA TCCTC 26455
| | ||| |||| |||||||||| |||||||||| ||| || ||| |||||
CCAGTCGGGG ATTTGGCGTC CTTGACAACC TGGTATCACG GTCTCGTCGA TCCTC 300
********************************************************************************
EST sequence 309 -strand (File: 9839530-)
1 ACGGGACCGT TGGGATCGTT CATCCAGTTC TTCTCGGGCT GGAAATGGTA GCCGGTGCGC
61 TGCCACTGCA GCATGGCGTT GCTCCAGGGG AAGCCGTCGG CGCCGCCGCC GGCGCNGAGG
121 AGCCCCACCA TCTCGTCCGC CGCGCCGGAG GTCTTCTCCG ACACGCCGGC GTCCCGGCCC
181 CGGCTGCGGG CCGTCTCCGC CAGCGGCGGC ATGTCCGCGA CCACGTCGCC GCCCACGACC
241 CGGTCCACCC TGCCGGACCC GGCCAGCGCG CCGGCCACGA CCAGCACCAC CACGGCCGAG
301 GCGGCCAGCA CGGCCACGCA CGCGCGCCAC CTCACCGCGC CGCCCCGGCG CTCCTCCGAG
361 ACGTCGGACG GGGCCAGCGG CGCGTACGCG TACGGCAGCG CCGTCTCGCC GGGACTAACG
421 GCCCGGGACT CCATTGACGA CGACGATTTC CAAGAAAGAT GTTATGAAAT CGATTCCGGC
481 GGATCGATGG ACGGGTGGAC GGACGCGTGG
Predicted gene structure (within gDNA segment 26468 to 28697):
Exon 1 26468 26500 ( 33 n); cDNA 216 245 ( 30 n); score: 0.667
Intron 1 26501 27255 ( 755 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72)
Exon 2 27256 27302 ( 47 n); cDNA 246 292 ( 47 n); score: 0.723
Intron 2 27303 28128 ( 826 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.60)
Exon 3 28129 28223 ( 95 n); cDNA 293 374 ( 82 n); score: 0.663
Intron 3 28224 28651 ( 428 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0)
Exon 4 28652 28688 ( 37 n); cDNA 375 407 ( 33 n); score: 0.703
MATCH 21326110+ 9839530- 0.663 212 0.416 C
PGS_21326110+_9839530- (26468 26500,27256 27302,28129 28223,28652 28688)
Alignment (genomic DNA sequence = upper lines):
AGCCTCCACT GCCGCAGCCC ACCCTACCCT GCCGCCAACC CCTACGTCCT CCACTGCGTC 26527
|| |||| | ||| |||| || |||| | |
CGCGACCAC- GTCGCCGCCC AC--GACCCG GTC....... .......... .......... 245
CACCCTTCCC CCACCCGCCA TGGCTGATCC CACCATCGCC GATGTCGTCG AGATGCTGAA 26587
.......... .......... .......... .......... .......... .......... 245
ATCCTTCAAG GAGGAGATGT TCTCCATGAA GGCCGACATG CTGGCCCTGA AGGAGAAGTC 26647
.......... .......... .......... .......... .......... .......... 245
GGCTTCGACG TCCGAGAGCA CGGGCGGCGG ACAGCGCGAC TTGGACCGCC CCCCCAAGTT 26707
.......... .......... .......... .......... .......... .......... 245
CCAGAAGCTT GATTTCCCGC GCTTCGACGG CAAGTCCGAC CCTCTGCTCT TCACCAACAA 26767
.......... .......... .......... .......... .......... .......... 245
GTGCGAATCG TATTTTCGGC AGCAGCGCAC TTTGGCAGAG GAGCGCGTCT GGATGGCGTC 26827
.......... .......... .......... .......... .......... .......... 245
CTACAACCTC GAAGATGTCG CCCAGCTCTG GTTCATCCAG TTGCAAGAGG ACGAGGGCAC 26887
.......... .......... .......... .......... .......... .......... 245
TCCTTCCTGG GGTCGATTCA AAGACCTCCT CCACTTGCGG TTTGGGCCGC CCCTGAGGTC 26947
.......... .......... .......... .......... .......... .......... 245
GGCTCCGCTC TTCGAGCTCG CGGAGTGTCG CCGCACAGGT ACTGTCGAAG ATTACTCTAA 27007
.......... .......... .......... .......... .......... .......... 245
TCGTTTTCAG GCCCTGCTGC CGCGCGCCGG GCGATTGGAG GAGACCCAGC GCGTTCAGCT 27067
.......... .......... .......... .......... .......... .......... 245
CTACACAGGG GGACTGCTTC CACCCCTGAG TCACGCCGTT CGCATCCACA ACCCGGAGAC 27127
.......... .......... .......... .......... .......... .......... 245
CCTCGCCGCC GCGATGAGTC TGGCACGCCA GGTCGAGCTG ATGGAGTTGG ATCGCGCCCA 27187
.......... .......... .......... .......... .......... .......... 245
GGCCGCGCTC CCGCCACCAG CCCCGCGCGC TGGTCCCGCA CCCCGGCCGG CGGTCAGGCC 27247
.......... .......... .......... .......... .......... .......... 245
AGCTCCAGCA CCCCTGGCGC TCCCGGCCCC GGCGCCGGCC -CTGCCAGCA CTCCCAGCAC 27306
|| ||||| || ||||||| ||||||||| | |||||| | |||
........CA -CCCTGCCGG ACCCGGCCAG CGCGCCGGCC ACGACCAGCA CCACCA.... 292
CACCACCCAG GGGGCGCGCC CAACCAGGTC AAGCGGCTGT CGACCGAGGA ACAGGCCGAA 27366
.......... .......... .......... .......... .......... .......... 292
CGACGACGCC TCGGTCTTTG CTACAATTGC AACGAGCCGT ACTCCAGGGG TCACAACCGG 27426
.......... .......... .......... .......... .......... .......... 292
GTCTGCCGCC GCATCTTCTT CATTGACGGG GTCGAGCTCG CAGACGACGA GGCCGTTCCT 27486
.......... .......... .......... .......... .......... .......... 292
GACGATGCCG AGCCAGCCGC CCCAGTGTTC TCCCTCCGCG CCGTCACGGG TATGCCCATC 27546
.......... .......... .......... .......... .......... .......... 292
TGTGATACGA TGCAGGTACG CGTGGCCGTG GGCGACGTCA CCCTCACGGC GCTCCTCGAC 27606
.......... .......... .......... .......... .......... .......... 292
ACGGGCTCTA CCCACAACTT CATCGCGGAG ACGGCTGCGA CGCGCACCGG CCTCCCCATC 27666
.......... .......... .......... .......... .......... .......... 292
CTCGCCGACC CGCGCCTCAC CGCCACCGTC GCCAATGGCG AACGCATCGC GTGTCCAGGC 27726
.......... .......... .......... .......... .......... .......... 292
GTGCTGCGAC AGGCGCCGAT CATCATCGAC GGCGAGGGCT TCTGCGTCGA CCTCTACGTT 27786
.......... .......... .......... .......... .......... .......... 292
CTGCCCCTCG CCGGCTACGA TCTGGTCCTG GGCACCCAAT GGCTGGTGAC CCTGGGCCGG 27846
.......... .......... .......... .......... .......... .......... 292
ATTGAGTGGG ACTTCACCGC GCGCACCCTG TCCTTTACCC GCCAGGACAG GCGCGTGTGC 27906
.......... .......... .......... .......... .......... .......... 292
TGGTCCGACG TGGCCACACC CACGCCGGCC CTCAGCGCAG CAGTGACTGC ACCGACGACC 27966
.......... .......... .......... .......... .......... .......... 292
CTCCTGGACG AGCTGCTGCT CGTCTTTGGG AGCCTCTTCG CGGAGCCGGT GGGTCTGCCC 28026
.......... .......... .......... .......... .......... .......... 292
CCTCAGCGAA CCCGCGACCA CAGCATCGTC CTCAAGCCCG GCGCGTTGCC GGTGGCTGTC 28086
.......... .......... .......... .......... .......... .......... 292
CGGCCCTACC GCTACCCCGC TGCGCACAAA GATGAACTCG AGCGGCAGTG CGCCGCCATG 28146
|||| | | || |||| |
.......... .......... .......... .......... ..CGGCCGAG -GCGGCCA-G 308
ATGGAGCAAG GCATCGTACG GCGCAGCGAC TCCGCGTTCT CGTCCCCGGT CCTCCTCGTC 28206
| || | ||| || | |||| | | ||||| | || |||||| |||||| |
CACG-GCCAC GCA-CG--C- GCGCCACCTC ACCGCG--C- CG-CCCCGGC GCTCCTC--C 357
AAGAAGCCGG ACGGGTCGTG GCGCTTCTGC GTCGACTACA GAGCGCTCAA CGCGCTCACC 28266
||| | ||| ||||| |
GAGACGTCGG ACGGGGC... .......... .......... .......... .......... 374
ATCAAAGACG CGTTCCCCAT ACCGGTGGTC GACGAGCTCT TGGATGAGCT CCATGGGGCC 28326
.......... .......... .......... .......... .......... .......... 374
TGCTACTTCA CCAAGCTCGA CCTCCGCTCG GGGTATCATC AAGTCCGCAT GCGGCCGGCG 28386
.......... .......... .......... .......... .......... .......... 374
GACATCCACA AGACGGCGTT CCGCACGCAC GATGGCCTCT ACGAGTTCCT GGTCATGGCC 28446
.......... .......... .......... .......... .......... .......... 374
TTTGGGCTGT GCAATGCTCC GGCCACGTTC CAGGCTTTGA TGAATGATGT TCTTTGTCCG 28506
.......... .......... .......... .......... .......... .......... 374
TTCCTCCGCC GTTTTGTGCT GGTGTTCTTT GACGATATTT TGATTTACAG CAGCACTTGG 28566
.......... .......... .......... .......... .......... .......... 374
GCCGATCACC TACGCCATCT CCGTGCGGTC TTCGACGAGC TGCAGCACCA CAAGCTCTTC 28626
.......... .......... .......... .......... .......... .......... 374
CTCAAGCGCT CCAAGTGCGC GTTCGCTGCA GCGTCGGTCG CGTACCTCGG CCACGTCGTC 28686
| || ||| || || |||| ||| | || ||||
.......... .......... .....CAGCG GCG-CGTACG CGTA---CGG CAGCGCCGTC 405
TC 28688
||
TC 407
********************************************************************************
EST sequence 313 -strand (File: SPtuc02-10-22.79-)
1 CGAAGATGTT GCACAACTCT GGTTCATCCA GTTGCAAGAG GACGAGGGCA CTCCTTCCTG
61 GGGTCGCTTC AAGGACCTTC TCCACCTGCG GTTTGGGCCG CCCTTGAGGT CGGCTCCGCT
121 CTTCGAGCTC GCGGAGTGTC GCCGCACAGG TACTGTCGAG GATTATTCTA ATCGTTTTCA
181 GGCCCTGCTG CCACGCGCCG GGAGATTGGA GGAGACCCAG CGCGTTCAGC TCTACACAGG
241 GGGACTGCTT CCACCCCTGA GTCACGCAGT TCGCATCCAC AACCCGGAGA CCCTCGCTGC
301 CGCGATGAGT CTGGCACGCC AGGTCGAGCT GATGGAGTTG GATCGCGCCC AGGCCGCGCT
361 CCCAGCCCCG CGCGCTGGTC CAGCACCTCG GCCGCCAGTC AGACCGGCTC CAGCACCCCT
421 GGCGCTCCCG GCCCCGGCGC CGGCCCTGCC AGCACTTCCT GCACCACCAC CCAGGCCTCG
481 TGC
Predicted gene structure (within gDNA segment 26468 to 27657):
Exon 1 26837 27325 ( 489 n); cDNA 1 483 ( 483 n); score: 0.935
MATCH 21326110+ SPtuc02-10-22.79- 0.935 489 1.012 C
PGS_21326110+_SPtuc02-10-22.79- (26837 27325)
Alignment (genomic DNA sequence = upper lines):
CGAAGATGTC GCCCAGCTCT GGTTCATCCA GTTGCAAGAG GACGAGGGCA CTCCTTCCTG 26896
||||||||| || || |||| |||||||||| |||||||||| |||||||||| ||||||||||
CGAAGATGTT GCACAACTCT GGTTCATCCA GTTGCAAGAG GACGAGGGCA CTCCTTCCTG 60
GGGTCGATTC AAAGACCTCC TCCACTTGCG GTTTGGGCCG CCCCTGAGGT CGGCTCCGCT 26956
|||||| ||| || ||||| | ||||| |||| |||||||||| ||| |||||| ||||||||||
GGGTCGCTTC AAGGACCTTC TCCACCTGCG GTTTGGGCCG CCCTTGAGGT CGGCTCCGCT 120
CTTCGAGCTC GCGGAGTGTC GCCGCACAGG TACTGTCGAA GATTACTCTA ATCGTTTTCA 27016
|||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| ||||||||||
CTTCGAGCTC GCGGAGTGTC GCCGCACAGG TACTGTCGAG GATTATTCTA ATCGTTTTCA 180
GGCCCTGCTG CCGCGCGCCG GGCGATTGGA GGAGACCCAG CGCGTTCAGC TCTACACAGG 27076
|||||||||| || ||||||| || ||||||| |||||||||| |||||||||| ||||||||||
GGCCCTGCTG CCACGCGCCG GGAGATTGGA GGAGACCCAG CGCGTTCAGC TCTACACAGG 240
GGGACTGCTT CCACCCCTGA GTCACGCCGT TCGCATCCAC AACCCGGAGA CCCTCGCCGC 27136
|||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||||| ||
GGGACTGCTT CCACCCCTGA GTCACGCAGT TCGCATCCAC AACCCGGAGA CCCTCGCTGC 300
CGCGATGAGT CTGGCACGCC AGGTCGAGCT GATGGAGTTG GATCGCGCCC AGGCCGCGCT 27196
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGCGATGAGT CTGGCACGCC AGGTCGAGCT GATGGAGTTG GATCGCGCCC AGGCCGCGCT 360
CCCGCCACCA GCCCCGCGCG CTGGTCCCGC ACCCCGGCCG GCGGTCAGGC CAGCTCCAGC 27256
| ||| |||||||||| ||||||| || ||| |||||| | ||||| | | ||||||||
-----C-CCA GCCCCGCGCG CTGGTCCAGC ACCTCGGCCG CCAGTCAGAC CGGCTCCAGC 414
ACCCCTGGCG CTCCCGGCCC CGGCGCCGGC CCTGCCAGCA CTCCCAGCAC CACCACCCAG 27316
|||||||||| |||||||||| |||||||||| |||||||||| || || |||| ||||||||||
ACCCCTGGCG CTCCCGGCCC CGGCGCCGGC CCTGCCAGCA CTTCCTGCAC CACCACCCAG 474
GGGGCGCGC 27325
| || ||
GCCTCGTGC 483
********************************************************************************
EST sequence 7 +strand (File: OStuc02-10-21.1380+)
1 TCTGGTCTTC CCCCACCCGC ATCCCCCGGC CTCCTCACCG CAGCCGCAAA AGCCAAGCCG
61 CCATGGCAAC CGCCGCCGCG TCGGATCTGG AGAGCAAGGC CAAGGCGGCC TTCGTCGACG
121 ACGACTTCGA GCTCGCCGCC GAGCTCTACA CGCAGGCAAT CGAGGCCAGC CCCGCCACCG
181 CCGAGCTCTA CGCCGACCGC GCCCAGGCCC ATATCAAGCT AGGCAACTAC ACTGAGGCTG
241 TAGCTGATGC TAACAAGGCC ATTGAACTTG ACCCATCAAT GCACAAGGCT TATCTTCGTA
301 AAGGCGCTGC ATGTATACGA CTGGAGGAGT ATCAAACTGC AAAAGCAGCT CTTGAATTTG
361 GGTTACTCGT TCGCATCTGG TGACTCAAGG TTTACTCGCC TAATGAAGGA GTGTGATGAG
421 CGCATTGCTG AAGGAGCTCA CGAGAGTTTA TTGATTCTAC GACCTTTATC TCCTCCTACT
481 ATCCTTTCAC TGTTTTGTTC TTATGTGACG GTATCTTTTT TTTTCTTTCT TCCCTTCCTC
541 CTCTTTTTCT CTTTTCGTCT TTTCGCTCGC GTTTAATGAT TTTTATTTCG TTACTTAGCG
601 CCGTTTGTAT TTGTTAGATG TTATGTACCT CGTTTTTTTT TGCTTATCTA CCGCTTGTTT
661 TTTCCGTCTC ATACGGTTGA TATCTCTATA CTTGTTATAC TTCTTTTTTT TTATATAGAT
721 CATTCCTAGT ATGTCACCTT TTCGTTTTTC TTTTTCTTTT ATATTTTAAT TTTTTTATAT
781 ATATTGTTGG
Predicted gene structure (within gDNA segment 26202 to 30401):
Exon 1 26945 26971 ( 27 n); cDNA 114 139 ( 26 n); score: 0.741
Intron 1 26972 27458 ( 487 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.66)
Exon 2 27459 27528 ( 70 n); cDNA 140 203 ( 64 n); score: 0.643
MATCH 21326110+ OStuc02-10-21.1380+ 0.643 97 0.123 C
PGS_21326110+_OStuc02-10-21.1380+ (26945 26971,27459 27528)
Alignment (genomic DNA sequence = upper lines):
GTCGGCTCCG CTCTTCGAGC TCGCGGAGTG TCGCCGCACA GGTACTGTCG AAGATTACTC 27004
|||| | || |||||||| |||| |
GTCGACGACG -ACTTCGAGC TCGCCGC... .......... .......... .......... 139
TAATCGTTTT CAGGCCCTGC TGCCGCGCGC CGGGCGATTG GAGGAGACCC AGCGCGTTCA 27064
.......... .......... .......... .......... .......... .......... 139
GCTCTACACA GGGGGACTGC TTCCACCCCT GAGTCACGCC GTTCGCATCC ACAACCCGGA 27124
.......... .......... .......... .......... .......... .......... 139
GACCCTCGCC GCCGCGATGA GTCTGGCACG CCAGGTCGAG CTGATGGAGT TGGATCGCGC 27184
.......... .......... .......... .......... .......... .......... 139
CCAGGCCGCG CTCCCGCCAC CAGCCCCGCG CGCTGGTCCC GCACCCCGGC CGGCGGTCAG 27244
.......... .......... .......... .......... .......... .......... 139
GCCAGCTCCA GCACCCCTGG CGCTCCCGGC CCCGGCGCCG GCCCTGCCAG CACTCCCAGC 27304
.......... .......... .......... .......... .......... .......... 139
ACCACCACCC AGGGGGCGCG CCCAACCAGG TCAAGCGGCT GTCGACCGAG GAACAGGCCG 27364
.......... .......... .......... .......... .......... .......... 139
AACGACGACG CCTCGGTCTT TGCTACAATT GCAACGAGCC GTACTCCAGG GGTCACAACC 27424
.......... .......... .......... .......... .......... .......... 139
GGGTCTGCCG CCGCATCTTC TTCATTGACG GGGTCGAGCT CGCAGACGAC GAGGCCGTTC 27484
|||||| | | ||| | ||| | ||
.......... .......... .......... ....CGAGCT CT-ACACG-C -AGG-CAATC 161
CTGACGATGC CGAGCCAGCC GCCCCAGTGT TCTCCCTCCG CGCC 27528
| | | || | |||| || ||| | | | || ||| ||||
GAGGCCA-GC CCCGCCA-CC GCCGAGCTCT ACGCCGACCG CGCC 203
********************************************************************************
EST sequence 111 +strand (File: TAtuc02-12-22.11437+)
1 CCACGCGTCC GGCGATGCCT GTGACCTAGC CCGTCTCCCC CAGCGAACCC CGCCTCCTCT
61 CCTGCCGCCG CCGCCGCGCC CCCTTCTTCC CTTCTCCATG CTCGCCGCTG CCGACGCCGC
121 GTCTGCCAGC CGCCCCGCCT CGAGCCAGCC GCCGATCGGT AAAAACCTAA CCTCCACACC
181 CACGCCCCCA CCAGTCCCTC CCTCCTCTTC CTCGACCTCC CTCCTAGCTG CCTCCGCCTC
241 CCCTCCGCGG TCGACCTCCT CGTTGCCGGT GATGCTCCAG CGCCTTGGCC CGGTCGTCTC
301 TGACTCTTGC CGTGCTCTCT CATGCTGCTG TGCCTCCTGG ACGACGCTCG CGTGCCTCGG
361 ATGCACCCCC TTCTCTCCCG AGCTCCAGAT CCATGGCTGC AGCGGCGAGG TAAGCAGCGC
421 AAAGGCTCCC TCCTAGCACC TCCTACTAAA TACCCTTTTT TTTGTTCAAA TACCAAAATA
481 CTTTGTCAGG GTTGTCAATG GAAAAGAAGC AACCTTGTTA TTTAGTTCAG TCCACCATAA
541 AGACAGCTCA GGAGACAACC TTCTTCTGAA ATCATTGATT TGTTTTTTTT TAGAAAAGGA
601 GTACCACCCC CAACCTCTGA TTGATCTGGT ATANN
Predicted gene structure (within gDNA segment 26495 to 29737):
Exon 1 26495 26543 ( 49 n); cDNA 166 212 ( 47 n); score: 0.612
Intron 1 26544 27653 (1110 n); Pd: 0.000 (s: 0.61), Pa: 0.000 (s: 0.70)
Exon 2 27654 27700 ( 47 n); cDNA 213 256 ( 44 n); score: 0.702
Intron 2 27701 28641 ( 941 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.64)
Exon 3 28642 28698 ( 57 n); cDNA 257 310 ( 54 n); score: 0.632
MATCH 21326110+ TAtuc02-12-22.11437+ 0.632 153 0.241 C
PGS_21326110+_TAtuc02-12-22.11437+ (26495 26543,27654 27700,28642 28698)
Alignment (genomic DNA sequence = upper lines):
CCTGCCGCCA ACCCCTACGT CCTCCACTGC GTCCACCCTT CCCCCACCCG CCATGGCTGA 26554
||| | | || || ||| || |||| |||| || | || | ||
CCTAACCTCC ACACCCACG- CCCCCAC-CA GTCCCTCCCT CCTCTTCCT. .......... 212
TCCCACCATC GCCGATGTCG TCGAGATGCT GAAATCCTTC AAGGAGGAGA TGTTCTCCAT 26614
.......... .......... .......... .......... .......... .......... 212
GAAGGCCGAC ATGCTGGCCC TGAAGGAGAA GTCGGCTTCG ACGTCCGAGA GCACGGGCGG 26674
.......... .......... .......... .......... .......... .......... 212
CGGACAGCGC GACTTGGACC GCCCCCCCAA GTTCCAGAAG CTTGATTTCC CGCGCTTCGA 26734
.......... .......... .......... .......... .......... .......... 212
CGGCAAGTCC GACCCTCTGC TCTTCACCAA CAAGTGCGAA TCGTATTTTC GGCAGCAGCG 26794
.......... .......... .......... .......... .......... .......... 212
CACTTTGGCA GAGGAGCGCG TCTGGATGGC GTCCTACAAC CTCGAAGATG TCGCCCAGCT 26854
.......... .......... .......... .......... .......... .......... 212
CTGGTTCATC CAGTTGCAAG AGGACGAGGG CACTCCTTCC TGGGGTCGAT TCAAAGACCT 26914
.......... .......... .......... .......... .......... .......... 212
CCTCCACTTG CGGTTTGGGC CGCCCCTGAG GTCGGCTCCG CTCTTCGAGC TCGCGGAGTG 26974
.......... .......... .......... .......... .......... .......... 212
TCGCCGCACA GGTACTGTCG AAGATTACTC TAATCGTTTT CAGGCCCTGC TGCCGCGCGC 27034
.......... .......... .......... .......... .......... .......... 212
CGGGCGATTG GAGGAGACCC AGCGCGTTCA GCTCTACACA GGGGGACTGC TTCCACCCCT 27094
.......... .......... .......... .......... .......... .......... 212
GAGTCACGCC GTTCGCATCC ACAACCCGGA GACCCTCGCC GCCGCGATGA GTCTGGCACG 27154
.......... .......... .......... .......... .......... .......... 212
CCAGGTCGAG CTGATGGAGT TGGATCGCGC CCAGGCCGCG CTCCCGCCAC CAGCCCCGCG 27214
.......... .......... .......... .......... .......... .......... 212
CGCTGGTCCC GCACCCCGGC CGGCGGTCAG GCCAGCTCCA GCACCCCTGG CGCTCCCGGC 27274
.......... .......... .......... .......... .......... .......... 212
CCCGGCGCCG GCCCTGCCAG CACTCCCAGC ACCACCACCC AGGGGGCGCG CCCAACCAGG 27334
.......... .......... .......... .......... .......... .......... 212
TCAAGCGGCT GTCGACCGAG GAACAGGCCG AACGACGACG CCTCGGTCTT TGCTACAATT 27394
.......... .......... .......... .......... .......... .......... 212
GCAACGAGCC GTACTCCAGG GGTCACAACC GGGTCTGCCG CCGCATCTTC TTCATTGACG 27454
.......... .......... .......... .......... .......... .......... 212
GGGTCGAGCT CGCAGACGAC GAGGCCGTTC CTGACGATGC CGAGCCAGCC GCCCCAGTGT 27514
.......... .......... .......... .......... .......... .......... 212
TCTCCCTCCG CGCCGTCACG GGTATGCCCA TCTGTGATAC GATGCAGGTA CGCGTGGCCG 27574
.......... .......... .......... .......... .......... .......... 212
TGGGCGACGT CACCCTCACG GCGCTCCTCG ACACGGGCTC TACCCACAAC TTCATCGCGG 27634
.......... .......... .......... .......... .......... .......... 212
AGACGGCTGC GACGCGCACC GGCCTCCCCA TCCTCGCCGA CCCGCGCCTC ACCGCCACCG 27694
| | ||| ||| |||| || | || |||||| || || | |
.......... .........C GACCT-CCC- TCCTAGCTG- CCTCCGCCTC CCCTCCGCGG 250
TCGCCAATGG CGAACGCATC GCGTGTCCAG GCGTGCTGCG ACAGGCGCCG ATCATCATCG 27754
||| |
TCGACC.... .......... .......... .......... .......... .......... 256
ACGGCGAGGG CTTCTGCGTC GACCTCTACG TTCTGCCCCT CGCCGGCTAC GATCTGGTCC 27814
.......... .......... .......... .......... .......... .......... 256
TGGGCACCCA ATGGCTGGTG ACCCTGGGCC GGATTGAGTG GGACTTCACC GCGCGCACCC 27874
.......... .......... .......... .......... .......... .......... 256
TGTCCTTTAC CCGCCAGGAC AGGCGCGTGT GCTGGTCCGA CGTGGCCACA CCCACGCCGG 27934
.......... .......... .......... .......... .......... .......... 256
CCCTCAGCGC AGCAGTGACT GCACCGACGA CCCTCCTGGA CGAGCTGCTG CTCGTCTTTG 27994
.......... .......... .......... .......... .......... .......... 256
GGAGCCTCTT CGCGGAGCCG GTGGGTCTGC CCCCTCAGCG AACCCGCGAC CACAGCATCG 28054
.......... .......... .......... .......... .......... .......... 256
TCCTCAAGCC CGGCGCGTTG CCGGTGGCTG TCCGGCCCTA CCGCTACCCC GCTGCGCACA 28114
.......... .......... .......... .......... .......... .......... 256
AAGATGAACT CGAGCGGCAG TGCGCCGCCA TGATGGAGCA AGGCATCGTA CGGCGCAGCG 28174
.......... .......... .......... .......... .......... .......... 256
ACTCCGCGTT CTCGTCCCCG GTCCTCCTCG TCAAGAAGCC GGACGGGTCG TGGCGCTTCT 28234
.......... .......... .......... .......... .......... .......... 256
GCGTCGACTA CAGAGCGCTC AACGCGCTCA CCATCAAAGA CGCGTTCCCC ATACCGGTGG 28294
.......... .......... .......... .......... .......... .......... 256
TCGACGAGCT CTTGGATGAG CTCCATGGGG CCTGCTACTT CACCAAGCTC GACCTCCGCT 28354
.......... .......... .......... .......... .......... .......... 256
CGGGGTATCA TCAAGTCCGC ATGCGGCCGG CGGACATCCA CAAGACGGCG TTCCGCACGC 28414
.......... .......... .......... .......... .......... .......... 256
ACGATGGCCT CTACGAGTTC CTGGTCATGG CCTTTGGGCT GTGCAATGCT CCGGCCACGT 28474
.......... .......... .......... .......... .......... .......... 256
TCCAGGCTTT GATGAATGAT GTTCTTTGTC CGTTCCTCCG CCGTTTTGTG CTGGTGTTCT 28534
.......... .......... .......... .......... .......... .......... 256
TTGACGATAT TTTGATTTAC AGCAGCACTT GGGCCGATCA CCTACGCCAT CTCCGTGCGG 28594
.......... .......... .......... .......... .......... .......... 256
TCTTCGACGA GCTGCAGCAC CACAAGCTCT TCCTCAAGCG CTCCAAGTGC GCGTTCGCTG 28654
| | |||| ||
.......... .......... .......... .......... .......TCC TCGTT-GC-- 266
CAGCGTCGGT CGCGTACCTC GGCCACGTCG TCTCTGCTGC TGGC 28698
| | | | | | | ||| |||| |||| |||||| | | ||
CGGTGATGCT CCAGCGCCTT GGCCCGGTCG TCTCTGACTC TTGC 310
********************************************************************************
EST sequence 151 -strand (File: 16310067-)
1 GCGAGCGCAC AACCAGCGGC CCCCCCCCAC CCCGGCCCAA CGCGACAGCG GAAGACCGCC
61 AAGGGGGCCC ACCAACGGCA AAAAAGCGAG CCGCCCCGAC CCCCCCCCCC AAGAGAGGAA
121 CCCGGCCCAC GAAGGAGGGA AAAGGAACCC CCCCACCCCC CCGGGGCCCA AAAAAAAAAA
181 AAGGAAGGGG GCAAACCCTT ACCCCCCCCA AAAGGAGGGA CCGGACCAGG GCCCCAGGAA
241 GGCGAAGTTG CCGAGCCAAC CCAAGCGGAA AGGCGGAGGA GGAGGGCCAT NTCATTTCAT
301 CTCTTCACGC GCCGCCGCGN NGACGGATTT AGCAGAAGAG GTAGCCGAAG NCGCCGGCGG
361 CGAAGGAGCC CGCGGCGAGG GGCACGNCGG CGGCGGCGTC GGAGGCGGGA GCCGGGGCCG
421 GGGCCTCGGC GGCGGCCGCT GAGGCGACGA GCGCGGCGGC CATGGCGCCG CCGGCGACGA
481 GCTTCATCCT GAGACCGGCC ATTGGCGACG CGGGTTGGCT CCTGGTGGTG CTGGGAGGTG
541 ACCTTGCTTG CTGCTGCTGA CTCTGCTGTG AGATCTCTCT AGGGGGGAGC TAGAGAGATG
601 CTGCACGCGG ATGAGCGAGA GCCCCACAGC GGCGG
Predicted gene structure (within gDNA segment 29964 to 26507):
Exon 1 29075 29023 ( 53 n); cDNA 402 451 ( 50 n); score: 0.717
Intron 1 29022 28717 ( 306 n); Pd: 0.000 (s: 0.71), Pa: 0.000 (s: 0)
Exon 2 28716 28692 ( 25 n); cDNA 452 476 ( 25 n); score: 0.760
MATCH 21326110- 16310067- 0.717 78 0.123 C
PGS_21326110-_16310067- (29075 29023,28716 28692)
Alignment (genomic DNA sequence = upper lines):
GCGGCGAGAG CTCGGTGCCG CGGCGCCACG G-GGCGGCTG AAGAAGGCGA TGGGGTGGCC 29017
| |||| ||| | ||| |||| || ||| || | |||||| | | |||||| | |
GAGGCGGGAG C-CGGGGCCG -GG-GCCTCG GCGGCGGCCG CTG-AGGCGA CGAG...... 451
CTCCTGGACC AGTACCGCCC CGAAGCCATG CGACGATGCG TCGCACTCGA CGGTGAACTG 28957
.......... .......... .......... .......... .......... .......... 451
CTTGGAGAAG TCCGGCATGG CGAGCACTGG TGCCGAGGTC ACGGCGTCTT TGAGGGCGTC 28897
.......... .......... .......... .......... .......... .......... 451
GAACGCAGCG GCGGCCTCGG CGGACCACGA GAAGCCGTCC TTCTTCAGCA GGGCGGTGAG 28837
.......... .......... .......... .......... .......... .......... 451
AGGTGCTGCG ATGGTCCCAT AATTGTGGAC GAACTTGCGG TAGTAGCCGG CGAGTCCTAG 28777
.......... .......... .......... .......... .......... .......... 451
GAACCCCCGC ACTGCCCGGG CGGACCGTGG CTGGGGCCAG TCCCGCACGG CTTGGAGCTT 28717
.......... .......... .......... .......... .......... .......... 451
GGCGGGGTCC ATGGCGACGC CAGCA 28692
|||| | || |||||| ||| | ||
CGCGGCGGCC ATGGCGCCGC CGGCG 476
********************************************************************************
EST sequence 66 +strand (File: 14592426+)
1 GCACGAGGGT ACCGCTACCC GGCGGCGCAC AAAGATGAGC TGGAGCGGCA ATGCGCGGCC
61 ATGATCGAGC AAGGCATCGT CCGGCGCAGC GACTCCGCGT TCTCGTCCCC GGTCCACCTC
121 GTCAAGAAAC CGGACGGATC GTGGCGCTTC TGCGTGGACT ACAGGGCGCT CAATGCGCTC
181 ACGGTCAAGG ACGCCTTCCC GATCCCCGTC GTCGATGAGC TCTTGGACGA GCTCCATGGA
241 GCGTGTTTCT TCACCAAGCT CGACCTACGC TCAGGGTACC ATCAGGTCCG CATGCGGCCG
301 AGCGACATCC ACAAGACGGC GTTCCGCACC CATGACGGCC TCTACGAGTT CCTGGTCATG
361 GCGTTTGGGC TTTGCAACGC TCCTGCCACG TTCCAGGCCC TGATGAACGA TGTCCTGCGG
421 CCGTTCCTTC GCCGTTTTGT GCTGGTATTT TTTGACGACA TTTTGATTTA CAGCCATACA
481 TGGGCAGACC ATCTGCGTCA CCTGCGCGCC GTCTTCGGGG CGCT
Predicted gene structure (within gDNA segment 27688 to 29898):
Exon 1 28084 28607 ( 524 n); cDNA 1 524 ( 524 n); score: 0.857
MATCH 21326110+ 14592426+ 0.857 524 1.000 C
PGS_21326110+_14592426+ (28084 28607)
Alignment (genomic DNA sequence = upper lines):
GTCCGGCCCT ACCGCTACCC CGCTGCGCAC AAAGATGAAC TCGAGCGGCA GTGCGCCGCC 28143
| || | |||||||||| || |||||| |||||||| | | |||||||| ||||| |||
GCACGAGGGT ACCGCTACCC GGCGGCGCAC AAAGATGAGC TGGAGCGGCA ATGCGCGGCC 60
ATGATGGAGC AAGGCATCGT ACGGCGCAGC GACTCCGCGT TCTCGTCCCC GGTCCTCCTC 28203
||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| ||||| ||||
ATGATCGAGC AAGGCATCGT CCGGCGCAGC GACTCCGCGT TCTCGTCCCC GGTCCACCTC 120
GTCAAGAAGC CGGACGGGTC GTGGCGCTTC TGCGTCGACT ACAGAGCGCT CAACGCGCTC 28263
|||||||| | ||||||| || |||||||||| ||||| |||| |||| ||||| ||| ||||||
GTCAAGAAAC CGGACGGATC GTGGCGCTTC TGCGTGGACT ACAGGGCGCT CAATGCGCTC 180
ACCATCAAAG ACGCGTTCCC CATACCGGTG GTCGACGAGC TCTTGGATGA GCTCCATGGG 28323
|| |||| | |||| ||||| || || || ||||| |||| ||||||| || |||||||||
ACGGTCAAGG ACGCCTTCCC GATCCCCGTC GTCGATGAGC TCTTGGACGA GCTCCATGGA 240
GCCTGCTACT TCACCAAGCT CGACCTCCGC TCGGGGTATC ATCAAGTCCG CATGCGGCCG 28383
|| || | || |||||||||| |||||| ||| || ||||| | |||| ||||| ||||||||||
GCGTGTTTCT TCACCAAGCT CGACCTACGC TCAGGGTACC ATCAGGTCCG CATGCGGCCG 300
GCGGACATCC ACAAGACGGC GTTCCGCACG CACGATGGCC TCTACGAGTT CCTGGTCATG 28443
||||||| |||||||||| ||||||||| || || |||| |||||||||| ||||||||||
AGCGACATCC ACAAGACGGC GTTCCGCACC CATGACGGCC TCTACGAGTT CCTGGTCATG 360
GCCTTTGGGC TGTGCAATGC TCCGGCCACG TTCCAGGCTT TGATGAATGA TGTTCTTTGT 28503
|| ||||||| | ||||| || ||| |||||| |||||||| ||||||| || ||| || |
GCGTTTGGGC TTTGCAACGC TCCTGCCACG TTCCAGGCCC TGATGAACGA TGTCCTGCGG 420
CCGTTCCTCC GCCGTTTTGT GCTGGTGTTC TTTGACGATA TTTTGATTTA CAGCAGCACT 28563
|||||||| | |||||||||| |||||| || |||||||| | |||||||||| |||| ||
CCGTTCCTTC GCCGTTTTGT GCTGGTATTT TTTGACGACA TTTTGATTTA CAGCCATACA 480
TGGGCCGATC ACCTACGCCA TCTCCGTGCG GTCTTCGACG AGCT 28607
||||| || | | || || || || || || ||||||| | |||
TGGGCAGACC ATCTGCGTCA CCTGCGCGCC GTCTTCGGGG CGCT 524
********************************************************************************
EST sequence 152 -strand (File: HVtuc02-11-10.7677-)
1 GAATCAAATA AATGGTCTCA TTCATAGGAA GAAAAGAGAG TAAGCACCTG ATCACCAACA
61 CAAAGAATGG AACGCCGGCG CACGTACGTA CGTACTAGGA CACCTCCCAC ACCACCGCGG
121 CCCATACATA CACACACGCA CGCGCCCACA CCTCACACCC CCAACACGAC GGAACGAACA
181 CAGCGCACAG CGAGACGACG TCGACGAGCA AACCAAGCCG GAGAGACGAA GAAGAAGGGC
241 CATCTCATCT CATCTCATCA CGCGCCGCCG CGGCGACGGA TCTAGCAGAA GAGGTAGCCG
301 AAGGCGGCGG CGGCGAAGGA GGCCGCGGCG AGGGGCACGG CGGCGGCGGC GTCGGAGGCG
361 GGAGCCGGGG CCGGGGCCTC GGCGGCGGCC GCTGAGGCGA CGAGCGCGGC GGCCATGGCG
421 GCGACGGCGA CGAGCTTCAT CCTGAGACCG GCCATTGGCG ACGCGGGTTG GCTCCTGGTG
481 GTGCTGGGAG GTGACCTTGC TTGCTGCTGC TGACTCTGCT GTGAGATCTC TCTAGGGGGG
541 AGCTAGAGAG ATGCTGCACG CGGATGAGCG AGAGGCGGAG AGTGGCG
Predicted gene structure (within gDNA segment 29729 to 26512):
Exon 1 29075 29023 ( 53 n); cDNA 355 404 ( 50 n); score: 0.717
Intron 1 29022 28891 ( 132 n); Pd: 0.000 (s: 0.71), Pa: 0.000 (s: 0.65)
Exon 2 28890 28842 ( 49 n); cDNA 405 450 ( 46 n); score: 0.653
Intron 2 28841 27706 (1136 n); Pd: 0.000 (s: 0.65), Pa: 0.000 (s: 0)
Exon 3 27705 27693 ( 13 n); cDNA 451 463 ( 13 n); score: 1.000
MATCH 21326110- HVtuc02-11-10.7677- 0.717 115 0.196 C
PGS_21326110-_HVtuc02-11-10.7677- (29075 29023,28890 28842,27705 27693)
Alignment (genomic DNA sequence = upper lines):
GCGGCGAGAG CTCGGTGCCG CGGCGCCACG G-GGCGGCTG AAGAAGGCGA TGGGGTGGCC 29017
| |||| ||| | ||| |||| || ||| || | |||||| | | |||||| | |
GAGGCGGGAG C-CGGGGCCG -GG-GCCTCG GCGGCGGCCG CTG-AGGCGA CGAG...... 404
CTCCTGGACC AGTACCGCCC CGAAGCCATG CGACGATGCG TCGCACTCGA CGGTGAACTG 28957
.......... .......... .......... .......... .......... .......... 404
CTTGGAGAAG TCCGGCATGG CGAGCACTGG TGCCGAGGTC ACGGCGTCTT TGAGGGCGTC 28897
.......... .......... .......... .......... .......... .......... 404
GAACGCAGCG GCGGCCTCGG CGGACCACGA GAAGCCGTCC TTCTTCAGCA GGGCGGTGAG 28837
||| |||||| || ||| | ||| | | || | ||| || | | ||
......CGCG GCGGCCATGG CGG-CGACG- G-CGACGAGC TTCATCCTGA GACCG..... 450
AGGTGCTGCG ATGGTCCCAT AATTGTGGAC GAACTTGCGG TAGTAGCCGG CGAGTCCTAG 28777
.......... .......... .......... .......... .......... .......... 450
GAACCCCCGC ACTGCCCGGG CGGACCGTGG CTGGGGCCAG TCCCGCACGG CTTGGAGCTT 28717
.......... .......... .......... .......... .......... .......... 450
GGCGGGGTCC ATGGCGACGC CAGCAGCAGA GACGACGTGG CCGAGGTACG CGACCGACGC 28657
.......... .......... .......... .......... .......... .......... 450
TGCAGCGAAC GCGCACTTGG AGCGCTTGAG GAAGAGCTTG TGGTGCTGCA GCTCGTCGAA 28597
.......... .......... .......... .......... .......... .......... 450
GACCGCACGG AGATGGCGTA GGTGATCGGC CCAAGTGCTG CTGTAAATCA AAATATCGTC 28537
.......... .......... .......... .......... .......... .......... 450
AAAGAACACC AGCACAAAAC GGCGGAGGAA CGGACAAAGA ACATCATTCA TCAAAGCCTG 28477
.......... .......... .......... .......... .......... .......... 450
GAACGTGGCC GGAGCATTGC ACAGCCCAAA GGCCATGACC AGGAACTCGT AGAGGCCATC 28417
.......... .......... .......... .......... .......... .......... 450
GTGCGTGCGG AACGCCGTCT TGTGGATGTC CGCCGGCCGC ATGCGGACTT GATGATACCC 28357
.......... .......... .......... .......... .......... .......... 450
CGAGCGGAGG TCGAGCTTGG TGAAGTAGCA GGCCCCATGG AGCTCATCCA AGAGCTCGTC 28297
.......... .......... .......... .......... .......... .......... 450
GACCACCGGT ATGGGGAACG CGTCTTTGAT GGTGAGCGCG TTGAGCGCTC TGTAGTCGAC 28237
.......... .......... .......... .......... .......... .......... 450
GCAGAAGCGC CACGACCCGT CCGGCTTCTT GACGAGGAGG ACCGGGGACG AGAACGCGGA 28177
.......... .......... .......... .......... .......... .......... 450
GTCGCTGCGC CGTACGATGC CTTGCTCCAT CATGGCGGCG CACTGCCGCT CGAGTTCATC 28117
.......... .......... .......... .......... .......... .......... 450
TTTGTGCGCA GCGGGGTAGC GGTAGGGCCG GACAGCCACC GGCAACGCGC CGGGCTTGAG 28057
.......... .......... .......... .......... .......... .......... 450
GACGATGCTG TGGTCGCGGG TTCGCTGAGG GGGCAGACCC ACCGGCTCCG CGAAGAGGCT 27997
.......... .......... .......... .......... .......... .......... 450
CCCAAAGACG AGCAGCAGCT CGTCCAGGAG GGTCGTCGGT GCAGTCACTG CTGCGCTGAG 27937
.......... .......... .......... .......... .......... .......... 450
GGCCGGCGTG GGTGTGGCCA CGTCGGACCA GCACACGCGC CTGTCCTGGC GGGTAAAGGA 27877
.......... .......... .......... .......... .......... .......... 450
CAGGGTGCGC GCGGTGAAGT CCCACTCAAT CCGGCCCAGG GTCACCAGCC ATTGGGTGCC 27817
.......... .......... .......... .......... .......... .......... 450
CAGGACCAGA TCGTAGCCGG CGAGGGGCAG AACGTAGAGG TCGACGCAGA AGCCCTCGCC 27757
.......... .......... .......... .......... .......... .......... 450
GTCGATGATG ATCGGCGCCT GTCGCAGCAC GCCTGGACAC GCGATGCGTT CGCCATTGGC 27697
|||||||||
.......... .......... .......... .......... .......... .GCCATTGGC 459
GACG 27693
||||
GACG 463
********************************************************************************
EST sequence 11 +strand (File: 3766995+)
1 GGCAGGTGAT TTTGGTACAA TGATAGTTCA TCCTGAAGAC GGCGACGAAT TGATGAATCA
61 CCCATCTTCC CAAGTTCAGA ATTCATACCA GGCCTTGGGA GCATAAACTC TTTCACACAT
121 GATCCAAAGA GGGCCGAGCT TATTTCAAAT TTTTGGGCGG AGAACACAGC TGATATTGAA
181 GCCAATAAAG AGCAATATCT AGATGAACAT CCTGATATGC AGGAAGCAAA AACAATGCCA
241 CCTTCAACTG GAACGGTTAA AAAGCTTAAA GTTGCAGAAG GGACTATGCC ACGCCATGGT
301 AATCAAGTTA GCTCTGCCTC ACCAGGTGTT GCTAGCACAA TGACCAAATT AAACAGCAGC
361 CCCAGCCGTA AAGCATTCTC AGTTTCAGGG TAAGCTCTGG TCAATTTATG NCTGGCGGGG
421 CAACACCGTT CCTATGACCA TTCCTCAAGG CAATTG
Predicted gene structure (within gDNA segment 31086 to 32640):
Exon 1 31403 31553 ( 151 n); cDNA 6 155 ( 150 n); score: 0.874
Intron 1 31554 31664 ( 111 n); Pd: 0.945 (s: 0.90), Pa: 0.856 (s: 0.84)
Exon 2 31665 31896 ( 232 n); cDNA 156 394 ( 239 n); score: 0.763
Intron 2 31897 32089 ( 193 n); Pd: 0.816 (s: 0.80), Pa: 0.165 (s: 0.72)
Exon 3 32090 32147 ( 58 n); cDNA 395 456 ( 62 n); score: 0.741
MATCH 21326110+ 3766995+ 0.798 441 0.967 C
PGS_21326110+_3766995+ (31403 31553,31665 31896,32090 32147)
Alignment (genomic DNA sequence = upper lines):
GTGATTTTGG TACTATGATA GTTCATACTG AAGATGGCGA CGAAGTGGCA GAATCACCCA 31462
|||||||||| ||| |||||| |||||| ||| |||| ||||| |||| | | ||||||||||
GTGATTTTGG TACAATGATA GTTCATCCTG AAGACGGCGA CGAA-TTGAT GAATCACCCA 64
TTTTCCCAAG AACAGAGTTC ATACCTGGCC TTGGTAGCAT CAATTCTTTC ACACATGATC 31522
| |||||||| |||| ||| ||||| |||| |||| ||||| || |||||| ||||||||||
TCTTCCCAAG TTCAGAATTC ATACCAGGCC TTGGGAGCAT AAACTCTTTC ACACATGATC 124
CAAAGAGAGC GGAACTTATT TCAAGTTTTT GGTATGAGAA ACATACATTT ATCTTATTGT 31582
||||||| || || |||||| |||| ||||| |
CAAAGAGGGC CGAGCTTATT TCAAATTTTT G......... .......... .......... 155
TTCTGTTTTC AGTCATACAA AGCAGCTCAA TGTGAAGTTT TTATTTATCC CATCACAAAT 31642
.......... .......... .......... .......... .......... .......... 155
CTTATGCACA GTTTCTTGAT AGGGCGGAGA ACACAGGTGA TAGTGATGCC AATAAAGATC 31702
|||||||| |||||| ||| || ||| ||| |||||||| |
.......... .......... ..GGCGGAGA ACACAGCTGA TATTGAAGCC AATAAAGAGC 193
GGGATTTAGA TGATCGTCCT GACATACAGG AATCAAAAGC AATCCCACCT TTAACTGGAA 31762
|| |||| ||| | |||| || || |||| || ||||| | ||| |||||| | ||||||||
AATATCTAGA TGAACATCCT GATATGCAGG AAGCAAAAAC AATGCCACCT TCAACTGGAA 253
CAGTGAAGAA GCATATTGGT GCAGAAGGGA CTATAAGACG CCATGATAAT CAAGTTA-AT 31821
| || || || || || | | |||||||||| |||| ||| ||||| |||| ||||||| |
CGGTTAAAAA GCTTAAAGTT GCAGAAGGGA CTATGCCACG CCATGGTAAT CAAGTTAGCT 313
TTG--TCACC AGGATTTGCG AACAC-A--A CTAAATTGAA CAGCAGCCCG AGCCGCAAAG 31876
|| ||||| ||| |||| | ||| | | | ||||| || ||||||||| ||||| ||||
CTGCCTCACC AGGTGTTGCT AGCACAATGA CCAAATTAAA CAGCAGCCCC AGCCGTAAAG 373
CGTTTTC-GG TTCAGGATAA GGTATGGTTC ATGGTTTAGA CATCAGCTAT TTGTTCCCTT 31935
| || || | |||||| ||| |
CATTCTCAGT TTCAGGGTAA G......... .......... .......... .......... 394
GTCTGAGGCT AAGGTATTTT AGATTTAGCT ATTGCACACA TTCCCCTTTG AGCCCCTTGT 31995
.......... .......... .......... .......... .......... .......... 394
CTAATTCGCC AGCATTTCTA TGACTTCATT GTAGCTCTGG TCACCCTTTG AGCCCCGTGT 32055
.......... .......... .......... .......... .......... .......... 394
CTAATTCGCC AGCATTTCTA TGACTTCATT GTAGCTCTGG TCAATTTATG -CT-GC-CGG 32112
|||||| |||||||||| || || ||
.......... .......... .......... ....CTCTGG TCAATTTATG NCTGGCGGGG 420
CAACACTGTA CCAAT-ACCA TTTCTTAAGG CAATCG 32147
|||||| || || || |||| || || |||| |||| |
CAACACCGTT CCTATGACCA TTCCTCAAGG CAATTG 456
********************************************************************************
EST sequence 130 +strand (File: TAtuc02-12-22.19926+)
1 GCACAATGAT AGTCCTCCTG AAGATGGCGA TGAAGCGGCC GAATCATCTA TTTTCCCAAG
61 AGCAGAGTTC ATACCGGGCC TTGGTAGCAT CAACTCTTTC ACACATGATC CAAAGAGGGC
121 TGAGCTTATT TCAAAATTTT GGGCGGAGAG CACAGCTGAA AGTGATGCCA GTAAAGAGCG
181 GGACTTATAT GGACTTCCTG ACATCCAAGA ACCCAAAACA ATGCCACGTT CAACTGGAAC
241 AGTTAAGCAT CACAAGGGTG TAGAAGGGAC TGTGCTGCGC CATGATATCA CTGCATCACC
301 GGGTGTTGCT AGCACAATGA ACAAATTAAG CAGCAGCCCA AGCCGTAAAG CATTTTCGGT
361 TCAGGATAAG CTCTGGTCAA TCTATGCGGC CGGAAACACA GTGCCTATTC CATTTCTTAA
421 GGCTATTGAC ATTTCACCAC TAGCTCTAGT ATCGGATAGC GTAGCAGGCA ATGGCCCTGC
481 TGGTTCAAGT ACAACTGATG CCTTGGAGGC AGTCAGGGAG CTTTTCAGTG GCGATGGGCA
541 GGCAAAGAAA GGGCGCAAAG GGCAAAATGA GGCCCCTCTT CCTCCTGGTG TGCACGACAG
601 ATTGACGACA AGCCCTACAT TGATGAACCT GGCCCAGGCT CTCGCTTACC ATAAGACGTG
661 CTACGAGGAC ATGCCTCTGC AAGATTCACA GGCGACAGAG GAGCAGCAGA CGATACAGAA
721 CCTTTGTGAT ACGCTTCGGA CCATACTGAG GTTGTAGACG GATCCATGAG TGAAGGCTAC
781 AACTACATAC ATCTTTGGAA GGATTCGGCA CGCAATGGGG CTGCACGGAG GCAAGGGCTG
841 GCTGACATTG GCCTTAGTTT TTTCATGGCG GGCATTGCGA TTCGGCTCAG CCTGGGGTCA
901 TGTGGGATCA AAAGCATGGT GCAGACTGCA GGTGGACGCT GATGGAGCGT ATGACCAGTT
961 TTCTGAATTT ATAGACGCTG GGTGGGTGGA AGTTGGATGG AATTCTTTGT GTGGCGGAGA
1021 TGGGAAATTT TGCCTTGTGT TTATAGCCTC TAGGTCTTTT TCAGCGGTCG GTGCATGTAC
1081 AGATTGTGTA GCTAAGTTTN GGTTAGCAAT TTTGTGGCGC AAATGG
Predicted gene structure (within gDNA segment 31045 to 33530):
Exon 1 31412 31553 ( 142 n); cDNA 1 141 ( 141 n); score: 0.873
Intron 1 31554 31664 ( 111 n); Pd: 0.945 (s: 0.88), Pa: 0.856 (s: 0.86)
Exon 2 31665 31896 ( 232 n); cDNA 142 370 ( 229 n); score: 0.754
Intron 2 31897 32089 ( 193 n); Pd: 0.816 (s: 0.86), Pa: 0.165 (s: 0.86)
Exon 3 32090 32290 ( 201 n); cDNA 371 571 ( 201 n); score: 0.871
Intron 3 32291 32387 ( 97 n); Pd: 0.705 (s: 0.88), Pa: 0.968 (s: 0.82)
Exon 4 32388 32473 ( 86 n); cDNA 572 657 ( 86 n); score: 0.802
Intron 4 32474 32573 ( 100 n); Pd: 0.961 (s: 0.80), Pa: 0.998 (s: 0.90)
Exon 5 32574 32697 ( 124 n); cDNA 658 783 ( 126 n); score: 0.855
MATCH 21326110+ TAtuc02-12-22.19926+ 0.827 785 0.697 C
PGS_21326110+_TAtuc02-12-22.19926+ (31412 31553,31665 31896,32090 32290,32388 32473,32574 32697)
Alignment (genomic DNA sequence = upper lines):
GTACTATGAT AGTTCATACT GAAGATGGCG ACGAAGTGGC AGAATCACCC ATTTTCCCAA 31471
| || ||||| || || | || |||||||||| | |||| ||| |||||| | ||||||||||
GCACAATGAT AG-TCCTCCT GAAGATGGCG ATGAAGCGGC CGAATCATCT ATTTTCCCAA 59
GAACAGAGTT CATACCTGGC CTTGGTAGCA TCAATTCTTT CACACATGAT CCAAAGAGAG 31531
|| ||||||| |||||| ||| |||||||||| |||| ||||| |||||||||| |||||||| |
GAGCAGAGTT CATACCGGGC CTTGGTAGCA TCAACTCTTT CACACATGAT CCAAAGAGGG 119
CGGAACTTAT TTCAAGTTTT TGGTATGAGA AACATACATT TATCTTATTG TTTCTGTTTT 31591
| || ||||| ||||| ||| ||
CTGAGCTTAT TTCAAAATTT TG........ .......... .......... .......... 141
CAGTCATACA AAGCAGCTCA ATGTGAAGTT TTTATTTATC CCATCACAAA TCTTATGCAC 31651
.......... .......... .......... .......... .......... .......... 141
AGTTTCTTGA TAGGGCGGAG AACACAGGTG ATAGTGATGC CAATAAAGAT CGGGATTTAG 31711
||||||| | ||||| || | |||||||| || |||||| ||||| |||
.......... ...GGCGGAG AGCACAGCTG AAAGTGATGC CAGTAAAGAG CGGGACTTAT 188
ATGATCGTCC TGACATACAG GAATCAAAAG CAATCCCACC TTTAACTGGA ACAGTGAAGA 31771
||| | ||| |||||| || ||| | ||| |||| |||| || ||||||| ||||| |||
ATGGACTTCC TGACATCCAA GAACCCAAAA CAATGCCACG TTCAACTGGA ACAGTTAAGC 248
AGCATATTGG TGCAGAAGGG ACTATAAGAC GCCATGATAA TCAAGTTAAT TTGTCACCAG 31831
| || | || || ||||||| ||| | | |||||||| | || | | | ||||| |
ATCACAAGGG TGTAGAAGGG ACTGTGCTGC GCCATGAT-A TC-ACTGCA- ---TCACCGG 302
GATTTGCGAA CAC-A--ACT AAATTGAACA GCAGCCCGAG CCGCAAAGCG TTTTCGGTTC 31888
| |||| | ||| | | ||||| | || ||||||| || ||| ||||| ||||||||||
GTGTTGCTAG CACAATGAAC AAATTAAGCA GCAGCCCAAG CCGTAAAGCA TTTTCGGTTC 362
AGGATAAGGT ATGGTTCATG GTTTAGACAT CAGCTATTTG TTCCCTTGTC TGAGGCTAAG 31948
||||||||
AGGATAAG.. .......... .......... .......... .......... .......... 370
GTATTTTAGA TTTAGCTATT GCACACATTC CCCTTTGAGC CCCTTGTCTA ATTCGCCAGC 32008
.......... .......... .......... .......... .......... .......... 370
ATTTCTATGA CTTCATTGTA GCTCTGGTCA CCCTTTGAGC CCCGTGTCTA ATTCGCCAGC 32068
.......... .......... .......... .......... .......... .......... 370
ATTTCTATGA CTTCATTGTA GCTCTGGTCA ATTTATGCTG CCGGCAACAC TGTACCAATA 32128
||||||||| || ||||| | |||| ||||| || || ||
.......... .......... .CTCTGGTCA ATCTATGCGG CCGGAAACAC AGTGCCTATT 409
CCATTTCTTA AGGCAATCGA CATTTCACCA CTAGCTCTAG TATCAGAAAA TGAAGCAGGA 32188
|||||||||| |||| || || |||||||||| |||||||||| |||| || | | ||||||
CCATTTCTTA AGGCTATTGA CATTTCACCA CTAGCTCTAG TATCGGATAG CGTAGCAGGC 469
AATGGCCTGG CTGGGTCAAG TACAAATGAT GCCTTGGAGG CAGTTAGGGA GCTGTTCAGT 32248
||||||| | |||| ||||| ||||| |||| |||||||||| |||| ||||| ||| ||||||
AATGGCCCTG CTGGTTCAAG TACAACTGAT GCCTTGGAGG CAGTCAGGGA GCTTTTCAGT 529
GGTGATGGGC AGGCAAAGAA AGGACGGAAA GGGCAAAACG AAGTATGTGG TAGATTCTTT 32308
|| ||||||| |||||||||| ||| || ||| |||||||| | |
GGCGATGGGC AGGCAAAGAA AGGGCGCAAA GGGCAAAATG AG........ .......... 571
TCTTTAGCTC TTGCAGAGTG ACCTAACTTT TAAAGCTTGC AGAGGGATAC TTAGTCTAAT 32368
.......... .......... .......... .......... .......... .......... 571
ACTGCATTTG GTGCATTAGG TCCCTCTTCC TCCGGGTGTG CACCACAGGC TAATGACAAG 32428
| ||||||||| ||| |||||| ||| |||| | | ||||||
.......... .........G CCCCTCTTCC TCCTGGTGTG CACGACAGAT TGACGACAAG 612
CCCCACACTG ATGAACCTGG CTCAAGCGTT AGCGTATCAT AAAACGTGAG TTCATTTGAA 32488
||| ||| || |||||||||| | || || | || || ||| || ||
CCCTACATTG ATGAACCTGG CCCAGGCTCT CGCTTACCAT AAGAC..... .......... 657
CTACTCTATG CTGCTAGTGT TTTTATTTTC TCGCAATATG ACTGAAGTAA ATAGCTTTTC 32548
.......... .......... .......... .......... .......... .......... 657
TCCTTGTCTT CTGTGAATGT TTTAGGTGCT ACGAGGACAT GCCTCTACAA GATTCACAAG 32608
||||| |||||||||| |||||| ||| |||||||| |
.......... .......... .....GTGCT ACGAGGACAT GCCTCTGCAA GATTCACAGG 692
CGACGCAAGA GCAGCAGACG ATACAAAATC TTTGTGATAC ACTTCGAACC ATACTGAGGT 32668
|||| | || |||||||||| ||||| || | |||||||||| ||||| ||| ||||||||||
CGACAGAGGA GCAGCAGACG ATACAGAACC TTTGTGATAC GCTTCGGACC ATACTGAGGT 752
TGTAGA--TT TGCAAGAGTG AAGGTTACAA C 32697
|||||| | || ||||| |||| ||||| |
TGTAGACGGA TCCATGAGTG AAGGCTACAA C 783
********************************************************************************
EST sequence 150 +strand (File: HVtuc02-11-10.6739+)
1 TGAAGATGGC GATGAAGCGG TCGAATCATC TATTTTCCCA AGAGCAGAGT TATACCGGGC
61 CTTGGTAGCA TCAACTCTTT ACACATGATC CAAAGAGGGC TGAGCTTATT TCAAAATTTT
121 GGGCGGAGAA TACAGCTGAT AGCGATGCCA CTAAAGGGCG GGATTTAGAT GGACTTCCTG
181 ACACCCAAGA ACCCAAAGCA ATGCCACGTT CAATTGGAAC ATTTAAGCAT CACAAGGGTG
241 TAGAAGGGAC TGTGCTGCGC CATGATAACA CTGCATCACC GGGTGTTGCC AGCACAATGA
301 CCAAATTAAG CAGCAGCCCA AGCCGTAAAG CATTTTCAGT TCAGGATAAG CTCTGGTCAA
361 TCTATGCCGC TGGAAACACT GTGCCTATTC CATTCCTTAA GGCGATTGAC ATTTCACCGC
421 TAGCTCTAGT ATCGGACAGC GTAGCAGGCA ATGGCCCCGC TGGTTCAAGT ACAACTGATG
481 C
Predicted gene structure (within gDNA segment 31131 to 32717):
Exon 1 31431 31553 ( 123 n); cDNA 1 121 ( 121 n); score: 0.870
Intron 1 31554 31664 ( 111 n); Pd: 0.945 (s: 0.86), Pa: 0.856 (s: 0.88)
Exon 2 31665 31896 ( 232 n); cDNA 122 350 ( 229 n); score: 0.750
Intron 2 31897 32089 ( 193 n); Pd: 0.816 (s: 0.86), Pa: 0.165 (s: 0.84)
Exon 3 32090 32220 ( 131 n); cDNA 351 481 ( 131 n); score: 0.840
MATCH 21326110+ HVtuc02-11-10.6739+ 0.805 486 1.010 C
PGS_21326110+_HVtuc02-11-10.6739+ (31431 31553,31665 31896,32090 32220)
Alignment (genomic DNA sequence = upper lines):
TGAAGATGGC GACGAAGTGG CAGAATCACC CATTTTCCCA AGAACAGAGT TCATACCTGG 31490
|||||||||| || |||| || |||||| | ||||||||| ||| |||||| | ||||| ||
TGAAGATGGC GATGAAGCGG TCGAATCATC TATTTTCCCA AGAGCAGAGT T-ATACCGGG 59
CCTTGGTAGC ATCAATTCTT TCACACATGA TCCAAAGAGA GCGGAACTTA TTTCAAGTTT 31550
|||||||||| ||||| |||| | |||||||| ||||||||| || || |||| |||||| ||
CCTTGGTAGC ATCAACTCTT T-ACACATGA TCCAAAGAGG GCTGAGCTTA TTTCAAAATT 118
TTGGTATGAG AAACATACAT TTATCTTATT GTTTCTGTTT TCAGTCATAC AAAGCAGCTC 31610
|||
TTG....... .......... .......... .......... .......... .......... 121
AATGTGAAGT TTTTATTTAT CCCATCACAA ATCTTATGCA CAGTTTCTTG ATAGGGCGGA 31670
||||||
.......... .......... .......... .......... .......... ....GGCGGA 127
GAACACAGGT GATAGTGATG CCAATAAAGA TCGGGATTTA GATGATCGTC CTGACATACA 31730
||| |||| | ||||| |||| ||| ||||| ||||||||| |||| | || |||||| ||
GAATACAGCT GATAGCGATG CCACTAAAGG GCGGGATTTA GATGGACTTC CTGACACCCA 187
GGAATCAAAA GCAATCCCAC CTTTAACTGG AACAGTGAAG AAGCATATTG GTGCAGAAGG 31790
||| | ||| ||||| |||| || || ||| |||| | ||| | || | | ||| ||||||
AGAACCCAAA GCAATGCCAC GTTCAATTGG AACATTTAAG CATCACAAGG GTGTAGAAGG 247
GACTATAAGA CGCCATGATA ATCAAGTTAA TTTGTCACCA GGATTTGCGA ACAC-A--AC 31847
|||| | |||||||||| | | | | | ||||| || |||| | ||| | ||
GACTGTGCTG CGCCATGATA A-C-ACTGCA ----TCACCG GGTGTTGCCA GCACAATGAC 301
TAAATTGAAC AGCAGCCCGA GCCGCAAAGC GTTTTCGGTT CAGGATAAGG TATGGTTCAT 31907
||||| | | |||||||| | |||| ||||| ||||| ||| |||||||||
CAAATTAAGC AGCAGCCCAA GCCGTAAAGC ATTTTCAGTT CAGGATAAG. .......... 350
GGTTTAGACA TCAGCTATTT GTTCCCTTGT CTGAGGCTAA GGTATTTTAG ATTTAGCTAT 31967
.......... .......... .......... .......... .......... .......... 350
TGCACACATT CCCCTTTGAG CCCCTTGTCT AATTCGCCAG CATTTCTATG ACTTCATTGT 32027
.......... .......... .......... .......... .......... .......... 350
AGCTCTGGTC ACCCTTTGAG CCCCGTGTCT AATTCGCCAG CATTTCTATG ACTTCATTGT 32087
.......... .......... .......... .......... .......... .......... 350
AGCTCTGGTC AATTTATGCT GCCGGCAACA CTGTACCAAT ACCATTTCTT AAGGCAATCG 32147
|||||||| ||| ||||| || || |||| |||| || || ||||| ||| ||||| || |
..CTCTGGTC AATCTATGCC GCTGGAAACA CTGTGCCTAT TCCATTCCTT AAGGCGATTG 408
ACATTTCACC ACTAGCTCTA GTATCAGAAA ATGAAGCAGG AAATGGCCTG GCTGGGTCAA 32207
|||||||||| ||||||||| ||||| || | | |||||| ||||||| ||||| ||||
ACATTTCACC GCTAGCTCTA GTATCGGACA GCGTAGCAGG CAATGGCCCC GCTGGTTCAA 468
GTACAAATGA TGC 32220
|||||| ||| |||
GTACAACTGA TGC 481
********************************************************************************
EST sequence 86 +strand (File: SBtuc02-10-21.7623+)
1 GCACGAGGAC CTCGTCTCGC TTCTCCTCTC CCCGTGAAGA ATCGTGATGC GGAGAACAGC
61 CGCCGCTGCC CTCGTTTTCA TTCCCCTCCT CGCTGCGGCG GTGCAGACCT CCTCCCTGCC
121 CTTCATCGTC CTGCACGGGA TTGGGGACCA GTGCGCCAAC CATGGCGTCG CCAAGTTCAC
181 TAAACTTCTC GCCGGTTGGT CCGGCTCCGA CGGTCACTGC CTAGAGATCG GCAGAGGAAC
241 ATGGGACTCT TGGGTCATGC CTCTTCAACA ACAGGCTGAT ATCATCTGCA ACAAGGTCAA
301 GGAAATGAAA CAACTGAGAG ACGGCTACAA CATAGTTGGT CTGTCTCAGG GAAACTTGAT
361 TGGTCGAGCA GTAGTTGAGT ATTGTGATGA TGGACCGCCG GTCAAGAACT TCATCTCTCT
421 TGGAGGTCCT CATGCTGGTA CCGCTTCTGT GCCGCTTTGT GGTTCTGGTA TTTTGTGCAT
481 TCTTGTTGAC GCTCTGATCA AATTGGAGAT CTACTCAGAC TATGTGCAGG AACATCTTGC
541 ACCTAGTGGC TACCTCAAAA TCCCAACTGA TATGGCAGAT TATCTGAAGA GTTGCAGGTT
601 TCTTCCAAAA CTTAACAATG AGATTCCAGA AAAAAGAAAT GCCACCTACA AGGAAAGGTT
661 TAGCAGCTTA GAGAATTTGG TTCTGATCAT GTTTCAGGAT GATGCAGTCC TGATACCTCG
721 AGAAACAGCA TGGTTCGGTT ACTACCCTGA TGGAGCCTTT GATCCTGTTC TACCACCTCA
781 GAAGACGAAG CTGTATGAGG AAGACTGGAT CGGTTTGAAG ACACTGGATA AAGCAGGGCG
841 GGTGAAGTTT GTGTCTGTGG CGGGAGGTCA CCTCGGCATC TCCAAAAGTG ACATGAAGAA
901 GTACATTGTG CCTTACCTGA CAAGCAAAGC ATCGGTGAAG ACCCTCCTCC GGTGGAGCCT
961 TTCTGATTTG CTAGGTGGCA CTTGGCACGC TGCGCTGGGG CTGATGGAGG GTGATGGTGC
1021 TGTGCTTGAT TCGCCATCGT CGTGATTAAT CATATGATGT GATTTGATGG ACTTGGGGTC
1081 TGGTTTCCAA CAGTGGGTTG CTGTGAAGCT TGATTGTTAC GCTCTACTTG GTCGATTTAT
1141 GGCGTGGGCC TTGTTTAGTT CCGAAAAGTG AAAAGATTTC GGTACTGTAG CACTTTCGTT
1201 TGTCTGTGAC AAATATTATC CAATCATTGA CTAAGTAGGA TCAAAAGATT CGTCTTGTGA
1261 TTTACAGCT
Predicted gene structure (within gDNA segment 28464 to 35125):
Exon 1 31403 31435 ( 33 n); cDNA 1097 1126 ( 30 n); score: 0.545
Intron 1 31436 32089 ( 654 n); Pd: 0.000 (s: 0), Pa: 0.165 (s: 0)
Exon 2 32090 32111 ( 22 n); cDNA 1127 1147 ( 21 n); score: 0.727
Intron 2 32112 35017 (2906 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72)
Exon 3 35018 35125 ( 108 n); cDNA 1148 1255 ( 108 n); score: 0.796
MATCH 21326110+ SBtuc02-10-21.7623+ 0.796 163 0.128 C
PGS_21326110+_SBtuc02-10-21.7623+ (31403 31435,32090 32111,35018 35125)
Alignment (genomic DNA sequence = upper lines):
GTGATTTTGG TACTATGATA GTTCATACTG AAGATGGCGA CGAAGTGGCA GAATCACCCA 31462
|| | || || |||| ||| | || |
GTTGCTGTGA AGCT-TGATT GTT-ACGCTC TA-....... .......... .......... 1126
TTTTCCCAAG AACAGAGTTC ATACCTGGCC TTGGTAGCAT CAATTCTTTC ACACATGATC 31522
.......... .......... .......... .......... .......... .......... 1126
CAAAGAGAGC GGAACTTATT TCAAGTTTTT GGTATGAGAA ACATACATTT ATCTTATTGT 31582
.......... .......... .......... .......... .......... .......... 1126
TTCTGTTTTC AGTCATACAA AGCAGCTCAA TGTGAAGTTT TTATTTATCC CATCACAAAT 31642
.......... .......... .......... .......... .......... .......... 1126
CTTATGCACA GTTTCTTGAT AGGGCGGAGA ACACAGGTGA TAGTGATGCC AATAAAGATC 31702
.......... .......... .......... .......... .......... .......... 1126
GGGATTTAGA TGATCGTCCT GACATACAGG AATCAAAAGC AATCCCACCT TTAACTGGAA 31762
.......... .......... .......... .......... .......... .......... 1126
CAGTGAAGAA GCATATTGGT GCAGAAGGGA CTATAAGACG CCATGATAAT CAAGTTAATT 31822
.......... .......... .......... .......... .......... .......... 1126
TGTCACCAGG ATTTGCGAAC ACAACTAAAT TGAACAGCAG CCCGAGCCGC AAAGCGTTTT 31882
.......... .......... .......... .......... .......... .......... 1126
CGGTTCAGGA TAAGGTATGG TTCATGGTTT AGACATCAGC TATTTGTTCC CTTGTCTGAG 31942
.......... .......... .......... .......... .......... .......... 1126
GCTAAGGTAT TTTAGATTTA GCTATTGCAC ACATTCCCCT TTGAGCCCCT TGTCTAATTC 32002
.......... .......... .......... .......... .......... .......... 1126
GCCAGCATTT CTATGACTTC ATTGTAGCTC TGGTCACCCT TTGAGCCCCG TGTCTAATTC 32062
.......... .......... .......... .......... .......... .......... 1126
GCCAGCATTT CTATGACTTC ATTGTAGCTC TGGTCAATTT ATGCTGCCGG CAACACTGTA 32122
|| ||||| |||| ||| | |
.......... .......... .......CT- TGGTCGATTT ATGGCGTGG. .......... 1147
CCAATACCAT TTCTTAAGGC AATCGACATT TCACCACTAG CTCTAGTATC AGAAAATGAA 32182
.......... .......... .......... .......... .......... .......... 1147
GCAGGAAATG GCCTGGCTGG GTCAAGTACA AATGATGCCT TGGAGGCAGT TAGGGAGCTG 32242
.......... .......... .......... .......... .......... .......... 1147
TTCAGTGGTG ATGGGCAGGC AAAGAAAGGA CGGAAAGGGC AAAACGAAGT ATGTGGTAGA 32302
.......... .......... .......... .......... .......... .......... 1147
TTCTTTTCTT TAGCTCTTGC AGAGTGACCT AACTTTTAAA GCTTGCAGAG GGATACTTAG 32362
.......... .......... .......... .......... .......... .......... 1147
TCTAATACTG CATTTGGTGC ATTAGGTCCC TCTTCCTCCG GGTGTGCACC ACAGGCTAAT 32422
.......... .......... .......... .......... .......... .......... 1147
GACAAGCCCC ACACTGATGA ACCTGGCTCA AGCGTTAGCG TATCATAAAA CGTGAGTTCA 32482
.......... .......... .......... .......... .......... .......... 1147
TTTGAACTAC TCTATGCTGC TAGTGTTTTT ATTTTCTCGC AATATGACTG AAGTAAATAG 32542
.......... .......... .......... .......... .......... .......... 1147
CTTTTCTCCT TGTCTTCTGT GAATGTTTTA GGTGCTACGA GGACATGCCT CTACAAGATT 32602
.......... .......... .......... .......... .......... .......... 1147
CACAAGCGAC GCAAGAGCAG CAGACGATAC AAAATCTTTG TGATACACTT CGAACCATAC 32662
.......... .......... .......... .......... .......... .......... 1147
TGAGGTTGTA GATTTGCAAG AGTGAAGGTT ACAACCTTTG GAGTTCTGAA GCGCTGCATG 32722
.......... .......... .......... .......... .......... .......... 1147
GAGCCAAGGG TGAACATGGC TTCTCATGGT GGACACTGAA CCTGCTCGGG GTGGAGCCCC 32782
.......... .......... .......... .......... .......... .......... 1147
AAGGATCGAA GGAAGGCATG ACATCTGTGT ACCTTGGAGC AGGCCTAATG ACAACTGCGT 32842
.......... .......... .......... .......... .......... .......... 1147
TTGAGCTTGT GGACGGCTGG ACGCTTTGGT GACTGGAAGC TGATTGACAC AGGGATTTCT 32902
.......... .......... .......... .......... .......... .......... 1147
GTGGGGAGTG GAAATTTCTG TCTCTGTTAA TAGCCTCTAG GGGTTTCAGC GGTCGGTGTA 32962
.......... .......... .......... .......... .......... .......... 1147
TGTAGAGACT GCATCGACAT TTTGCTAATC AAATTTTGCG GCAGTAATGC CTATTGTAGT 33022
.......... .......... .......... .......... .......... .......... 1147
CTGGTTTTCA ATCGTTGACA ATGCAATTGT CTTCCTCCAA ATAAAGAGAA ATAGTTGAGC 33082
.......... .......... .......... .......... .......... .......... 1147
AGGAATAAAA AAAATGATTT AGGTTGGCTA TCCGAAATCA TGGGCGGCGT GATTTATGCT 33142
.......... .......... .......... .......... .......... .......... 1147
GCCATGTCCG CCTATTCCTT GTGCCTGGTC ATTATACGCC ATGCTTCGTG TTGTTACAAG 33202
.......... .......... .......... .......... .......... .......... 1147
TGCCAGTTCA TTAACCGCGC GTGTGAACGG CGTGCTTCTT GTTAATGGTT GCTTAACGCC 33262
.......... .......... .......... .......... .......... .......... 1147
TGTCCCAGTT GAGGTCGGGA ACATGGAAAT ATTCGGGCTG TTACTGACCA TCCATCTCGA 33322
.......... .......... .......... .......... .......... .......... 1147
GTTGACAGGT ACGCTATGTT CTGTGAACAG AGCGCGTTCC ACGTAAGCAA AATTTCTGCT 33382
.......... .......... .......... .......... .......... .......... 1147
TGCTGCTAGC CCAACCTGAT GTTTCAAACT TGGATCATGG GTACTATCTT GGTTTTTGTC 33442
.......... .......... .......... .......... .......... .......... 1147
CGGAAATAAC CAAATCCGGC GGGACAGCTG AAAGGTAGAC GTGACAACAT AGGTCGGATG 33502
.......... .......... .......... .......... .......... .......... 1147
CCGCATCCTA CCAAACCACC GTGGCAGCGA CTACTTACAC TTTGCCCCCA ATACTCAACG 33562
.......... .......... .......... .......... .......... .......... 1147
AAGATGCCAA TTGCCAATCA TCAAAATCTA GGGGAGAGGA GGGCCGGCCA GTGATGTGCA 33622
.......... .......... .......... .......... .......... .......... 1147
TTTGTAGTGG TGCTACCTAA TTAGGTATCC CTGAAGATTT GTATGGTTTG TTTGTGTCAG 33682
.......... .......... .......... .......... .......... .......... 1147
TACATGTGTC TTATTAGGTA TCCTCTTTAC AAAATTGCAT AGAAAGAGAA AGCATGAAAC 33742
.......... .......... .......... .......... .......... .......... 1147
ATAACATAGG AGTACTATTA TAAGTTAGTG CATACACCGA TGTACAATCT TGGTTCAGTT 33802
.......... .......... .......... .......... .......... .......... 1147
CCTTAGGTTC ATTTATTCTT TTCCTTTTCT TTGTTTGAAA CATCCAGATT AGTTCATTTT 33862
.......... .......... .......... .......... .......... .......... 1147
GATGTATTTT TCGATTGATC TATCTATCTA AAGAAAAATA AACTTGTATT GTCATGTGCC 33922
.......... .......... .......... .......... .......... .......... 1147
AGGTAATTGG ACTACACGTG TTCTATTTTC GAAGGGACAG CAAAAGATTT TGCTTTGCCA 33982
.......... .......... .......... .......... .......... .......... 1147
TAAATAATGT AAAGAGAATT TGACCTTGAT TATAAGGAAA AACATTTCCG AAAAAACATA 34042
.......... .......... .......... .......... .......... .......... 1147
CAATTAGGAT ATAAGCGCGA TACAACTTGA GTTAATAAAT CACGCACAAC TTCGTTGGTC 34102
.......... .......... .......... .......... .......... .......... 1147
CACTGACCAT GCAAAGTAGA AATACACAAC TTCGGGCAAA ATAACGCCGG TTTCGAGGTT 34162
.......... .......... .......... .......... .......... .......... 1147
TGATACATAG TCTTTTTAGG TGCCTCCGTG GTGATCCAGG AAGAGTTCAC CAACCTAGAG 34222
.......... .......... .......... .......... .......... .......... 1147
ATCTTAGAAG CAATGGGAGT CTAAAGATCA AATAACTAGA CCGATAATCT AATCACTCAG 34282
.......... .......... .......... .......... .......... .......... 1147
CACTTCAACC CGCCTAAGAG AGCAACACTA TAAGCGTGAT ATGTGTCTAT ATTCTTCATT 34342
.......... .......... .......... .......... .......... .......... 1147
TTGAATTTTG GCTTCAAGAA AGCTAAAAAA AACCCAAAAG CACCTGGGAG CCCGTGTCTA 34402
.......... .......... .......... .......... .......... .......... 1147
TCTCCGCCAA CATCAGGAAA ATGTTGACAT TTTGGATGGA ACTAAATACA CCCATAAAAA 34462
.......... .......... .......... .......... .......... .......... 1147
ATGGTATTTT GCATTTCATC TTTCAAAGTA CTTGGCATTT TGTATTTTGC ATTCCATGGA 34522
.......... .......... .......... .......... .......... .......... 1147
AAACTAAACA CACCCCTATT TTAGTATGCG TGCATATATA AATGTTTACG TCTGTGTTAC 34582
.......... .......... .......... .......... .......... .......... 1147
CACAAAAGTA AACATCAAAA TAGTTTCCTA TGTGACATGG GTCATCACAC CAATGATCAA 34642
.......... .......... .......... .......... .......... .......... 1147
GGCCTTGTTT AATTCAAAAA AATTTGCAAA ACAGGCACTG TAGCACTTTC GTTTGTATTT 34702
.......... .......... .......... .......... .......... .......... 1147
GACAAATATT GTCTAATCAT AGACTAACTA GGCTCAAAAG ATTCGTCTCG GCAATTCCGA 34762
.......... .......... .......... .......... .......... .......... 1147
CCAAACTATG CAATTAGTTT TTATTTTTGT CTATATTTAA TACTCCATGC ATATGTCTAA 34822
.......... .......... .......... .......... .......... .......... 1147
AGATTCGATG TGACGGAGAA TTTGAAAAAT TTTGCAAATT TTTTGGGAAC TAAACAAGGC 34882
.......... .......... .......... .......... .......... .......... 1147
CCAAGCTGCA AATCCCTAAT CACTCGTCAT TCTCATAAAT AAAGCTGAAA AAACTAAATC 34942
.......... .......... .......... .......... .......... .......... 1147
CAAGTGGGGC ACGCACTTGG ACTTTGGCCT CTTGGACTTG AGTGGGCGAC ACGCCGGATC 35002
.......... .......... .......... .......... .......... .......... 1147
GGCACCGGCA CCTAGGGCTT GTTTAGTTCC AAAAAATTTT GGGAAATGGA CATTGTAGCA 35062
| ||| |||||||||| |||| | || | | | |||||||
.......... .....GCCTT GTTTAGTTCC GAAAAGTGAA AAGATTTCGG TACTGTAGCA 1192
CTTTCGTTTG TATTTGACAA ATATTGTCCA ATTATGGACT AACTAGGCTC AAAAGATTCA 35122
|||||||||| | | |||||| ||||| |||| || || |||| || |||| || |||||||||
CTTTCGTTTG TCTGTGACAA ATATTATCCA ATCATTGACT AAGTAGGATC AAAAGATTCG 1252
TCT 35125
|||
TCT 1255
********************************************************************************
EST sequence 293 -strand (File: ZMtuc02-12-23.6281-)
1 CAGGAAATGG CCTGGCTGGG TCAAGTACAA ATGATGCTTT GGAGGCAGTT AGGGAGCTGT
61 TCAGTGGTGA TGGGCAGGCA AAGAAAGGAC GGAAAGGGCA AAACGAAGTC CCTCTTCCTC
121 CGGGTGTGCA TCACAGGCTG ACGACAAGCC CCACATTGAT GAACCTGGCC CAAGCTCTAG
181 CTTATCATAA AACGTGCTAT GAGGACATGC CGCTACAAGA TTCACAAGCG ACGCAGGAGC
241 AGCAAACGAT ACAAAATCTT TGTGACACAC TTCGCACAAT ACTGAGGTTG TAGATCTGCA
301 AGAGTGAAGG CTGCAACCTT TGGAGTTCCG AAGCCTGCAT GGAGCCAAGG GTGAACGTGG
361 CACTGATCCT GCTCGTGGTG GAGAACTGAG GATCGAAGGA ACGCATGACA TGTGCCTACC
421 GTGGAGCAGG CCTAATGGCT TCTGCGTTTT AGCCTGTGGA CGCTTTGGTC ACTGGAAGCT
481 GGGTTGACAC AGGAATCTCT ACGGAAGTGG AAATTTCTGT CCCTGTTAAT AGCCTCTTGG
541 AGTTTCACTA TGTAGAGACG GCATCAAATT TTGCTAATCA GATTTTGTGG CACTAACGCA
601 TATTGTAGCC TGGTTTTGTA TCGTTGTCAA GCATTTGTTG CTCCAAATAA AGAGAAATAG
661 TT
Predicted gene structure (within gDNA segment 31879 to 33378):
Exon 1 32184 32290 ( 107 n); cDNA 1 107 ( 107 n); score: 0.991
Intron 1 32291 32387 ( 97 n); Pd: 0.705 (s: 1.00), Pa: 0.968 (s: 0.92)
Exon 2 32388 32473 ( 86 n); cDNA 108 193 ( 86 n); score: 0.907
Intron 2 32474 32573 ( 100 n); Pd: 0.961 (s: 0.90), Pa: 0.998 (s: 0.94)
Exon 3 32574 33078 ( 505 n); cDNA 194 662 ( 469 n); score: 0.824
MATCH 21326110+ ZMtuc02-12-23.6281- 0.860 698 1.054 C
PGS_21326110+_ZMtuc02-12-23.6281- (32184 32290,32388 32473,32574 33078)
Alignment (genomic DNA sequence = upper lines):
CAGGAAATGG CCTGGCTGGG TCAAGTACAA ATGATGCCTT GGAGGCAGTT AGGGAGCTGT 32243
|||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||||||||||
CAGGAAATGG CCTGGCTGGG TCAAGTACAA ATGATGCTTT GGAGGCAGTT AGGGAGCTGT 60
TCAGTGGTGA TGGGCAGGCA AAGAAAGGAC GGAAAGGGCA AAACGAAGTA TGTGGTAGAT 32303
|||||||||| |||||||||| |||||||||| |||||||||| |||||||
TCAGTGGTGA TGGGCAGGCA AAGAAAGGAC GGAAAGGGCA AAACGAA... .......... 107
TCTTTTCTTT AGCTCTTGCA GAGTGACCTA ACTTTTAAAG CTTGCAGAGG GATACTTAGT 32363
.......... .......... .......... .......... .......... .......... 107
CTAATACTGC ATTTGGTGCA TTAGGTCCCT CTTCCTCCGG GTGTGCACCA CAGGCTAATG 32423
|||||| |||||||||| ||||||| || |||||| | |
.......... .......... ....GTCCCT CTTCCTCCGG GTGTGCATCA CAGGCTGACG 143
ACAAGCCCCA CACTGATGAA CCTGGCTCAA GCGTTAGCGT ATCATAAAAC GTGAGTTCAT 32483
|||||||||| || ||||||| |||||| ||| || |||| | ||||||||||
ACAAGCCCCA CATTGATGAA CCTGGCCCAA GCTCTAGCTT ATCATAAAAC .......... 193
TTGAACTACT CTATGCTGCT AGTGTTTTTA TTTTCTCGCA ATATGACTGA AGTAAATAGC 32543
.......... .......... .......... .......... .......... .......... 193
TTTTCTCCTT GTCTTCTGTG AATGTTTTAG GTGCTACGAG GACATGCCTC TACAAGATTC 32603
|||||| ||| |||||||| | ||||||||||
.......... .......... .......... GTGCTATGAG GACATGCCGC TACAAGATTC 223
ACAAGCGACG CAAGAGCAGC AGACGATACA AAATCTTTGT GATACACTTC GAACCATACT 32663
|||||||||| || ||||||| | |||||||| |||||||||| || ||||||| | || |||||
ACAAGCGACG CAGGAGCAGC AAACGATACA AAATCTTTGT GACACACTTC GCACAATACT 283
GAGGTTGTAG ATTTGCAAGA GTGAAGGTTA CAACCTTTGG AGTTCTGAAG CGCTGCATGG 32723
|||||||||| || ||||||| ||||||| | |||||||||| ||||| |||| | ||||||||
GAGGTTGTAG ATCTGCAAGA GTGAAGGCTG CAACCTTTGG AGTTCCGAAG C-CTGCATGG 342
AGCCAAGGGT GAACATGGCT TCTCATGGTG GACACTGAAC CTGCTCGGGG TGGAGCCCCA 32783
|||||||||| | | | | ||| | |||||| | ||||||| || ||||| |
AGCCAAGGGT G-A-A----- ---C---GTG G-CACTGATC CTGCTCGTGG TGGAGAACTG 388
AGGATCGAAG GAAGGCATGA CATCTGTGTA CCTTGGAGCA GGCCTAATGA CAACTGCGTT 32843
|||||||||| ||| |||||| ||| || || || ||||||| ||||||||| | |||||||
AGGATCGAAG GAACGCATGA CATGTGCCTA CCGTGGAGCA GGCCTAATGG CTTCTGCGTT 448
TGAGCTTGTG GACGGCTGGA CGCTTTGGTG ACTGGAAGCT -GATTGACAC AGGGATTTCT 32902
| ||| | | |||| ||||||||| |||||||||| | ||||||| ||| || |||
TTAGC----- --CTG-TGGA CGCTTTGGTC ACTGGAAGCT GGGTTGACAC AGGAATCTCT 500
GTGGGGAGTG GAAATTTCTG TCTCTGTTAA TAGCCTCTAG GGGTTTCAGC GGTCGGTGTA 32962
|| |||| |||||||||| || ||||||| |||||||| | | |||||| | ||
-ACGGAAGTG GAAATTTCTG TCCCTGTTAA TAGCCTCTTG GAGTTTCA-- ---C----TA 550
TGTAGAGACT GCATCGACAT TTTGCTAATC AAATTTTGCG GCAGTAATGC CTATTGTAGT 33022
||||||||| ||||| | || |||||||||| | |||||| | ||| ||| || ||||||||
TGTAGAGACG GCATC-AAAT TTTGCTAATC AGATTTTGTG GCACTAACGC ATATTGTAGC 609
CTGGTTTTCA ATCGTTGACA ATGCAATTGT CTTCCTCCAA ATAAAGAGAA ATAGTT 33078
|||||||| ||||||| || | || ||| | || |||||| |||||||||| ||||||
CTGGTTTTGT ATCGTTGTCA A-GC-ATT-T GTTGCTCCAA ATAAAGAGAA ATAGTT 662
********************************************************************************
EST sequence 297 -strand (File: 4609921-)
1 TGGCCTGGCT GGGTCAAGTA CAAATGATGC TTTGGAGGCA GTTAGGGAGC TGTTCAGTGG
61 TGATGGGCAG GCAAAGAAAG GACGGAAAGG GCAAAACGAA GTCCCTCTTC CTCCGGGTGT
121 GCATCACAGG CTGACGACAA GCCCCACATT GATGAACCTG GCCCAAGCTC TAGCTTATCA
181 TAAAACGTGC TATGAGGACA TGCCGCTACA AGATTCACAA GCGACGCAAG AGCAGCAAAC
241 GATACAAAAT CTTTGTGACA CACTTCGCAC AATACTGGGT TGACACAGGA ATCTCTACGG
301 AAGTGGAAAT TTCTGTCCCT GTTAATAGCC TCTTGGAGTT TCACTATGTA GAGACGGCAT
361 CAAATTTTGC TAATCAGATT TTGTGGCACT AACGCATATT GTAGCCTGGT TTTGTATCGT
421 TGTCAATGCA TTTGTTCTCC AAATAA
Predicted gene structure (within gDNA segment 31886 to 33651):
Exon 1 32191 32290 ( 100 n); cDNA 1 100 ( 100 n); score: 0.990
Intron 1 32291 32387 ( 97 n); Pd: 0.705 (s: 1.00), Pa: 0.968 (s: 0.92)
Exon 2 32388 32473 ( 86 n); cDNA 101 186 ( 86 n); score: 0.907
Intron 2 32474 32573 ( 100 n); Pd: 0.961 (s: 0.90), Pa: 0.998 (s: 0.96)
Exon 3 32574 32666 ( 93 n); cDNA 187 279 ( 93 n); score: 0.925
Intron 3 32667 32885 ( 219 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.86)
Exon 4 32886 33066 ( 181 n); cDNA 280 446 ( 167 n); score: 0.812
MATCH 21326110+ 4609921- 0.891 460 1.031 C
PGS_21326110+_4609921- (32191 32290,32388 32473,32574 32666,32886 33066)
Alignment (genomic DNA sequence = upper lines):
TGGCCTGGCT GGGTCAAGTA CAAATGATGC CTTGGAGGCA GTTAGGGAGC TGTTCAGTGG 32250
|||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||||||||
TGGCCTGGCT GGGTCAAGTA CAAATGATGC TTTGGAGGCA GTTAGGGAGC TGTTCAGTGG 60
TGATGGGCAG GCAAAGAAAG GACGGAAAGG GCAAAACGAA GTATGTGGTA GATTCTTTTC 32310
|||||||||| |||||||||| |||||||||| ||||||||||
TGATGGGCAG GCAAAGAAAG GACGGAAAGG GCAAAACGAA .......... .......... 100
TTTAGCTCTT GCAGAGTGAC CTAACTTTTA AAGCTTGCAG AGGGATACTT AGTCTAATAC 32370
.......... .......... .......... .......... .......... .......... 100
TGCATTTGGT GCATTAGGTC CCTCTTCCTC CGGGTGTGCA CCACAGGCTA ATGACAAGCC 32430
||| |||||||||| |||||||||| |||||||| | ||||||||
.......... .......GTC CCTCTTCCTC CGGGTGTGCA TCACAGGCTG ACGACAAGCC 143
CCACACTGAT GAACCTGGCT CAAGCGTTAG CGTATCATAA AACGTGAGTT CATTTGAACT 32490
||||| |||| ||||||||| ||||| ||| | |||||||| |||
CCACATTGAT GAACCTGGCC CAAGCTCTAG CTTATCATAA AAC....... .......... 186
ACTCTATGCT GCTAGTGTTT TTATTTTCTC GCAATATGAC TGAAGTAAAT AGCTTTTCTC 32550
.......... .......... .......... .......... .......... .......... 186
CTTGTCTTCT GTGAATGTTT TAGGTGCTAC GAGGACATGC CTCTACAAGA TTCACAAGCG 32610
|||||| |||||||||| | |||||||| ||||||||||
.......... .......... ...GTGCTAT GAGGACATGC CGCTACAAGA TTCACAAGCG 223
ACGCAAGAGC AGCAGACGAT ACAAAATCTT TGTGATACAC TTCGAACCAT ACTGAGGTTG 32670
|||||||||| |||| ||||| |||||||||| ||||| |||| |||| || || |||| |
ACGCAAGAGC AGCAAACGAT ACAAAATCTT TGTGACACAC TTCGCACAAT ACTGGG.... 279
TAGATTTGCA AGAGTGAAGG TTACAACCTT TGGAGTTCTG AAGCGCTGCA TGGAGCCAAG 32730
.......... .......... .......... .......... .......... .......... 279
GGTGAACATG GCTTCTCATG GTGGACACTG AACCTGCTCG GGGTGGAGCC CCAAGGATCG 32790
.......... .......... .......... .......... .......... .......... 279
AAGGAAGGCA TGACATCTGT GTACCTTGGA GCAGGCCTAA TGACAACTGC GTTTGAGCTT 32850
.......... .......... .......... .......... .......... .......... 279
GTGGACGGCT GGACGCTTTG GTGACTGGAA GCTGATTGAC ACAGGGATTT CTGTGGGGAG 32910
||||| ||||| || | || || ||
.......... .......... .......... .....TTGAC ACAGGAATCT CT-ACGGAAG 303
TGGAAATTTC TGTCTCTGTT AATAGCCTCT AGGGGTTTCA GCGGTCGGTG TATGTAGAGA 32970
|||||||||| |||| ||||| |||||||||| || |||||| | ||||||||||
TGGAAATTTC TGTCCCTGTT AATAGCCTCT TGGAGTTTCA -----C---- TATGTAGAGA 354
CTGCATCGAC ATTTTGCTAA TCAAATTTTG CGGCAGTAAT GCCTATTGTA GTCTGGTTTT 33030
| ||||| | |||||||||| ||| |||||| |||| ||| || ||||||| | ||||||||
CGGCATC-AA ATTTTGCTAA TCAGATTTTG TGGCACTAAC GCATATTGTA GCCTGGTTTT 413
CAATCGTTGA CAATGCAATT GTCTTCCTCC AAATAA 33066
||||||| |||||| ||| | || |||| ||||||
GTATCGTTGT CAATGC-ATT -TGTT-CTCC AAATAA 446
********************************************************************************
EST sequence 97 +strand (File: 13316473+)
1 GGGTGTGCAC CACAGGCTAA TGACAAGCCC CACACTGATG AACCTGGCTC AAGCGTTAGC
61 GTATCATAAA ACGTGCTACG AGGACATGCC TCTACAAGAT TCACAAGCGA CGCAAGAGCA
121 GCAGACGATA CAAAATCTTT GTGATACACT TCGAACCATA CTGAGGTTGT AGATTTGCAA
181 GAGTGAAGGT TACAACCTTT GGAGTTCTGA AGCGCTGCAT GGAGCCAAGG GTGAACATGG
241 CTTCTCATGG TGGACACTGA ACCTGCTCGG GGTGGAGCCC CAAGGATCGA AGGAAGGCAT
301 GACATCTGTG TACCTTGGAG CAGGCCTAAT GACAACTGCG TTTGAGCTTG TGGACGGCTG
361 GACGCTTTGG TGACTGGAAG CTGATTGACA CAGGGATTTC TGTGGGGAGT GGAAATTTCT
421 GTCTCTGTTA ATAGCCTCTA GGGGTTTCAG CGGTCGGTGT ATGTAGAGAC TGCA
Predicted gene structure (within gDNA segment 32102 to 33280):
Exon 1 32402 32473 ( 72 n); cDNA 1 72 ( 72 n); score: 1.000
Intron 1 32474 32573 ( 100 n); Pd: 0.961 (s: 1.00), Pa: 0.998 (s: 1.00)
Exon 2 32574 32975 ( 402 n); cDNA 73 474 ( 402 n); score: 1.000
MATCH 21326110+ 13316473+ 1.000 474 1.000 C
PGS_21326110+_13316473+ (32402 32473,32574 32975)
Alignment (genomic DNA sequence = upper lines):
GGGTGTGCAC CACAGGCTAA TGACAAGCCC CACACTGATG AACCTGGCTC AAGCGTTAGC 32461
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGGTGTGCAC CACAGGCTAA TGACAAGCCC CACACTGATG AACCTGGCTC AAGCGTTAGC 60
GTATCATAAA ACGTGAGTTC ATTTGAACTA CTCTATGCTG CTAGTGTTTT TATTTTCTCG 32521
|||||||||| ||
GTATCATAAA AC........ .......... .......... .......... .......... 72
CAATATGACT GAAGTAAATA GCTTTTCTCC TTGTCTTCTG TGAATGTTTT AGGTGCTACG 32581
||||||||
.......... .......... .......... .......... .......... ..GTGCTACG 80
AGGACATGCC TCTACAAGAT TCACAAGCGA CGCAAGAGCA GCAGACGATA CAAAATCTTT 32641
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGACATGCC TCTACAAGAT TCACAAGCGA CGCAAGAGCA GCAGACGATA CAAAATCTTT 140
GTGATACACT TCGAACCATA CTGAGGTTGT AGATTTGCAA GAGTGAAGGT TACAACCTTT 32701
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGATACACT TCGAACCATA CTGAGGTTGT AGATTTGCAA GAGTGAAGGT TACAACCTTT 200
GGAGTTCTGA AGCGCTGCAT GGAGCCAAGG GTGAACATGG CTTCTCATGG TGGACACTGA 32761
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGAGTTCTGA AGCGCTGCAT GGAGCCAAGG GTGAACATGG CTTCTCATGG TGGACACTGA 260
ACCTGCTCGG GGTGGAGCCC CAAGGATCGA AGGAAGGCAT GACATCTGTG TACCTTGGAG 32821
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACCTGCTCGG GGTGGAGCCC CAAGGATCGA AGGAAGGCAT GACATCTGTG TACCTTGGAG 320
CAGGCCTAAT GACAACTGCG TTTGAGCTTG TGGACGGCTG GACGCTTTGG TGACTGGAAG 32881
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAGGCCTAAT GACAACTGCG TTTGAGCTTG TGGACGGCTG GACGCTTTGG TGACTGGAAG 380
CTGATTGACA CAGGGATTTC TGTGGGGAGT GGAAATTTCT GTCTCTGTTA ATAGCCTCTA 32941
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGATTGACA CAGGGATTTC TGTGGGGAGT GGAAATTTCT GTCTCTGTTA ATAGCCTCTA 440
GGGGTTTCAG CGGTCGGTGT ATGTAGAGAC TGCA 32975
|||||||||| |||||||||| |||||||||| ||||
GGGGTTTCAG CGGTCGGTGT ATGTAGAGAC TGCA 474
********************************************************************************
EST sequence 10 +strand (File: 3766996+)
1 GATACGACCT TGGNGCATTT CGANCATCGA AATNTGCGCC GAGTAAAGGG NTGATTTTGG
61 CTTCTCCAAT TTNATGCCGA GATCGATCCG GCCAGTGTGT AGGGTAAGTC TGTAACCNAA
121 AGCAGGCACG GCATAGTGCG TACTGCAGAA CAATGCTGAC GGAGTTTGCC ATTAGCTTAT
181 AGATNCTGGG TGACCTTGAA GNTGGATAGG CGGAAGGAAT TCCTGTTTTG GAGATGGAAA
241 TTTTGTCTGA TGTTAATAGC AGGTATTTAT GTGGGCAGTG TATGTAGAGA TTGCATTCGA
301 CCTTTTGCTA ATCAAATTTT GCGGCTCAAA TGGTGACGTG TACTCAGGCT TTGTATTTTT
361 AACATATTTC ATTTGTTTTT CCCAAGAATA AAGAGAAATA GTATTAGTAC CAAAAAAAAA
421 AAAAAAAAAA AAAAAAAAAA AAAA
Predicted gene structure (within gDNA segment 31273 to 33592):
Exon 1 31403 31454 ( 52 n); cDNA 161 208 ( 48 n); score: 0.558
Intron 1 31455 31664 ( 210 n); Pd: 0.000 (s: 0.56), Pa: 0.856 (s: 0)
Exon 2 31665 31670 ( 6 n); cDNA 209 214 ( 6 n); score: 1.000
Intron 2 31671 32892 (1222 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68)
Exon 3 32893 33042 ( 150 n); cDNA 215 364 ( 150 n); score: 0.707
PPA cDNA 412 444
MATCH 21326110+ 3766996+ 0.668 208 0.468 C
PGS_21326110+_3766996+ (31403 31454,31665 31670,32893 33042)
Alignment (genomic DNA sequence = upper lines):
GTGATTTTGG TACTATGATA GTTCATACTG AAGATGGCGA CGAAGTGGCA GAATCACCCA 31462
| || |||| | || | | | || ||| | || | |||| | | |
G-GAGTTTGC CATTA-GCTT ATAGATNCTG -GG-TGACCT TGAAGNTGGA TA........ 208
TTTTCCCAAG AACAGAGTTC ATACCTGGCC TTGGTAGCAT CAATTCTTTC ACACATGATC 31522
.......... .......... .......... .......... .......... .......... 208
CAAAGAGAGC GGAACTTATT TCAAGTTTTT GGTATGAGAA ACATACATTT ATCTTATTGT 31582
.......... .......... .......... .......... .......... .......... 208
TTCTGTTTTC AGTCATACAA AGCAGCTCAA TGTGAAGTTT TTATTTATCC CATCACAAAT 31642
.......... .......... .......... .......... .......... .......... 208
CTTATGCACA GTTTCTTGAT AGGGCGGAGA ACACAGGTGA TAGTGATGCC AATAAAGATC 31702
||||||
.......... .......... ..GGCGGA.. .......... .......... .......... 214
GGGATTTAGA TGATCGTCCT GACATACAGG AATCAAAAGC AATCCCACCT TTAACTGGAA 31762
.......... .......... .......... .......... .......... .......... 214
CAGTGAAGAA GCATATTGGT GCAGAAGGGA CTATAAGACG CCATGATAAT CAAGTTAATT 31822
.......... .......... .......... .......... .......... .......... 214
TGTCACCAGG ATTTGCGAAC ACAACTAAAT TGAACAGCAG CCCGAGCCGC AAAGCGTTTT 31882
.......... .......... .......... .......... .......... .......... 214
CGGTTCAGGA TAAGGTATGG TTCATGGTTT AGACATCAGC TATTTGTTCC CTTGTCTGAG 31942
.......... .......... .......... .......... .......... .......... 214
GCTAAGGTAT TTTAGATTTA GCTATTGCAC ACATTCCCCT TTGAGCCCCT TGTCTAATTC 32002
.......... .......... .......... .......... .......... .......... 214
GCCAGCATTT CTATGACTTC ATTGTAGCTC TGGTCACCCT TTGAGCCCCG TGTCTAATTC 32062
.......... .......... .......... .......... .......... .......... 214
GCCAGCATTT CTATGACTTC ATTGTAGCTC TGGTCAATTT ATGCTGCCGG CAACACTGTA 32122
.......... .......... .......... .......... .......... .......... 214
CCAATACCAT TTCTTAAGGC AATCGACATT TCACCACTAG CTCTAGTATC AGAAAATGAA 32182
.......... .......... .......... .......... .......... .......... 214
GCAGGAAATG GCCTGGCTGG GTCAAGTACA AATGATGCCT TGGAGGCAGT TAGGGAGCTG 32242
.......... .......... .......... .......... .......... .......... 214
TTCAGTGGTG ATGGGCAGGC AAAGAAAGGA CGGAAAGGGC AAAACGAAGT ATGTGGTAGA 32302
.......... .......... .......... .......... .......... .......... 214
TTCTTTTCTT TAGCTCTTGC AGAGTGACCT AACTTTTAAA GCTTGCAGAG GGATACTTAG 32362
.......... .......... .......... .......... .......... .......... 214
TCTAATACTG CATTTGGTGC ATTAGGTCCC TCTTCCTCCG GGTGTGCACC ACAGGCTAAT 32422
.......... .......... .......... .......... .......... .......... 214
GACAAGCCCC ACACTGATGA ACCTGGCTCA AGCGTTAGCG TATCATAAAA CGTGAGTTCA 32482
.......... .......... .......... .......... .......... .......... 214
TTTGAACTAC TCTATGCTGC TAGTGTTTTT ATTTTCTCGC AATATGACTG AAGTAAATAG 32542
.......... .......... .......... .......... .......... .......... 214
CTTTTCTCCT TGTCTTCTGT GAATGTTTTA GGTGCTACGA GGACATGCCT CTACAAGATT 32602
.......... .......... .......... .......... .......... .......... 214
CACAAGCGAC GCAAGAGCAG CAGACGATAC AAAATCTTTG TGATACACTT CGAACCATAC 32662
.......... .......... .......... .......... .......... .......... 214
TGAGGTTGTA GATTTGCAAG AGTGAAGGTT ACAACCTTTG GAGTTCTGAA GCGCTGCATG 32722
.......... .......... .......... .......... .......... .......... 214
GAGCCAAGGG TGAACATGGC TTCTCATGGT GGACACTGAA CCTGCTCGGG GTGGAGCCCC 32782
.......... .......... .......... .......... .......... .......... 214
AAGGATCGAA GGAAGGCATG ACATCTGTGT ACCTTGGAGC AGGCCTAATG ACAACTGCGT 32842
.......... .......... .......... .......... .......... .......... 214
TTGAGCTTGT GGACGGCTGG ACGCTTTGGT GACTGGAAGC TGATTGACAC AGGGATTTCT 32902
||| ||| ||
.......... .......... .......... .......... .......... AGGAATTCCT 224
G-TGGGGAG- TGGAAATTTC TGTCT-CTGT TAATAGCCTC TAGGGGTTTC AGCGGTCGGT 32959
| | |||| ||||||||| ||||| ||| |||||| | ||| ||| | || | ||
GTTTTGGAGA TGGAAATTT- TGTCTGATGT TAATAG---C -AGGTATTTA TGTGGGCAGT 279
GTATGTAGAG ACTGCA-TCG ACATTTTGCT AATCAAATTT TGCGGCAGTA ATGCCTA-TT 33017
|||||||||| | |||| ||| || ||||||| |||||||||| |||||| | ||| | |
GTATGTAGAG ATTGCATTCG ACCTTTTGCT AATCAAATTT TGCGGCTCAA ATGGTGACGT 339
GTAGTCTGGT TTTCAATCGT TGACA 33042
||| || || ||| || | | |||
GTACTCAGGC TTTGTATTTT TAACA 364
********************************************************************************
EST sequence 226 -strand (File: SBtuc02-10-21.1859-)
1 TCCTNTGTTG CTCACTGAAG TTGAGAACTT GTTCAAGTCT ATTGCTGTGT GCATATATCT
61 GAACACGGAT CATCAACCAG AACCAAATTA AATTGCACCA ATGTCTACAA CCAAAATCCC
121 TATTATTAGC TACGATGATA AGAACACGGA ACTGCAGTCC ACAATATTTA GAAACTACTG
181 ATTACTATAG GTAAAAGCAG AAAAATAGAA ATAAAAGAAA TAGAACATTA GCAAACTATA
241 TATGCAATAA TATAAGTTTT GCACTGAACT GTTAATGTAT CCAACACTAA GGAGCTCAGT
301 CACCTGGTTA AAGAACATGT CCTAGTCAGT CCTCAGTGGA CTGCGTGGTA CAGAAACAAA
361 AAATATGTAG GTCTGAAATC TTGATTCCAC AATTTGCAAA TTTGACATGA ACAAGTGATG
421 AATAAAAATA AATAAATAAA TTGCGAATAA AAAGATGGTG TTTTTTAGGC TTTGTTTAGT
481 TCTCAAAAAA ATTTGCACAA TTTTTTAGAT TCTCCGTCAC ATTGAATCTT GCGGCAGATG
541 CATGGAGTAT TAAATATAGA TAAAAGAAAT AACTAATTGC ACAGTTTATC TATAGTTTGC
601 GAGACGAATC T
Predicted gene structure (within gDNA segment 31941 to 36172):
Exon 1 32674 32685 ( 12 n); cDNA 392 402 ( 11 n); score: 0.833
Intron 1 32686 33956 (1271 n); Pd: 0.000 (s: 0), Pa: 0.412 (s: 0)
Exon 2 33957 33990 ( 34 n); cDNA 403 436 ( 34 n); score: 0.559
Intron 2 33991 34444 ( 454 n); Pd: 0.160 (s: 0), Pa: 0.000 (s: 0)
Exon 3 34445 34472 ( 28 n); cDNA 437 464 ( 28 n); score: 0.714
Intron 3 34473 35635 (1163 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.62)
Exon 4 35636 35780 ( 145 n); cDNA 465 611 ( 147 n); score: 0.752
MATCH 21326110+ SBtuc02-10-21.1859- 0.752 219 0.358 C
PGS_21326110+_SBtuc02-10-21.1859- (32674 32685,33957 33990,34445 34472,35636 35780)
Alignment (genomic DNA sequence = upper lines):
ATTTGCAAGA GTGAAGGTTA CAACCTTTGG AGTTCTGAAG CGCTGCATGG AGCCAAGGGT 32733
|||||||| | |
ATTTGCAA-A TT........ .......... .......... .......... .......... 402
GAACATGGCT TCTCATGGTG GACACTGAAC CTGCTCGGGG TGGAGCCCCA AGGATCGAAG 32793
.......... .......... .......... .......... .......... .......... 402
GAAGGCATGA CATCTGTGTA CCTTGGAGCA GGCCTAATGA CAACTGCGTT TGAGCTTGTG 32853
.......... .......... .......... .......... .......... .......... 402
GACGGCTGGA CGCTTTGGTG ACTGGAAGCT GATTGACACA GGGATTTCTG TGGGGAGTGG 32913
.......... .......... .......... .......... .......... .......... 402
AAATTTCTGT CTCTGTTAAT AGCCTCTAGG GGTTTCAGCG GTCGGTGTAT GTAGAGACTG 32973
.......... .......... .......... .......... .......... .......... 402
CATCGACATT TTGCTAATCA AATTTTGCGG CAGTAATGCC TATTGTAGTC TGGTTTTCAA 33033
.......... .......... .......... .......... .......... .......... 402
TCGTTGACAA TGCAATTGTC TTCCTCCAAA TAAAGAGAAA TAGTTGAGCA GGAATAAAAA 33093
.......... .......... .......... .......... .......... .......... 402
AAATGATTTA GGTTGGCTAT CCGAAATCAT GGGCGGCGTG ATTTATGCTG CCATGTCCGC 33153
.......... .......... .......... .......... .......... .......... 402
CTATTCCTTG TGCCTGGTCA TTATACGCCA TGCTTCGTGT TGTTACAAGT GCCAGTTCAT 33213
.......... .......... .......... .......... .......... .......... 402
TAACCGCGCG TGTGAACGGC GTGCTTCTTG TTAATGGTTG CTTAACGCCT GTCCCAGTTG 33273
.......... .......... .......... .......... .......... .......... 402
AGGTCGGGAA CATGGAAATA TTCGGGCTGT TACTGACCAT CCATCTCGAG TTGACAGGTA 33333
.......... .......... .......... .......... .......... .......... 402
CGCTATGTTC TGTGAACAGA GCGCGTTCCA CGTAAGCAAA ATTTCTGCTT GCTGCTAGCC 33393
.......... .......... .......... .......... .......... .......... 402
CAACCTGATG TTTCAAACTT GGATCATGGG TACTATCTTG GTTTTTGTCC GGAAATAACC 33453
.......... .......... .......... .......... .......... .......... 402
AAATCCGGCG GGACAGCTGA AAGGTAGACG TGACAACATA GGTCGGATGC CGCATCCTAC 33513
.......... .......... .......... .......... .......... .......... 402
CAAACCACCG TGGCAGCGAC TACTTACACT TTGCCCCCAA TACTCAACGA AGATGCCAAT 33573
.......... .......... .......... .......... .......... .......... 402
TGCCAATCAT CAAAATCTAG GGGAGAGGAG GGCCGGCCAG TGATGTGCAT TTGTAGTGGT 33633
.......... .......... .......... .......... .......... .......... 402
GCTACCTAAT TAGGTATCCC TGAAGATTTG TATGGTTTGT TTGTGTCAGT ACATGTGTCT 33693
.......... .......... .......... .......... .......... .......... 402
TATTAGGTAT CCTCTTTACA AAATTGCATA GAAAGAGAAA GCATGAAACA TAACATAGGA 33753
.......... .......... .......... .......... .......... .......... 402
GTACTATTAT AAGTTAGTGC ATACACCGAT GTACAATCTT GGTTCAGTTC CTTAGGTTCA 33813
.......... .......... .......... .......... .......... .......... 402
TTTATTCTTT TCCTTTTCTT TGTTTGAAAC ATCCAGATTA GTTCATTTTG ATGTATTTTT 33873
.......... .......... .......... .......... .......... .......... 402
CGATTGATCT ATCTATCTAA AGAAAAATAA ACTTGTATTG TCATGTGCCA GGTAATTGGA 33933
.......... .......... .......... .......... .......... .......... 402
CTACACGTGT TCTATTTTCG AAGGGACAGC AAAAGATTTT GCTTTGCCAT AAATAATGTA 33993
|||| || | | | | | || ||||||
.......... .......... ...TGACATG AACAAGTGAT GAATAAAAAT AAATAAA... 436
AAGAGAATTT GACCTTGATT ATAAGGAAAA ACATTTCCGA AAAAACATAC AATTAGGATA 34053
.......... .......... .......... .......... .......... .......... 436
TAAGCGCGAT ACAACTTGAG TTAATAAATC ACGCACAACT TCGTTGGTCC ACTGACCATG 34113
.......... .......... .......... .......... .......... .......... 436
CAAAGTAGAA ATACACAACT TCGGGCAAAA TAACGCCGGT TTCGAGGTTT GATACATAGT 34173
.......... .......... .......... .......... .......... .......... 436
CTTTTTAGGT GCCTCCGTGG TGATCCAGGA AGAGTTCACC AACCTAGAGA TCTTAGAAGC 34233
.......... .......... .......... .......... .......... .......... 436
AATGGGAGTC TAAAGATCAA ATAACTAGAC CGATAATCTA ATCACTCAGC ACTTCAACCC 34293
.......... .......... .......... .......... .......... .......... 436
GCCTAAGAGA GCAACACTAT AAGCGTGATA TGTGTCTATA TTCTTCATTT TGAATTTTGG 34353
.......... .......... .......... .......... .......... .......... 436
CTTCAAGAAA GCTAAAAAAA ACCCAAAAGC ACCTGGGAGC CCGTGTCTAT CTCCGCCAAC 34413
.......... .......... .......... .......... .......... .......... 436
ATCAGGAAAA TGTTGACATT TTGGATGGAA CTAAATACAC CCATAAAAA- ATGGTATTTT 34472
||||| | ||||||| ||||| ||||
.......... .......... .......... .TAAAT-TGC GAATAAAAAG ATGGTGTTTT 464
GCATTTCATC TTTCAAAGTA CTTGGCATTT TGTATTTTGC ATTCCATGGA AAACTAAACA 34532
.......... .......... .......... .......... .......... .......... 464
CACCCCTATT TTAGTATGCG TGCATATATA AATGTTTACG TCTGTGTTAC CACAAAAGTA 34592
.......... .......... .......... .......... .......... .......... 464
AACATCAAAA TAGTTTCCTA TGTGACATGG GTCATCACAC CAATGATCAA GGCCTTGTTT 34652
.......... .......... .......... .......... .......... .......... 464
AATTCAAAAA AATTTGCAAA ACAGGCACTG TAGCACTTTC GTTTGTATTT GACAAATATT 34712
.......... .......... .......... .......... .......... .......... 464
GTCTAATCAT AGACTAACTA GGCTCAAAAG ATTCGTCTCG GCAATTCCGA CCAAACTATG 34772
.......... .......... .......... .......... .......... .......... 464
CAATTAGTTT TTATTTTTGT CTATATTTAA TACTCCATGC ATATGTCTAA AGATTCGATG 34832
.......... .......... .......... .......... .......... .......... 464
TGACGGAGAA TTTGAAAAAT TTTGCAAATT TTTTGGGAAC TAAACAAGGC CCAAGCTGCA 34892
.......... .......... .......... .......... .......... .......... 464
AATCCCTAAT CACTCGTCAT TCTCATAAAT AAAGCTGAAA AAACTAAATC CAAGTGGGGC 34952
.......... .......... .......... .......... .......... .......... 464
ACGCACTTGG ACTTTGGCCT CTTGGACTTG AGTGGGCGAC ACGCCGGATC GGCACCGGCA 35012
.......... .......... .......... .......... .......... .......... 464
CCTAGGGCTT GTTTAGTTCC AAAAAATTTT GGGAAATGGA CATTGTAGCA CTTTCGTTTG 35072
.......... .......... .......... .......... .......... .......... 464
TATTTGACAA ATATTGTCCA ATTATGGACT AACTAGGCTC AAAAGATTCA TCTCGTCAAT 35132
.......... .......... .......... .......... .......... .......... 464
TCCGACCAAA CTGTGTAATT AGTTTTTATT TTCGTCTATA TTTAACACTC CATGCATGCG 35192
.......... .......... .......... .......... .......... .......... 464
TCTAAAGATT CGATGTGACG GAGAATATGA AAAATTTTAC AAAATTTTTT CGGAAGTAAA 35252
.......... .......... .......... .......... .......... .......... 464
CAAGGCCCTA GTACTCGACT GCTACCGGGG ACGACGGTAC GGTGGAAGCA GGCGCCTGTC 35312
.......... .......... .......... .......... .......... .......... 464
GAGCATCTCC AGTGCTAAAT CGAACAAAAC TGACAAGGTT CGGTTGAGTG CAGTACGGTT 35372
.......... .......... .......... .......... .......... .......... 464
TGAGAGAGCT GCAGTGTGGC GTCGGTGTTT GCTCCAAACA AACATTAAAC AAATTGGAAG 35432
.......... .......... .......... .......... .......... .......... 464
TGACCCTGCC TAGGAGGTTT CACACACAAC ATTATCAATG GCTTGTCCTG TATAAAGATT 35492
.......... .......... .......... .......... .......... .......... 464
TTTTTATTGA AACAGTCACG GCACGGTTTG GTGCTTGAGT TTGGTTCGCT TTTAGTTCTG 35552
.......... .......... .......... .......... .......... .......... 464
ACAACGAGCA GCCGAACCGT CTAGTGTTCT CGGTTCGATT TGCTTCTCCC TCGGTTCGAT 35612
.......... .......... .......... .......... .......... .......... 464
TCTGCGATAC ACTAGAGGTG CCCTTAGGCG TTGTTTAGAT -GCATCAAAA ACCCCAAACT 35671
|||||| |||||||| | || |||| || | |
.......... .......... ...TTAGGCT TTGTTTAGTT CTCAAAAAAA TTTGCACAAT 501
TTACAAGATT CT-CATCACA TCGAATCTTG CAACACATGC ATAGAACATT AAATATAGAA 35730
|| ||||| || | ||||| | |||||||| | || |||| || || ||| |||||||||
TTTTTAGATT CTCCGTCACA TTGAATCTTG CGGCAGATGC ATGGAGTATT AAATATAGAT 561
AAAAAAGATA ACTAATTGCA CAGTTTACCT GTAAATCACG AGACAAATCT 35780
|||| | ||| |||||||||| ||||||| || || | || |||| |||||
AAAAGAAATA ACTAATTGCA CAGTTTATCT ATAGTTTGCG AGACGAATCT 611
********************************************************************************
EST sequence 51 +strand (File: 6674746+)
1 TAATTACCAC TTGATGATGG ACAAGTTTCA TATGTGGAAG ACGGTTGTGC ACAGGTTTTT
61 TTTTCTTTTG TTTGCAGCTG AACTCATTTC GTGTACTAAG TGCACCATAC GTTGACTGCT
121 GATGTTAATT CTCCTTAGGA ATGGAAAGGA GCAAAAATCG CAGGACAGCC TTAGAAATTA
181 GAATAGCCTA GGCAGGATCC GTTGCAGCAA GTTTGATGAC GTGCGTACCA ATGGGTTCCT
241 TTTTTTTAAT GACGTGCGTA CGAGCAACAC CAAGAGGTCT GTTTGATTAT AGGGTTTGTT
301 TGGTTGGTGA CCAAAAGCTG CCATGCTAAG GCCTTGTTTA GTTTGCAAAA ATTTTCAAGA
361 TTCTCTGTCA CATCGAATCT TTGGTTGCAT GTATGGAGCA TTAAATATAG ATAAAAAT
Predicted gene structure (within gDNA segment 34134 to 36511):
Exon 1 34633 34667 ( 35 n); cDNA 321 354 ( 34 n); score: 0.800
Intron 1 34668 35907 (1240 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80)
Exon 2 35908 35972 ( 65 n); cDNA 355 418 ( 64 n); score: 0.815
MATCH 21326110+ 6674746+ 0.815 100 0.239 C
PGS_21326110+_6674746+ (34633 34667,35908 35972)
Alignment (genomic DNA sequence = upper lines):
CAATGATCAA GGCCTTGTTT AATTCAAAAA AATTTGCAAA ACAGGCACTG TAGCACTTTC 34692
| ||| | || |||||||||| | || ||| |||||
CCATGCT-AA GGCCTTGTTT AGTTTGCAAA AATTT..... .......... .......... 354
GTTTGTATTT GACAAATATT GTCTAATCAT AGACTAACTA GGCTCAAAAG ATTCGTCTCG 34752
.......... .......... .......... .......... .......... .......... 354
GCAATTCCGA CCAAACTATG CAATTAGTTT TTATTTTTGT CTATATTTAA TACTCCATGC 34812
.......... .......... .......... .......... .......... .......... 354
ATATGTCTAA AGATTCGATG TGACGGAGAA TTTGAAAAAT TTTGCAAATT TTTTGGGAAC 34872
.......... .......... .......... .......... .......... .......... 354
TAAACAAGGC CCAAGCTGCA AATCCCTAAT CACTCGTCAT TCTCATAAAT AAAGCTGAAA 34932
.......... .......... .......... .......... .......... .......... 354
AAACTAAATC CAAGTGGGGC ACGCACTTGG ACTTTGGCCT CTTGGACTTG AGTGGGCGAC 34992
.......... .......... .......... .......... .......... .......... 354
ACGCCGGATC GGCACCGGCA CCTAGGGCTT GTTTAGTTCC AAAAAATTTT GGGAAATGGA 35052
.......... .......... .......... .......... .......... .......... 354
CATTGTAGCA CTTTCGTTTG TATTTGACAA ATATTGTCCA ATTATGGACT AACTAGGCTC 35112
.......... .......... .......... .......... .......... .......... 354
AAAAGATTCA TCTCGTCAAT TCCGACCAAA CTGTGTAATT AGTTTTTATT TTCGTCTATA 35172
.......... .......... .......... .......... .......... .......... 354
TTTAACACTC CATGCATGCG TCTAAAGATT CGATGTGACG GAGAATATGA AAAATTTTAC 35232
.......... .......... .......... .......... .......... .......... 354
AAAATTTTTT CGGAAGTAAA CAAGGCCCTA GTACTCGACT GCTACCGGGG ACGACGGTAC 35292
.......... .......... .......... .......... .......... .......... 354
GGTGGAAGCA GGCGCCTGTC GAGCATCTCC AGTGCTAAAT CGAACAAAAC TGACAAGGTT 35352
.......... .......... .......... .......... .......... .......... 354
CGGTTGAGTG CAGTACGGTT TGAGAGAGCT GCAGTGTGGC GTCGGTGTTT GCTCCAAACA 35412
.......... .......... .......... .......... .......... .......... 354
AACATTAAAC AAATTGGAAG TGACCCTGCC TAGGAGGTTT CACACACAAC ATTATCAATG 35472
.......... .......... .......... .......... .......... .......... 354
GCTTGTCCTG TATAAAGATT TTTTTATTGA AACAGTCACG GCACGGTTTG GTGCTTGAGT 35532
.......... .......... .......... .......... .......... .......... 354
TTGGTTCGCT TTTAGTTCTG ACAACGAGCA GCCGAACCGT CTAGTGTTCT CGGTTCGATT 35592
.......... .......... .......... .......... .......... .......... 354
TGCTTCTCCC TCGGTTCGAT TCTGCGATAC ACTAGAGGTG CCCTTAGGCG TTGTTTAGAT 35652
.......... .......... .......... .......... .......... .......... 354
GCATCAAAAA CCCCAAACTT TACAAGATTC TCATCACATC GAATCTTGCA ACACATGCAT 35712
.......... .......... .......... .......... .......... .......... 354
AGAACATTAA ATATAGAAAA AAAAGATAAC TAATTGCACA GTTTACCTGT AAATCACGAG 35772
.......... .......... .......... .......... .......... .......... 354
ACAAATCTTT TAAGCCTAGT TGCTCTATGA AAGAACAATG TTTGTCAAAT AAAAACAAAA 35832
.......... .......... .......... .......... .......... .......... 354
ATGCTGCAGC ATCAAAATCC AAAAAATTTT TGGATCTAAA CAAGGCCTAA GTGCACCTTA 35892
.......... .......... .......... .......... .......... .......... 354
AAAATTAAAA AAATTTCAAG ATTTTCTGTC ACATCGAATC TTGCGATATA TGCATGATTG 35952
||||| ||| |||||| |||||||||| || | | | || ||| |
.......... .....TCAAG ATTCTCTGTC ACATCGAATC TTTGGTTGCA TGTATG-GAG 398
CATTAAATAT AGTCAAAAAT 35972
|||||||||| || ||||||
CATTAAATAT AGATAAAAAT 418
********************************************************************************
EST sequence 41 +strand (File: SBtuc02-10-21.2146+)
1 GGCCACGCGA CGCCGCTGGC GGGCGTGAGC ATCGCGGCGG TGCTCACGTT CGTGGCGTCC
61 TTCTCCGTCG GCATGGGCCC CATCGCGTGG GTGTACAGCT CGGAGATCTT CCCGCTGCGG
121 CTCCGCGCGC AGGGCTGCGC GCTCGGCACG GCGATGAACC GGATCATGAG CGGCGCCATC
181 ACCATGTCCT TCATCTCGCT CTACAAGGCC ATCACCTTGG CCGGGAGCTT CTACTTGTAT
241 GCAGGTATCG CTGCTGCCGG GTGGCTGTTC ATGTTCTTCT TCCTGCCGGA GACGAGGGGC
301 AGGAGCCTGG AGGACACCGA GAAGCTCTTC GGCGGTGGGG ACGACGGCGA GGACAACAAG
361 GAAGATGGAC ACGATGTGCA CAAGAAGTCC ACTGAGTTGA GTAGCAAGCA AACAGTGACC
421 TGATCTGCAC GTGCTAGTAC GTACGCTAGT CAATAACACG AACGGATGTG GTCGGATTTT
481 TCAATTCGCA GCGGAACGCG CGGCAAAGCT GCGCGAACTG AACCCGTGTT CAACATGACA
541 TGTCCTTTGT AGAAATCATG GTCACAGCTC AAGGGGAGTA GCGTAAATAC TAGGCAAGGT
601 TATGTTTCGC ACTAGGGTGG GTCTCCTCCT CTTTGGCAAA TGCTTTGTTT GTTGCTAAGT
661 GTGGGTTGGC CCACTTGCAG TTTAGCGAAT GATTTGTTGT CATGTGCTTT CGTAGTGGAT
721 TATTTGCCGT TACTGTGATG TGTTTCGTCT TAGGCCTTGT TTAGTTCCGA AAAGTGAAAA
781 GTTTTCGGTG CTGTAGCACT TTCGTTTGTT TGTGATAAAT ATTATCCAAT CATGGACTAA
841 CTAGGATCAA AAGATTCGTC TCGTGATTTA CAACTAAACC GTGTAATTAG TTTTTGTTTT
901 CGTCCATATT TACTGTTTCA TGCATGTGCC ACAAGATTCG ATATGACGGG GAATCTTGAA
961 AACTTTTTTG TTTTCAGGGT GAACTAAACA AGGCCATAAT CATGCATCTG TAATATGATT
1021 TTGTCTAGAT TTTACTTGCT TGCATAGAGA AATAAAGGAC GCCCAAAATC TATTGATCAC
1081 AAACAGCAAG CTTGCTATTC ATGGAAACTG CGCATAGTCC CTAAGCAATT GAAATGGCTA
1141 TGCTGGTTGG ACAGAAATCA AGATAGCCAG ACTAAACTAT TGTAACAGGT AAATTATGCA
1201 TTTGAGATCT AGGCCAACCA ATATCTCATT GGCAAGATAG CAGAAGTAAC CTCTCTACTT
1261 GCAGATCTAC ATGCAGCTAG GAATACAACT ACTATAACAG ATTACCTAAA GGTATAACAT
1321 CATAAGGGTT ATCTCCTCTT GGTAGGAAAC CATAGAATGT AACCCTCGTG C
Predicted gene structure (within gDNA segment 30945 to 38044):
Exon 1 31403 31411 ( 9 n); cDNA 735 742 ( 8 n); score: 0.778
Intron 1 31412 31653 ( 242 n); Pd: 0.000 (s: 0), Pa: 0.986 (s: 0)
Exon 2 31654 31664 ( 11 n); cDNA 743 753 ( 11 n); score: 0.727
Intron 2 31665 34643 (2979 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.65)
Exon 3 34644 34880 ( 237 n); cDNA 754 992 ( 239 n); score: 0.751
Intron 3 34881 35108 ( 228 n); Pd: 0.000 (s: 0.69), Pa: 0.485 (s: 0)
Exon 4 35109 35126 ( 18 n); cDNA 993 1010 ( 18 n); score: 0.611
Intron 4 35127 35507 ( 381 n); Pd: 0.317 (s: 0), Pa: 0.913 (s: 0)
Exon 5 35508 35546 ( 39 n); cDNA 1011 1044 ( 34 n); score: 0.590
Intron 5 35547 35647 ( 101 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.59)
Exon 6 35648 35709 ( 62 n); cDNA 1045 1103 ( 59 n); score: 0.629
Intron 6 35710 37694 (1985 n); Pd: 0.000 (s: 0.63), Pa: 0.876 (s: 0)
Exon 7 37695 37706 ( 12 n); cDNA 1104 1114 ( 11 n); score: 0.667
Intron 7 37707 37797 ( 91 n); Pd: 0.000 (s: 0), Pa: 0.853 (s: 0)
Exon 8 37798 37819 ( 22 n); cDNA 1115 1133 ( 19 n); score: 0.727
MATCH 21326110+ SBtuc02-10-21.2146+ 0.726 410 0.299 C
PGS_21326110+_SBtuc02-10-21.2146+ (31403 31411,31654 31664,34644 34880,35109 35126,35508 35546,35648 35709,37695 37706,37798 37819)
Alignment (genomic DNA sequence = upper lines):
GTGATTTTGG TACTATGATA GTTCATACTG AAGATGGCGA CGAAGTGGCA GAATCACCCA 31462
|||| | ||
GTGA-TGTG. .......... .......... .......... .......... .......... 742
TTTTCCCAAG AACAGAGTTC ATACCTGGCC TTGGTAGCAT CAATTCTTTC ACACATGATC 31522
.......... .......... .......... .......... .......... .......... 742
CAAAGAGAGC GGAACTTATT TCAAGTTTTT GGTATGAGAA ACATACATTT ATCTTATTGT 31582
.......... .......... .......... .......... .......... .......... 742
TTCTGTTTTC AGTCATACAA AGCAGCTCAA TGTGAAGTTT TTATTTATCC CATCACAAAT 31642
.......... .......... .......... .......... .......... .......... 742
CTTATGCACA GTTTCTTGAT AGGGCGGAGA ACACAGGTGA TAGTGATGCC AATAAAGATC 31702
|||| | | ||
.......... .TTTCGTCTT AG........ .......... .......... .......... 753
GGGATTTAGA TGATCGTCCT GACATACAGG AATCAAAAGC AATCCCACCT TTAACTGGAA 31762
.......... .......... .......... .......... .......... .......... 753
CAGTGAAGAA GCATATTGGT GCAGAAGGGA CTATAAGACG CCATGATAAT CAAGTTAATT 31822
.......... .......... .......... .......... .......... .......... 753
TGTCACCAGG ATTTGCGAAC ACAACTAAAT TGAACAGCAG CCCGAGCCGC AAAGCGTTTT 31882
.......... .......... .......... .......... .......... .......... 753
CGGTTCAGGA TAAGGTATGG TTCATGGTTT AGACATCAGC TATTTGTTCC CTTGTCTGAG 31942
.......... .......... .......... .......... .......... .......... 753
GCTAAGGTAT TTTAGATTTA GCTATTGCAC ACATTCCCCT TTGAGCCCCT TGTCTAATTC 32002
.......... .......... .......... .......... .......... .......... 753
GCCAGCATTT CTATGACTTC ATTGTAGCTC TGGTCACCCT TTGAGCCCCG TGTCTAATTC 32062
.......... .......... .......... .......... .......... .......... 753
GCCAGCATTT CTATGACTTC ATTGTAGCTC TGGTCAATTT ATGCTGCCGG CAACACTGTA 32122
.......... .......... .......... .......... .......... .......... 753
CCAATACCAT TTCTTAAGGC AATCGACATT TCACCACTAG CTCTAGTATC AGAAAATGAA 32182
.......... .......... .......... .......... .......... .......... 753
GCAGGAAATG GCCTGGCTGG GTCAAGTACA AATGATGCCT TGGAGGCAGT TAGGGAGCTG 32242
.......... .......... .......... .......... .......... .......... 753
TTCAGTGGTG ATGGGCAGGC AAAGAAAGGA CGGAAAGGGC AAAACGAAGT ATGTGGTAGA 32302
.......... .......... .......... .......... .......... .......... 753
TTCTTTTCTT TAGCTCTTGC AGAGTGACCT AACTTTTAAA GCTTGCAGAG GGATACTTAG 32362
.......... .......... .......... .......... .......... .......... 753
TCTAATACTG CATTTGGTGC ATTAGGTCCC TCTTCCTCCG GGTGTGCACC ACAGGCTAAT 32422
.......... .......... .......... .......... .......... .......... 753
GACAAGCCCC ACACTGATGA ACCTGGCTCA AGCGTTAGCG TATCATAAAA CGTGAGTTCA 32482
.......... .......... .......... .......... .......... .......... 753
TTTGAACTAC TCTATGCTGC TAGTGTTTTT ATTTTCTCGC AATATGACTG AAGTAAATAG 32542
.......... .......... .......... .......... .......... .......... 753
CTTTTCTCCT TGTCTTCTGT GAATGTTTTA GGTGCTACGA GGACATGCCT CTACAAGATT 32602
.......... .......... .......... .......... .......... .......... 753
CACAAGCGAC GCAAGAGCAG CAGACGATAC AAAATCTTTG TGATACACTT CGAACCATAC 32662
.......... .......... .......... .......... .......... .......... 753
TGAGGTTGTA GATTTGCAAG AGTGAAGGTT ACAACCTTTG GAGTTCTGAA GCGCTGCATG 32722
.......... .......... .......... .......... .......... .......... 753
GAGCCAAGGG TGAACATGGC TTCTCATGGT GGACACTGAA CCTGCTCGGG GTGGAGCCCC 32782
.......... .......... .......... .......... .......... .......... 753
AAGGATCGAA GGAAGGCATG ACATCTGTGT ACCTTGGAGC AGGCCTAATG ACAACTGCGT 32842
.......... .......... .......... .......... .......... .......... 753
TTGAGCTTGT GGACGGCTGG ACGCTTTGGT GACTGGAAGC TGATTGACAC AGGGATTTCT 32902
.......... .......... .......... .......... .......... .......... 753
GTGGGGAGTG GAAATTTCTG TCTCTGTTAA TAGCCTCTAG GGGTTTCAGC GGTCGGTGTA 32962
.......... .......... .......... .......... .......... .......... 753
TGTAGAGACT GCATCGACAT TTTGCTAATC AAATTTTGCG GCAGTAATGC CTATTGTAGT 33022
.......... .......... .......... .......... .......... .......... 753
CTGGTTTTCA ATCGTTGACA ATGCAATTGT CTTCCTCCAA ATAAAGAGAA ATAGTTGAGC 33082
.......... .......... .......... .......... .......... .......... 753
AGGAATAAAA AAAATGATTT AGGTTGGCTA TCCGAAATCA TGGGCGGCGT GATTTATGCT 33142
.......... .......... .......... .......... .......... .......... 753
GCCATGTCCG CCTATTCCTT GTGCCTGGTC ATTATACGCC ATGCTTCGTG TTGTTACAAG 33202
.......... .......... .......... .......... .......... .......... 753
TGCCAGTTCA TTAACCGCGC GTGTGAACGG CGTGCTTCTT GTTAATGGTT GCTTAACGCC 33262
.......... .......... .......... .......... .......... .......... 753
TGTCCCAGTT GAGGTCGGGA ACATGGAAAT ATTCGGGCTG TTACTGACCA TCCATCTCGA 33322
.......... .......... .......... .......... .......... .......... 753
GTTGACAGGT ACGCTATGTT CTGTGAACAG AGCGCGTTCC ACGTAAGCAA AATTTCTGCT 33382
.......... .......... .......... .......... .......... .......... 753
TGCTGCTAGC CCAACCTGAT GTTTCAAACT TGGATCATGG GTACTATCTT GGTTTTTGTC 33442
.......... .......... .......... .......... .......... .......... 753
CGGAAATAAC CAAATCCGGC GGGACAGCTG AAAGGTAGAC GTGACAACAT AGGTCGGATG 33502
.......... .......... .......... .......... .......... .......... 753
CCGCATCCTA CCAAACCACC GTGGCAGCGA CTACTTACAC TTTGCCCCCA ATACTCAACG 33562
.......... .......... .......... .......... .......... .......... 753
AAGATGCCAA TTGCCAATCA TCAAAATCTA GGGGAGAGGA GGGCCGGCCA GTGATGTGCA 33622
.......... .......... .......... .......... .......... .......... 753
TTTGTAGTGG TGCTACCTAA TTAGGTATCC CTGAAGATTT GTATGGTTTG TTTGTGTCAG 33682
.......... .......... .......... .......... .......... .......... 753
TACATGTGTC TTATTAGGTA TCCTCTTTAC AAAATTGCAT AGAAAGAGAA AGCATGAAAC 33742
.......... .......... .......... .......... .......... .......... 753
ATAACATAGG AGTACTATTA TAAGTTAGTG CATACACCGA TGTACAATCT TGGTTCAGTT 33802
.......... .......... .......... .......... .......... .......... 753
CCTTAGGTTC ATTTATTCTT TTCCTTTTCT TTGTTTGAAA CATCCAGATT AGTTCATTTT 33862
.......... .......... .......... .......... .......... .......... 753
GATGTATTTT TCGATTGATC TATCTATCTA AAGAAAAATA AACTTGTATT GTCATGTGCC 33922
.......... .......... .......... .......... .......... .......... 753
AGGTAATTGG ACTACACGTG TTCTATTTTC GAAGGGACAG CAAAAGATTT TGCTTTGCCA 33982
.......... .......... .......... .......... .......... .......... 753
TAAATAATGT AAAGAGAATT TGACCTTGAT TATAAGGAAA AACATTTCCG AAAAAACATA 34042
.......... .......... .......... .......... .......... .......... 753
CAATTAGGAT ATAAGCGCGA TACAACTTGA GTTAATAAAT CACGCACAAC TTCGTTGGTC 34102
.......... .......... .......... .......... .......... .......... 753
CACTGACCAT GCAAAGTAGA AATACACAAC TTCGGGCAAA ATAACGCCGG TTTCGAGGTT 34162
.......... .......... .......... .......... .......... .......... 753
TGATACATAG TCTTTTTAGG TGCCTCCGTG GTGATCCAGG AAGAGTTCAC CAACCTAGAG 34222
.......... .......... .......... .......... .......... .......... 753
ATCTTAGAAG CAATGGGAGT CTAAAGATCA AATAACTAGA CCGATAATCT AATCACTCAG 34282
.......... .......... .......... .......... .......... .......... 753
CACTTCAACC CGCCTAAGAG AGCAACACTA TAAGCGTGAT ATGTGTCTAT ATTCTTCATT 34342
.......... .......... .......... .......... .......... .......... 753
TTGAATTTTG GCTTCAAGAA AGCTAAAAAA AACCCAAAAG CACCTGGGAG CCCGTGTCTA 34402
.......... .......... .......... .......... .......... .......... 753
TCTCCGCCAA CATCAGGAAA ATGTTGACAT TTTGGATGGA ACTAAATACA CCCATAAAAA 34462
.......... .......... .......... .......... .......... .......... 753
ATGGTATTTT GCATTTCATC TTTCAAAGTA CTTGGCATTT TGTATTTTGC ATTCCATGGA 34522
.......... .......... .......... .......... .......... .......... 753
AAACTAAACA CACCCCTATT TTAGTATGCG TGCATATATA AATGTTTACG TCTGTGTTAC 34582
.......... .......... .......... .......... .......... .......... 753
CACAAAAGTA AACATCAAAA TAGTTTCCTA TGTGACATGG GTCATCACAC CAATGATCAA 34642
.......... .......... .......... .......... .......... .......... 753
GGCCTTGTTT AATTCAAAAA AATTTGCA-A AACAGGCACT GTAGCACTTT CGTTTGTATT 34701
||||||||| | ||| ||| | | | || || |||||||||| ||||||| |
.GCCTTGTTT AGTTCCGAAA AGTGAAAAGT TTTCGGTGCT GTAGCACTTT CGTTTGTTTG 812
TGACAAATAT TGTCTAATCA TAGACTAACT AGGCTCAAAA GATTCGTCTC GGCAATTCCG 34761
||| |||||| | || ||||| | |||||||| ||| |||||| |||||||||| | | || |
TGATAAATAT TATCCAATCA TGGACTAACT AGGATCAAAA GATTCGTCTC GTGATTTACA 872
ACCAAACTAT GCAATTAGTT TTTATTTTTG TCTATATTTA ATACTCCATG CATATGTCTA 34821
|| |||| | | |||||||| ||| |||| | || ||||||| | | |||| ||| || |
ACTAAACCGT GTAATTAGTT TTTGTTTTCG TCCATATTTA CTGTTTCATG CATGTGCCAC 932
AAGATTCGAT GTGACGGAGA AT-TTGAAAA ATTTTGCAAA TTTTTTGGGA ACTAAACAAG 34880
|||||||||| |||||| || || ||||||| |||| || | || ||||||||||
AAGATTCGAT ATGACGGGGA ATCTTGAAAA CTTTTTTGTT TTCAGGGTGA ACTAAACAAG 992
GCCCAAGCTG CAAATCCCTA ATCACTCGTC ATTCTCATAA ATAAAGCTGA AAAAACTAAA 34940
.......... .......... .......... .......... .......... .......... 992
TCCAAGTGGG GCACGCACTT GGACTTTGGC CTCTTGGACT TGAGTGGGCG ACACGCCGGA 35000
.......... .......... .......... .......... .......... .......... 992
TCGGCACCGG CACCTAGGGC TTGTTTAGTT CCAAAAAATT TTGGGAAATG GACATTGTAG 35060
.......... .......... .......... .......... .......... .......... 992
CACTTTCGTT TGTATTTGAC AAATATTGTC CAATTATGGA CTAACTAGGC TCAAAAGATT 35120
|| || ||
.......... .......... .......... .......... ........GC CATAATCATG 1004
CATCTCGTCA ATTCCGACCA AACTGTGTAA TTAGTTTTTA TTTTCGTCTA TATTTAACAC 35180
|||||
CATCTG.... .......... .......... .......... .......... .......... 1010
TCCATGCATG CGTCTAAAGA TTCGATGTGA CGGAGAATAT GAAAAATTTT ACAAAATTTT 35240
.......... .......... .......... .......... .......... .......... 1010
TTCGGAAGTA AACAAGGCCC TAGTACTCGA CTGCTACCGG GGACGACGGT ACGGTGGAAG 35300
.......... .......... .......... .......... .......... .......... 1010
CAGGCGCCTG TCGAGCATCT CCAGTGCTAA ATCGAACAAA ACTGACAAGG TTCGGTTGAG 35360
.......... .......... .......... .......... .......... .......... 1010
TGCAGTACGG TTTGAGAGAG CTGCAGTGTG GCGTCGGTGT TTGCTCCAAA CAAACATTAA 35420
.......... .......... .......... .......... .......... .......... 1010
ACAAATTGGA AGTGACCCTG CCTAGGAGGT TTCACACACA ACATTATCAA TGGCTTGTCC 35480
.......... .......... .......... .......... .......... .......... 1010
TGTATAAAGA TTTTTTTATT GAAACAGTCA CGGCACGGTT TGGTGCTTGA GTTTGGTTCG 35540
| | | | || | || || || ||| || |
.......... .......... .......T-A --ATATGATT TTGT-CTAGA TTTTACTT-G 1038
CTTTTAGTTC TGACAACGAG CAGCCGAACC GTCTAGTGTT CTCGGTTCGA TTTGCTTCTC 35600
||| |
CTTGCA.... .......... .......... .......... .......... .......... 1044
CCTCGGTTCG ATTCTGCGAT ACACTAGAGG TGCCCTTAGG CGTTGTTTAG ATGCATCAAA 35660
||| | || ||
.......... .......... .......... .......... .......TAG AGAAATAAAG 1057
AAC-CCCAAA CTTTACAAGA TTCTCATCAC ATCGAATCTT GCAACACATG CATAGAACAT 35719
|| |||||| | || || || || || | | || ||| || | ||||
GACGCCCAAA ATCTA-TTGA -TCACA-AAC AGC-AAGCTT GCTATTCATG .......... 1103
TAAATATAGA AAAAAAAGAT AACTAATTGC ACAGTTTACC TGTAAATCAC GAGACAAATC 35779
.......... .......... .......... .......... .......... .......... 1103
TTTTAAGCCT AGTTGCTCTA TGAAAGAACA ATGTTTGTCA AATAAAAACA AAAATGCTGC 35839
.......... .......... .......... .......... .......... .......... 1103
AGCATCAAAA TCCAAAAAAT TTTTGGATCT AAACAAGGCC TAAGTGCACC TTAAAAATTA 35899
.......... .......... .......... .......... .......... .......... 1103
AAAAAATTTC AAGATTTTCT GTCACATCGA ATCTTGCGAT ATATGCATGA TTGCATTAAA 35959
.......... .......... .......... .......... .......... .......... 1103
TATAGTCAAA AATAAAAATT AATTACATAG CTTACCTGTA AATCACGAAA TAAATCTTTT 36019
.......... .......... .......... .......... .......... .......... 1103
AAATCTAGTT AGTTCATAAT TAGACAATAT TTATAAAAAA CAAACGAAAG TGCTACAATG 36079
.......... .......... .......... .......... .......... .......... 1103
GCCTTGTTTA GTTCACCCTG AAAACCAAAA AGTTTTCAAG ATTTCCCGTC ACATCGAATC 36139
.......... .......... .......... .......... .......... .......... 1103
TTGTAACACA TGTATGAAAC ATTAAATATA GACGAAAACA AAAACTAATT ACACAGATTA 36199
.......... .......... .......... .......... .......... .......... 1103
GCTGAAAATC ACGTGACAAA TTTTTTGATT CTAGTTAGTC CATGATTAGA TAATATTTAT 36259
.......... .......... .......... .......... .......... .......... 1103
CACAAACAAA CGAAAATGCC ACAGTACCAA AAACTTTTCA CTTTTCGGAA CTAAACAAGG 36319
.......... .......... .......... .......... .......... .......... 1103
CCAATGTATC AAACCAAAAA ATTTTAGGGG CTGTTTGGTT CGTTGTTGAG TTCAGCCTGG 36379
.......... .......... .......... .......... .......... .......... 1103
CTTGTATGCG GCAACCAGGC CCTGGCGGTC CAGGCCGAAC TCATGCAGGC AGCCATTGTT 36439
.......... .......... .......... .......... .......... .......... 1103
TGGTTGGTCG GTTGATTAGA GCCTGGTTGG GTGCATCACT TGTTTGGTTA CCCGTTGCTT 36499
.......... .......... .......... .......... .......... .......... 1103
TGCCTGCCTG CTGCATCAAC TCTCTCATGC ACGAGCCACA ACGCATGCTC ATCCCAGCCT 36559
.......... .......... .......... .......... .......... .......... 1103
GGCCCGATAG AAACGGAAGT GATCTGCGTT TCTGCGGGGC CTGGCTCAGC GAGGTGTTTT 36619
.......... .......... .......... .......... .......... .......... 1103
GTATGCGGGT GGCCTGGCCC TGGCAGCCAT ACAACACACC AAACACGAGA TTCCTGCACC 36679
.......... .......... .......... .......... .......... .......... 1103
AGCGGATGCA TGCACGCGGG CATCAGGCCA ACCAAACACG CCCAGGCCCA GTCGCGTCCG 36739
.......... .......... .......... .......... .......... .......... 1103
TCCCCCAGTT TTCTGGCCTT GGCCGTACGT GCCGCGTGCC CCTCTACCGC GCGCTCCCTG 36799
.......... .......... .......... .......... .......... .......... 1103
TGCCATGTCC CATACCAAAC TCCCATGTGA ATGTGAATTG TGACCACCAT TCTTCGTCAG 36859
.......... .......... .......... .......... .......... .......... 1103
TCATTCACCC GCACCCGCAC GGCGCTACGC AACAACAAAA GCAGGTCCGC TCGTCTCGTC 36919
.......... .......... .......... .......... .......... .......... 1103
TCCCTCCCTC CCGCGGCTCG GCTCGGCTCA CCTCACCTCA CTCCTCTTCG TGCGTCGCCT 36979
.......... .......... .......... .......... .......... .......... 1103
CGCTGCCGCG TCGGGCCAGC GGGTGAGGCG TGACTGGGCT CTCTTCGGCG CGCGCACCGA 37039
.......... .......... .......... .......... .......... .......... 1103
GGGACGGCGG CGGCGTCGAT GGGGAAGCAC ATGCGCATCA AGACGGCGCC CAAGGGCAAC 37099
.......... .......... .......... .......... .......... .......... 1103
CGTGCCCCCC TTCTCGGCGA CGGGGTAGGC CGCCCGCCGT AGGCGCAGGC TCCTATTCGA 37159
.......... .......... .......... .......... .......... .......... 1103
ATTTGGTTTC TGATGATTGC GCTCCGAATT TGGTTTCTGA TCATCGAGCT GGTGCCTGCA 37219
.......... .......... .......... .......... .......... .......... 1103
GGAGACGTCA AGGGGGCTCA CCGACCTGGA AGAGGGCAGC AACGTCCAGG TTAGGCGCCC 37279
.......... .......... .......... .......... .......... .......... 1103
AGCCCCTGCC CTCCTATCCC TTCCTTTCTC CATCTGCCGC ACAAGGACAA ACCTCCCAAT 37339
.......... .......... .......... .......... .......... .......... 1103
TACAAGCGCC GGCTGCATAA CTAATCCTTG CCTTTTTTAT CATTATTTTG TACATACAAT 37399
.......... .......... .......... .......... .......... .......... 1103
TGGAATTCTC TCAGCCAGCG AACGTCGGGT TCTGTCGGGT CATCAAACTT GTGAGTGAGC 37459
.......... .......... .......... .......... .......... .......... 1103
GCTTGTCTCT TCGATTTTTA GCTCTTTCTC TTGCGCTGAT GTTGGTCATG CTGAAACGGA 37519
.......... .......... .......... .......... .......... .......... 1103
TGAGCACGGG TTTGTAGGCC AAGCATGACG CCGGGAAGCT GGTCCTCGCC ACTATGGCGC 37579
.......... .......... .......... .......... .......... .......... 1103
TGCTCGTTGC CTCCCTCAGC AACCTTCTCG TTGTAGGTAC CTGCCACTTG TTGGAAAGAA 37639
.......... .......... .......... .......... .......... .......... 1103
AAGCTATTGA TGCTAATGTT TGTTTTTTGT TATCTTTTTC ACTTTTTGGA ACAAGGATAG 37699
|| |
.......... .......... .......... .......... .......... .....GA-AA 1107
CTGCTAAGCC TTTCCTGTCT TCATGAGGGC TTGAGCACAA GCATGCAGAA ATCTGGTTCC 37759
|||| |
CTGCGCA... .......... .......... .......... .......... .......... 1114
TCTATTAGCA ATTAGCATGT ATGTTGATTT AAATTCAGCT AGTACCTTGA TGGAATTGAA 37819
| ||| || | | | |||||||
.......... .......... .......... ........-T AGT-CCCT-A AGCAATTGAA 1133
********************************************************************************
EST sequence 257 -strand (File: SBtuc02-10-21.7438-)
1 TTGTCATGCC TTGTTTACTT CCAAAAAAAA TTATTATCAC TTTCAGTTTG TATTTGACAA
61 ATATTGTCCA ATCATGAACT AACTAGACTC AAAATATTCG TCTCGCAAAT TACAGGTAAA
121 CTGCAATTAG TTATTATTTT GATCTATATT TAATGCTCCA TGCATGTGCG CAAAATTCGA
181 TGAAACTTTT TTTAAAAATT TTCTGGCAAC TAAACAAGAC CTAAATATAT GATGTGTGCA
241 GCAGTATGTG TTTGCAGATC CAGGTTATTA CCTTCGTTGC CGCAGCTGGT AGCGACGGCG
301 CGGCGTGTGG ATGGAGGCGG AACTCGTGCA TCACCCACTC CGTCTTCCTC CCCTTGGGCG
361 CTCGGCCCCG GTAGAACACC AGCGTCTTGC GCATCCCCAC CACCGCCGCC GCATCCTCGC
421 CGCCGTCGCC GCCGGCGACG ACGGCGCGGT CCTTGCCGGT GGCCTTCCAG TAGCCGGAGC
481 GCGTGGCGCG GTTGGTGCGC TGCCCCGTCG CGTACTTGCG GTCGCGCAGG TTGAAGAAGT
541 ACCACTCCTT TCCACCGACG CACGCAGATT CTGGAAGGTC CCATGGCTCG CACTTGTTGA
601 GGTCGACGTC GACGATGGCT GCGCCGCCGC CATGGCCATG GCCGGAGAGC TTGTCGAGGA
661 GGTAGTCCAG CACGAGCTCG TCGTCCCTGG GATGGAACCT GAACCCCGGG GGCATTCTCG
721 CCTCCATCAT GCTGATCGAC GAGCTCATCT TCTACCCTAC TATCTGCTGC AGTTTCAGCC
781 TCGTGC
Predicted gene structure (within gDNA segment 34163 to 38263):
Exon 1 34686 34831 ( 146 n); cDNA 38 181 ( 144 n); score: 0.829
Intron 1 34832 35138 ( 307 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0)
Exon 2 35139 35146 ( 8 n); cDNA 182 189 ( 8 n); score: 0.750
Intron 2 35147 35226 ( 80 n); Pd: 0.945 (s: 0), Pa: 0.000 (s: 0)
Exon 3 35227 35262 ( 36 n); cDNA 190 223 ( 34 n); score: 0.806
MATCH 21326110+ SBtuc02-10-21.7438- 0.829 190 0.242 C
PGS_21326110+_SBtuc02-10-21.7438- (34686 34831,35139 35146,35227 35262)
Alignment (genomic DNA sequence = upper lines):
CACTTTC-GT TTGTATTTGA CAAATATTGT CTAATCATAG ACTAACTAGG CTCAAAAGAT 34744
||||||| || |||||||||| |||||||||| | |||||| ||||||||| ||||||| ||
CACTTTCAGT TTGTATTTGA CAAATATTGT CCAATCATGA ACTAACTAGA CTCAAAATAT 97
TCGTCTCGGC AATTCCGACC AAACTATGCA ATTAGTTTTT ATTTTTGTCT ATATTTAATA 34804
|||||||| |||| | |||| |||| ||||||| || ||||| ||| |||||||||
TCGTCTCGCA AATTACAGGT AAAC--TGCA ATTAGTTATT ATTTTGATCT ATATTTAATG 155
CTCCATGCAT ATGTCTAAAG ATTCGATGTG ACGGAGAATT TGAAAAATTT TGCAAATTTT 34864
|||||||||| || | || |||||||
CTCCATGCAT GTG-CGCAAA ATTCGAT... .......... .......... .......... 181
TTGGGAACTA AACAAGGCCC AAGCTGCAAA TCCCTAATCA CTCGTCATTC TCATAAATAA 34924
.......... .......... .......... .......... .......... .......... 181
AGCTGAAAAA ACTAAATCCA AGTGGGGCAC GCACTTGGAC TTTGGCCTCT TGGACTTGAG 34984
.......... .......... .......... .......... .......... .......... 181
TGGGCGACAC GCCGGATCGG CACCGGCACC TAGGGCTTGT TTAGTTCCAA AAAATTTTGG 35044
.......... .......... .......... .......... .......... .......... 181
GAAATGGACA TTGTAGCACT TTCGTTTGTA TTTGACAAAT ATTGTCCAAT TATGGACTAA 35104
.......... .......... .......... .......... .......... .......... 181
CTAGGCTCAA AAGATTCATC TCGTCAATTC CGACCAAACT GTGTAATTAG TTTTTATTTT 35164
||||| |
.......... .......... .......... ....GAAACT TT........ .......... 189
CGTCTATATT TAACACTCCA TGCATGCGTC TAAAGATTCG ATGTGACGGA GAATATGAAA 35224
.......... .......... .......... .......... .......... .......... 189
AATTTTACAA AATTTTTTCG GAAGTAAACA AGGCCCTA 35262
||||| || |||||| | | || |||||| | | ||||
..TTTTA-AA AATTTTCTGG CAACTAAACA A-GACCTA 223
********************************************************************************
EST sequence 119 +strand (File: 24978904+)
1 GGCACGAGGG TTTGTTGTTG CTGCTAGTGG AACAATTTCC TCAGCTCATA GGATGCACAC
61 GATTGATCGA GCTGAAGCAA ATCACCGGCA AGGCTGGGGT TGATGCGCGG ATCGTTGGCA
121 TGATGATGGA GGCTTACCAG CCGCTTTGAT CCATCAAGGA TCGCTCTTTG CTATTCAGAA
181 AGGCTACAGG CTCATTGCAG TTATGCCAGC TAAATATTTG CTTGACAAGC TGATCTTGCT
241 GAGATTCATG GGTGCTGAGT TGTACTTAAC CGGTATGATT AGTTGAAGAA AGTTACGGTA
301 TCACCTTAAT TGCTTTTTTC AGTCAAATTT CCTTGGTTAA GGAATTTTAT GGGTGGCCTT
361 CTTCCTTTGG TGTACTGTAT GTGCAGATCC GGCCCTTGGC TTTGCGGGCA TGTTTGACAA
421 AGTTGAACAG CTCCGAGAAC AACTGCCAAA TGTACTTGTT CTGAATCAAG TTACTAAAAA
481 TTTGCAAAAT TTTTTCAGAT TCCCCGTCAC ATCGAATGTT TAGACGTATG CATGGAGTAT
541 TAAATATAGA TGAAAATAAA AACTAATTAC ACAGTTTGGT CGGAATTGAT CAGACGAATC
601 TTTTGAGCCT AGTTAGTCCA TAATTGGACA ATATTTGTCA AATACAAACG AAAATGCTAC
661 TATTCCTATT TTGCAAAATT TTTTGGAAGT AAACAAGGCC TAAGAGAGCA AATTCTG
Predicted gene structure (within gDNA segment 32512 to 36883):
Exon 1 32512 32534 ( 23 n); cDNA 409 427 ( 19 n); score: 0.609
Intron 1 32535 32573 ( 39 n); Pd: 0.355 (s: 0), Pa: 0.998 (s: 0)
Exon 2 32574 32586 ( 13 n); cDNA 428 440 ( 13 n); score: 0.692
Intron 2 32587 33006 ( 420 n); Pd: 0.000 (s: 0), Pa: 0.369 (s: 0)
Exon 3 33007 33032 ( 26 n); cDNA 441 464 ( 24 n); score: 0.654
Intron 3 33033 34824 (1792 n); Pd: 0.000 (s: 0), Pa: 0.648 (s: 0)
Exon 4 34825 34853 ( 29 n); cDNA 465 491 ( 27 n); score: 0.724
Intron 4 34854 36111 (1258 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.76)
Exon 5 36112 36282 ( 171 n); cDNA 492 661 ( 170 n); score: 0.789
MATCH 21326110+ 24978904+ 0.789 262 0.365 C
PGS_21326110+_24978904+ (32512 32534,32574 32586,33007 33032,34825 34853,36112 36282)
Alignment (genomic DNA sequence = upper lines):
TATTTTCTCG CAATATGACT GAAGTAAATA GCTTTTCTCC TTGTCTTCTG TGAATGTTTT 32571
|| || | ||| | | | |||
CATGTT-TGA CAA-A-G-TT GAA....... .......... .......... .......... 427
AGGTGCTACG AGGACATGCC TCTACAAGAT TCACAAGCGA CGCAAGAGCA GCAGACGATA 32631
||| || || ||
..CAGCTCCG AGAAC..... .......... .......... .......... .......... 440
CAAAATCTTT GTGATACACT TCGAACCATA CTGAGGTTGT AGATTTGCAA GAGTGAAGGT 32691
.......... .......... .......... .......... .......... .......... 440
TACAACCTTT GGAGTTCTGA AGCGCTGCAT GGAGCCAAGG GTGAACATGG CTTCTCATGG 32751
.......... .......... .......... .......... .......... .......... 440
TGGACACTGA ACCTGCTCGG GGTGGAGCCC CAAGGATCGA AGGAAGGCAT GACATCTGTG 32811
.......... .......... .......... .......... .......... .......... 440
TACCTTGGAG CAGGCCTAAT GACAACTGCG TTTGAGCTTG TGGACGGCTG GACGCTTTGG 32871
.......... .......... .......... .......... .......... .......... 440
TGACTGGAAG CTGATTGACA CAGGGATTTC TGTGGGGAGT GGAAATTTCT GTCTCTGTTA 32931
.......... .......... .......... .......... .......... .......... 440
ATAGCCTCTA GGGGTTTCAG CGGTCGGTGT ATGTAGAGAC TGCATCGACA TTTTGCTAAT 32991
.......... .......... .......... .......... .......... .......... 440
CAAATTTTGC GGCAGTAATG CCTATTGTAG TCTGGTTTTC AATCGTTGAC AATGCAATTG 33051
| || || | |||| || ||| | |
.......... .....AACTG CCAAATGTA- -CTTGTTCTG A......... .......... 464
TCTTCCTCCA AATAAAGAGA AATAGTTGAG CAGGAATAAA AAAAATGATT TAGGTTGGCT 33111
.......... .......... .......... .......... .......... .......... 464
ATCCGAAATC ATGGGCGGCG TGATTTATGC TGCCATGTCC GCCTATTCCT TGTGCCTGGT 33171
.......... .......... .......... .......... .......... .......... 464
CATTATACGC CATGCTTCGT GTTGTTACAA GTGCCAGTTC ATTAACCGCG CGTGTGAACG 33231
.......... .......... .......... .......... .......... .......... 464
GCGTGCTTCT TGTTAATGGT TGCTTAACGC CTGTCCCAGT TGAGGTCGGG AACATGGAAA 33291
.......... .......... .......... .......... .......... .......... 464
TATTCGGGCT GTTACTGACC ATCCATCTCG AGTTGACAGG TACGCTATGT TCTGTGAACA 33351
.......... .......... .......... .......... .......... .......... 464
GAGCGCGTTC CACGTAAGCA AAATTTCTGC TTGCTGCTAG CCCAACCTGA TGTTTCAAAC 33411
.......... .......... .......... .......... .......... .......... 464
TTGGATCATG GGTACTATCT TGGTTTTTGT CCGGAAATAA CCAAATCCGG CGGGACAGCT 33471
.......... .......... .......... .......... .......... .......... 464
GAAAGGTAGA CGTGACAACA TAGGTCGGAT GCCGCATCCT ACCAAACCAC CGTGGCAGCG 33531
.......... .......... .......... .......... .......... .......... 464
ACTACTTACA CTTTGCCCCC AATACTCAAC GAAGATGCCA ATTGCCAATC ATCAAAATCT 33591
.......... .......... .......... .......... .......... .......... 464
AGGGGAGAGG AGGGCCGGCC AGTGATGTGC ATTTGTAGTG GTGCTACCTA ATTAGGTATC 33651
.......... .......... .......... .......... .......... .......... 464
CCTGAAGATT TGTATGGTTT GTTTGTGTCA GTACATGTGT CTTATTAGGT ATCCTCTTTA 33711
.......... .......... .......... .......... .......... .......... 464
CAAAATTGCA TAGAAAGAGA AAGCATGAAA CATAACATAG GAGTACTATT ATAAGTTAGT 33771
.......... .......... .......... .......... .......... .......... 464
GCATACACCG ATGTACAATC TTGGTTCAGT TCCTTAGGTT CATTTATTCT TTTCCTTTTC 33831
.......... .......... .......... .......... .......... .......... 464
TTTGTTTGAA ACATCCAGAT TAGTTCATTT TGATGTATTT TTCGATTGAT CTATCTATCT 33891
.......... .......... .......... .......... .......... .......... 464
AAAGAAAAAT AAACTTGTAT TGTCATGTGC CAGGTAATTG GACTACACGT GTTCTATTTT 33951
.......... .......... .......... .......... .......... .......... 464
CGAAGGGACA GCAAAAGATT TTGCTTTGCC ATAAATAATG TAAAGAGAAT TTGACCTTGA 34011
.......... .......... .......... .......... .......... .......... 464
TTATAAGGAA AAACATTTCC GAAAAAACAT ACAATTAGGA TATAAGCGCG ATACAACTTG 34071
.......... .......... .......... .......... .......... .......... 464
AGTTAATAAA TCACGCACAA CTTCGTTGGT CCACTGACCA TGCAAAGTAG AAATACACAA 34131
.......... .......... .......... .......... .......... .......... 464
CTTCGGGCAA AATAACGCCG GTTTCGAGGT TTGATACATA GTCTTTTTAG GTGCCTCCGT 34191
.......... .......... .......... .......... .......... .......... 464
GGTGATCCAG GAAGAGTTCA CCAACCTAGA GATCTTAGAA GCAATGGGAG TCTAAAGATC 34251
.......... .......... .......... .......... .......... .......... 464
AAATAACTAG ACCGATAATC TAATCACTCA GCACTTCAAC CCGCCTAAGA GAGCAACACT 34311
.......... .......... .......... .......... .......... .......... 464
ATAAGCGTGA TATGTGTCTA TATTCTTCAT TTTGAATTTT GGCTTCAAGA AAGCTAAAAA 34371
.......... .......... .......... .......... .......... .......... 464
AAACCCAAAA GCACCTGGGA GCCCGTGTCT ATCTCCGCCA ACATCAGGAA AATGTTGACA 34431
.......... .......... .......... .......... .......... .......... 464
TTTTGGATGG AACTAAATAC ACCCATAAAA AATGGTATTT TGCATTTCAT CTTTCAAAGT 34491
.......... .......... .......... .......... .......... .......... 464
ACTTGGCATT TTGTATTTTG CATTCCATGG AAAACTAAAC ACACCCCTAT TTTAGTATGC 34551
.......... .......... .......... .......... .......... .......... 464
GTGCATATAT AAATGTTTAC GTCTGTGTTA CCACAAAAGT AAACATCAAA ATAGTTTCCT 34611
.......... .......... .......... .......... .......... .......... 464
ATGTGACATG GGTCATCACA CCAATGATCA AGGCCTTGTT TAATTCAAAA AAATTTGCAA 34671
.......... .......... .......... .......... .......... .......... 464
AACAGGCACT GTAGCACTTT CGTTTGTATT TGACAAATAT TGTCTAATCA TAGACTAACT 34731
.......... .......... .......... .......... .......... .......... 464
AGGCTCAAAA GATTCGTCTC GGCAATTCCG ACCAAACTAT GCAATTAGTT TTTATTTTTG 34791
.......... .......... .......... .......... .......... .......... 464
TCTATATTTA ATACTCCATG CATATGTCTA AAGATTCGAT GTGACGGAGA ATTTGAAAAA 34851
| || | || || | | ||||| ||||
.......... .......... .......... ...A-TC-AA GTTACTAAAA ATTTGCAAAA 489
TTTTGCAAAT TTTTTGGGAA CTAAACAAGG CCCAAGCTGC AAATCCCTAA TCACTCGTCA 34911
||
TT........ .......... .......... .......... .......... .......... 491
TTCTCATAAA TAAAGCTGAA AAAACTAAAT CCAAGTGGGG CACGCACTTG GACTTTGGCC 34971
.......... .......... .......... .......... .......... .......... 491
TCTTGGACTT GAGTGGGCGA CACGCCGGAT CGGCACCGGC ACCTAGGGCT TGTTTAGTTC 35031
.......... .......... .......... .......... .......... .......... 491
CAAAAAATTT TGGGAAATGG ACATTGTAGC ACTTTCGTTT GTATTTGACA AATATTGTCC 35091
.......... .......... .......... .......... .......... .......... 491
AATTATGGAC TAACTAGGCT CAAAAGATTC ATCTCGTCAA TTCCGACCAA ACTGTGTAAT 35151
.......... .......... .......... .......... .......... .......... 491
TAGTTTTTAT TTTCGTCTAT ATTTAACACT CCATGCATGC GTCTAAAGAT TCGATGTGAC 35211
.......... .......... .......... .......... .......... .......... 491
GGAGAATATG AAAAATTTTA CAAAATTTTT TCGGAAGTAA ACAAGGCCCT AGTACTCGAC 35271
.......... .......... .......... .......... .......... .......... 491
TGCTACCGGG GACGACGGTA CGGTGGAAGC AGGCGCCTGT CGAGCATCTC CAGTGCTAAA 35331
.......... .......... .......... .......... .......... .......... 491
TCGAACAAAA CTGACAAGGT TCGGTTGAGT GCAGTACGGT TTGAGAGAGC TGCAGTGTGG 35391
.......... .......... .......... .......... .......... .......... 491
CGTCGGTGTT TGCTCCAAAC AAACATTAAA CAAATTGGAA GTGACCCTGC CTAGGAGGTT 35451
.......... .......... .......... .......... .......... .......... 491
TCACACACAA CATTATCAAT GGCTTGTCCT GTATAAAGAT TTTTTTATTG AAACAGTCAC 35511
.......... .......... .......... .......... .......... .......... 491
GGCACGGTTT GGTGCTTGAG TTTGGTTCGC TTTTAGTTCT GACAACGAGC AGCCGAACCG 35571
.......... .......... .......... .......... .......... .......... 491
TCTAGTGTTC TCGGTTCGAT TTGCTTCTCC CTCGGTTCGA TTCTGCGATA CACTAGAGGT 35631
.......... .......... .......... .......... .......... .......... 491
GCCCTTAGGC GTTGTTTAGA TGCATCAAAA ACCCCAAACT TTACAAGATT CTCATCACAT 35691
.......... .......... .......... .......... .......... .......... 491
CGAATCTTGC AACACATGCA TAGAACATTA AATATAGAAA AAAAAGATAA CTAATTGCAC 35751
.......... .......... .......... .......... .......... .......... 491
AGTTTACCTG TAAATCACGA GACAAATCTT TTAAGCCTAG TTGCTCTATG AAAGAACAAT 35811
.......... .......... .......... .......... .......... .......... 491
GTTTGTCAAA TAAAAACAAA AATGCTGCAG CATCAAAATC CAAAAAATTT TTGGATCTAA 35871
.......... .......... .......... .......... .......... .......... 491
ACAAGGCCTA AGTGCACCTT AAAAATTAAA AAAATTTCAA GATTTTCTGT CACATCGAAT 35931
.......... .......... .......... .......... .......... .......... 491
CTTGCGATAT ATGCATGATT GCATTAAATA TAGTCAAAAA TAAAAATTAA TTACATAGCT 35991
.......... .......... .......... .......... .......... .......... 491
TACCTGTAAA TCACGAAATA AATCTTTTAA ATCTAGTTAG TTCATAATTA GACAATATTT 36051
.......... .......... .......... .......... .......... .......... 491
ATAAAAAACA AACGAAAGTG CTACAATGGC CTTGTTTAGT TCACCCTGAA AACCAAAAAG 36111
.......... .......... .......... .......... .......... .......... 491
TTTTCAAGAT TTCCCGTCAC ATCGAATCTT GTAACACATG TATGAAACAT TAAATATAGA 36171
||||| |||| | |||||||| ||||||| || || ||| ||| | || ||||||||||
TTTTC-AGAT TCCCCGTCAC ATCGAATGTT TAGACGTATG CATGGAGTAT TAAATATAGA 550
CGAAAACAAA AACTAATTAC ACAGATTAGC TGAAAATCAC GTGACAAATT TTTTGATTCT 36231
||||| ||| |||||||||| |||| || | | || | | ||| ||| |||||| ||
TGAAAATAAA AACTAATTAC ACAGTTTGGT CGGAATTGAT CAGACGAATC TTTTGAGCCT 610
AGTTAGTCCA TGATTAGATA ATATTTATCA CAAACAAACG AAAATGCCAC A 36282
|||||||||| | ||| || | |||||| ||| | ||||||| ||||||| ||
AGTTAGTCCA TAATTGGACA ATATTTGTCA AATACAAACG AAAATGCTAC T 661
********************************************************************************
EST sequence 260 -strand (File: 13392307-)
1 CCCCCCAAAA AGAGCCTCAA GAGTCAAGAG GCTCTCGTGA GGGCAATAAA TTTTGCATTT
61 TGGATGGAAC TAAACATGAC CCTCAAAATT TCGGCATTTT GCATTTCATC ACTCCAAAGT
121 AGTTGACATT TTGCATTTTG GATTCTATGG GGAACTAAAC ACCCCCATAG TCTTTTTAAA
181 TGCAAGAAAA TAGTCTAACT GACCTATATA TCAACAACAA ACTCATTTAC TACAAGTAGC
241 ACAAATTGAG TATTCGGGTC AGATAAATAG ATATTAAAAA GAATGAGCAA GCTAAAATCT
301 CAAAAGGCAA TCTCAGGCAA TTGGAACCTA CCAAATCATG GTACACACGT AGCCGCTCTT
361 TTACCACTTC TTCAGTATCA TCTGCTCTGG TTATTAGCTT CGATTCACAC TGTGGAGGAG
421 GCAATAGTGG AGGCATGTAC ATTCGAGCTC CACCATTTTC ACCCTCGATA TCAATGGAGG
481 CCACATTGAA GTTTCCGNCC ACACCCTCGT GC
Predicted gene structure (within gDNA segment 33850 to 36933):
Exon 1 34431 34540 ( 110 n); cDNA 57 169 ( 113 n); score: 0.782
Intron 1 34541 34643 ( 103 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.66)
Exon 2 34644 34684 ( 41 n); cDNA 170 208 ( 39 n); score: 0.659
Intron 2 34685 35108 ( 424 n); Pd: 0.000 (s: 0.66), Pa: 0.485 (s: 0)
Exon 3 35109 35126 ( 18 n); cDNA 209 224 ( 16 n); score: 0.556
Intron 3 35127 36195 (1069 n); Pd: 0.317 (s: 0), Pa: 0.079 (s: 0.58)
Exon 4 36196 36282 ( 87 n); cDNA 225 304 ( 80 n); score: 0.598
MATCH 21326110+ 13392307- 0.701 256 0.500 C
PGS_21326110+_13392307- (34431 34540,34644 34684,35109 35126,36196 36282)
Alignment (genomic DNA sequence = upper lines):
ATTTTGGATG GAACTAAATA -CACCCATAA AAAAT-GGTA TTTTGCATTT CATC-TTTCA 34487
|||||||||| |||||||| | |||| || || | || | |||||||||| |||| | ||
ATTTTGGATG GAACTAAACA TGACCCTCAA AATTTCGGCA TTTTGCATTT CATCACTCCA 116
AAGTACTTGG CATTTTGTAT TTTGCATTCC ATGGAAAACT AAACACACCC CTATTTTAGT 34547
||||| ||| ||||||| || |||| |||| |||| |||| |||||| ||| ||
AAGTAGTTGA CATTTTGCAT TTTGGATTCT ATGGGGAACT AAACACCCCC ATA....... 169
ATGCGTGCAT ATATAAATGT TTACGTCTGT GTTACCACAA AAGTAAACAT CAAAATAGTT 34607
.......... .......... .......... .......... .......... .......... 169
TCCTATGTGA CATGGGTCAT CACACCAATG ATCAAGGCCT TGTTTAATTC AAAAAAATTT 34667
| || | || ||| | || |||| |
.......... .......... .......... ......GTCT TTTTAAATGC AAGAAAA-TA 192
GCAAAACAGG CACTGTAGCA CTTTCGTTTG TATTTGACAA ATATTGTCTA ATCATAGACT 34727
| ||| | | || ||
GTCTAACTGA C-CTATA... .......... .......... .......... .......... 208
AACTAGGCTC AAAAGATTCG TCTCGGCAAT TCCGACCAAA CTATGCAATT AGTTTTTATT 34787
.......... .......... .......... .......... .......... .......... 208
TTTGTCTATA TTTAATACTC CATGCATATG TCTAAAGATT CGATGTGACG GAGAATTTGA 34847
.......... .......... .......... .......... .......... .......... 208
AAAATTTTGC AAATTTTTTG GGAACTAAAC AAGGCCCAAG CTGCAAATCC CTAATCACTC 34907
.......... .......... .......... .......... .......... .......... 208
GTCATTCTCA TAAATAAAGC TGAAAAAACT AAATCCAAGT GGGGCACGCA CTTGGACTTT 34967
.......... .......... .......... .......... .......... .......... 208
GGCCTCTTGG ACTTGAGTGG GCGACACGCC GGATCGGCAC CGGCACCTAG GGCTTGTTTA 35027
.......... .......... .......... .......... .......... .......... 208
GTTCCAAAAA ATTTTGGGAA ATGGACATTG TAGCACTTTC GTTTGTATTT GACAAATATT 35087
.......... .......... .......... .......... .......... .......... 208
GTCCAATTAT GGACTAACTA GGCTCAAAAG ATTCATCTCG TCAATTCCGA CCAAACTGTG 35147
|||| | | | |||
.......... .......... .TATCAACA- A-CAAACTC. .......... .......... 224
TAATTAGTTT TTATTTTCGT CTATATTTAA CACTCCATGC ATGCGTCTAA AGATTCGATG 35207
.......... .......... .......... .......... .......... .......... 224
TGACGGAGAA TATGAAAAAT TTTACAAAAT TTTTTCGGAA GTAAACAAGG CCCTAGTACT 35267
.......... .......... .......... .......... .......... .......... 224
CGACTGCTAC CGGGGACGAC GGTACGGTGG AAGCAGGCGC CTGTCGAGCA TCTCCAGTGC 35327
.......... .......... .......... .......... .......... .......... 224
TAAATCGAAC AAAACTGACA AGGTTCGGTT GAGTGCAGTA CGGTTTGAGA GAGCTGCAGT 35387
.......... .......... .......... .......... .......... .......... 224
GTGGCGTCGG TGTTTGCTCC AAACAAACAT TAAACAAATT GGAAGTGACC CTGCCTAGGA 35447
.......... .......... .......... .......... .......... .......... 224
GGTTTCACAC ACAACATTAT CAATGGCTTG TCCTGTATAA AGATTTTTTT ATTGAAACAG 35507
.......... .......... .......... .......... .......... .......... 224
TCACGGCACG GTTTGGTGCT TGAGTTTGGT TCGCTTTTAG TTCTGACAAC GAGCAGCCGA 35567
.......... .......... .......... .......... .......... .......... 224
ACCGTCTAGT GTTCTCGGTT CGATTTGCTT CTCCCTCGGT TCGATTCTGC GATACACTAG 35627
.......... .......... .......... .......... .......... .......... 224
AGGTGCCCTT AGGCGTTGTT TAGATGCATC AAAAACCCCA AACTTTACAA GATTCTCATC 35687
.......... .......... .......... .......... .......... .......... 224
ACATCGAATC TTGCAACACA TGCATAGAAC ATTAAATATA GAAAAAAAAG ATAACTAATT 35747
.......... .......... .......... .......... .......... .......... 224
GCACAGTTTA CCTGTAAATC ACGAGACAAA TCTTTTAAGC CTAGTTGCTC TATGAAAGAA 35807
.......... .......... .......... .......... .......... .......... 224
CAATGTTTGT CAAATAAAAA CAAAAATGCT GCAGCATCAA AATCCAAAAA ATTTTTGGAT 35867
.......... .......... .......... .......... .......... .......... 224
CTAAACAAGG CCTAAGTGCA CCTTAAAAAT TAAAAAAATT TCAAGATTTT CTGTCACATC 35927
.......... .......... .......... .......... .......... .......... 224
GAATCTTGCG ATATATGCAT GATTGCATTA AATATAGTCA AAAATAAAAA TTAATTACAT 35987
.......... .......... .......... .......... .......... .......... 224
AGCTTACCTG TAAATCACGA AATAAATCTT TTAAATCTAG TTAGTTCATA ATTAGACAAT 36047
.......... .......... .......... .......... .......... .......... 224
ATTTATAAAA AACAAACGAA AGTGCTACAA TGGCCTTGTT TAGTTCACCC TGAAAACCAA 36107
.......... .......... .......... .......... .......... .......... 224
AAAGTTTTCA AGATTTCCCG TCACATCGAA TCTTGTAACA CATGTATGAA ACATTAAATA 36167
.......... .......... .......... .......... .......... .......... 224
TAGACGAAAA CAAAAACTAA TTACACAGAT TAGCTGAAAA TCACGTGACA AATTTTTTGA 36227
|| | || | || | | ||| |||| | |
.......... .......... ........AT TTACT-ACAA GTA-G-CACA AATTGAGT-A 252
TTCTAGTTAG TCCATGATTA GATAATATTT ATCACAAACA AACGAAAATG CCACA 36282
||| || || || | || |||| || | | | || | | ||||| || |
TTCGGGTCAG ---ATAAATA GATATTAAAA AGAATGAGCA AGCTAAAATC TCAAA 304
********************************************************************************
EST sequence 98 +strand (File: SBtuc02-10-21.8317+)
1 CTTCCTCACC CACTGCGGCT GGAACTCCAT CCTGGAGAGC GTGTGGGCGG GCGTGCCCAT
61 GCTGTGCTTC CCGCTGCTCA CGGACCAGAT CACCAACCGC CGCCTCGTCG CGCGGGAGTG
121 GCGCGCCGGC GTGTCCATCG GGGACCGCGG CGCGGTGCGC GCAGACGAGG TGAGGGCACG
181 GATCGAGGGG CTCATGGGCG GGGAAGACGG CGTCATGCTC AGGGAGCAGG TGAAGAAGCT
241 GAGGGGCACA CTCGAGGCTG CCGTGGCGCC CGGTGGCTCG TCGCGGCGCA GCTTCGACGA
301 GTTCGTCGAC GAGCTCAAGC GCAGGTGCGG AGGCAGCCAC TGATCCGCGC AGTTTCTCGG
361 CGAGCTCAAG CGCCGGTGCT GATGAGGCAG CCACTGATCC GAAGCTCGCG GACAGGAGCT
421 TGAGGTGGGC CTCAGAAAGT CAGAATACGT GTGCGATGTA GGCCTTGTAT CGTAGCGTCA
481 GCTTGTACCG TTTTGTATTG TAAACTGGCT TCATCATCGA AGCGTGTACG GAGTATGTAT
541 GCTGTGTACG GAGTACGGTG GGGTATTACT GTTGTGCAGG TTTGATGTGA TGTCTACCTA
601 GTACATAGGT CTTGTTTAGT TGGTAAAAAT TTTCAAGATT TCCGGTCACA TCGAATCTTT
661 GGTCGTATGC ATAAAGAATT AAATATAGAC GAAAATAAAA ACTAATTACA CAGTTTATCT
721 GTAATTTGTG
Predicted gene structure (within gDNA segment 32667 to 36585):
Exon 1 35012 35038 ( 27 n); cDNA 603 629 ( 27 n); score: 0.815
Intron 1 35039 36111 (1073 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.78)
Exon 2 36112 36212 ( 101 n); cDNA 630 730 ( 101 n); score: 0.812
MATCH 21326110+ SBtuc02-10-21.8317+ 0.812 128 0.175 C
PGS_21326110+_SBtuc02-10-21.8317+ (35012 35038,36112 36212)
Alignment (genomic DNA sequence = upper lines):
ACCTAGGGCT TGTTTAGTTC CAAAAAATTT TGGGAAATGG ACATTGTAGC ACTTTCGTTT 35071
|| |||| || ||||||||| |||||
ACATAGGTCT TGTTTAGTTG GTAAAAA... .......... .......... .......... 629
GTATTTGACA AATATTGTCC AATTATGGAC TAACTAGGCT CAAAAGATTC ATCTCGTCAA 35131
.......... .......... .......... .......... .......... .......... 629
TTCCGACCAA ACTGTGTAAT TAGTTTTTAT TTTCGTCTAT ATTTAACACT CCATGCATGC 35191
.......... .......... .......... .......... .......... .......... 629
GTCTAAAGAT TCGATGTGAC GGAGAATATG AAAAATTTTA CAAAATTTTT TCGGAAGTAA 35251
.......... .......... .......... .......... .......... .......... 629
ACAAGGCCCT AGTACTCGAC TGCTACCGGG GACGACGGTA CGGTGGAAGC AGGCGCCTGT 35311
.......... .......... .......... .......... .......... .......... 629
CGAGCATCTC CAGTGCTAAA TCGAACAAAA CTGACAAGGT TCGGTTGAGT GCAGTACGGT 35371
.......... .......... .......... .......... .......... .......... 629
TTGAGAGAGC TGCAGTGTGG CGTCGGTGTT TGCTCCAAAC AAACATTAAA CAAATTGGAA 35431
.......... .......... .......... .......... .......... .......... 629
GTGACCCTGC CTAGGAGGTT TCACACACAA CATTATCAAT GGCTTGTCCT GTATAAAGAT 35491
.......... .......... .......... .......... .......... .......... 629
TTTTTTATTG AAACAGTCAC GGCACGGTTT GGTGCTTGAG TTTGGTTCGC TTTTAGTTCT 35551
.......... .......... .......... .......... .......... .......... 629
GACAACGAGC AGCCGAACCG TCTAGTGTTC TCGGTTCGAT TTGCTTCTCC CTCGGTTCGA 35611
.......... .......... .......... .......... .......... .......... 629
TTCTGCGATA CACTAGAGGT GCCCTTAGGC GTTGTTTAGA TGCATCAAAA ACCCCAAACT 35671
.......... .......... .......... .......... .......... .......... 629
TTACAAGATT CTCATCACAT CGAATCTTGC AACACATGCA TAGAACATTA AATATAGAAA 35731
.......... .......... .......... .......... .......... .......... 629
AAAAAGATAA CTAATTGCAC AGTTTACCTG TAAATCACGA GACAAATCTT TTAAGCCTAG 35791
.......... .......... .......... .......... .......... .......... 629
TTGCTCTATG AAAGAACAAT GTTTGTCAAA TAAAAACAAA AATGCTGCAG CATCAAAATC 35851
.......... .......... .......... .......... .......... .......... 629
CAAAAAATTT TTGGATCTAA ACAAGGCCTA AGTGCACCTT AAAAATTAAA AAAATTTCAA 35911
.......... .......... .......... .......... .......... .......... 629
GATTTTCTGT CACATCGAAT CTTGCGATAT ATGCATGATT GCATTAAATA TAGTCAAAAA 35971
.......... .......... .......... .......... .......... .......... 629
TAAAAATTAA TTACATAGCT TACCTGTAAA TCACGAAATA AATCTTTTAA ATCTAGTTAG 36031
.......... .......... .......... .......... .......... .......... 629
TTCATAATTA GACAATATTT ATAAAAAACA AACGAAAGTG CTACAATGGC CTTGTTTAGT 36091
.......... .......... .......... .......... .......... .......... 629
TCACCCTGAA AACCAAAAAG TTTTCAAGAT TTCCCGTCAC ATCGAATCTT GTAACACATG 36151
|||||||||| |||| ||||| |||||||||| | |||
.......... .......... TTTTCAAGAT TTCCGGTCAC ATCGAATCTT TGGTCGTATG 669
TATGAAACAT TAAATATAGA CGAAAACAAA AACTAATTAC ACAGATTAGC TGAAAATCAC 36211
|| || || |||||||||| |||||| ||| |||||||||| |||| ||| | || || |
CATAAAGAAT TAAATATAGA CGAAAATAAA AACTAATTAC ACAGTTTATC TGTAATTTGT 729
G 36212
|
G 730
********************************************************************************
EST sequence 85 +strand (File: SBtuc02-10-21.7438+)
1 GCACGAGGCT GAAACTGCAG CAGATAGTAG GGTAGAAGAT GAGCTCGTCG ATCAGCATGA
61 TGGAGGCGAG AATGCCCCCG GGGTTCAGGT TCCATCCCAG GGACGACGAG CTCGTGCTGG
121 ACTACCTCCT CGACAAGCTC TCCGGCCATG GCCATGGCGG CGGCGCAGCC ATCGTCGACG
181 TCGACCTCAA CAAGTGCGAG CCATGGGACC TTCCAGAATC TGCGTGCGTC GGTGGAAAGG
241 AGTGGTACTT CTTCAACCTG CGCGACCGCA AGTACGCGAC GGGGCAGCGC ACCAACCGCG
301 CCACGCGCTC CGGCTACTGG AAGGCCACCG GCAAGGACCG CGCCGTCGTC GCCGGCGGCG
361 ACGGCGGCGA GGATGCGGCG GCGGTGGTGG GGATGCGCAA GACGCTGGTG TTCTACCGGG
421 GCCGAGCGCC CAAGGGGAGG AAGACGGAGT GGGTGATGCA CGAGTTCCGC CTCCATCCAC
481 ACGCCGCGCC GTCGCTACCA GCTGCGGCAA CGAAGGTAAT AACCTGGATC TGCAAACACA
541 TACTGCTGCA CACATCATAT ATTTAGGTCT TGTTTAGTTG CCAGAAAATT TTTAAAAAAA
601 GTTTCATCGA ATTTTGCGCA CATGCATGGA GCATTAAATA TAGATCAAAA TAATAACTAA
661 TTGCAGTTTA CCTGTAATTT GCGAGACGAA TATTTTGAGT CTAGTTAGTT CATGATTGGA
721 CAATATTTGT CAAATACAAA CTGAAAGTGA TAATAATTTT TTTTGGAAGT AAACAAGGCA
781 TGACAA
Predicted gene structure (within gDNA segment 32262 to 36706):
Exon 1 35014 35042 ( 29 n); cDNA 563 592 ( 30 n); score: 0.828
Intron 1 35043 35108 ( 66 n); Pd: 0.000 (s: 0), Pa: 0.485 (s: 0)
Exon 2 35109 35121 ( 13 n); cDNA 593 605 ( 13 n); score: 0.615
Intron 2 35122 35689 ( 568 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82)
Exon 3 35690 35832 ( 143 n); cDNA 606 745 ( 140 n); score: 0.797
MATCH 21326110+ SBtuc02-10-21.7438+ 0.797 185 0.235 C
PGS_21326110+_SBtuc02-10-21.7438+ (35014 35042,35109 35121,35690 35832)
Alignment (genomic DNA sequence = upper lines):
CTAGGGCTTG TTTAGTT-CC AAAAAATTTT GGGAAATGGA CATTGTAGCA CTTTCGTTTG 35072
|||| |||| ||||||| || | ||||||||
TTAGGTCTTG TTTAGTTGCC AGAAAATTTT .......... .......... .......... 592
TATTTGACAA ATATTGTCCA ATTATGGACT AACTAGGCTC AAAAGATTCA TCTCGTCAAT 35132
||||| |||
.......... .......... .......... ......TAAA AAAAGTTTC. .......... 605
TCCGACCAAA CTGTGTAATT AGTTTTTATT TTCGTCTATA TTTAACACTC CATGCATGCG 35192
.......... .......... .......... .......... .......... .......... 605
TCTAAAGATT CGATGTGACG GAGAATATGA AAAATTTTAC AAAATTTTTT CGGAAGTAAA 35252
.......... .......... .......... .......... .......... .......... 605
CAAGGCCCTA GTACTCGACT GCTACCGGGG ACGACGGTAC GGTGGAAGCA GGCGCCTGTC 35312
.......... .......... .......... .......... .......... .......... 605
GAGCATCTCC AGTGCTAAAT CGAACAAAAC TGACAAGGTT CGGTTGAGTG CAGTACGGTT 35372
.......... .......... .......... .......... .......... .......... 605
TGAGAGAGCT GCAGTGTGGC GTCGGTGTTT GCTCCAAACA AACATTAAAC AAATTGGAAG 35432
.......... .......... .......... .......... .......... .......... 605
TGACCCTGCC TAGGAGGTTT CACACACAAC ATTATCAATG GCTTGTCCTG TATAAAGATT 35492
.......... .......... .......... .......... .......... .......... 605
TTTTTATTGA AACAGTCACG GCACGGTTTG GTGCTTGAGT TTGGTTCGCT TTTAGTTCTG 35552
.......... .......... .......... .......... .......... .......... 605
ACAACGAGCA GCCGAACCGT CTAGTGTTCT CGGTTCGATT TGCTTCTCCC TCGGTTCGAT 35612
.......... .......... .......... .......... .......... .......... 605
TCTGCGATAC ACTAGAGGTG CCCTTAGGCG TTGTTTAGAT GCATCAAAAA CCCCAAACTT 35672
.......... .......... .......... .......... .......... .......... 605
TACAAGATTC TCATCACATC GAATCTTGCA ACACATGCAT AGAACATTAA ATATAGAAAA 35732
||| |||| |||| ||||||||| || |||||| ||||||| |
.......... .......ATC GAATTTTGC- GCACATGCAT GGAGCATTAA ATATAGATCA 647
AAAAGATAAC TAATTGCACA GTTTACCTGT AAATCACGAG ACAAATCTTT TAAGCCTAGT 35792
||| ||||| |||||| || |||||||||| || | |||| || ||| ||| | || |||||
AAATAATAAC TAATTG--CA GTTTACCTGT AATTTGCGAG ACGAATATTT TGAGTCTAGT 705
TGCTCTATGA AAGAACAATG TTTGTCAAAT AAAAACAAAA 35832
| | |||| | ||||| |||||||||| | |||| ||
TAGTTCATGA TTGGACAATA TTTGTCAAAT ACAAACTGAA 745
********************************************************************************
EST sequence 243 -strand (File: SBtuc02-10-21.4286-)
1 CCACATCACG CAATTATTGA TTATTATTTC CTTGTAGTAG ACTAACTAAT AATGCATAAT
61 ACGTAGTACG TACGTGCAGT GTACATGGAC CACACCACCA AGCAATGCAA CATTTGCAAG
121 ATGCAAACCA TGCAAGAACC AACACGGCAG CGGATGATCC CCAAAGGGTT TTTTTCAACA
181 AAAAAACACA CAAACCCGTG TACACTAATC TGACGACCTC CGGTGGCGCG TCTCGTAAGG
241 TAAGGCCTTG TTTACTTCCT AGAAAATTTT GCAAAATTTT TCAGATTCCC CGTCACATCG
301 AATCTTTAGA CGCATGCATG GAGTATTAAA TATAGACGAA AATAAAAACT AATTGCACAG
361 TTTGGTCGAA ATTGACGAGA CGAATCTTTT GAGCCTAGTT ACTCCATGAT TAGACAATAT
421 TTGTTAAATA AAAACGAAAA TGCTACAGTG TCCATTTCCC AAAATTTTTC GGAACTAAAC
481 AAGGCCTAAA GCTAGAGAAA AGAAAACTGC CATGCCCGTG CACAGGCAGA TTGAGATCGA
541 GAGACTTTGG TTACAGGGCC AGGATGGACC CGGCCCGGAC CTTGCCGCGC TCCCGTTCCC
601 GTGGGCCTTC CGCTTCCGCT TCCCTGGCGG GCAGCGCCCC ATGTGTCACC GCGCTGGCCA
661 TGGCCTTGTT CCTCTCCGCC GCTTCGTCCG CCGCCATCTG CGCGCTCCTG CACTCGTCGC
721 TGCAGAACGC CGTGTCGCCT CTGTACATGA AGATGTCGCG GTTGCTGGCG AGCGGCTTCC
781 GGCAGAGGAA GCACGCGTCC AAGAAATGCA CGTCGTGGTG CCCCGCTCCT CCCATGGATC
841 CTCGTGC
Predicted gene structure (within gDNA segment 33131 to 38426):
Exon 1 35016 35049 ( 34 n); cDNA 243 277 ( 35 n); score: 0.794
Intron 1 35050 36111 (1062 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80)
Exon 2 36112 36319 ( 208 n); cDNA 278 484 ( 207 n); score: 0.793
Intron 2 36320 38002 (1683 n); Pd: 0.000 (s: 0.74), Pa: 0.990 (s: 0)
Exon 3 38003 38032 ( 30 n); cDNA 485 514 ( 30 n); score: 0.633
MATCH 21326110+ SBtuc02-10-21.4286- 0.793 272 0.321 C
PGS_21326110+_SBtuc02-10-21.4286- (35016 35049,36112 36319,38003 38032)
Alignment (genomic DNA sequence = upper lines):
AGGGCTTGTT TAGTTCC-AA AAAATTTTGG GAAATGGACA TTGTAGCACT TTCGTTTGTA 35074
||| |||||| || |||| | ||||||||| ||||
AGGCCTTGTT TACTTCCTAG AAAATTTTGC AAAAT..... .......... .......... 277
TTTGACAAAT ATTGTCCAAT TATGGACTAA CTAGGCTCAA AAGATTCATC TCGTCAATTC 35134
.......... .......... .......... .......... .......... .......... 277
CGACCAAACT GTGTAATTAG TTTTTATTTT CGTCTATATT TAACACTCCA TGCATGCGTC 35194
.......... .......... .......... .......... .......... .......... 277
TAAAGATTCG ATGTGACGGA GAATATGAAA AATTTTACAA AATTTTTTCG GAAGTAAACA 35254
.......... .......... .......... .......... .......... .......... 277
AGGCCCTAGT ACTCGACTGC TACCGGGGAC GACGGTACGG TGGAAGCAGG CGCCTGTCGA 35314
.......... .......... .......... .......... .......... .......... 277
GCATCTCCAG TGCTAAATCG AACAAAACTG ACAAGGTTCG GTTGAGTGCA GTACGGTTTG 35374
.......... .......... .......... .......... .......... .......... 277
AGAGAGCTGC AGTGTGGCGT CGGTGTTTGC TCCAAACAAA CATTAAACAA ATTGGAAGTG 35434
.......... .......... .......... .......... .......... .......... 277
ACCCTGCCTA GGAGGTTTCA CACACAACAT TATCAATGGC TTGTCCTGTA TAAAGATTTT 35494
.......... .......... .......... .......... .......... .......... 277
TTTATTGAAA CAGTCACGGC ACGGTTTGGT GCTTGAGTTT GGTTCGCTTT TAGTTCTGAC 35554
.......... .......... .......... .......... .......... .......... 277
AACGAGCAGC CGAACCGTCT AGTGTTCTCG GTTCGATTTG CTTCTCCCTC GGTTCGATTC 35614
.......... .......... .......... .......... .......... .......... 277
TGCGATACAC TAGAGGTGCC CTTAGGCGTT GTTTAGATGC ATCAAAAACC CCAAACTTTA 35674
.......... .......... .......... .......... .......... .......... 277
CAAGATTCTC ATCACATCGA ATCTTGCAAC ACATGCATAG AACATTAAAT ATAGAAAAAA 35734
.......... .......... .......... .......... .......... .......... 277
AAGATAACTA ATTGCACAGT TTACCTGTAA ATCACGAGAC AAATCTTTTA AGCCTAGTTG 35794
.......... .......... .......... .......... .......... .......... 277
CTCTATGAAA GAACAATGTT TGTCAAATAA AAACAAAAAT GCTGCAGCAT CAAAATCCAA 35854
.......... .......... .......... .......... .......... .......... 277
AAAATTTTTG GATCTAAACA AGGCCTAAGT GCACCTTAAA AATTAAAAAA ATTTCAAGAT 35914
.......... .......... .......... .......... .......... .......... 277
TTTCTGTCAC ATCGAATCTT GCGATATATG CATGATTGCA TTAAATATAG TCAAAAATAA 35974
.......... .......... .......... .......... .......... .......... 277
AAATTAATTA CATAGCTTAC CTGTAAATCA CGAAATAAAT CTTTTAAATC TAGTTAGTTC 36034
.......... .......... .......... .......... .......... .......... 277
ATAATTAGAC AATATTTATA AAAAACAAAC GAAAGTGCTA CAATGGCCTT GTTTAGTTCA 36094
.......... .......... .......... .......... .......... .......... 277
CCCTGAAAAC CAAAAAGTTT TCAAGATTTC CCGTCACATC GAATCTTGTA ACACATGTAT 36154
||| || ||||| | |||||||||| ||||||| || |||| ||
.......... .......TTT TC-AGATTCC CCGTCACATC GAATCTTTAG ACGCATGCAT 319
GAAACATTAA ATATAGACGA AAACAAAAAC TAATTACACA GATTAGCTGA AAATCACGTG 36214
| | ||||| |||||||||| ||| |||||| ||||| |||| | || | || || | ||| |
GGAGTATTAA ATATAGACGA AAATAAAAAC TAATTGCACA GTTTGGTCGA AATTGACGAG 379
ACAAATTTTT TGATTCTAGT TAGTCCATGA TTAGATAATA TTTATCACAA ACAAACGAAA 36274
|| ||| ||| ||| ||||| || ||||||| ||||| |||| ||| | | | | ||||||||
ACGAATCTTT TGAGCCTAGT TACTCCATGA TTAGACAATA TTTGTTAAAT AAAAACGAAA 439
ATGCCACAGT ACCAAAAACT TTTCACTTTT CGGAACTAAA CAAGGCCAAT GTATCAAACC 36334
|||| ||||| | | | | |||| |||||||||| |||||
ATGCTACAGT GTCCATTTCC CAAAATTTTT CGGAACTAAA CAAGG..... .......... 484
AAAAAATTTT AGGGGCTGTT TGGTTCGTTG TTGAGTTCAG CCTGGCTTGT ATGCGGCAAC 36394
.......... .......... .......... .......... .......... .......... 484
CAGGCCCTGG CGGTCCAGGC CGAACTCATG CAGGCAGCCA TTGTTTGGTT GGTCGGTTGA 36454
.......... .......... .......... .......... .......... .......... 484
TTAGAGCCTG GTTGGGTGCA TCACTTGTTT GGTTACCCGT TGCTTTGCCT GCCTGCTGCA 36514
.......... .......... .......... .......... .......... .......... 484
TCAACTCTCT CATGCACGAG CCACAACGCA TGCTCATCCC AGCCTGGCCC GATAGAAACG 36574
.......... .......... .......... .......... .......... .......... 484
GAAGTGATCT GCGTTTCTGC GGGGCCTGGC TCAGCGAGGT GTTTTGTATG CGGGTGGCCT 36634
.......... .......... .......... .......... .......... .......... 484
GGCCCTGGCA GCCATACAAC ACACCAAACA CGAGATTCCT GCACCAGCGG ATGCATGCAC 36694
.......... .......... .......... .......... .......... .......... 484
GCGGGCATCA GGCCAACCAA ACACGCCCAG GCCCAGTCGC GTCCGTCCCC CAGTTTTCTG 36754
.......... .......... .......... .......... .......... .......... 484
GCCTTGGCCG TACGTGCCGC GTGCCCCTCT ACCGCGCGCT CCCTGTGCCA TGTCCCATAC 36814
.......... .......... .......... .......... .......... .......... 484
CAAACTCCCA TGTGAATGTG AATTGTGACC ACCATTCTTC GTCAGTCATT CACCCGCACC 36874
.......... .......... .......... .......... .......... .......... 484
CGCACGGCGC TACGCAACAA CAAAAGCAGG TCCGCTCGTC TCGTCTCCCT CCCTCCCGCG 36934
.......... .......... .......... .......... .......... .......... 484
GCTCGGCTCG GCTCACCTCA CCTCACTCCT CTTCGTGCGT CGCCTCGCTG CCGCGTCGGG 36994
.......... .......... .......... .......... .......... .......... 484
CCAGCGGGTG AGGCGTGACT GGGCTCTCTT CGGCGCGCGC ACCGAGGGAC GGCGGCGGCG 37054
.......... .......... .......... .......... .......... .......... 484
TCGATGGGGA AGCACATGCG CATCAAGACG GCGCCCAAGG GCAACCGTGC CCCCCTTCTC 37114
.......... .......... .......... .......... .......... .......... 484
GGCGACGGGG TAGGCCGCCC GCCGTAGGCG CAGGCTCCTA TTCGAATTTG GTTTCTGATG 37174
.......... .......... .......... .......... .......... .......... 484
ATTGCGCTCC GAATTTGGTT TCTGATCATC GAGCTGGTGC CTGCAGGAGA CGTCAAGGGG 37234
.......... .......... .......... .......... .......... .......... 484
GCTCACCGAC CTGGAAGAGG GCAGCAACGT CCAGGTTAGG CGCCCAGCCC CTGCCCTCCT 37294
.......... .......... .......... .......... .......... .......... 484
ATCCCTTCCT TTCTCCATCT GCCGCACAAG GACAAACCTC CCAATTACAA GCGCCGGCTG 37354
.......... .......... .......... .......... .......... .......... 484
CATAACTAAT CCTTGCCTTT TTTATCATTA TTTTGTACAT ACAATTGGAA TTCTCTCAGC 37414
.......... .......... .......... .......... .......... .......... 484
CAGCGAACGT CGGGTTCTGT CGGGTCATCA AACTTGTGAG TGAGCGCTTG TCTCTTCGAT 37474
.......... .......... .......... .......... .......... .......... 484
TTTTAGCTCT TTCTCTTGCG CTGATGTTGG TCATGCTGAA ACGGATGAGC ACGGGTTTGT 37534
.......... .......... .......... .......... .......... .......... 484
AGGCCAAGCA TGACGCCGGG AAGCTGGTCC TCGCCACTAT GGCGCTGCTC GTTGCCTCCC 37594
.......... .......... .......... .......... .......... .......... 484
TCAGCAACCT TCTCGTTGTA GGTACCTGCC ACTTGTTGGA AAGAAAAGCT ATTGATGCTA 37654
.......... .......... .......... .......... .......... .......... 484
ATGTTTGTTT TTTGTTATCT TTTTCACTTT TTGGAACAAG GATAGCTGCT AAGCCTTTCC 37714
.......... .......... .......... .......... .......... .......... 484
TGTCTTCATG AGGGCTTGAG CACAAGCATG CAGAAATCTG GTTCCTCTAT TAGCAATTAG 37774
.......... .......... .......... .......... .......... .......... 484
CATGTATGTT GATTTAAATT CAGCTAGTAC CTTGATGGAA TTGAAGTAAG TCGACTCTGT 37834
.......... .......... .......... .......... .......... .......... 484
AGATATTTAG AGGCTTCTGT TCAAACTGTT GTTAGTATGA ATCAGTGTCC AGTGATGAGT 37894
.......... .......... .......... .......... .......... .......... 484
AGAATACAAC CACTTTCAGG GCAATTGTTA TTTTCATTCT TAAAGAGCGT GGTCATCAAG 37954
.......... .......... .......... .......... .......... .......... 484
CATTGTTTTC ATGTTGTAAT GCATGGATCG TCTTGTGATG TCCTACAGCC GAAATATGGT 38014
|| ||| | |
.......... .......... .......... .......... ........CC TAAAGCTAGA 496
GGCAAGATAA TTGACATT 38032
| |||| || || |||
GAAAAGAAAA CTGCCATG 514
********************************************************************************
EST sequence 166 +strand (File: SPtuc02-10-22.3104+)
1 GCACGAGGCC TGCTTGGGCC TGTTATAGAG CCCACCAATG GACGATTCAA GAGACGCGTC
61 GGGTCCAAAG AAACAGAGGA TATTATATAT ATAAAGCAAA GAAAAGCACA TCCCTGACTA
121 GTCCGCGTGG GCCCCACTTC TTTCTCCGGC GCGACTCTCT CGCGCGCGCC TTTCTTTGCT
181 TGGGCCTTGT TTAGTTGTCA AAAATTTTTG CAAAATTTTT CATATTCTCT ATCACATCAA
241 ATTTTTAGAC GCATGCATGA AGTATTAAAT ATGGACGAAA ATAAAAACTA ATTACACCGT
301 TTGGTCGAAA TTGACGAGAC GAATCTTTTG AGTCTAGTTA ATACATAATT GAATAATATT
361 TGTCCAATAC AAACGAAAAT GGTACTATTC CTATTTTGCA AAATTTTTTG GAACTAAACA
421 AGGCCTTGCT GTTGCTGCGA CGACGACTGG GCGAGCGCTG ACACCCTTCG CCAGATCGGC
481 GCCGGCGACG AGCACCCGCC AGGAAAAATG GCCGAGCACC TCTTCAAAGA TAAATTTAAG
541 GTGACCAGGC TCGATCCTGA TGGCAAGAAG TTCGACAAAG TCACTCGTAT TGAAGCTACA
601 AGCGAGAATG AAATGTACAT GCAACTGGAT GTTGCTACTG AGGTCTATGC AATGAAGCTT
661 GGTGACACAT TCAACATGGT TTTAGCTCTC ACTCTCAACC TGGATGGATC AACAGACGCT
721 GGCTACTACA CACAGGCTGG AAGAAAAACT CTTGCTGACG ATTATGACTA CATCATGCAT
781 GGAAAGCTTT ACAAGATCTC AGAAGACAGT ACCAAAGACA GTAATGGCAA TTCATCTACT
841 AAAGTGGAGA TTTATGCATC TTTTGGTGGC CTCTTGATGA TACTTAGGGG TGATCCTTCC
901 TGTGCTGCTA GCTTTCAGCT GGATCAGAGG CTGTTTCTTC TTATAAAGAA GCCGTAAATA
961 TATTAGCAGA AAGGCTAGTT AGCTACCTTG TTGGTTGTCG TGCTACCCCC ACCATTCATG
1021 TACTCTCTCC ATGGTGGATC GATAAGAAAT GTCTTCTTCT TTTTTTGAGG AAATTAGAAA
1081 TGAAGCCTTG TTTAGTTCGC AAAAATTTTC AAGATTTTCC GTCACATCGA ATCTTTGGTC
1141 GCATGCAGGA GCATAAAATA GACAAAAATA AAA
Predicted gene structure (within gDNA segment 33503 to 36636):
Exon 1 35018 35047 ( 30 n); cDNA 184 213 ( 30 n); score: 0.800
Intron 1 35048 36108 (1061 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.70)
Exon 2 36109 36322 ( 214 n); cDNA 214 426 ( 213 n); score: 0.738
MATCH 21326110+ SPtuc02-10-22.3104+ 0.738 244 0.208 C
PGS_21326110+_SPtuc02-10-22.3104+ (35018 35047,36109 36322)
Alignment (genomic DNA sequence = upper lines):
GGCTTGTTTA GTTCCAAAAA ATTTTGGGAA ATGGACATTG TAGCACTTTC GTTTGTATTT 35077
| |||||||| ||| |||| ||||| | ||
GCCTTGTTTA GTTGTCAAAA ATTTTTGCAA .......... .......... .......... 213
GACAAATATT GTCCAATTAT GGACTAACTA GGCTCAAAAG ATTCATCTCG TCAATTCCGA 35137
.......... .......... .......... .......... .......... .......... 213
CCAAACTGTG TAATTAGTTT TTATTTTCGT CTATATTTAA CACTCCATGC ATGCGTCTAA 35197
.......... .......... .......... .......... .......... .......... 213
AGATTCGATG TGACGGAGAA TATGAAAAAT TTTACAAAAT TTTTTCGGAA GTAAACAAGG 35257
.......... .......... .......... .......... .......... .......... 213
CCCTAGTACT CGACTGCTAC CGGGGACGAC GGTACGGTGG AAGCAGGCGC CTGTCGAGCA 35317
.......... .......... .......... .......... .......... .......... 213
TCTCCAGTGC TAAATCGAAC AAAACTGACA AGGTTCGGTT GAGTGCAGTA CGGTTTGAGA 35377
.......... .......... .......... .......... .......... .......... 213
GAGCTGCAGT GTGGCGTCGG TGTTTGCTCC AAACAAACAT TAAACAAATT GGAAGTGACC 35437
.......... .......... .......... .......... .......... .......... 213
CTGCCTAGGA GGTTTCACAC ACAACATTAT CAATGGCTTG TCCTGTATAA AGATTTTTTT 35497
.......... .......... .......... .......... .......... .......... 213
ATTGAAACAG TCACGGCACG GTTTGGTGCT TGAGTTTGGT TCGCTTTTAG TTCTGACAAC 35557
.......... .......... .......... .......... .......... .......... 213
GAGCAGCCGA ACCGTCTAGT GTTCTCGGTT CGATTTGCTT CTCCCTCGGT TCGATTCTGC 35617
.......... .......... .......... .......... .......... .......... 213
GATACACTAG AGGTGCCCTT AGGCGTTGTT TAGATGCATC AAAAACCCCA AACTTTACAA 35677
.......... .......... .......... .......... .......... .......... 213
GATTCTCATC ACATCGAATC TTGCAACACA TGCATAGAAC ATTAAATATA GAAAAAAAAG 35737
.......... .......... .......... .......... .......... .......... 213
ATAACTAATT GCACAGTTTA CCTGTAAATC ACGAGACAAA TCTTTTAAGC CTAGTTGCTC 35797
.......... .......... .......... .......... .......... .......... 213
TATGAAAGAA CAATGTTTGT CAAATAAAAA CAAAAATGCT GCAGCATCAA AATCCAAAAA 35857
.......... .......... .......... .......... .......... .......... 213
ATTTTTGGAT CTAAACAAGG CCTAAGTGCA CCTTAAAAAT TAAAAAAATT TCAAGATTTT 35917
.......... .......... .......... .......... .......... .......... 213
CTGTCACATC GAATCTTGCG ATATATGCAT GATTGCATTA AATATAGTCA AAAATAAAAA 35977
.......... .......... .......... .......... .......... .......... 213
TTAATTACAT AGCTTACCTG TAAATCACGA AATAAATCTT TTAAATCTAG TTAGTTCATA 36037
.......... .......... .......... .......... .......... .......... 213
ATTAGACAAT ATTTATAAAA AACAAACGAA AGTGCTACAA TGGCCTTGTT TAGTTCACCC 36097
.......... .......... .......... .......... .......... .......... 213
TGAAAACCAA AAAGTTTTCA AGATTTCCCG TCACATCGAA TCTTGTAACA CATGTATGAA 36157
|| ||||| | ||| | ||||||| || | || || |||| |||||
.......... .AATTTTTC- ATATTCTCTA TCACATCAAA TTTTTAGACG CATGCATGAA 261
ACATTAAATA TAGACGAAAA CAAAAACTAA TTACACAGAT TAGCTGAAAA TCACGTGACA 36217
|||||||| | |||||||| ||||||||| |||||| | | | | |||| | ||| |||
GTATTAAATA TGGACGAAAA TAAAAACTAA TTACACCGTT TGGTCGAAAT TGACGAGACG 321
AATTTTTTGA TTCTAGTTAG TCCATGATTA GATAATATTT ATCACAAACA AACGAAAATG 36277
||| |||||| |||||||| | ||| ||| ||||||||| || | ||| ||||||||||
AATCTTTTGA GTCTAGTTAA TACATAATTG AATAATATTT GTCCAATACA AACGAAAATG 381
CCACAGTACC AAAAACTTTT CACTTTTCGG AACTAAACAA GGCCA 36322
|| | || | | |||| || |||||||||| ||||
GTACTATTCC TATTTTGCAA AATTTTTTGG AACTAAACAA GGCCT 426
********************************************************************************
EST sequence 91 +strand (File: SBtuc02-10-21.8114+)
1 GCACGAGGCT CCTCCCTCTT CTTCCTCCTT TGGGTCCTTC CCAGCCGCCG CCGGCCATGG
61 CCTCCCTCAC CGACCTCGTC AACCTCAGCC TCTCGGACAC CACCGAGAAG ATCATCGCCG
121 AGTACATATG GATCGGTGGA TCTGGCATGG ATCTCAGGAG CAAAGCCAGG GTAAGATAAA
181 AAGATTCCCT GCACTAGGAG GGGACGGTAT CCCGGGATAC TGTTTGTGGT GGCTCGTCAC
241 TACTCACTTA TCCTATCACT TATCTCTGAA GTCACCATCC GCTGAGCTGT TCTTTGGCTT
301 ATATACAAGA GCTCTGCTCA CCACTACCAC TGCAATTGAA TTTTTTTTTC TCTTCTGTTT
361 ACTTCCCAGA AAATTTTGCA AAATTTTTCA CATTCCCTGT CACATCGAAT CTTTAGACGC
421 ATGCATGGAG TATTAAATAT AGACGAAAAT AAAAACTAAT TGCATAGTTT GGTCGAAATT
481 AACGAGACGA ATCTTTTGAA CCTAGTTAGT ACATGATTGG ACAATATTTG TCAAATACAA
541 ACGAAAATGC TACGGTGTCC ATTTCCTAAA ATTTTTCAGA ACTAAACAAG GCCCTGATCT
601 CGTTGTGGTT GGTGCTGGTG CAGACC
Predicted gene structure (within gDNA segment 32703 to 36791):
Exon 1 35022 35049 ( 28 n); cDNA 356 384 ( 29 n); score: 0.786
Intron 1 35050 36111 (1062 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.76)
Exon 2 36112 36282 ( 171 n); cDNA 385 554 ( 170 n); score: 0.801
MATCH 21326110+ SBtuc02-10-21.8114+ 0.801 199 0.318 C
PGS_21326110+_SBtuc02-10-21.8114+ (35022 35049,36112 36282)
Alignment (genomic DNA sequence = upper lines):
TGTTTAGTT- CCAAAAAATT TTGGGAAATG GACATTGTAG CACTTTCGTT TGTATTTGAC 35080
|||||| || ||| |||||| ||| ||||
TGTTTACTTC CCAGAAAATT TTGCAAAAT. .......... .......... .......... 384
AAATATTGTC CAATTATGGA CTAACTAGGC TCAAAAGATT CATCTCGTCA ATTCCGACCA 35140
.......... .......... .......... .......... .......... .......... 384
AACTGTGTAA TTAGTTTTTA TTTTCGTCTA TATTTAACAC TCCATGCATG CGTCTAAAGA 35200
.......... .......... .......... .......... .......... .......... 384
TTCGATGTGA CGGAGAATAT GAAAAATTTT ACAAAATTTT TTCGGAAGTA AACAAGGCCC 35260
.......... .......... .......... .......... .......... .......... 384
TAGTACTCGA CTGCTACCGG GGACGACGGT ACGGTGGAAG CAGGCGCCTG TCGAGCATCT 35320
.......... .......... .......... .......... .......... .......... 384
CCAGTGCTAA ATCGAACAAA ACTGACAAGG TTCGGTTGAG TGCAGTACGG TTTGAGAGAG 35380
.......... .......... .......... .......... .......... .......... 384
CTGCAGTGTG GCGTCGGTGT TTGCTCCAAA CAAACATTAA ACAAATTGGA AGTGACCCTG 35440
.......... .......... .......... .......... .......... .......... 384
CCTAGGAGGT TTCACACACA ACATTATCAA TGGCTTGTCC TGTATAAAGA TTTTTTTATT 35500
.......... .......... .......... .......... .......... .......... 384
GAAACAGTCA CGGCACGGTT TGGTGCTTGA GTTTGGTTCG CTTTTAGTTC TGACAACGAG 35560
.......... .......... .......... .......... .......... .......... 384
CAGCCGAACC GTCTAGTGTT CTCGGTTCGA TTTGCTTCTC CCTCGGTTCG ATTCTGCGAT 35620
.......... .......... .......... .......... .......... .......... 384
ACACTAGAGG TGCCCTTAGG CGTTGTTTAG ATGCATCAAA AACCCCAAAC TTTACAAGAT 35680
.......... .......... .......... .......... .......... .......... 384
TCTCATCACA TCGAATCTTG CAACACATGC ATAGAACATT AAATATAGAA AAAAAAGATA 35740
.......... .......... .......... .......... .......... .......... 384
ACTAATTGCA CAGTTTACCT GTAAATCACG AGACAAATCT TTTAAGCCTA GTTGCTCTAT 35800
.......... .......... .......... .......... .......... .......... 384
GAAAGAACAA TGTTTGTCAA ATAAAAACAA AAATGCTGCA GCATCAAAAT CCAAAAAATT 35860
.......... .......... .......... .......... .......... .......... 384
TTTGGATCTA AACAAGGCCT AAGTGCACCT TAAAAATTAA AAAAATTTCA AGATTTTCTG 35920
.......... .......... .......... .......... .......... .......... 384
TCACATCGAA TCTTGCGATA TATGCATGAT TGCATTAAAT ATAGTCAAAA ATAAAAATTA 35980
.......... .......... .......... .......... .......... .......... 384
ATTACATAGC TTACCTGTAA ATCACGAAAT AAATCTTTTA AATCTAGTTA GTTCATAATT 36040
.......... .......... .......... .......... .......... .......... 384
AGACAATATT TATAAAAAAC AAACGAAAGT GCTACAATGG CCTTGTTTAG TTCACCCTGA 36100
.......... .......... .......... .......... .......... .......... 384
AAACCAAAAA GTTTTCAAGA TTTCCCGTCA CATCGAATCT TGTAACACAT GTATGAAACA 36160
||||| | | || || |||| |||||||||| | || ||| | ||| | |
.......... .TTTTC-ACA TTCCCTGTCA CATCGAATCT TTAGACGCAT GCATGGAGTA 432
TTAAATATAG ACGAAAACAA AAACTAATTA CACAGATTAG CTGAAAATCA CGTGACAAAT 36220
|||||||||| ||||||| || ||||||||| || || || | |||| | | || ||| |||
TTAAATATAG ACGAAAATAA AAACTAATTG CATAGTTTGG TCGAAATTAA CGAGACGAAT 492
TTTTTGATTC TAGTTAGTCC ATGATTAGAT AATATTTATC ACAAACAAAC GAAAATGCCA 36280
|||||| | |||||||| | |||||| || ||||||| || | | |||||| |||||||| |
CTTTTGAACC TAGTTAGTAC ATGATTGGAC AATATTTGTC AAATACAAAC GAAAATGCTA 552
CA 36282
|
CG 554
********************************************************************************
EST sequence 108 +strand (File: TAtuc02-12-22.10307+)
1 TCGGCACGAG GAACTGGGTA CCATCCTCAT CCAGAAGAAC ATACGTTGTG CCACACTTCA
61 GATATCCTAG CGGGAGTACT GGTTTCCGTA GATAAGACAG TCTGGTTGAT GCCAGCTGCA
121 TTTTGATAAT TGCATTGGTG AGGATGCGAT GGAATACTGT GCTACCATTG ACTTGATTGA
181 GTGACCACTG CGATTGCCAC GTGAGGGCCT ATGCATAAGA ATATAAGATG GATAAGAAAC
241 CAATATCAGG GCTTTGTATG CTTCAAACGG GAAGGTTAGG AAATATTACC GTCTTTTTGT
301 CGAATGAGTT CATAGCTGGA ATTGTCCTGC AAGATTGAAG CGAGATATTC CCAGAAGGGA
361 CATAGGTTTC TGAAATTTGA GCTAGGCCTT GTTTAGTTCC GAAAAAATTT CGGATTTCGG
421 CACTGTAGCA CTTTCGTTTG TTTGTGGTAA ATATTATCCA ATTATAGACT AACTATGGTC
481 AAAAGATTCG TCTCGCGATT TAGAGTCAAA CTGTGTGATT AGTTTTTGTT TTCGTCTATA
541 TTTAATGCTT CGTGCATATG CCGCAAGATT CGATGTGACA TGGAATCTTG AAAACTTTTT
601 GGG
Predicted gene structure (within gDNA segment 32427 to 35261):
Exon 1 33925 33939 ( 15 n); cDNA 318 332 ( 15 n); score: 0.667
Intron 1 33940 34049 ( 110 n); Pd: 0.000 (s: 0), Pa: 0.347 (s: 0)
Exon 2 34050 34064 ( 15 n); cDNA 333 347 ( 15 n); score: 0.800
Intron 2 34065 34605 ( 541 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.63)
Exon 3 34606 34859 ( 254 n); cDNA 348 603 ( 256 n); score: 0.744
MATCH 21326110+ TAtuc02-12-22.10307+ 0.744 284 0.471 C
PGS_21326110+_TAtuc02-12-22.10307+ (33925 33939,34050 34064,34606 34859)
Alignment (genomic DNA sequence = upper lines):
GTAATTGGAC TACACGTGTT CTATTTTCGA AGGGACAGCA AAAGATTTTG CTTTGCCATA 33984
| ||||| | | ||
GGAATTGTCC TGCAA..... .......... .......... .......... .......... 332
AATAATGTAA AGAGAATTTG ACCTTGATTA TAAGGAAAAA CATTTCCGAA AAAACATACA 34044
.......... .......... .......... .......... .......... .......... 332
ATTAGGATAT AAGCGCGATA CAACTTGAGT TAATAAATCA CGCACAACTT CGTTGGTCCA 34104
||| ||||| ||||
.....GATTG AAGCGAGATA .......... .......... .......... .......... 347
CTGACCATGC AAAGTAGAAA TACACAACTT CGGGCAAAAT AACGCCGGTT TCGAGGTTTG 34164
.......... .......... .......... .......... .......... .......... 347
ATACATAGTC TTTTTAGGTG CCTCCGTGGT GATCCAGGAA GAGTTCACCA ACCTAGAGAT 34224
.......... .......... .......... .......... .......... .......... 347
CTTAGAAGCA ATGGGAGTCT AAAGATCAAA TAACTAGACC GATAATCTAA TCACTCAGCA 34284
.......... .......... .......... .......... .......... .......... 347
CTTCAACCCG CCTAAGAGAG CAACACTATA AGCGTGATAT GTGTCTATAT TCTTCATTTT 34344
.......... .......... .......... .......... .......... .......... 347
GAATTTTGGC TTCAAGAAAG CTAAAAAAAA CCCAAAAGCA CCTGGGAGCC CGTGTCTATC 34404
.......... .......... .......... .......... .......... .......... 347
TCCGCCAACA TCAGGAAAAT GTTGACATTT TGGATGGAAC TAAATACACC CATAAAAAAT 34464
.......... .......... .......... .......... .......... .......... 347
GGTATTTTGC ATTTCATCTT TCAAAGTACT TGGCATTTTG TATTTTGCAT TCCATGGAAA 34524
.......... .......... .......... .......... .......... .......... 347
ACTAAACACA CCCCTATTTT AGTATGCGTG CATATATAAA TGTTTACGTC TGTGTTACCA 34584
.......... .......... .......... .......... .......... .......... 347
CAAAAGTAAA CATCAAAATA GTTTCC-TAT GTGACATGGG TCATCACACC AATGATCAAG 34643
|| || | | ||||| || | || | ||| | ||
.......... .......... .TTCCCAGAA GGGACATAGG T-TTCTGAAA TTTGAGCTAG 385
GCCTTGTTTA ATT-CAAAAA AATTTGCAAA ACAGGCACTG TAGCACTTTC GTTTGTATTT 34702
|||||||||| || | |||| ||||| | ||||||| |||||||||| |||||| | |
GCCTTGTTTA GTTCCGAAAA AATTTCGGAT TTCGGCACTG TAGCACTTTC GTTTGTTTGT 445
GACAAATATT GTCTAATCAT AGACTAACTA GGCTCAAAAG ATTCGTCTCG GCAATTCCGA 34762
| ||||||| || ||| || |||||||||| | ||||||| ||||||||| || ||| ||
GGTAAATATT ATCCAATTAT AGACTAACTA TGGTCAAAAG ATTCGTCTC- GCGATTTAGA 504
-CCAAACTAT GCAATTAGTT TTTATTTTTG TCTATATTTA ATACTCCATG CATATGTCTA 34821
|||||| | | ||||||| ||| |||| | |||||||||| || || | || |||||| |
GTCAAACTGT GTGATTAGTT TTTGTTTTCG TCTATATTTA ATGCTTCGTG CATATGCCGC 564
AAGATTCGAT GTGACGGAGA AT-TTGAAAA ATTTTGCAA 34859
|||||||||| ||||| || || ||||||| ||||
AAGATTCGAT GTGACATGGA ATCTTGAAAA CTTTTTGGG 603
********************************************************************************
EST sequence 270 -strand (File: 9856377-)
1 ACAACAATGT TGTTAATATT TTGTATAAAT CTAATCAAAT CTAAGAAAGT TTGACGGATA
61 CAAATACCAT AGCGACCCTT ATTTAAACAC AGAGAGTACA ATCCTACAAC AGTATATAGA
121 TACTGCAGTG ATGAGTCAGT GACTGGGATG ATGGTAGAAG TGTAGAACCC ATATGTCTGC
181 CACTTGGAAG GAAAAAAAAA CTATCTTGGA GTTGTGACCG ATATGGTCAC ATCATTGATA
241 CTGCGGCCTT GTTTAGTTCC GAAAACTTTT CAGTTTTCGG AACTGTAACA CTTTCGTTTG
301 TTTGTGATAA ATATTGTCCA ATCATATACT AACTACAGTC AA
Predicted gene structure (within gDNA segment 33480 to 35494):
Exon 1 33896 33924 ( 29 n); cDNA 192 220 ( 29 n); score: 0.621
Intron 1 33925 34618 ( 694 n); Pd: 0.608 (s: 0), Pa: 0.000 (s: 0.65)
Exon 2 34619 34739 ( 121 n); cDNA 221 342 ( 122 n); score: 0.711
MATCH 21326110+ 9856377- 0.711 150 0.439 C
PGS_21326110+_9856377- (33896 33924,34619 34739)
Alignment (genomic DNA sequence = upper lines):
AAAAATAAAC TTGTATTGTC ATGTGCCAGG TAATTGGACT ACACGTGTTC TATTTTCGAA 33955
||||| |||| | | | |||| | |
AAAAAAAAAC TATCTTGGAG TTGTGACCG. .......... .......... .......... 220
GGGACAGCAA AAGATTTTGC TTTGCCATAA ATAATGTAAA GAGAATTTGA CCTTGATTAT 34015
.......... .......... .......... .......... .......... .......... 220
AAGGAAAAAC ATTTCCGAAA AAACATACAA TTAGGATATA AGCGCGATAC AACTTGAGTT 34075
.......... .......... .......... .......... .......... .......... 220
AATAAATCAC GCACAACTTC GTTGGTCCAC TGACCATGCA AAGTAGAAAT ACACAACTTC 34135
.......... .......... .......... .......... .......... .......... 220
GGGCAAAATA ACGCCGGTTT CGAGGTTTGA TACATAGTCT TTTTAGGTGC CTCCGTGGTG 34195
.......... .......... .......... .......... .......... .......... 220
ATCCAGGAAG AGTTCACCAA CCTAGAGATC TTAGAAGCAA TGGGAGTCTA AAGATCAAAT 34255
.......... .......... .......... .......... .......... .......... 220
AACTAGACCG ATAATCTAAT CACTCAGCAC TTCAACCCGC CTAAGAGAGC AACACTATAA 34315
.......... .......... .......... .......... .......... .......... 220
GCGTGATATG TGTCTATATT CTTCATTTTG AATTTTGGCT TCAAGAAAGC TAAAAAAAAC 34375
.......... .......... .......... .......... .......... .......... 220
CCAAAAGCAC CTGGGAGCCC GTGTCTATCT CCGCCAACAT CAGGAAAATG TTGACATTTT 34435
.......... .......... .......... .......... .......... .......... 220
GGATGGAACT AAATACACCC ATAAAAAATG GTATTTTGCA TTTCATCTTT CAAAGTACTT 34495
.......... .......... .......... .......... .......... .......... 220
GGCATTTTGT ATTTTGCATT CCATGGAAAA CTAAACACAC CCCTATTTTA GTATGCGTGC 34555
.......... .......... .......... .......... .......... .......... 220
ATATATAAAT GTTTACGTCT GTGTTACCAC AAAAGTAAAC ATCAAAATAG TTTCCTATGT 34615
.......... .......... .......... .......... .......... .......... 220
GACATGGGTC ATCACACCAA TGAT-C-AAG GCCTTGTTTA ATTCAAAAAA ATTTGCAAA- 34672
|| | ||||| || |||| | | |||||||||| ||| |||| ||| ||
...AT--ATG GTCACATCAT TGATACTGCG GCCTTGTTTA GTTCCGAAAA CTTTTCAGTT 275
ACAGGCACTG TAGCACTTTC GTTTGTATTT GACAAATATT GTCTAATCAT AGACTAACTA 34732
|| |||| || ||||||| |||||| | | || ||||||| ||| |||||| | ||||||||
TTCGGAACTG TAACACTTTC GTTTGTTTGT GATAAATATT GTCCAATCAT ATACTAACTA 335
GGCTCAA 34739
||||
CAGTCAA 342
********************************************************************************
EST sequence 174 +strand (File: 13587489+)
1 ATCCAGACAG AAGAGGAGTT GACACCGATC CGCGTCGGCG AGGAGGGCCA AGTTCCGCCC
61 GACTTTCTTG GAGCGGAACC TGAGCCCACG CTCGGGAGGC GCGCCACATG CCAGCGCGCC
121 CTATCCCGGA GGCCGGAAAG GAGGAAGACG CCCGTGGCTC TTACGGATTC CCCCGGCTCC
181 CCTGCTCTGC TCTGTGGCTC CGACACGTCG CCGGTCCCAG CCCCGAGGTT AGTGGCCTTG
241 AGATTTTGCT TTGCTTTTGA GATTTGAACT GAGGCCTTGT TCAGATGTGA AAAAATTTTG
301 GATTTCGCTA CTGTAGCACT TTCGTTTGTT TGTGGTAAAT ATTGTCCAAT CATAGACTAA
361 CTAGGATCAA AAGATTCGTC TCGCGATTTA CAGTCAAACT GTGTGATTAG TTTTTATTTT
421 CGTCTATATT TAATGTTTCA TGCATATGCC GCAAGATTTC GATGTGACAG AAAATT
Predicted gene structure (within gDNA segment 33288 to 36029):
Exon 1 33957 33990 ( 34 n); cDNA 234 264 ( 31 n); score: 0.647
Intron 1 33991 34635 ( 645 n); Pd: 0.160 (s: 0), Pa: 0.000 (s: 0.62)
Exon 2 34636 34844 ( 209 n); cDNA 265 476 ( 212 n); score: 0.785
MATCH 21326110+ 13587489+ 0.785 243 0.511 C
PGS_21326110+_13587489+ (33957 33990,34636 34844)
Alignment (genomic DNA sequence = upper lines):
GGACAGCAAA AGATTTTGCT TTGCCATAAA TAATGTAAAG AGAATTTGAC CTTGATTATA 34016
|| | | |||||||||| |||| | | | |
GG-C--CTTG AGATTTTGCT TTGCTTTTGA GATT...... .......... .......... 264
AGGAAAAACA TTTCCGAAAA AACATACAAT TAGGATATAA GCGCGATACA ACTTGAGTTA 34076
.......... .......... .......... .......... .......... .......... 264
ATAAATCACG CACAACTTCG TTGGTCCACT GACCATGCAA AGTAGAAATA CACAACTTCG 34136
.......... .......... .......... .......... .......... .......... 264
GGCAAAATAA CGCCGGTTTC GAGGTTTGAT ACATAGTCTT TTTAGGTGCC TCCGTGGTGA 34196
.......... .......... .......... .......... .......... .......... 264
TCCAGGAAGA GTTCACCAAC CTAGAGATCT TAGAAGCAAT GGGAGTCTAA AGATCAAATA 34256
.......... .......... .......... .......... .......... .......... 264
ACTAGACCGA TAATCTAATC ACTCAGCACT TCAACCCGCC TAAGAGAGCA ACACTATAAG 34316
.......... .......... .......... .......... .......... .......... 264
CGTGATATGT GTCTATATTC TTCATTTTGA ATTTTGGCTT CAAGAAAGCT AAAAAAAACC 34376
.......... .......... .......... .......... .......... .......... 264
CAAAAGCACC TGGGAGCCCG TGTCTATCTC CGCCAACATC AGGAAAATGT TGACATTTTG 34436
.......... .......... .......... .......... .......... .......... 264
GATGGAACTA AATACACCCA TAAAAAATGG TATTTTGCAT TTCATCTTTC AAAGTACTTG 34496
.......... .......... .......... .......... .......... .......... 264
GCATTTTGTA TTTTGCATTC CATGGAAAAC TAAACACACC CCTATTTTAG TATGCGTGCA 34556
.......... .......... .......... .......... .......... .......... 264
TATATAAATG TTTACGTCTG TGTTACCACA AAAGTAAACA TCAAAATAGT TTCCTATGTG 34616
.......... .......... .......... .......... .......... .......... 264
ACATGGGTCA TCACACCAAT GATC-AAGGC CTTGTTTA-A T-TCAAAAAA ATTTGCAAAA 34673
| || | |||| |||||| | | | | |||||| |||| |
.......... .........T GAACTGAGGC CTTGTTCAGA TGTGAAAAAA TTTTGGATTT 305
CAGGCACTGT AGCACTTTCG TTTGTATTTG ACAAATATTG TCTAATCATA GACTAACTAG 34733
| | ||||| |||||||||| ||||| | || |||||||| || ||||||| ||||||||||
C-GCTACTGT AGCACTTTCG TTTGTTTGTG GTAAATATTG TCCAATCATA GACTAACTAG 364
GCTCAAAAGA TTCGTCTCGG CAATTCCGAC CAAACTATGC AATTAGTTTT TATTTTTGTC 34793
| |||||||| ||||||||| | || | |||||| || ||||||||| |||||| |||
GATCAAAAGA TTCGTCTCGC GATTTACAGT CAAACTGTGT GATTAGTTTT TATTTTCGTC 424
TATATTTAAT ACTCCATGCA TATGTCTAAA GA-TTCGATG TGACGGAGAA TT 34844
|||||||||| | |||||| |||| | || || ||||||| |||| || || ||
TATATTTAAT GTTTCATGCA TATGCCGCAA GATTTCGATG TGACAGAAAA TT 476
********************************************************************************
EST sequence 180 +strand (File: 11678487+)
1 GCACGAGGCA AAAATAAAAC TTAATTTAGT GGACTTGAAC TTGTGTGGTC TATAGTTCCC
61 TCGAGTTACT TCATTCGCTT TCCTTGCTTC CTTCTATGAA GATTTCATGC AGCCTGCAAC
121 TACATGGGAA AGATGTCTGT TTAAAATTGA ATCCAATAAT ATGATATTTC TACTAATTGA
181 AAGCAGCCAA CACATGTTTT TTTACTGGTC TGAGGTGCTT AATAAGATCC TCTGTTATAT
241 TTTTTGGGGC CAGGCAAGTT AAGGCCTTGT TTAGTTTCAA AAAATTTTAC AAAATAACAA
301 TAGTACCACT TTCATTTGTA TTTGACAAAT ATTATCCAAT CATATACTAA TTAGACTCAA
361 AAGATTCGTC TCGTCAATTC CGACCAAATT GTGCAATTAG TTTTTATTTT CATATATATT
421 TAATACTTCA TGCATGCGTC TAAAGATTTG ATGTGACAGA GAATCTGAAA AATTTTGCAA
481 AATTTTCTGG GGAACTAAAC AATGCCTTAG AGCATCTCCA ACAACTTGGT ATTTCAACAT
541 GCTATCCTAC CAAATTTGCT ANAAGCATAA AAATCCTCCT CCAACAACTC CTTATCTCAA
601 CTTGCTAAAT TTCCCA
Predicted gene structure (within gDNA segment 33035 to 36347):
Exon 1 33925 33968 ( 44 n); cDNA 219 258 ( 40 n); score: 0.636
Intron 1 33969 34638 ( 670 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.73)
Exon 2 34639 34913 ( 275 n); cDNA 259 533 ( 275 n); score: 0.818
MATCH 21326110+ 11678487+ 0.818 319 0.518 C
PGS_21326110+_11678487+ (33925 33968,34639 34913)
Alignment (genomic DNA sequence = upper lines):
GTAATTGGAC TACACGTGTT CTATTTTCGA AGGGACAGCA AAAGATTTTG CTTTGCCATA 33984
|||| || | | | |||| |||||| ||| ||| |||
TTAATAAGA- TCCTC-TGTT ATATTTT-TT GGGGCCAG-G CAAG...... .......... 258
AATAATGTAA AGAGAATTTG ACCTTGATTA TAAGGAAAAA CATTTCCGAA AAAACATACA 34044
.......... .......... .......... .......... .......... .......... 258
ATTAGGATAT AAGCGCGATA CAACTTGAGT TAATAAATCA CGCACAACTT CGTTGGTCCA 34104
.......... .......... .......... .......... .......... .......... 258
CTGACCATGC AAAGTAGAAA TACACAACTT CGGGCAAAAT AACGCCGGTT TCGAGGTTTG 34164
.......... .......... .......... .......... .......... .......... 258
ATACATAGTC TTTTTAGGTG CCTCCGTGGT GATCCAGGAA GAGTTCACCA ACCTAGAGAT 34224
.......... .......... .......... .......... .......... .......... 258
CTTAGAAGCA ATGGGAGTCT AAAGATCAAA TAACTAGACC GATAATCTAA TCACTCAGCA 34284
.......... .......... .......... .......... .......... .......... 258
CTTCAACCCG CCTAAGAGAG CAACACTATA AGCGTGATAT GTGTCTATAT TCTTCATTTT 34344
.......... .......... .......... .......... .......... .......... 258
GAATTTTGGC TTCAAGAAAG CTAAAAAAAA CCCAAAAGCA CCTGGGAGCC CGTGTCTATC 34404
.......... .......... .......... .......... .......... .......... 258
TCCGCCAACA TCAGGAAAAT GTTGACATTT TGGATGGAAC TAAATACACC CATAAAAAAT 34464
.......... .......... .......... .......... .......... .......... 258
GGTATTTTGC ATTTCATCTT TCAAAGTACT TGGCATTTTG TATTTTGCAT TCCATGGAAA 34524
.......... .......... .......... .......... .......... .......... 258
ACTAAACACA CCCCTATTTT AGTATGCGTG CATATATAAA TGTTTACGTC TGTGTTACCA 34584
.......... .......... .......... .......... .......... .......... 258
CAAAAGTAAA CATCAAAATA GTTTCCTATG TGACATGGGT CATCACACCA ATGATCAAGG 34644
| ||||
.......... .......... .......... .......... .......... ....TTAAGG 264
CCTTGTTTA- ATTCAAAAAA ATTTGCAAAA CAGGCACTGT AGCACTTTCG TTTGTATTTG 34703
||||||||| ||||||||| ||| ||||| | | || | ||||||| ||||||||||
CCTTGTTTAG TTTCAAAAAA TTTTACAAAA TAACAATAGT ACCACTTTCA TTTGTATTTG 324
ACAAATATTG TCTAATCATA GACTAACTAG GCTCAAAAGA TTCGTCTCGG CAATTCCGAC 34763
||||||||| || ||||||| ||||| ||| ||||||||| ||||||||| ||||||||||
ACAAATATTA TCCAATCATA TACTAATTAG ACTCAAAAGA TTCGTCTCGT CAATTCCGAC 384
CAAACTATGC AATTAGTTTT TATTTTTGTC TATATTTAAT ACTCCATGCA TATGTCTAAA 34823
|||| | ||| |||||||||| |||||| | |||||||||| ||| |||||| | |||||||
CAAATTGTGC AATTAGTTTT TATTTTCATA TATATTTAAT ACTTCATGCA TGCGTCTAAA 444
GATTCGATGT GACGGAGAAT TTGAAAAATT TTGC-AAATT TT-TTGGGAA CTAAACAAGG 34881
|||| ||||| ||| |||||| ||||||||| |||| ||||| || | ||||| |||||||| |
GATTTGATGT GACAGAGAAT CTGAAAAATT TTGCAAAATT TTCTGGGGAA CTAAACAATG 504
CCCAAGCTGC AAATCCCTAA TCACTCGTCA TT 34913
|| || || ||| | || ||| | | ||
CCTTAG-AGC --ATCTCCAA CAACTTGGTA TT 533
********************************************************************************
EST sequence 37 +strand (File: 8548754+)
1 GTCATGAATA CCAGACATTT TGGACAAAGA AAACAAAACG TCATGTATTC ATGACTGGAT
61 GCAGCGGCGG ACCCAGAAAT GGACCAAGAG GGGGGCTAAA TAACATAGGC TAAATTTTTT
121 TTTGCTCGCT CAATCCAGTA CACTAAGGCC TTGTTTAGTT CTAATTTTTT TTGCAAAATA
181 GGAATAGTAG CATTTTGGTT TGTATTTGAC AAATATTGTC TGATCATGGA CTAACTAGGC
241 TCAAAAGATT CATCTCGCGG TAAACTGTGT AATTAGTTAT TTTTTTATTT ATATTTAGTG
301 CTTCATGCAT GTGCCGCAAG ATTCAATGTG ATGGGGAATC TGAGAAATTT TGCAAAATAT
361 TTTGGGAACT AAACAACGCT
Predicted gene structure (within gDNA segment 33975 to 35971):
Exon 1 34641 34883 ( 243 n); cDNA 145 380 ( 236 n); score: 0.794
MATCH 21326110+ 8548754+ 0.794 243 0.639 C
PGS_21326110+_8548754+ (34641 34883)
Alignment (genomic DNA sequence = upper lines):
AAGGCCTTGT TTAATTC-AA AAAAATTTGC AAAACAGGCA CTGTAGCACT TTCGTTTGTA 34699
|||||||||| ||| ||| || ||||| |||| ||| | |||||| | || |||||||
AAGGCCTTGT TTAGTTCTAA TTTTTTTTGC AAAATAGGAA TAGTAGCATT TTGGTTTGTA 204
TTTGACAAAT ATTGTCTAAT CATAGACTAA CTAGGCTCAA AAGATTCGTC TCGGCAATTC 34759
|||||||||| ||||||| || ||| |||||| |||||||||| ||||||| || || || |
TTTGACAAAT ATTGTCTGAT CATGGACTAA CTAGGCTCAA AAGATTCATC TC-GCGG-T- 261
CGACCAAACT ATGCAATTAG TTTTTATTTT TGTCTATATT TAATACTCCA TGCATATGTC 34819
||||| || |||||| || || |||| | | |||||| || | || || ||||| || |
-----AAACT GTGTAATTAG TTATT-TTTT TATTTATATT TAGTGCTTCA TGCATGTGCC 315
TAAAGATTCG ATGTGACGGA GAATTTGAAA AATTTTGC-A AATTTTTTGG GAACTAAACA 34878
||||||| |||||| || |||| ||| | |||||||| | ||| |||||| ||||||||||
GCAAGATTCA ATGTGATGGG GAATCTGAGA AATTTTGCAA AATATTTTGG GAACTAAACA 375
AGGCC 34883
| ||
ACGCT 380
********************************************************************************
EST sequence 101 +strand (File: SBtuc02-10-21.8717+)
1 AAGCCTTGTT TAGATCCGGA AAATGTTTAA ATTATAACAC TATAGCATTT TCGTTTTTAT
61 TTGACAAAAG TTATCCAATC ATAGAGTAAT TTGACTTAAA AGATTCGTCT CGCGATTTAC
121 AGACAAATTA TGTAATTAGT TTTTATTTTT ATCTATATTT AATACTCTAT ATATATACCG
181 CAAGATTCGA TTTAACGAGA AATCTTGAAA ATGTTTTGGT TTTCTTAAAA AAAAACTAGA
241 CCCAAATATA AAAGTCCAAC CCCGGCGCGT GCACTGCAAA CTTGTCTTGG TTGTACCGCC
301 CCGGCCCCGC GCACCACGAC TCCGCCCACG CGGCCACGCC ACTCGACGCG ACCGAGACCA
361 GCCAGCGCGA ACTCCTCCCA ACTGCAACTC CTCCCAGACG CCCGCCGGCA GTTGGGCGCC
421 GCACAGCACA GCGAGCCTGC CAGTCAAACC GAGGCGGCGA CGAACGCAGG CAGGCAGCGC
481 GGGGGCGGGC CCGGCGGTGC CGGTGTGAAT GCGGGCGGCG CGATACCAGG CGCCGAGCGA
541 TCTGTCCCTG TGACGGCACG GGGCACGGCA GGATGGGCGA GGCGACGGGC CACGGTGACG
601 GCGTCGGCGT CGGCGTCGAC CTCTCGGGCG CCGAGATCCG CGGGGGCCTC GAGGATCGCA
661 ACCCGCCCAT CTTCCTCCCG CGCCAGCCCG CCGCGTCGCC GCTCCTCGCC CTCGACATCG
721 GAGGGACTCT GATCAAGCTG GTGTACACGG CGAGCTGCGG CGGCGGGGCC GACGGGGCGG
781 ACCTGCGCTT CGCCAAGTTC GAGAGGCGAC G
Predicted gene structure (within gDNA segment 33953 to 38332):
Exon 1 34642 34900 ( 259 n); cDNA 1 259 ( 259 n); score: 0.714
Intron 1 34901 35507 ( 607 n); Pd: 0.000 (s: 0.56), Pa: 0.913 (s: 0)
Exon 2 35508 35517 ( 10 n); cDNA 260 269 ( 10 n); score: 0.700
MATCH 21326110+ SBtuc02-10-21.8717+ 0.714 269 0.332 C
PGS_21326110+_SBtuc02-10-21.8717+ (34642 34900,35508 35517)
Alignment (genomic DNA sequence = upper lines):
AGGCCTTGTT TAATTCAAAA AAATTTGCAA AACA-GGCAC TGTAGCACTT TCGTTTGTAT 34700
| |||||||| || || | |||| | || | | ||| | ||||| || |||||| |||
AAGCCTTGTT TAGATCCGGA AAATGTTTAA ATTATAACAC TATAGCATTT TCGTTTTTAT 60
TTGACAAATA TTGTCTAATC ATAGACTAAC TAGGCTCAAA AGATTCGTCT CGGCAATTCC 34760
|||||||| || || |||| ||||| ||| | | || ||| |||||||||| || | || |
TTGACAAAAG TTATCCAATC ATAGAGTAAT TTGACTTAAA AGATTCGTCT CGCGATTTAC 120
GACCAAACTA TGCAATTAGT TTTTATTTTT GTCTATATTT AATACTCCAT GCATATGTCT 34820
|||| || || ||||||| |||||||||| ||||||||| ||||||| || |||| |
AGACAAATTA TGTAATTAGT TTTTATTTTT ATCTATATTT AATACTCTAT ATATATACCG 180
AAAGATTCGA TGTGACGGAG AATTTGAAAA ATTTTGCAAA TTTTTTGGGA ACTAAACAAG 34880
||||||||| | | ||| ||| | ||| || || |||| | | | |||| ||
CAAGATTCGA TTTAACGAGA AATCTTGAAA ATGTT-TTGG TTTTCTTAAA AAAAAACTAG 239
GCCCAAGCTG CAAATCCCTA ATCACTCGTC ATTCTCATAA ATAAAGCTGA AAAAACTAAA 34940
||||| ||| || |
ACCCAAATAT AAAAGTCCAA .......... .......... .......... .......... 259
TCCAAGTGGG GCACGCACTT GGACTTTGGC CTCTTGGACT TGAGTGGGCG ACACGCCGGA 35000
.......... .......... .......... .......... .......... .......... 259
TCGGCACCGG CACCTAGGGC TTGTTTAGTT CCAAAAAATT TTGGGAAATG GACATTGTAG 35060
.......... .......... .......... .......... .......... .......... 259
CACTTTCGTT TGTATTTGAC AAATATTGTC CAATTATGGA CTAACTAGGC TCAAAAGATT 35120
.......... .......... .......... .......... .......... .......... 259
CATCTCGTCA ATTCCGACCA AACTGTGTAA TTAGTTTTTA TTTTCGTCTA TATTTAACAC 35180
.......... .......... .......... .......... .......... .......... 259
TCCATGCATG CGTCTAAAGA TTCGATGTGA CGGAGAATAT GAAAAATTTT ACAAAATTTT 35240
.......... .......... .......... .......... .......... .......... 259
TTCGGAAGTA AACAAGGCCC TAGTACTCGA CTGCTACCGG GGACGACGGT ACGGTGGAAG 35300
.......... .......... .......... .......... .......... .......... 259
CAGGCGCCTG TCGAGCATCT CCAGTGCTAA ATCGAACAAA ACTGACAAGG TTCGGTTGAG 35360
.......... .......... .......... .......... .......... .......... 259
TGCAGTACGG TTTGAGAGAG CTGCAGTGTG GCGTCGGTGT TTGCTCCAAA CAAACATTAA 35420
.......... .......... .......... .......... .......... .......... 259
ACAAATTGGA AGTGACCCTG CCTAGGAGGT TTCACACACA ACATTATCAA TGGCTTGTCC 35480
.......... .......... .......... .......... .......... .......... 259
TGTATAAAGA TTTTTTTATT GAAACAGTCA CGGCACG 35517
| |||| ||
.......... .......... .......CCC CGGCGCG 269
********************************************************************************
EST sequence 172 +strand (File: 13587505+)
1 TAAACTCCAC GGGTTTGCAG TGCCGACGCC GGGGTTCGCC AATCTTGAGG GCAACACAAT
61 CTATTCAGTG AGCAGCAAGG ATGTGAACAG CAATAGGCGT CACACTCCCA CCACGGTGAA
121 CTACAGCGTG TCGGCATTTA GCCTTGAGAG CCGTATCTCC AAGAAACTTG TGTGCCTGCT
181 CAACGGCCGG GAGATGGCGA AGCGTGGTGA GACGCCATCG TGGATCGTAC CGAGCTTGGA
241 TGAAGGCTGA CTCTGCAGAG CTTGGACATC ATCATTATTG TGGAATCAGT GTTGATATAT
301 GGCTCTAGGT AAGGTAATTT ATTCGGGCCT TGTTTAGTTC CAAAATTTTT TACAAAATCG
361 ATACTGTTGC ACTTTCGTTT GTATTTGACA AAACTTGTCC GATCATGGAC TAACTAGGCT
421 CAAA
Predicted gene structure (within gDNA segment 32545 to 35045):
Exon 1 34644 34740 ( 97 n); cDNA 327 424 ( 98 n); score: 0.825
MATCH 21326110+ 13587505+ 0.825 97 0.229 C
PGS_21326110+_13587505+ (34644 34740)
Alignment (genomic DNA sequence = upper lines):
GCCTTGTTTA ATT-CAAAAA AATTTGCAAA ACAGGCACTG TAGCACTTTC GTTTGTATTT 34702
|||||||||| || ||||| ||| |||| | | |||| | |||||||| ||||||||||
GCCTTGTTTA GTTCCAAAAT TTTTTACAAA ATCGATACTG TTGCACTTTC GTTTGTATTT 386
GACAAATATT GTCTAATCAT AGACTAACTA GGCTCAAA 34740
|||||| || ||| ||||| ||||||||| ||||||||
GACAAAACTT GTCCGATCAT GGACTAACTA GGCTCAAA 424
********************************************************************************
EST sequence 164 +strand (File: SPtuc02-10-22.2789+)
1 GCACGAGGAT TTTTCTTTTT TTGGTTACTG TAGCATTTCG TTTTTATTTG ACAAACATGT
61 GTCCAATCAC GGAGTAACTA CGCTCAAAAG ATTCATCTCA CAAATTACAG GTAAACTGTG
121 CAATTAGTTT TTATTTTCGT CTATATTTAA TGCTCCATGC ATGCGACCAA AGATTCGATG
181 TGACGAGGAA TCTTGAAAAT TTTTGCGAAC TAAACAAAGC CTCAGTCTGT TCTTGGTCAT
241 TCTTTTTTCA AAGCTGATGA GCTAAAGATT CACTAGTAAC TTCTAATATA TATACTACTA
301 TCCACGGTTA CGATTTGATG TTCCTGGTTT TCTTGCAATG AGCTAATCAA AGATTTGATC
361 TTTTTCTTGC AAATGCAACG GAAGCAGCGC GCATTATGAG GTGTGGTGGT GTGGGATGGG
421 CGATGGCCTG GGCCTGTGCA GATGAAGGAG CGACAGCGCT GGCGGCCTGA GGAAGACGCC
481 GTCCTGCGCG CGTACGTCCG GCAGTACGGC CCGCGCGAGT GGCACCTGGT GTCGCAGCGC
541 ATGA
Predicted gene structure (within gDNA segment 34404 to 37312):
Exon 1 35054 35216 ( 163 n); cDNA 27 189 ( 163 n); score: 0.847
Intron 1 35217 35848 ( 632 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0)
Exon 2 35849 35884 ( 36 n); cDNA 190 226 ( 37 n); score: 0.778
PPA cDNA 22 10
MATCH 21326110+ SPtuc02-10-22.2789+ 0.847 199 0.366 C
PGS_21326110+_SPtuc02-10-22.2789+ (35054 35216,35849 35884)
Alignment (genomic DNA sequence = upper lines):
ATTGTAGCAC TTTCGTTTGT ATTTGACAAA TAT-TGTCCA ATTATGGACT AACTAGGCTC 35112
| ||||||| |||||||| | |||||||||| || |||||| || | ||| | ||||| ||||
ACTGTAGCA- TTTCGTTTTT ATTTGACAAA CATGTGTCCA ATCACGGAGT AACTACGCTC 85
AAAAGATTCA TCTCGTCAAT TCCGACCAAA CTGTGTAATT AGTTTTTATT TTCGTCTATA 35172
|||||||||| |||| ||| | | ||| ||||| |||| |||||||||| ||||||||||
AAAAGATTCA TCTCACAAAT TACAGGTAAA CTGTGCAATT AGTTTTTATT TTCGTCTATA 145
TTTAACACTC CATGCATGCG TCTAAAGATT CGATGTGACG GAGAATATGA AAAATTTTAC 35232
||||| ||| |||||||||| | ||||||| |||||||||| ||
TTTAATGCTC CATGCATGCG ACCAAAGATT CGATGTGACG AGGA...... .......... 189
AAAATTTTTT CGGAAGTAAA CAAGGCCCTA GTACTCGACT GCTACCGGGG ACGACGGTAC 35292
.......... .......... .......... .......... .......... .......... 189
GGTGGAAGCA GGCGCCTGTC GAGCATCTCC AGTGCTAAAT CGAACAAAAC TGACAAGGTT 35352
.......... .......... .......... .......... .......... .......... 189
CGGTTGAGTG CAGTACGGTT TGAGAGAGCT GCAGTGTGGC GTCGGTGTTT GCTCCAAACA 35412
.......... .......... .......... .......... .......... .......... 189
AACATTAAAC AAATTGGAAG TGACCCTGCC TAGGAGGTTT CACACACAAC ATTATCAATG 35472
.......... .......... .......... .......... .......... .......... 189
GCTTGTCCTG TATAAAGATT TTTTTATTGA AACAGTCACG GCACGGTTTG GTGCTTGAGT 35532
.......... .......... .......... .......... .......... .......... 189
TTGGTTCGCT TTTAGTTCTG ACAACGAGCA GCCGAACCGT CTAGTGTTCT CGGTTCGATT 35592
.......... .......... .......... .......... .......... .......... 189
TGCTTCTCCC TCGGTTCGAT TCTGCGATAC ACTAGAGGTG CCCTTAGGCG TTGTTTAGAT 35652
.......... .......... .......... .......... .......... .......... 189
GCATCAAAAA CCCCAAACTT TACAAGATTC TCATCACATC GAATCTTGCA ACACATGCAT 35712
.......... .......... .......... .......... .......... .......... 189
AGAACATTAA ATATAGAAAA AAAAGATAAC TAATTGCACA GTTTACCTGT AAATCACGAG 35772
.......... .......... .......... .......... .......... .......... 189
ACAAATCTTT TAAGCCTAGT TGCTCTATGA AAGAACAATG TTTGTCAAAT AAAAACAAAA 35832
.......... .......... .......... .......... .......... .......... 189
ATGCTGCAGC ATCAAAATCC AAAAAATTTT TG-GATCTAA ACAAGGCCTA AGT 35884
||| |||||||| || || |||| |||| |||| |||
.......... ......ATCT TGAAAATTTT TGCGAACTAA ACAAAGCCTC AGT 226
********************************************************************************
EST sequence 78 +strand (File: SBtuc02-10-21.6900+)
1 GCACGAGGGA CAAGTTGTAG CAGAGGAAAT CGATCAGGAA GAGATCGAGA AGATGGGGAG
61 GCAGCAGCTT TGCATGGTGT TCCTGATGGC GTTCCTCGTC GTCTCTACCA TGGACGTTGT
121 CCACGTGGCC GCAGGGAGAG GGCTAGGGGA GGGGAGCTAT GGAGCCTTGA TCCCCGGCGG
181 CACGCCTTCC GTGCCTCGTG GCCAGCCATA CACTGGCCGA ACATGCACAA AAATCTACGC
241 GTGTAAACCG CCTGCTGCTG CTGACGCTGA CGCCGCCGGC GGAGCGCCAT GACGACGATC
301 AGCATGCTTG GCCTGTTTAG ATTGGGGCTG AAAATTTTTT GGGTGTCACA TCGAATGTGT
361 GGGAAGGATG TCGGGAGGGA TTTTTAGAAA CTAATAAAAA AATAAATTAC ATAGCTCGTC
421 AGGAAACTGC AAGACAAATT TATTAAGCAT AATTAATCTG TCATTAGCAT ATGTGGGTTA
481 CTGTAGCACT TAAGGCTAAT CATGGAGTAA CTAGGCTTAA AAGATTCGTC TCGCGATTCT
541 CAACTAAACT GTGTAATTAG TTTATTTTTT TATCTACATT TAATGTTCCA TGCATGTGTC
601 CAAAGATTCG ATGGGATGGA TGAAAAAATT TTTGGTGGGG AACTAAACAG GGCCTAAGAA
661 TAATAATTTC CTTTGAACAA CAAGGCGCCT CTAGTCTAGG CTCTACATAA TCACTAGTAG
721 TAATCAGGTT AGTATGAGTC TATATAATAA TTTAATAAGA TCCAAACTGT AATTGGGCGG
781 AGGCGCTGTG TGTGCATGTA CCCGTGATGG AGATGTAAGT GGGATGTTCG TAAGCCTGGA
841 GTCTTGAGAT GAAGGCAAAT TATTGAACTA TTCTGTGCCA AGTTGTTTAT ACTCTCCACT
901 CCCACCATAC TACTACTAGT GGTATGCCCA TGCTAACGTC ACGGAAAAAG TTAAAAAGAC
961 AATAGGTTTC TATAAAATAA GAATATATAT AGCACAAAAA TAAAAGACTG AATGTGTTCA
1021 ATCTAACATG GATCTCACAT CTTTTCACTT CGCATCCTCT GGAACGCCAT GAAGATATAG
1081 AACGTTGTTG CACCTGTATG TAGATGTACA AACATAAGAA TTGAATCATA CAAGGGCCAA
1141 AGATCCAAAT TCTAAAAAGT TCTAAAAGGT GCACACCAAT TTAAGTTTTG AAGCCCTAGC
1201 CTTCCTTCAC ATGTAACTTG ATCAACACTA CCATAGTACT TTCTAAGTAT CTGTACTTGG
1261 AGTAGGGCAG CTGGATGACA GGATGGATGA TAGCTTTTCC TAGTTTTATA TCTAGATTTA
1321 TTACAAAACA AAACTACTTG ACATGAGCTT ACAATTGATT TAGTGATAAA AGCTATAGAA
1381 GTAAATTTAC AATTGATTTA GTGATAAAAG CTATAAAAGT ATATTTAGCT TTCTTCAAAT
1441 GAATGTCCCA TCGAGCACAG ACTTGAATTT TAGAAACATG ACCACATGAA TGTCATTGCT
1501 CCTTCAAATA CTTTGCCTCT GCACGCAACC TGCAGCACAG TTTTAGCTTC ACATCAAATA
1561 CCTCAGCTCA CAGTCTGATG TGGAACAACT TTGCAAGATG TATTTTTTTT TTTCTCACCT
1621 GGATCGTCGA TGACAAACGT GACAGCATCC CTGTGCATAG CCCCACCTGA TTTAGGCAAC
1681 GTGGTTCAAA TTAAATTTGC AGAAAACATG TCCTTATTCA CCACTTTGAT CCTGTCAATG
1741 TACCAATGTC ACCTCAGTCA TATACACTTA TCACTATTCA CCAATGTCCT TATTCACCAC
1801 TTTGATTCTA TAGCAGGTTT TGTAGTTCAG GAAAACAAAT CTTGTGT
Predicted gene structure (within gDNA segment 31984 to 42230):
Exon 1 33896 33924 ( 29 n); cDNA 398 423 ( 26 n); score: 0.655
Intron 1 33925 33956 ( 32 n); Pd: 0.608 (s: 0), Pa: 0.412 (s: 0)
Exon 2 33957 33990 ( 34 n); cDNA 424 457 ( 34 n); score: 0.618
Intron 2 33991 34673 ( 683 n); Pd: 0.160 (s: 0), Pa: 0.000 (s: 0.56)
Exon 3 34674 34886 ( 213 n); cDNA 458 657 ( 200 n); score: 0.728
Intron 3 34887 39211 (4325 n); Pd: 0.000 (s: 0.68), Pa: 0.984 (s: 0)
Exon 4 39212 39235 ( 24 n); cDNA 658 679 ( 22 n); score: 0.542
Intron 4 39236 39537 ( 302 n); Pd: 0.313 (s: 0), Pa: 0.314 (s: 0)
Exon 5 39538 39545 ( 8 n); cDNA 680 687 ( 8 n); score: 0.250
Intron 5 39546 39854 ( 309 n); Pd: 0.723 (s: 0), Pa: 0.146 (s: 0)
Exon 6 39855 39886 ( 32 n); cDNA 688 719 ( 32 n); score: 0.625
Intron 6 39887 40256 ( 370 n); Pd: 0.000 (s: 0), Pa: 0.994 (s: 0)
Exon 7 40257 40278 ( 22 n); cDNA 720 741 ( 22 n); score: 0.500
Intron 7 40279 41440 (1162 n); Pd: 0.251 (s: 0), Pa: 0.954 (s: 0)
Exon 8 41441 41476 ( 36 n); cDNA 742 774 ( 33 n); score: 0.694
MATCH 21326110+ SBtuc02-10-21.6900+ 0.728 398 0.215 C
PGS_21326110+_SBtuc02-10-21.6900+ (33896 33924,33957 33990,34674 34886,39212 39235,39538 39545,39855 39886,40257 40278,41441 41476)
Alignment (genomic DNA sequence = upper lines):
AAAAATAAAC TTGTATTGTC ATGTGCCAGG TAATTGGACT ACACGTGTTC TATTTTCGAA 33955
||||||||| || || | | || | |
AAAAATAAA- TTACATAG-C TCGT-CAGG. .......... .......... .......... 423
GGGACAGCAA AAGATTTTGC TTTGCCATAA ATAATGTAAA GAGAATTTGA CCTTGATTAT 34015
|| |||| | | || || ||||| ||||
.AAACTGCAA GACAAATTTA TTAAGCATAA TTAAT..... .......... .......... 457
AAGGAAAAAC ATTTCCGAAA AAACATACAA TTAGGATATA AGCGCGATAC AACTTGAGTT 34075
.......... .......... .......... .......... .......... .......... 457
AATAAATCAC GCACAACTTC GTTGGTCCAC TGACCATGCA AAGTAGAAAT ACACAACTTC 34135
.......... .......... .......... .......... .......... .......... 457
GGGCAAAATA ACGCCGGTTT CGAGGTTTGA TACATAGTCT TTTTAGGTGC CTCCGTGGTG 34195
.......... .......... .......... .......... .......... .......... 457
ATCCAGGAAG AGTTCACCAA CCTAGAGATC TTAGAAGCAA TGGGAGTCTA AAGATCAAAT 34255
.......... .......... .......... .......... .......... .......... 457
AACTAGACCG ATAATCTAAT CACTCAGCAC TTCAACCCGC CTAAGAGAGC AACACTATAA 34315
.......... .......... .......... .......... .......... .......... 457
GCGTGATATG TGTCTATATT CTTCATTTTG AATTTTGGCT TCAAGAAAGC TAAAAAAAAC 34375
.......... .......... .......... .......... .......... .......... 457
CCAAAAGCAC CTGGGAGCCC GTGTCTATCT CCGCCAACAT CAGGAAAATG TTGACATTTT 34435
.......... .......... .......... .......... .......... .......... 457
GGATGGAACT AAATACACCC ATAAAAAATG GTATTTTGCA TTTCATCTTT CAAAGTACTT 34495
.......... .......... .......... .......... .......... .......... 457
GGCATTTTGT ATTTTGCATT CCATGGAAAA CTAAACACAC CCCTATTTTA GTATGCGTGC 34555
.......... .......... .......... .......... .......... .......... 457
ATATATAAAT GTTTACGTCT GTGTTACCAC AAAAGTAAAC ATCAAAATAG TTTCCTATGT 34615
.......... .......... .......... .......... .......... .......... 457
GACATGGGTC ATCACACCAA TGATCAAGGC CTTGTTTAAT TCAAAAAAAT TTGCAAAACA 34675
|
.......... .......... .......... .......... .......... ........CT 459
GGCACTGTAG CACTTTCGTT TGTATTTGAC AAATATTGTC TAATCATAGA CTAACTAGGC 34735
| || | ||| || | | | || | | | | | | ||||||| || |||||||||
GTCA-T-TAG CATATGTGGG T-TACTGTAG CACTTAAGGC TAATCATGGA GTAACTAGGC 516
TCAAAAGATT CGTCTCGGCA ATTC-CGACC AAACTATGCA ATTAGTTTTT ATTTTTGTCT 34794
| |||||||| |||||| || |||| | || ||||| || | |||||||| | ||||| |||
TTAAAAGATT CGTCTC-GCG ATTCTCAACT AAACTGTGTA ATTAGTTTAT TTTTTTATCT 575
ATATTTAATA CTCCATGCAT ATGTCTAAAG ATTCGATGTG ACGGAGAATT TGAAAAATTT 34854
| ||||||| ||||||||| |||| |||| |||||||| | | | | | ||||||| ||
ACATTTAATG TTCCATGCAT GTGTCCAAAG ATTCGATGGG A-TG-G-A-- TGAAAAAATT 630
TGCAAATTTT TTGGGAACTA AACAAGGCCC AAGCTGCAAA TCCCTAATCA CTCGTCATTC 34914
| || | |||||||| |||| |||| ||
T-----TTGG TGGGGAACTA AACAGGGCCT AA........ .......... .......... 657
TCATAAATAA AGCTGAAAAA ACTAAATCCA AGTGGGGCAC GCACTTGGAC TTTGGCCTCT 34974
.......... .......... .......... .......... .......... .......... 657
TGGACTTGAG TGGGCGACAC GCCGGATCGG CACCGGCACC TAGGGCTTGT TTAGTTCCAA 35034
.......... .......... .......... .......... .......... .......... 657
AAAATTTTGG GAAATGGACA TTGTAGCACT TTCGTTTGTA TTTGACAAAT ATTGTCCAAT 35094
.......... .......... .......... .......... .......... .......... 657
TATGGACTAA CTAGGCTCAA AAGATTCATC TCGTCAATTC CGACCAAACT GTGTAATTAG 35154
.......... .......... .......... .......... .......... .......... 657
TTTTTATTTT CGTCTATATT TAACACTCCA TGCATGCGTC TAAAGATTCG ATGTGACGGA 35214
.......... .......... .......... .......... .......... .......... 657
GAATATGAAA AATTTTACAA AATTTTTTCG GAAGTAAACA AGGCCCTAGT ACTCGACTGC 35274
.......... .......... .......... .......... .......... .......... 657
TACCGGGGAC GACGGTACGG TGGAAGCAGG CGCCTGTCGA GCATCTCCAG TGCTAAATCG 35334
.......... .......... .......... .......... .......... .......... 657
AACAAAACTG ACAAGGTTCG GTTGAGTGCA GTACGGTTTG AGAGAGCTGC AGTGTGGCGT 35394
.......... .......... .......... .......... .......... .......... 657
CGGTGTTTGC TCCAAACAAA CATTAAACAA ATTGGAAGTG ACCCTGCCTA GGAGGTTTCA 35454
.......... .......... .......... .......... .......... .......... 657
CACACAACAT TATCAATGGC TTGTCCTGTA TAAAGATTTT TTTATTGAAA CAGTCACGGC 35514
.......... .......... .......... .......... .......... .......... 657
ACGGTTTGGT GCTTGAGTTT GGTTCGCTTT TAGTTCTGAC AACGAGCAGC CGAACCGTCT 35574
.......... .......... .......... .......... .......... .......... 657
AGTGTTCTCG GTTCGATTTG CTTCTCCCTC GGTTCGATTC TGCGATACAC TAGAGGTGCC 35634
.......... .......... .......... .......... .......... .......... 657
CTTAGGCGTT GTTTAGATGC ATCAAAAACC CCAAACTTTA CAAGATTCTC ATCACATCGA 35694
.......... .......... .......... .......... .......... .......... 657
ATCTTGCAAC ACATGCATAG AACATTAAAT ATAGAAAAAA AAGATAACTA ATTGCACAGT 35754
.......... .......... .......... .......... .......... .......... 657
TTACCTGTAA ATCACGAGAC AAATCTTTTA AGCCTAGTTG CTCTATGAAA GAACAATGTT 35814
.......... .......... .......... .......... .......... .......... 657
TGTCAAATAA AAACAAAAAT GCTGCAGCAT CAAAATCCAA AAAATTTTTG GATCTAAACA 35874
.......... .......... .......... .......... .......... .......... 657
AGGCCTAAGT GCACCTTAAA AATTAAAAAA ATTTCAAGAT TTTCTGTCAC ATCGAATCTT 35934
.......... .......... .......... .......... .......... .......... 657
GCGATATATG CATGATTGCA TTAAATATAG TCAAAAATAA AAATTAATTA CATAGCTTAC 35994
.......... .......... .......... .......... .......... .......... 657
CTGTAAATCA CGAAATAAAT CTTTTAAATC TAGTTAGTTC ATAATTAGAC AATATTTATA 36054
.......... .......... .......... .......... .......... .......... 657
AAAAACAAAC GAAAGTGCTA CAATGGCCTT GTTTAGTTCA CCCTGAAAAC CAAAAAGTTT 36114
.......... .......... .......... .......... .......... .......... 657
TCAAGATTTC CCGTCACATC GAATCTTGTA ACACATGTAT GAAACATTAA ATATAGACGA 36174
.......... .......... .......... .......... .......... .......... 657
AAACAAAAAC TAATTACACA GATTAGCTGA AAATCACGTG ACAAATTTTT TGATTCTAGT 36234
.......... .......... .......... .......... .......... .......... 657
TAGTCCATGA TTAGATAATA TTTATCACAA ACAAACGAAA ATGCCACAGT ACCAAAAACT 36294
.......... .......... .......... .......... .......... .......... 657
TTTCACTTTT CGGAACTAAA CAAGGCCAAT GTATCAAACC AAAAAATTTT AGGGGCTGTT 36354
.......... .......... .......... .......... .......... .......... 657
TGGTTCGTTG TTGAGTTCAG CCTGGCTTGT ATGCGGCAAC CAGGCCCTGG CGGTCCAGGC 36414
.......... .......... .......... .......... .......... .......... 657
CGAACTCATG CAGGCAGCCA TTGTTTGGTT GGTCGGTTGA TTAGAGCCTG GTTGGGTGCA 36474
.......... .......... .......... .......... .......... .......... 657
TCACTTGTTT GGTTACCCGT TGCTTTGCCT GCCTGCTGCA TCAACTCTCT CATGCACGAG 36534
.......... .......... .......... .......... .......... .......... 657
CCACAACGCA TGCTCATCCC AGCCTGGCCC GATAGAAACG GAAGTGATCT GCGTTTCTGC 36594
.......... .......... .......... .......... .......... .......... 657
GGGGCCTGGC TCAGCGAGGT GTTTTGTATG CGGGTGGCCT GGCCCTGGCA GCCATACAAC 36654
.......... .......... .......... .......... .......... .......... 657
ACACCAAACA CGAGATTCCT GCACCAGCGG ATGCATGCAC GCGGGCATCA GGCCAACCAA 36714
.......... .......... .......... .......... .......... .......... 657
ACACGCCCAG GCCCAGTCGC GTCCGTCCCC CAGTTTTCTG GCCTTGGCCG TACGTGCCGC 36774
.......... .......... .......... .......... .......... .......... 657
GTGCCCCTCT ACCGCGCGCT CCCTGTGCCA TGTCCCATAC CAAACTCCCA TGTGAATGTG 36834
.......... .......... .......... .......... .......... .......... 657
AATTGTGACC ACCATTCTTC GTCAGTCATT CACCCGCACC CGCACGGCGC TACGCAACAA 36894
.......... .......... .......... .......... .......... .......... 657
CAAAAGCAGG TCCGCTCGTC TCGTCTCCCT CCCTCCCGCG GCTCGGCTCG GCTCACCTCA 36954
.......... .......... .......... .......... .......... .......... 657
CCTCACTCCT CTTCGTGCGT CGCCTCGCTG CCGCGTCGGG CCAGCGGGTG AGGCGTGACT 37014
.......... .......... .......... .......... .......... .......... 657
GGGCTCTCTT CGGCGCGCGC ACCGAGGGAC GGCGGCGGCG TCGATGGGGA AGCACATGCG 37074
.......... .......... .......... .......... .......... .......... 657
CATCAAGACG GCGCCCAAGG GCAACCGTGC CCCCCTTCTC GGCGACGGGG TAGGCCGCCC 37134
.......... .......... .......... .......... .......... .......... 657
GCCGTAGGCG CAGGCTCCTA TTCGAATTTG GTTTCTGATG ATTGCGCTCC GAATTTGGTT 37194
.......... .......... .......... .......... .......... .......... 657
TCTGATCATC GAGCTGGTGC CTGCAGGAGA CGTCAAGGGG GCTCACCGAC CTGGAAGAGG 37254
.......... .......... .......... .......... .......... .......... 657
GCAGCAACGT CCAGGTTAGG CGCCCAGCCC CTGCCCTCCT ATCCCTTCCT TTCTCCATCT 37314
.......... .......... .......... .......... .......... .......... 657
GCCGCACAAG GACAAACCTC CCAATTACAA GCGCCGGCTG CATAACTAAT CCTTGCCTTT 37374
.......... .......... .......... .......... .......... .......... 657
TTTATCATTA TTTTGTACAT ACAATTGGAA TTCTCTCAGC CAGCGAACGT CGGGTTCTGT 37434
.......... .......... .......... .......... .......... .......... 657
CGGGTCATCA AACTTGTGAG TGAGCGCTTG TCTCTTCGAT TTTTAGCTCT TTCTCTTGCG 37494
.......... .......... .......... .......... .......... .......... 657
CTGATGTTGG TCATGCTGAA ACGGATGAGC ACGGGTTTGT AGGCCAAGCA TGACGCCGGG 37554
.......... .......... .......... .......... .......... .......... 657
AAGCTGGTCC TCGCCACTAT GGCGCTGCTC GTTGCCTCCC TCAGCAACCT TCTCGTTGTA 37614
.......... .......... .......... .......... .......... .......... 657
GGTACCTGCC ACTTGTTGGA AAGAAAAGCT ATTGATGCTA ATGTTTGTTT TTTGTTATCT 37674
.......... .......... .......... .......... .......... .......... 657
TTTTCACTTT TTGGAACAAG GATAGCTGCT AAGCCTTTCC TGTCTTCATG AGGGCTTGAG 37734
.......... .......... .......... .......... .......... .......... 657
CACAAGCATG CAGAAATCTG GTTCCTCTAT TAGCAATTAG CATGTATGTT GATTTAAATT 37794
.......... .......... .......... .......... .......... .......... 657
CAGCTAGTAC CTTGATGGAA TTGAAGTAAG TCGACTCTGT AGATATTTAG AGGCTTCTGT 37854
.......... .......... .......... .......... .......... .......... 657
TCAAACTGTT GTTAGTATGA ATCAGTGTCC AGTGATGAGT AGAATACAAC CACTTTCAGG 37914
.......... .......... .......... .......... .......... .......... 657
GCAATTGTTA TTTTCATTCT TAAAGAGCGT GGTCATCAAG CATTGTTTTC ATGTTGTAAT 37974
.......... .......... .......... .......... .......... .......... 657
GCATGGATCG TCTTGTGATG TCCTACAGCC GAAATATGGT GGCAAGATAA TTGACATTGT 38034
.......... .......... .......... .......... .......... .......... 657
GTCAAGAGAC GTTCGGCGAC CAGAAGATAA GGCGCAAGCC CTGGAGGATG TGAAGGGCAC 38094
.......... .......... .......... .......... .......... .......... 657
AATTTTGTAC ATTGTGACAA TCGTTTTAGT CGGGTATCTT TCTTTCTCCG AAAAGTTGAC 38154
.......... .......... .......... .......... .......... .......... 657
TTTGAGAATC ATCAGAGATG CTCTGTACTC AAACTTTTAC AAGCTTATGT GTGGATCAAG 38214
.......... .......... .......... .......... .......... .......... 657
TTATGCTGCA ATCTTACTTT GTACTCCCTC CATTCCAAAT TATAAGACGT TTTATAAGTT 38274
.......... .......... .......... .......... .......... .......... 657
AGTTTTTTGG TGGATACTTT GAATCATTAA AAACTATGTC TTACCTTGTT TCAGTTCAGT 38334
.......... .......... .......... .......... .......... .......... 657
TTGCACGGCT CTTCGGGCAT GGCTATTCAA TTCTGCTAGT GAGAGAGTAG TCGCTCGACT 38394
.......... .......... .......... .......... .......... .......... 657
AAGGAAGGAC TTGTTTAGTC ATCTCATAAA CCAGGCAAGC AAGTTTCTTC TATCCAAAGT 38454
.......... .......... .......... .......... .......... .......... 657
TTATCACATA TAGTTCTCCA CACAGCAACA TTCTTACTCG TAAGAATTGT GCCACTGCAG 38514
.......... .......... .......... .......... .......... .......... 657
GAAATAGCGT TTTTTGATGT GACTAGAACA GGAGAGCTCT TAAGCAGGCT TTCTGAAGAT 38574
.......... .......... .......... .......... .......... .......... 657
ACACAGATAA TAAAGAATGC TGCTACAACC AATCTATCAG AGGCACTGCG CAATCTCACT 38634
.......... .......... .......... .......... .......... .......... 657
ACTACAGCTA TTGGTCTTGG TTTTATGTTT TCAACTTCAT GGAAGTTAAC ATGTAAGTAA 38694
.......... .......... .......... .......... .......... .......... 657
TATGTTTGTA TGTATAGAAC TCAGTTGGCA TTTTATTCTG ATTTGGAAGG CTATTATGCA 38754
.......... .......... .......... .......... .......... .......... 657
CAAAAGCTTT ATATGCTTAG CTGAACTTCA CAAAGGAACA CATCTGGGCA ACATTTATTT 38814
.......... .......... .......... .......... .......... .......... 657
GAGCATTTTC TTTAATTTGT GTAAACCCTC TGCATATGAT CAAGTCAATC TCACTGGTTG 38874
.......... .......... .......... .......... .......... .......... 657
CTATCTGCAC TTGCTATCTG CACAGTGCTG GCACTTGTAA TTGTCCCAGT TATATCAGTT 38934
.......... .......... .......... .......... .......... .......... 657
GCTGTGCGCA AATTTGGACG CTTTCTTCGT GAGCTTTCAC ATCAGACACA AGCTGCTGCA 38994
.......... .......... .......... .......... .......... .......... 657
GCTGTAGCTT CATCCATAGC TGAGGTTTGT ATACCAGAGC ATCTTGTGGC TTGTGATTCA 39054
.......... .......... .......... .......... .......... .......... 657
CTAATGGACA TGTGAGGAGG TTTCTGTGAC CCCTTTATTT GGGTAGTGTC ACAAAAAATA 39114
.......... .......... .......... .......... .......... .......... 657
AGCAAATTGG TGTTTTGACT TTGGATTGCA TGCATATAAC AGAATCATTT TTTTTTGTTT 39174
.......... .......... .......... .......... .......... .......... 657
CTATTTATGT CTTGATAAAG TCTATACTAC CATTCAGGAA TCCTTTGGTG CCATCCGTAC 39234
||| | | | || | | ||
.......... .......... .......... .......GAA T-AATAATTT CC-TTTGAAC 678
AGTAAGATCC TTTGCTCAGG AATCTCATGA GATTTCACGC TATGGTGGAA AAGTTGAGGA 39294
|
A......... .......... .......... .......... .......... .......... 679
GACACTTAAA CTTGGTCTCA AACAAGCTGT GAGTGTCCTA CCATTCATGT AAAATAACAC 39354
.......... .......... .......... .......... .......... .......... 679
CATATTCCAT AAATTAACGG TCTGATTCGA TGCAAATCAT TTGTAGAAAG TTGTTGGCTT 39414
.......... .......... .......... .......... .......... .......... 679
GTTTTCTGGA GGGCTTAATG CAGCGTCAAC CTTGTCAGTG GTTATTGTTG TTATTTATGG 39474
.......... .......... .......... .......... .......... .......... 679
AGCCAACTTA ACCATCAATG GCTACATGAC AACTGGTTCT CTTACATCAT TCATCTTATA 39534
.......... .......... .......... .......... .......... .......... 679
CAGCCTTACA GGTACTTTCC AGATTAACAG TATTCATACT GAACCTAGCA TCGTGCCTGA 39594
| |
...ACAAGGC G......... .......... .......... .......... .......... 687
TTTTGTCACT GTAAATAAGC GTCGTTTAGG CTGGCACATT GGTTTTCAAA TATATAATTT 39654
.......... .......... .......... .......... .......... .......... 687
ATGGTTTATT GATATCTATG AACAATTCCA TTTCTTGTGT ATGCAGTTGG TTCGTCAGTA 39714
.......... .......... .......... .......... .......... .......... 687
TCTGCCTTGT CAGGACTATA CACAACTGTA ATGAAAGCCT CTGGTGCAAG CCGTAGAGTT 39774
.......... .......... .......... .......... .......... .......... 687
TTTCAACTTC TGGACCGTGT TTCCTCAATG ACAAACTCTG GGGACAAATG TCCAATAAAG 39834
.......... .......... .......... .......... .......... .......... 687
TTAGTTCCTT TGTCTATCAG CTTTCTAGAG T-GGTTCTGC TTATTCAATA GCAGTGCACA 39893
| ||||| | || ||| | || ||| || | |
.......... .......... C-CTCTAGTC TAGGCTCTAC ATAATCACTA GTA....... 719
GCTCCTTTAA TTAATGACCA TTTATTTTTT TAGTGAAAAG GATGGGGAAG TTGAGCTTGA 39953
.......... .......... .......... .......... .......... .......... 719
TGATGTCTGG TTCGCATATC CTTCTCGCCC TTCTCATATG ATTCTTAAGG TACCTCCCAG 40013
.......... .......... .......... .......... .......... .......... 719
AATACTGTGC AACTGACATG GCCATTACCA GAGTGACATT TTCGTTATAC ATAAACAGTG 40073
.......... .......... .......... .......... .......... .......... 719
TACATATGTA AGAGAAACTA GGAGCCAAGC TTGCACCAGC TATCATCCAT ATTCTTGTGG 40133
.......... .......... .......... .......... .......... .......... 719
GATCTTCTGG TTTACCAGAT TAGTGGGCTC TCTTTTCAAA AAGGAATAAC AATCCATACC 40193
.......... .......... .......... .......... .......... .......... 719
ATTGTGTTTT TCCACGTTTT GTTTTGTTTT GTTTTGTTTT AGTTCATTCC TCTGTGATCC 40253
.......... .......... .......... .......... .......... .......... 719
CAGGTGAGAA GGCAATTGCT CTTCTGTGAG CGCAGTTGGG GCTATCGAGT GCCAAGTCTA 40313
|| | | || | | |||
...GTAATCA GGTTAGTATG AGTCT..... .......... .......... .......... 741
TTTACTCTTA TATTAGTCTG TTACTTTAAT GTGGGGCTGT AGGCAGAGTC CCTGCCCCTC 40373
.......... .......... .......... .......... .......... .......... 741
TTTCACTCTA AAAGAAAAAA AAATACAGTG ACATACATGA GTTCACATTA CAAACATAGT 40433
.......... .......... .......... .......... .......... .......... 741
GTTTTGATTG GTTCATATGG AATTTTTTAG GATGACATAT ATGGGAATTT CATCATTAGC 40493
.......... .......... .......... .......... .......... .......... 741
TTGAATTACT ATTTTTTTGT GAGGACATTG CTTGAGTAAT CTTTGTTGTG CTAGTGGCCA 40553
.......... .......... .......... .......... .......... .......... 741
GTTTTCGTCA TGGGAGCATT ATAGTTATGC TTATGCTTGC TATAACAATA TTGCAGGGAA 40613
.......... .......... .......... .......... .......... .......... 741
TAACGCTGAA GTTAGCTCCA GGTTCAAAGG TTGCACTTGT TGGGCCAAGT GGTGGTGGTA 40673
.......... .......... .......... .......... .......... .......... 741
AAGTAAGTTT TTTTTGCCCA TACTAATTAC GTGGCTCACT TTATCTTAAA GTAGAAAGTG 40733
.......... .......... .......... .......... .......... .......... 741
TTTTCAAACT GTGGCCTCTA TTATAACATT AACTTTTGCA GACCACAATA GCAAATTTGA 40793
.......... .......... .......... .......... .......... .......... 741
TTGAGCGGTT TTATGACCCT CTAAAGGGAA GGATATTGCT TAATGGAGTA CCATTGGTAG 40853
.......... .......... .......... .......... .......... .......... 741
AAATTTCACA TCAATATCTT CACAGCAAGG TATGTCATGC AGCTATTTTT TAGTTATATT 40913
.......... .......... .......... .......... .......... .......... 741
GTGGAAAAAA TATTATCTAA GCTAGGGTAG TGTTGCAAGG TTCACAATTC TGGTGGATGA 40973
.......... .......... .......... .......... .......... .......... 741
TGATACTTTA TTGCCCTGAA CTGTCTATGG CTAGTTCAAT CCTTCCATCT GTGTCAAAAT 41033
.......... .......... .......... .......... .......... .......... 741
TTCATTTCAT TGTTCCACCT AAAGTCTCGA CTCTGGTGAA TCCAGTAATT TTGGCTACTT 41093
.......... .......... .......... .......... .......... .......... 741
TAAATGGTAA TTTGGAGTAT CACTAGTATA AAATTTGGTG AATTTGGGAA TGTGAAAGTA 41153
.......... .......... .......... .......... .......... .......... 741
TTTAGTTGGT AACTCAAACC AGCATTATCA TCATCTGTTC AAAATTCAAC TAGTAATGAG 41213
.......... .......... .......... .......... .......... .......... 741
CACTTATAAT TCTATAGTTT GTACTAAGCA ATGCTGAGTC CTGACTCCTG AGTGTTGTAA 41273
.......... .......... .......... .......... .......... .......... 741
AAAAGAAGCA ACCTGACCCA TCTAAATCTA TAGGTTGAAC AACAACCATT AGGTTTCTAT 41333
.......... .......... .......... .......... .......... .......... 741
TTCCAGTCGA TTTTAATCAT GACATAACTA TTTTAAACAG CCAAACCCCC ATATGTATTG 41393
.......... .......... .......... .......... .......... .......... 741
TGTCCTTTTT TCAAACAAAA AAATATATAT TTGTTTCATG TTTTCAGATT ATTGATTTTG 41453
| | | | || |
.......... .......... .......... .......... .......A-T A-TAATAAT- 751
GAAAAAAAAT CCAAATTGTA ATT 41476
|| || || ||||| |||| |||
TTAATAAGAT CCAAACTGTA ATT 774
********************************************************************************
EST sequence 274 -strand (File: 20553288-)
1 TCACTGTATT CAGGGCCTGT TTAGATTGGG ATCGAAAATT TTCTGCGTGT CACATCGGAT
61 ATGTCGGAAA GATGTCGGGA GGGGTTTTTA GAATCTAATA AAAAAACAAA TTACATAGCT
121 CGTCAGGAAA CTGCAAGACA AATTTATTAA GCATAATTAA TCTGTCATTA GCATATGTGG
181 GTTACTGTAG CACTTAAGGC TAATCATGGA GTAACTAGGC TTAAAAGATT CGTCTAGCGA
241 TTCTCAACTA AACTGCGTAA TCAGTTCATT TTTTTATCTA CATTTAATAT TCCATGCATG
301 TGTCCAAAGA TTCGATGAGA TGGATGAAAA ATTTTTGGAT GGGGAACTAA ACAGG
Predicted gene structure (within gDNA segment 33459 to 36242):
Exon 1 33888 33924 ( 37 n); cDNA 93 127 ( 35 n); score: 0.622
Intron 1 33925 33956 ( 32 n); Pd: 0.608 (s: 0), Pa: 0.412 (s: 0)
Exon 2 33957 33990 ( 34 n); cDNA 128 161 ( 34 n); score: 0.618
Intron 2 33991 34673 ( 683 n); Pd: 0.160 (s: 0), Pa: 0.000 (s: 0.56)
Exon 3 34674 34831 ( 158 n); cDNA 162 316 ( 155 n); score: 0.728
MATCH 21326110+ 20553288- 0.728 229 0.645 C
PGS_21326110+_20553288- (33888 33924,33957 33990,34674 34831)
Alignment (genomic DNA sequence = upper lines):
ATCTAAAGAA AAATAAACTT GTATTGTCAT GTGCCAGGTA ATTGGACTAC ACGTGTTCTA 33947
|||||| || ||| || || || | | || | |
ATCTAATAAA AAAACAAATT ACATAG-CTC GT-CAGG... .......... .......... 127
TTTTCGAAGG GACAGCAAAA GATTTTGCTT TGCCATAAAT AATGTAAAGA GAATTTGACC 34007
|| |||| | | || || ||||| | |||
.........A AACTGCAAGA CAAATTTATT AAGCATAATT AAT....... .......... 161
TTGATTATAA GGAAAAACAT TTCCGAAAAA ACATACAATT AGGATATAAG CGCGATACAA 34067
.......... .......... .......... .......... .......... .......... 161
CTTGAGTTAA TAAATCACGC ACAACTTCGT TGGTCCACTG ACCATGCAAA GTAGAAATAC 34127
.......... .......... .......... .......... .......... .......... 161
ACAACTTCGG GCAAAATAAC GCCGGTTTCG AGGTTTGATA CATAGTCTTT TTAGGTGCCT 34187
.......... .......... .......... .......... .......... .......... 161
CCGTGGTGAT CCAGGAAGAG TTCACCAACC TAGAGATCTT AGAAGCAATG GGAGTCTAAA 34247
.......... .......... .......... .......... .......... .......... 161
GATCAAATAA CTAGACCGAT AATCTAATCA CTCAGCACTT CAACCCGCCT AAGAGAGCAA 34307
.......... .......... .......... .......... .......... .......... 161
CACTATAAGC GTGATATGTG TCTATATTCT TCATTTTGAA TTTTGGCTTC AAGAAAGCTA 34367
.......... .......... .......... .......... .......... .......... 161
AAAAAAACCC AAAAGCACCT GGGAGCCCGT GTCTATCTCC GCCAACATCA GGAAAATGTT 34427
.......... .......... .......... .......... .......... .......... 161
GACATTTTGG ATGGAACTAA ATACACCCAT AAAAAATGGT ATTTTGCATT TCATCTTTCA 34487
.......... .......... .......... .......... .......... .......... 161
AAGTACTTGG CATTTTGTAT TTTGCATTCC ATGGAAAACT AAACACACCC CTATTTTAGT 34547
.......... .......... .......... .......... .......... .......... 161
ATGCGTGCAT ATATAAATGT TTACGTCTGT GTTACCACAA AAGTAAACAT CAAAATAGTT 34607
.......... .......... .......... .......... .......... .......... 161
TCCTATGTGA CATGGGTCAT CACACCAATG ATCAAGGCCT TGTTTAATTC AAAAAAATTT 34667
.......... .......... .......... .......... .......... .......... 161
GCAAAACAGG CACTGTAGCA CTTTCGTTTG TATTTGACAA ATATTGTCTA ATCATAGACT 34727
| | || | ||||| | | | | | || || | ||| ||||| || |
......CTGT CA-T-TAGCA TATGTGGGTT ACTGTAGCAC TTAAGG-CTA ATCATGGAGT 212
AACTAGGCTC AAAAGATTCG TCTCGGCAAT TC-CGACCAA ACTATGCAAT TAGTTTTTAT 34786
||||||||| |||||||||| ||| || || || | || || ||| | ||| |||| | |
AACTAGGCTT AAAAGATTCG TCT-AGCGAT TCTCAACTAA ACTGCGTAAT CAGTTCATTT 271
TTTTGTCTAT ATTTAATACT CCATGCATAT GTCTAAAGAT TCGAT 34831
|||| |||| |||||||| | |||||||| | ||| |||||| |||||
TTTTATCTAC ATTTAATATT CCATGCATGT GTCCAAAGAT TCGAT 316
********************************************************************************
EST sequence 77 +strand (File: 18068086+)
1 CAGCACCTTT GAGCACTGGT TTGGCTGCTG ATGTTCATGG ACAGGTTAGG CTCCTGATCC
61 TTCATATTTG TTTAAGTTTG AGCTGTACCA TGATGCATCG TGGCTTAGTT GGATTCGTTG
121 ACCTGGTAGT TCGATAAACT CACATTATTT GGTCTTATTT TGATGTTTCA CAACTTTCAT
181 TTTACCCTCT GATAAATCTT TTCTGAAGCG GTAGAAATGT TTCTGCAGCT GTCGGTGGTG
241 AACAAGGGTA CATTCGGCGA GCAAAGGGCA AAAGCACAGA AAGTTTGGAA CTTCCATTTC
301 AAAGTGAAGG AAAACGGTGC TGATTTCTTC TATCCAGGGA CTAGACATTA GGGAGTACTT
361 AGGCCGTGTT TACTTCCTCA ACCAAAACAT TTCGTTACAC TGTAGCTTTT TCGTTTGTTT
421 GTGGTAATTA TTGTCCAACC ATGGACTAAT TAGGCTCAAA AGATTCGTCT TGTCAATTTC
481 GACCAAACTA TGTAATTAGT CTTTATTTTT ATCTATATTT AATACTCCAT GCATCCGTCT
541 AAAGATTCGA TGTGACGGGG AATCTTGAAA AATTTTAGTT TTTTGGGAGG AAGTAAACAA
601 NGGCCTTATA TTGCAGT
Predicted gene structure (within gDNA segment 32216 to 35645):
Exon 1 34677 34855 ( 179 n); cDNA 397 576 ( 180 n); score: 0.872
MATCH 21326110+ 18068086+ 0.872 179 0.290 C
PGS_21326110+_18068086+ (34677 34855)
Alignment (genomic DNA sequence = upper lines):
GCACTGTAGC ACTTTCGTTT GTATTTGACA AATATTGTCT AATCATAGAC TAACTAGGCT 34736
||||||||| |||||||| || | || | | ||||||| || ||| ||| ||| ||||||
ACACTGTAGC TTTTTCGTTT GTTTGTGGTA ATTATTGTCC AACCATGGAC TAATTAGGCT 456
CAAAAGATTC GTCTCGGCAA TTCCGACCAA ACTATGCAAT TAGTTTTTAT TTTTGTCTAT 34796
|||||||||| |||| | ||| || ||||||| |||||| ||| |||| ||||| |||| |||||
CAAAAGATTC GTCTTGTCAA TTTCGACCAA ACTATGTAAT TAGTCTTTAT TTTTATCTAT 516
ATTTAATACT CCATGCATAT GTCTAAAGAT TCGATGTGAC GGAGAAT-TT GAAAAATTTT 34855
|||||||||| |||||||| |||||||||| |||||||||| || |||| || ||||||||||
ATTTAATACT CCATGCATCC GTCTAAAGAT TCGATGTGAC GGGGAATCTT GAAAAATTTT 576
********************************************************************************
EST sequence 27 +strand (File: 12500782+)
1 CAGTTCACCG TCATTATAGA TGACGCTTCC CTGTTGGAAA TTGTGGCCCT TGGTTCTGTA
61 AATGATGTAC TGGATTTCTT GCACTATTGT TTTGCACTCA CGTCTGAGAT GAATTGCACA
121 CTAGTGGTTC TCATCCACGA GGATATATAT GCAGACGAAG AGAACATTGG TCTCCTTTTA
181 CATCTGCGCT ACATTGCTGA TCTTGTGATT AAAGCAGCAC CTTTGAGCAC TGGTTTGGCT
241 GCTGATGTTC ATGGACAGCT GTCGGTGGTG AACAAGGGTA CATTCGGCGA GCAAAGGGCA
301 AAAGCACAGA AAGTTTGGAA CTTCCATTTC AAAGTGAAGG AAAACGGTGC TGATTTCTTC
361 TATCCAGGGA CTAGACATTA GGGAGTACTT AGGCCGTGTT TACTTCCTCA ACCAAAACAT
421 TTCGTTACAC TGTAGCTTTT TCGTTTGTTT GTGGTAATTA TTGTCCAACC ATGGACTAAT
481 TAGGCTCAAA AGATTCGTCT TGTCAATTTC GACCAAACTA TGTAATTAGT CTTTATTTTT
541 ATCTATATTT AATACTCCAT GCATACGTCT AAAGATTCGA TGTGACGGGG AATCTTAAAA
601 A
Predicted gene structure (within gDNA segment 32031 to 35208):
Exon 1 34677 34851 ( 175 n); cDNA 427 601 ( 175 n); score: 0.874
MATCH 21326110+ 12500782+ 0.874 175 0.291 C
PGS_21326110+_12500782+ (34677 34851)
Alignment (genomic DNA sequence = upper lines):
GCACTGTAGC ACTTTCGTTT GTATTTGACA AATATTGTCT AATCATAGAC TAACTAGGCT 34736
||||||||| |||||||| || | || | | ||||||| || ||| ||| ||| ||||||
ACACTGTAGC TTTTTCGTTT GTTTGTGGTA ATTATTGTCC AACCATGGAC TAATTAGGCT 486
CAAAAGATTC GTCTCGGCAA TTCCGACCAA ACTATGCAAT TAGTTTTTAT TTTTGTCTAT 34796
|||||||||| |||| | ||| || ||||||| |||||| ||| |||| ||||| |||| |||||
CAAAAGATTC GTCTTGTCAA TTTCGACCAA ACTATGTAAT TAGTCTTTAT TTTTATCTAT 546
ATTTAATACT CCATGCATAT GTCTAAAGAT TCGATGTGAC GGAGAATTTG AAAAA 34851
|||||||||| ||||||||| |||||||||| |||||||||| || |||| | |||||
ATTTAATACT CCATGCATAC GTCTAAAGAT TCGATGTGAC GGGGAATCTT AAAAA 601
********************************************************************************
EST sequence 59 +strand (File: 8089073+)
1 GGCGACGCCG TTGCCGAGGC CGAGCGCTCC GCGCACCTCG ATGGTGGAGG TCGGGGCGGC
61 AGCGAGCTGG TCCGTGGCCC AGTCGAGGAA GCGGTGGAAG TTGCGGACAA AGGGCACCAC
121 GTTGCCAAGC ACGGGGTTCG GGTAGGGGCA GTGGTTGCGG TGGCCCGCGC GGCACCGGAG
181 GCCCGTGGAG AGCAGGATGG CGACGGTGAC GCCGAGGACG AGGAGCGGCG CCACAGCGGC
241 GTCCATGGCG TGATCACGAG GCTGTGCTCA GTCGTGTGGT CGCCAGTGGC TTGGCCAACT
301 GCTCGTGTCA ATTCACTTGC CTTCACCATT CACGGTGACC TAGTGACGTT GACTTTTTTT
361 GGGACAGAAC TGTCCTGCGA CTACGACATG GGAATGCCTT GTTCCGAAAA GTGAAAAACT
421 TTTAAGTACT GTAGCACTTT TGTTTGTTTG TGACAAATAT TATCCAATCA TATACTAACT
481 AGGATCAAAA GATTCGTCTC GTGATTTACA GCTAAACTGT GTAATTAGTT TTTGTTTTTG
541 TCTATATTTA ATGTTTCA
Predicted gene structure (within gDNA segment 32244 to 35517):
Exon 1 32574 32589 ( 16 n); cDNA 375 390 ( 16 n); score: 0.750
Intron 1 32590 33907 (1318 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0)
Exon 2 33908 33924 ( 17 n); cDNA 391 406 ( 16 n); score: 0.647
Intron 2 33925 34360 ( 436 n); Pd: 0.608 (s: 0), Pa: 0.788 (s: 0)
Exon 3 34361 34379 ( 19 n); cDNA 407 425 ( 19 n); score: 0.579
Intron 3 34380 34676 ( 297 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.86)
Exon 4 34677 34809 ( 133 n); cDNA 426 558 ( 133 n); score: 0.842
MATCH 21326110+ 8089073+ 0.842 185 0.332 C
PGS_21326110+_8089073+ (32574 32589,33908 33924,34361 34379,34677 34809)
Alignment (genomic DNA sequence = upper lines):
GTGCTACGAG GACATGCCTC TACAAGATTC ACAAGCGACG CAAGAGCAGC AGACGATACA 32633
||| || | ||||||
CTGCGACTAC GACATG.... .......... .......... .......... .......... 390
AAATCTTTGT GATACACTTC GAACCATACT GAGGTTGTAG ATTTGCAAGA GTGAAGGTTA 32693
.......... .......... .......... .......... .......... .......... 390
CAACCTTTGG AGTTCTGAAG CGCTGCATGG AGCCAAGGGT GAACATGGCT TCTCATGGTG 32753
.......... .......... .......... .......... .......... .......... 390
GACACTGAAC CTGCTCGGGG TGGAGCCCCA AGGATCGAAG GAAGGCATGA CATCTGTGTA 32813
.......... .......... .......... .......... .......... .......... 390
CCTTGGAGCA GGCCTAATGA CAACTGCGTT TGAGCTTGTG GACGGCTGGA CGCTTTGGTG 32873
.......... .......... .......... .......... .......... .......... 390
ACTGGAAGCT GATTGACACA GGGATTTCTG TGGGGAGTGG AAATTTCTGT CTCTGTTAAT 32933
.......... .......... .......... .......... .......... .......... 390
AGCCTCTAGG GGTTTCAGCG GTCGGTGTAT GTAGAGACTG CATCGACATT TTGCTAATCA 32993
.......... .......... .......... .......... .......... .......... 390
AATTTTGCGG CAGTAATGCC TATTGTAGTC TGGTTTTCAA TCGTTGACAA TGCAATTGTC 33053
.......... .......... .......... .......... .......... .......... 390
TTCCTCCAAA TAAAGAGAAA TAGTTGAGCA GGAATAAAAA AAATGATTTA GGTTGGCTAT 33113
.......... .......... .......... .......... .......... .......... 390
CCGAAATCAT GGGCGGCGTG ATTTATGCTG CCATGTCCGC CTATTCCTTG TGCCTGGTCA 33173
.......... .......... .......... .......... .......... .......... 390
TTATACGCCA TGCTTCGTGT TGTTACAAGT GCCAGTTCAT TAACCGCGCG TGTGAACGGC 33233
.......... .......... .......... .......... .......... .......... 390
GTGCTTCTTG TTAATGGTTG CTTAACGCCT GTCCCAGTTG AGGTCGGGAA CATGGAAATA 33293
.......... .......... .......... .......... .......... .......... 390
TTCGGGCTGT TACTGACCAT CCATCTCGAG TTGACAGGTA CGCTATGTTC TGTGAACAGA 33353
.......... .......... .......... .......... .......... .......... 390
GCGCGTTCCA CGTAAGCAAA ATTTCTGCTT GCTGCTAGCC CAACCTGATG TTTCAAACTT 33413
.......... .......... .......... .......... .......... .......... 390
GGATCATGGG TACTATCTTG GTTTTTGTCC GGAAATAACC AAATCCGGCG GGACAGCTGA 33473
.......... .......... .......... .......... .......... .......... 390
AAGGTAGACG TGACAACATA GGTCGGATGC CGCATCCTAC CAAACCACCG TGGCAGCGAC 33533
.......... .......... .......... .......... .......... .......... 390
TACTTACACT TTGCCCCCAA TACTCAACGA AGATGCCAAT TGCCAATCAT CAAAATCTAG 33593
.......... .......... .......... .......... .......... .......... 390
GGGAGAGGAG GGCCGGCCAG TGATGTGCAT TTGTAGTGGT GCTACCTAAT TAGGTATCCC 33653
.......... .......... .......... .......... .......... .......... 390
TGAAGATTTG TATGGTTTGT TTGTGTCAGT ACATGTGTCT TATTAGGTAT CCTCTTTACA 33713
.......... .......... .......... .......... .......... .......... 390
AAATTGCATA GAAAGAGAAA GCATGAAACA TAACATAGGA GTACTATTAT AAGTTAGTGC 33773
.......... .......... .......... .......... .......... .......... 390
ATACACCGAT GTACAATCTT GGTTCAGTTC CTTAGGTTCA TTTATTCTTT TCCTTTTCTT 33833
.......... .......... .......... .......... .......... .......... 390
TGTTTGAAAC ATCCAGATTA GTTCATTTTG ATGTATTTTT CGATTGATCT ATCTATCTAA 33893
.......... .......... .......... .......... .......... .......... 390
AGAAAAATAA ACTTGTATTG TCATGTGCCA GGTAATTGGA CTACACGTGT TCTATTTTCG 33953
| | || | ||| || |
.......... ....GGAATG CCTTGTTCC- G......... .......... .......... 406
AAGGGACAGC AAAAGATTTT GCTTTGCCAT AAATAATGTA AAGAGAATTT GACCTTGATT 34013
.......... .......... .......... .......... .......... .......... 406
ATAAGGAAAA ACATTTCCGA AAAAACATAC AATTAGGATA TAAGCGCGAT ACAACTTGAG 34073
.......... .......... .......... .......... .......... .......... 406
TTAATAAATC ACGCACAACT TCGTTGGTCC ACTGACCATG CAAAGTAGAA ATACACAACT 34133
.......... .......... .......... .......... .......... .......... 406
TCGGGCAAAA TAACGCCGGT TTCGAGGTTT GATACATAGT CTTTTTAGGT GCCTCCGTGG 34193
.......... .......... .......... .......... .......... .......... 406
TGATCCAGGA AGAGTTCACC AACCTAGAGA TCTTAGAAGC AATGGGAGTC TAAAGATCAA 34253
.......... .......... .......... .......... .......... .......... 406
ATAACTAGAC CGATAATCTA ATCACTCAGC ACTTCAACCC GCCTAAGAGA GCAACACTAT 34313
.......... .......... .......... .......... .......... .......... 406
AAGCGTGATA TGTGTCTATA TTCTTCATTT TGAATTTTGG CTTCAAGAAA GCTAAAAAAA 34373
||| | |||||
.......... .......... .......... .......... .......AAA AGTGAAAAAC 419
ACCCAAAAGC ACCTGGGAGC CCGTGTCTAT CTCCGCCAAC ATCAGGAAAA TGTTGACATT 34433
||
TTTTAA.... .......... .......... .......... .......... .......... 425
TTGGATGGAA CTAAATACAC CCATAAAAAA TGGTATTTTG CATTTCATCT TTCAAAGTAC 34493
.......... .......... .......... .......... .......... .......... 425
TTGGCATTTT GTATTTTGCA TTCCATGGAA AACTAAACAC ACCCCTATTT TAGTATGCGT 34553
.......... .......... .......... .......... .......... .......... 425
GCATATATAA ATGTTTACGT CTGTGTTACC ACAAAAGTAA ACATCAAAAT AGTTTCCTAT 34613
.......... .......... .......... .......... .......... .......... 425
GTGACATGGG TCATCACACC AATGATCAAG GCCTTGTTTA ATTCAAAAAA ATTTGCAAAA 34673
.......... .......... .......... .......... .......... .......... 425
CAGGCACTGT AGCACTTTCG TTTGTATTTG ACAAATATTG TCTAATCATA GACTAACTAG 34733
| ||||| |||||||| | ||||| | || ||||||||| || ||||||| |||||||||
...GTACTGT AGCACTTTTG TTTGTTTGTG ACAAATATTA TCCAATCATA TACTAACTAG 482
GCTCAAAAGA TTCGTCTCGG CAATTCCGAC CAAACTATGC AATTAGTTTT TATTTTTGTC 34793
| |||||||| ||||||||| | || | | ||||| || |||||||||| | ||||||||
GATCAAAAGA TTCGTCTCGT GATTTACAGC TAAACTGTGT AATTAGTTTT TGTTTTTGTC 542
TATATTTAAT ACTCCA 34809
|||||||||| | ||
TATATTTAAT GTTTCA 558
********************************************************************************
EST sequence 30 +strand (File: SBtuc02-10-21.1543+)
1 CCGATTAGTG AGCTTGCCGG TTGAAAGCCC AAAACCTGTA AGTACTACTA ACAGAGGGTT
61 TGCCCGGCTG CTTATTTTAC AATTGTTATA GGTAGCGAAT TCTTTGTTGT ACCATGAAAA
121 ATAGTTACCA GTTGTCACAA TGAAATCCAA GAGCAGTTCA TCTCCCACTG GCTAAACATG
181 CTTTTCAAGA AGATCAACAA CTACAGTGAT TGATTCAAGG AACCAGAATT CAGAATGATG
241 AAAGAGACAA ATGGCATCAC ATCTAAGGTT CATAGGATTG TTCATTCAAA AAGTTCTCAC
301 TGCCAACTCC AGAATTTCCA ACCACCTGAC CCAATCAATA GGATATGGAG ATCAAAGCGC
361 AGCAACAAGC TCTAGGTTTT CTCACGGCTT CTTCTAGATG CCTGAACACC AGAGATATAC
421 TCAGAATCAG AACTGCTGTG TCAATGCACA CTGTAGCACT TTCGTTCGTA TTTGACAAAT
481 GTTGTCCAAT CATGGACTAA CTAGGCTCAA AAGATTTGTC TCGTAAATTA CAGACAAATT
541 GTGCAATTAG TTATTATTTT TATATATATT TAATGCTCT
Predicted gene structure (within gDNA segment 32501 to 35740):
Exon 1 34677 34808 ( 132 n); cDNA 448 579 ( 132 n); score: 0.856
MATCH 21326110+ SBtuc02-10-21.1543+ 0.856 132 0.228 C
PGS_21326110+_SBtuc02-10-21.1543+ (34677 34808)
Alignment (genomic DNA sequence = upper lines):
GCACTGTAGC ACTTTCGTTT GTATTTGACA AATATTGTCT AATCATAGAC TAACTAGGCT 34736
||||||||| ||||||||| |||||||||| ||| ||||| |||||| ||| ||||||||||
ACACTGTAGC ACTTTCGTTC GTATTTGACA AATGTTGTCC AATCATGGAC TAACTAGGCT 507
CAAAAGATTC GTCTCGGCAA TTCCGACCAA ACTATGCAAT TAGTTTTTAT TTTTGTCTAT 34796
||||||||| |||||| || || | ||| | | |||||| ||||| |||| |||| | |||
CAAAAGATTT GTCTCGTAAA TTACAGACAA ATTGTGCAAT TAGTTATTAT TTTTATATAT 567
ATTTAATACT CC 34808
||||||| || |
ATTTAATGCT CT 579
********************************************************************************
EST sequence 177 +strand (File: 11921557+)
1 ATGCGCTCCA TCGGTATCCC GCTACCAGCA GACCAGCTTG AGGTGTTGCA GGATAACCTA
61 GAATGGGAGG ACGTGCAGTG GTCGCAGACC AGCGTCTGGG TGGCTGGGAA GGAGCATCCC
121 CTCGCTCGAG TGCACTTCCT CTCGGCGAAC TAGAAGCTAC TGATGTTTTT TTGGAACCAA
181 CAAAATAGTG AACTATCAAT CATTTCTTCC GGGCAAGAAA CTAAAGGAGC CTATGAACAT
241 TGCGTTCTCT TCTACTACTG TTACGTGTAT GTTTGATGCT ATGCTCCATG ACATGTGTAA
301 AAAAGAGTTC ACTTGTGGTA CGTTATTTGT GTGGTACTCC CTAACACAGT ACTTCCTCCA
361 TTCATCTATC TTCTTCGTCT AAGGCCTTCT TGAGATCTTT TTTTTTATTT TGGTACGGTA
421 GCACTTTCGT TTTTATTTGA CAAATATTGT CCAATCATGG AGTAACTAGA TTTAAAAGAT
481 TCGTCTTGTA TT
Predicted gene structure (within gDNA segment 32297 to 35085):
Exon 1 34677 34757 ( 81 n); cDNA 413 492 ( 80 n); score: 0.840
MATCH 21326110+ 11921557+ 0.840 81 0.165 C
PGS_21326110+_11921557+ (34677 34757)
Alignment (genomic DNA sequence = upper lines):
GCACTGTAGC ACTTTCGTTT GTATTTGACA AATATTGTCT AATCATAGAC TAACTAGGCT 34736
| || ||||| |||||||||| ||||||||| ||||||||| |||||| || ||||||| |
GTACGGTAGC ACTTTCGTTT TTATTTGACA AATATTGTCC AATCATGGAG TAACTAGATT 472
CAAAAGATTC GTCTCGGCAA T 34757
||||||||| |||| | | |
TAAAAGATTC GTCT-TGTAT T 492
********************************************************************************
EST sequence 22 +strand (File: SBtuc02-10-21.11198+)
1 GCACGAGGCA AGAGTGTACA AGGAAGAAGA AGCACCAGCA GCTTTTCTTG ATGCTACCTT
61 GATCCATCAG CAGCAGCTTC TTCGTCTGCT TTTTGGGGAG ATTATTAGGA GTAGGAGTAG
121 GATTACTAGT TATTTGATTA TTACTAGTAG CTAGGGAGTG ATCGAGCGAG GATGTTGGCG
181 GTGTTCAGCG GCGGTGTGGT GGAGGTGCCG GCGGAGCTGG TGGCGGCGGG AAGCCGGACG
241 CCGTCGCCCA AGACCAGGGC GTCCGAGCTC GTCGGCCGGT TCCTGGGTGC CTCCGAGCCG
301 GCCGTCTCCG TGCAGCTCGG CGACCTCGGC CACCTCGCTT ACTCCCACAC CAACCAGGCA
361 CTCCTCCGCC CAAGGTCGTT CGCGGCGAAA GACGAGGTGT TCTGCCTGTT CGAGGGTGTG
421 CTGGACAACC TGGGGCGGCT GAGCCAGCAG CACGGGCTGT CCACCAAGGG CGCCAACGAG
481 GTGCTCCTCG TCATCGAGGC CTACAAGACG CTCCGTGACC GGGCGCCCTA CCCGGCCAGC
541 TTCATGCTCG CACAGCTCAC CGGCAGCTAC GCCTTCGTGC TCTTCGACAA GTCCACCAAC
601 TCCCTCCTCG TCGCATCTGA TCCTGAGGGC AAGGTGCCGC TCTTCTGGGG GATCACTGCT
661 GATGGCTGCG TCGCCTTCTC TGATGACATT GACATGCTCA AAGGATCATG TGGCAAATCG
721 CTCGCGCCTT TCCCACAAGG TTGCTTCTAC TCTAACGCCC TTGGAGGCCT GAAGTGCTAT
781 GAGAACCCCA AGCACAAGGT CACTGCTGTT CCTGCAGACG AGGAAGAAAT CTGTGGTGCA
841 ACTTTCAAGG TGGAAGGGTC TACAGTCCTG ACAGCGCTGC ATTTTTAGGA GATTTCCGTG
901 TGGAAGCGTG GGTGGAGCGC AATGCAATGC AGAACTGTTG TACATGCATG GTGGATTGGT
961 GGTGTAACAT AGTGGCAAGT CATGTTCATG CAACTGAGTC TATCTGTGTA ATGCATCTTT
1021 CATAAAAAGA GAAGTACTGG AGGCACTTAA GGGTTGATGG TTGTGTGTGT ACCCTGTATC
1081 CCTAGGTGTT CAACTTACAT GGAACTTGGG TGGTTGAGAC ATGGTGCTAA TATAATCGAT
1141 CGGTTGCGTG GAATATGTGA AGTTTGTAAT CTGTTCCTAA TAACAAAGCT TTGTTTCTCC
1201 AAAAAAAAAA AAAAAAAAAA AAAAACTCGA GACTAGTTCT CTCCCTCGTG CCGAATTCGG
1261 CACGAGGAAT CTTTTGAGTC TGTAATTCTA GTTCTCTAAA CTTGTTAAGC AATGCATCAT
1321 GTATTACTTT TGCTTTTATT TGGTAATTAT TGTCTAATTA TAGACTAACT AGGCTCAAAA
1381 GATTTATCTC GGATTTACAG GTAAACTGTG CAATTAATTT TTATTTTCCT CTATATTTGA
1441 TATTTCATGT CGTAAAATTC GATGTGACGG AGAATTTTAA AAAGACTAAA CAAGGCAGGC
1501 CTAAACTTGT AAAATGATGC ACCGTTGGCC CATTATATTT CTCTGCAGTG CACCACTTAT
1561 CGAGCATCAC ACA
Predicted gene structure (within gDNA segment 27626 to 35572):
Exon 1 31403 31438 ( 36 n); cDNA 1274 1304 ( 31 n); score: 0.639
Intron 1 31439 31594 ( 156 n); Pd: 0.000 (s: 0), Pa: 0.959 (s: 0)
Exon 2 31595 31613 ( 19 n); cDNA 1305 1320 ( 16 n); score: 0.632
Intron 2 31614 34681 (3068 n); Pd: 0.736 (s: 0), Pa: 0.000 (s: 0.82)
Exon 3 34682 34850 ( 169 n); cDNA 1321 1482 ( 162 n); score: 0.805
MATCH 21326110+ SBtuc02-10-21.11198+ 0.805 224 0.142 C
PGS_21326110+_SBtuc02-10-21.11198+ (31403 31438,31595 31613,34682 34850)
Alignment (genomic DNA sequence = upper lines):
GTGATTTTGG TACTATGATA GTTCATACTG AAGATGGCGA CGAAGTGGCA GAATCACCCA 31462
||| | | | || | | || |||| | || || ||
TTGAGTCT-G TAAT-TC-TA GTTC-T-CTA AACTTG.... .......... .......... 1304
TTTTCCCAAG AACAGAGTTC ATACCTGGCC TTGGTAGCAT CAATTCTTTC ACACATGATC 31522
.......... .......... .......... .......... .......... .......... 1304
CAAAGAGAGC GGAACTTATT TCAAGTTTTT GGTATGAGAA ACATACATTT ATCTTATTGT 31582
.......... .......... .......... .......... .......... .......... 1304
TTCTGTTTTC AGTCATACAA AGCAGCTCAA TGTGAAGTTT TTATTTATCC CATCACAAAT 31642
| | ||| ||| || | |
.......... ..TTAAGCAA TGCA--TC-A T......... .......... .......... 1320
CTTATGCACA GTTTCTTGAT AGGGCGGAGA ACACAGGTGA TAGTGATGCC AATAAAGATC 31702
.......... .......... .......... .......... .......... .......... 1320
GGGATTTAGA TGATCGTCCT GACATACAGG AATCAAAAGC AATCCCACCT TTAACTGGAA 31762
.......... .......... .......... .......... .......... .......... 1320
CAGTGAAGAA GCATATTGGT GCAGAAGGGA CTATAAGACG CCATGATAAT CAAGTTAATT 31822
.......... .......... .......... .......... .......... .......... 1320
TGTCACCAGG ATTTGCGAAC ACAACTAAAT TGAACAGCAG CCCGAGCCGC AAAGCGTTTT 31882
.......... .......... .......... .......... .......... .......... 1320
CGGTTCAGGA TAAGGTATGG TTCATGGTTT AGACATCAGC TATTTGTTCC CTTGTCTGAG 31942
.......... .......... .......... .......... .......... .......... 1320
GCTAAGGTAT TTTAGATTTA GCTATTGCAC ACATTCCCCT TTGAGCCCCT TGTCTAATTC 32002
.......... .......... .......... .......... .......... .......... 1320
GCCAGCATTT CTATGACTTC ATTGTAGCTC TGGTCACCCT TTGAGCCCCG TGTCTAATTC 32062
.......... .......... .......... .......... .......... .......... 1320
GCCAGCATTT CTATGACTTC ATTGTAGCTC TGGTCAATTT ATGCTGCCGG CAACACTGTA 32122
.......... .......... .......... .......... .......... .......... 1320
CCAATACCAT TTCTTAAGGC AATCGACATT TCACCACTAG CTCTAGTATC AGAAAATGAA 32182
.......... .......... .......... .......... .......... .......... 1320
GCAGGAAATG GCCTGGCTGG GTCAAGTACA AATGATGCCT TGGAGGCAGT TAGGGAGCTG 32242
.......... .......... .......... .......... .......... .......... 1320
TTCAGTGGTG ATGGGCAGGC AAAGAAAGGA CGGAAAGGGC AAAACGAAGT ATGTGGTAGA 32302
.......... .......... .......... .......... .......... .......... 1320
TTCTTTTCTT TAGCTCTTGC AGAGTGACCT AACTTTTAAA GCTTGCAGAG GGATACTTAG 32362
.......... .......... .......... .......... .......... .......... 1320
TCTAATACTG CATTTGGTGC ATTAGGTCCC TCTTCCTCCG GGTGTGCACC ACAGGCTAAT 32422
.......... .......... .......... .......... .......... .......... 1320
GACAAGCCCC ACACTGATGA ACCTGGCTCA AGCGTTAGCG TATCATAAAA CGTGAGTTCA 32482
.......... .......... .......... .......... .......... .......... 1320
TTTGAACTAC TCTATGCTGC TAGTGTTTTT ATTTTCTCGC AATATGACTG AAGTAAATAG 32542
.......... .......... .......... .......... .......... .......... 1320
CTTTTCTCCT TGTCTTCTGT GAATGTTTTA GGTGCTACGA GGACATGCCT CTACAAGATT 32602
.......... .......... .......... .......... .......... .......... 1320
CACAAGCGAC GCAAGAGCAG CAGACGATAC AAAATCTTTG TGATACACTT CGAACCATAC 32662
.......... .......... .......... .......... .......... .......... 1320
TGAGGTTGTA GATTTGCAAG AGTGAAGGTT ACAACCTTTG GAGTTCTGAA GCGCTGCATG 32722
.......... .......... .......... .......... .......... .......... 1320
GAGCCAAGGG TGAACATGGC TTCTCATGGT GGACACTGAA CCTGCTCGGG GTGGAGCCCC 32782
.......... .......... .......... .......... .......... .......... 1320
AAGGATCGAA GGAAGGCATG ACATCTGTGT ACCTTGGAGC AGGCCTAATG ACAACTGCGT 32842
.......... .......... .......... .......... .......... .......... 1320
TTGAGCTTGT GGACGGCTGG ACGCTTTGGT GACTGGAAGC TGATTGACAC AGGGATTTCT 32902
.......... .......... .......... .......... .......... .......... 1320
GTGGGGAGTG GAAATTTCTG TCTCTGTTAA TAGCCTCTAG GGGTTTCAGC GGTCGGTGTA 32962
.......... .......... .......... .......... .......... .......... 1320
TGTAGAGACT GCATCGACAT TTTGCTAATC AAATTTTGCG GCAGTAATGC CTATTGTAGT 33022
.......... .......... .......... .......... .......... .......... 1320
CTGGTTTTCA ATCGTTGACA ATGCAATTGT CTTCCTCCAA ATAAAGAGAA ATAGTTGAGC 33082
.......... .......... .......... .......... .......... .......... 1320
AGGAATAAAA AAAATGATTT AGGTTGGCTA TCCGAAATCA TGGGCGGCGT GATTTATGCT 33142
.......... .......... .......... .......... .......... .......... 1320
GCCATGTCCG CCTATTCCTT GTGCCTGGTC ATTATACGCC ATGCTTCGTG TTGTTACAAG 33202
.......... .......... .......... .......... .......... .......... 1320
TGCCAGTTCA TTAACCGCGC GTGTGAACGG CGTGCTTCTT GTTAATGGTT GCTTAACGCC 33262
.......... .......... .......... .......... .......... .......... 1320
TGTCCCAGTT GAGGTCGGGA ACATGGAAAT ATTCGGGCTG TTACTGACCA TCCATCTCGA 33322
.......... .......... .......... .......... .......... .......... 1320
GTTGACAGGT ACGCTATGTT CTGTGAACAG AGCGCGTTCC ACGTAAGCAA AATTTCTGCT 33382
.......... .......... .......... .......... .......... .......... 1320
TGCTGCTAGC CCAACCTGAT GTTTCAAACT TGGATCATGG GTACTATCTT GGTTTTTGTC 33442
.......... .......... .......... .......... .......... .......... 1320
CGGAAATAAC CAAATCCGGC GGGACAGCTG AAAGGTAGAC GTGACAACAT AGGTCGGATG 33502
.......... .......... .......... .......... .......... .......... 1320
CCGCATCCTA CCAAACCACC GTGGCAGCGA CTACTTACAC TTTGCCCCCA ATACTCAACG 33562
.......... .......... .......... .......... .......... .......... 1320
AAGATGCCAA TTGCCAATCA TCAAAATCTA GGGGAGAGGA GGGCCGGCCA GTGATGTGCA 33622
.......... .......... .......... .......... .......... .......... 1320
TTTGTAGTGG TGCTACCTAA TTAGGTATCC CTGAAGATTT GTATGGTTTG TTTGTGTCAG 33682
.......... .......... .......... .......... .......... .......... 1320
TACATGTGTC TTATTAGGTA TCCTCTTTAC AAAATTGCAT AGAAAGAGAA AGCATGAAAC 33742
.......... .......... .......... .......... .......... .......... 1320
ATAACATAGG AGTACTATTA TAAGTTAGTG CATACACCGA TGTACAATCT TGGTTCAGTT 33802
.......... .......... .......... .......... .......... .......... 1320
CCTTAGGTTC ATTTATTCTT TTCCTTTTCT TTGTTTGAAA CATCCAGATT AGTTCATTTT 33862
.......... .......... .......... .......... .......... .......... 1320
GATGTATTTT TCGATTGATC TATCTATCTA AAGAAAAATA AACTTGTATT GTCATGTGCC 33922
.......... .......... .......... .......... .......... .......... 1320
AGGTAATTGG ACTACACGTG TTCTATTTTC GAAGGGACAG CAAAAGATTT TGCTTTGCCA 33982
.......... .......... .......... .......... .......... .......... 1320
TAAATAATGT AAAGAGAATT TGACCTTGAT TATAAGGAAA AACATTTCCG AAAAAACATA 34042
.......... .......... .......... .......... .......... .......... 1320
CAATTAGGAT ATAAGCGCGA TACAACTTGA GTTAATAAAT CACGCACAAC TTCGTTGGTC 34102
.......... .......... .......... .......... .......... .......... 1320
CACTGACCAT GCAAAGTAGA AATACACAAC TTCGGGCAAA ATAACGCCGG TTTCGAGGTT 34162
.......... .......... .......... .......... .......... .......... 1320
TGATACATAG TCTTTTTAGG TGCCTCCGTG GTGATCCAGG AAGAGTTCAC CAACCTAGAG 34222
.......... .......... .......... .......... .......... .......... 1320
ATCTTAGAAG CAATGGGAGT CTAAAGATCA AATAACTAGA CCGATAATCT AATCACTCAG 34282
.......... .......... .......... .......... .......... .......... 1320
CACTTCAACC CGCCTAAGAG AGCAACACTA TAAGCGTGAT ATGTGTCTAT ATTCTTCATT 34342
.......... .......... .......... .......... .......... .......... 1320
TTGAATTTTG GCTTCAAGAA AGCTAAAAAA AACCCAAAAG CACCTGGGAG CCCGTGTCTA 34402
.......... .......... .......... .......... .......... .......... 1320
TCTCCGCCAA CATCAGGAAA ATGTTGACAT TTTGGATGGA ACTAAATACA CCCATAAAAA 34462
.......... .......... .......... .......... .......... .......... 1320
ATGGTATTTT GCATTTCATC TTTCAAAGTA CTTGGCATTT TGTATTTTGC ATTCCATGGA 34522
.......... .......... .......... .......... .......... .......... 1320
AAACTAAACA CACCCCTATT TTAGTATGCG TGCATATATA AATGTTTACG TCTGTGTTAC 34582
.......... .......... .......... .......... .......... .......... 1320
CACAAAAGTA AACATCAAAA TAGTTTCCTA TGTGACATGG GTCATCACAC CAATGATCAA 34642
.......... .......... .......... .......... .......... .......... 1320
GGCCTTGTTT AATTCAAAAA AATTTGCAAA ACAGGCACTG TAGCACTTTC GTTTGTATTT 34702
| || ||||| | || |||||
.......... .......... .......... .........G TATTACTTTT GCTTTTATTT 1341
GACAAATATT GTCTAATCAT AGACTAACTA GGCTCAAAAG ATTCGTCTCG GCAATTCCGA 34762
| || |||| ||||||| || |||||||||| |||||||||| ||| ||||| | | || |
GGTAATTATT GTCTAATTAT AGACTAACTA GGCTCAAAAG ATTTATCTCG G-ATTTACAG 1400
CCAAACTATG CAATTAGTTT TTATTTTTGT CTATATTTAA TACTCCATGC ATATGTCTAA 34822
||||| || |||||| ||| ||||||| | |||||||| | || | |||| | | |||
GTAAACTGTG CAATTAATTT TTATTTTCCT CTATATTTGA TATTTCATG- -T-CG--TAA 1455
AGATTCGATG TGACGGAGAA TTTGAAAA 34850
| |||||||| |||||||||| ||| ||||
A-ATTCGATG TGACGGAGAA TTTTAAAA 1482
********************************************************************************
EST sequence 187 +strand (File: 13588150+)
1 ACCCCCTAGT TATACTTGTT GAGTACGATA TGTGCTCACT CTTGCAATTT CCCCCACACT
61 TCAGGAGATG CTTTAGGCTT GTGATCAACC AGTCAGTTTG ATCCTGTGGA GGAGTTAATA
121 CCCGAAGTTT GGAGTTATCT ATCCGCTGTT TGATACTGAA GATTATCTCT TTTATACTAA
181 GAACGTTATA TATTTATGCA TTGTCTTTTG ATATTCCCTC TTATTTGTAG CTATATGTGA
241 GATTTGTTTT CTAAAACTCA CATATGGTGC ATATCTGGTT TTGTCCTTAA AATCGGGTAT
301 TACACATTTT CGTTTGTATT TGACAAATAT TGTCTAATCA TGGACTAACT AGGCTCAAAA
Predicted gene structure (within gDNA segment 33229 to 35421):
Exon 1 34686 34741 ( 56 n); cDNA 305 360 ( 56 n); score: 0.964
MATCH 21326110+ 13588150+ 0.964 56 0.156 C
PGS_21326110+_13588150+ (34686 34741)
Alignment (genomic DNA sequence = upper lines):
CACTTTCGTT TGTATTTGAC AAATATTGTC TAATCATAGA CTAACTAGGC TCAAAA 34741
|| ||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||||||
CATTTTCGTT TGTATTTGAC AAATATTGTC TAATCATGGA CTAACTAGGC TCAAAA 360
********************************************************************************
EST sequence 225 -strand (File: SBtuc02-10-21.1701-)
1 CAGATAAACT GTGTAATTAG TTTTTATTTT TGTCTTTATT TAGTGCTCCA TACATGCGAC
61 CAAAGATTCG ATGTGACGGA GAATCTTTAA AATTTTTGCG AACTGAACAA GGCCTAAGCT
121 GAAGCCCCTG ACTGAGCGTA TGAGAATCCT GCAGCTTGGC TATCTTTATC GCTTGATCTT
181 CGTTTCATCG TTTTCTTAAT CTCCTCCTCC TTCTTGTCGA CAAACTGGAT CAGCTCTTTG
241 AAGCTGCCAA GGCGTGATAG TCGCCGCTGT CTTATGACAG GACCAGGGGT GGCTGCGCTG
301 GGCTCGCCAG AAGATTCAGA ACTGGAGTAC TGGTTGTACT GCCAGCAGAC CCGTATGAAG
361 AATACCAGCA GAGCGAAGAG GCATATCAGG GCACACACAA GGAAGAGGCC CCAAAAGCTT
421 CCGAGGCCAA GCCTGGTTGC TCCCACTTCG CTGTCATCTG AGGAGCAACT AGACCGTGAG
481 AACCACTCGT CGTGGATTCT CTGAAGTTGG CCACTCTCTG AAAGTTGAAG GATGGCGGTT
541 GATAAATCTG CAGCGAGGGG GGAGTCTCTC TGGAATGCAA AGCCCCAT
Predicted gene structure (within gDNA segment 34810 to 38533):
Exon 1 35134 35218 ( 85 n); cDNA 1 84 ( 84 n); score: 0.871
Intron 1 35219 35850 ( 632 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0)
Exon 2 35851 35882 ( 32 n); cDNA 85 117 ( 33 n); score: 0.781
MATCH 21326110+ SBtuc02-10-21.1701- 0.871 117 0.199 C
PGS_21326110+_SBtuc02-10-21.1701- (35134 35218,35851 35882)
Alignment (genomic DNA sequence = upper lines):
CCGACCAAAC TGTGTAATTA GTTTTTATTT TCGTCTATAT TTAACACTCC ATGCATGCGT 35193
| || |||| |||||||||| |||||||||| | |||| ||| ||| |||| || ||||||
CAGA-TAAAC TGTGTAATTA GTTTTTATTT TTGTCTTTAT TTAGTGCTCC ATACATGCGA 59
CTAAAGATTC GATGTGACGG AGAATATGAA AAATTTTACA AAATTTTTTC GGAAGTAAAC 35253
| |||||||| |||||||||| |||||
CCAAAGATTC GATGTGACGG AGAAT..... .......... .......... .......... 84
AAGGCCCTAG TACTCGACTG CTACCGGGGA CGACGGTACG GTGGAAGCAG GCGCCTGTCG 35313
.......... .......... .......... .......... .......... .......... 84
AGCATCTCCA GTGCTAAATC GAACAAAACT GACAAGGTTC GGTTGAGTGC AGTACGGTTT 35373
.......... .......... .......... .......... .......... .......... 84
GAGAGAGCTG CAGTGTGGCG TCGGTGTTTG CTCCAAACAA ACATTAAACA AATTGGAAGT 35433
.......... .......... .......... .......... .......... .......... 84
GACCCTGCCT AGGAGGTTTC ACACACAACA TTATCAATGG CTTGTCCTGT ATAAAGATTT 35493
.......... .......... .......... .......... .......... .......... 84
TTTTATTGAA ACAGTCACGG CACGGTTTGG TGCTTGAGTT TGGTTCGCTT TTAGTTCTGA 35553
.......... .......... .......... .......... .......... .......... 84
CAACGAGCAG CCGAACCGTC TAGTGTTCTC GGTTCGATTT GCTTCTCCCT CGGTTCGATT 35613
.......... .......... .......... .......... .......... .......... 84
CTGCGATACA CTAGAGGTGC CCTTAGGCGT TGTTTAGATG CATCAAAAAC CCCAAACTTT 35673
.......... .......... .......... .......... .......... .......... 84
ACAAGATTCT CATCACATCG AATCTTGCAA CACATGCATA GAACATTAAA TATAGAAAAA 35733
.......... .......... .......... .......... .......... .......... 84
AAAGATAACT AATTGCACAG TTTACCTGTA AATCACGAGA CAAATCTTTT AAGCCTAGTT 35793
.......... .......... .......... .......... .......... .......... 84
GCTCTATGAA AGAACAATGT TTGTCAAATA AAAACAAAAA TGCTGCAGCA TCAAAATCCA 35853
|
.......... .......... .......... .......... .......... .......CTT 87
AAAAATTTTT G-GATCTAAA CAAGGCCTAA 35882
||||||||| | || || || ||||||||||
TAAAATTTTT GCGAACTGAA CAAGGCCTAA 117
********************************************************************************
EST sequence 12 +strand (File: OStuc02-10-21.4951+)
1 CGGACGTGNG GTNTNCTGGT AGCATCACAT ACGCTAATAA TGGATTAATT AGGCTCAATA
61 GATTCATCTC GCAAATTAGT CCAGGGTTAT GGAATAGGCT TTATTATTAG TCTATGTTTA
121 ATACTTCTAA ATAGTGTCCA AACATTCGAT GTGACAGGGA TTGAAAAATT TTAGCCCCAT
181 CCAAACCCAA TCTAAACCAT TATTGTTATT ACTTTTTATT GTGCATTACT ACCATTCCAC
241 CATTCCATCG TGATGTTACT ACAAGTGTAC CATAACAACT ATATTTTATG CAGTAACATA
301 GCGTGTAGGT ATTACTGCAA TAACATGTGG GTAACTACCG AACACATGGC CAANGAACTA
361 CCATCCACCT TGAACTAGCA AAGCTAAGTG CAAGTGATAT ATTT
Predicted gene structure (within gDNA segment 34521 to 36691):
Exon 1 34725 34855 ( 131 n); cDNA 44 172 ( 129 n); score: 0.740
MATCH 21326110+ OStuc02-10-21.4951+ 0.740 131 0.324 C
PGS_21326110+_OStuc02-10-21.4951+ (34725 34855)
Alignment (genomic DNA sequence = upper lines):
ACTAACTAGG CTCAAAAGAT TCGTCTCGGC AATTCCGACC A-AACTATGC AATTAGTTTT 34783
| ||| |||| ||||| |||| || |||| || || | | || | |||| || ||| ||
ATTAATTAGG CTCAATAGAT TCATCTC-GC AAATTAGTCC AGGGTTATGG AA-TAGGCTT 101
TATT-TTTGT CTATATTTAA TACTCCATGC ATA-TGTCTA AAGATTCGAT GTGACGGAGA 34841
|||| || || |||| ||||| |||| | | ||| |||| | || ||||||| ||||| | ||
TATTATTAGT CTATGTTTAA TACTTC-TAA ATAGTGTCCA AACATTCGAT GTGACAGGGA 160
ATTTGAAAAA TTTT 34855
|| |||||| ||||
-TT-GAAAAA TTTT 172
********************************************************************************
EST sequence 233 -strand (File: 7218093-)
1 TTGGCGTGGA CACGTGAGTT GACACCACAG CCTTGGATGT AAACCGAAGT GGTGGCCCAA
61 ATTCCATCCT TTCACTAAAT TTGAGAAAAA TGAAAGATCA AATGCTAACT CAAAACTCAA
121 AGTTGAAAGG ACAAAAACCT GTGTAGCATA GCAATTAGGC AAGTATTTAT CAATGAGGCC
181 TTGTTTAGTT TCAAGACGAA AAGTTTTTGT GTGTCACATC AAATATGTCG GCACATATTT
241 AAAGTACTAA ACATAGACTA ATAAAAAAAC AAATTACATA ACTTGCCTGG AAAGTGTGAG
301 ACGAATTTAT TAAACCTAAT TAATCCGGCA TTAGCACATG TGGGCTACTG TAGCAGCTAT
361 GGCTACTTAT GGGCTAATTA GGCTTAAAAG ATCCATCTCG CGATTTACAA CCAAACTGTG
421 CAATTAGTTT TCGTTTTCGT CTACATTTAA TGCTCCATAC ATATGTCCAA AGATTTGATG
481 TGATGGATAA AAAGTTTTTT TGGGTGAAGA ACTAAACAAG GACTAAGTGA AGCAAATCAT
541 CACCAATCAA GAGAAATAAA CCCTCTTTGA TCGTGCCTCG TGC
Predicted gene structure (within gDNA segment 33462 to 35491):
Exon 1 34725 34841 ( 117 n); cDNA 373 489 ( 117 n); score: 0.821
MATCH 21326110+ 7218093- 0.821 117 0.201 C
PGS_21326110+_7218093- (34725 34841)
Alignment (genomic DNA sequence = upper lines):
ACTAACTAGG CTCAAAAGAT TCGTCTCGGC AATTCCGACC AAACTATGCA ATTAGTTTTT 34784
|||| |||| || ||||||| | ||||| | || | ||| ||||| |||| |||||||||
GCTAATTAGG CTTAAAAGAT CCATCTCGCG ATTTACAACC AAACTGTGCA ATTAGTTTTC 432
ATTTTTGTCT ATATTTAATA CTCCATGCAT ATGTCTAAAG ATTCGATGTG ACGGAGA 34841
|||| |||| | ||||||| |||||| ||| ||||| |||| ||| |||||| | ||| |
GTTTTCGTCT ACATTTAATG CTCCATACAT ATGTCCAAAG ATTTGATGTG ATGGATA 489
********************************************************************************
EST sequence 34 +strand (File: SBtuc02-10-21.1859+)
1 AGATTCGTCT CGCAAACTAT AGATAAACTG TGCAATTAGT TATTTCTTTT ATCTATATTT
61 AATACTCCAT GCATCTGCCG CAAGATTCAA TGTGACGGAG AATCTAAAAA ATTGTGCAAA
121 TTTTTTTGAG AACTAAACAA AGCCTAAAAA ACACCATCTT TTTATTCGCA ATTTATTTAT
181 TTATTTTTAT TCATCACTTG TTCATGTCAA ATTTGCAAAT TGTGGAATCA AGATTTCAGA
241 CCTACATATT TTTTGTTTCT GTACCACGCA GTCCACTGAG GACTGACTAG GACATGTTCT
301 TTAACCAGGT GACTGAGCTC CTTAGTGTTG GATACATTAA CAGTTCAGTG CAAAACTTAT
361 ATTATTGCAT ATATAGTTTG CTAATGTTCT ATTTCTTTTA TTTCTATTTT TCTGCTTTTA
421 CCTATAGTAA TCAGTAGTTT CTAAATATTG TGGACTGCAG TTCCGTGTTC TTATCATCGT
481 AGCTAATAAT AGGGATTTTG GTTGTAGACA TTGGTGCAAT TTAATTTGGT TCTGGTTGAT
541 GATCCGTGTT CAGATATATG CACACAGCAA TAGACTTGAA CAAGTTCTCA ACTTCAGTGA
601 GCAACANAGG A
Predicted gene structure (within gDNA segment 34441 to 37596):
Exon 1 34741 34886 ( 146 n); cDNA 1 147 ( 147 n); score: 0.815
MATCH 21326110+ SBtuc02-10-21.1859+ 0.815 146 0.239 C
PGS_21326110+_SBtuc02-10-21.1859+ (34741 34886)
Alignment (genomic DNA sequence = upper lines):
AGATTCGTCT CGGCAATTCC GACCAAACTA TGCAATTAGT TTTTATTTTT GTCTATATTT 34800
|||||||||| || || | ||||| |||||||||| | || |||| |||||||||
AGATTCGTCT CGCAAACTAT AGATAAACTG TGCAATTAGT TATTTCTTTT ATCTATATTT 60
AATACTCCAT GCATATGTCT AAAGATTCGA TGTGACGGAG AATTTGAAAA ATTTTGCAAA 34860
|||||||||| |||| || | ||||||| | |||||||||| ||| | |||| ||| ||||||
AATACTCCAT GCATCTGCCG CAAGATTCAA TGTGACGGAG AATCTAAAAA ATTGTGCAAA 120
-TTTTTTGGG AACTAAACAA GGCCCAA 34886
||||||| | |||||||||| ||| ||
TTTTTTTGAG AACTAAACAA AGCCTAA 147
********************************************************************************
EST sequence 211 -strand (File: SBtuc02-10-21.10184-)
1 TCGTGATTTA CAGTCAAACT GTGTGATTAG TTTTTATTTT TGTCTATATT TAATGCTTCA
61 TGCATGTGCC GCAAGATTCG ATGTGATAGG AAATCTTGAA AACTTTTTGG ATTTCGGGGT
121 GAACTAAACA AGGCCTGCAT GACTCAGTAG CTGTGGACGT CACTTCATTT CCGACCCTCA
181 CATTGAAATA TGCTGGCTGC TTAGGCTCAG CCACGATCAT AGCCGTCTCA CTGCTTAGGC
241 TTAGCATTGC AACAACCTCT GCCATGGTCG GTCGATCAGT CGCATTTTCT TGTACACATA
301 ACAGTGCAAT CTTAATGCAC TTCGTCATCT CTGCCGAGTG ATTCTTGGGA GCCAAAGATG
361 CATCAACTAG ATCAATCCAC CTTCCATCGT CCCATAATTG CCATGCATAT CCAATGAGAT
421 TGATGAAATC GCCACACTGA TGGCTACCGG AATTCCGTTT TCCACTAATG ATCTCAAGAA
481 CAAGTACACC AAAGCTGAAT ACGTCGGACT TGATAGAGAA GATGCCCTCC GAAGCATACT
541 CAGGTGCCAT GTAGCCATAT GTACCAACTA CTCTTCTTGT AGTGTTTCCT TCAACGTTAT
601 TTGAGCTGAA TATTTTTGCT AGACCAAAAT CTGAAATTTT TGG
Predicted gene structure (within gDNA segment 34720 to 38715):
Exon 1 34750 34880 ( 131 n); cDNA 1 132 ( 132 n); score: 0.756
Intron 1 34881 37536 (2656 n); Pd: 0.000 (s: 0.67), Pa: 0.535 (s: 0)
Exon 2 37537 37548 ( 12 n); cDNA 133 143 ( 11 n); score: 0.833
Intron 2 37549 37797 ( 249 n); Pd: 0.000 (s: 0), Pa: 0.853 (s: 0)
Exon 3 37798 37819 ( 22 n); cDNA 144 163 ( 20 n); score: 0.591
MATCH 21326110+ SBtuc02-10-21.10184- 0.756 165 0.257 C
PGS_21326110+_SBtuc02-10-21.10184- (34750 34880,37537 37548,37798 37819)
Alignment (genomic DNA sequence = upper lines):
TCGGCAATTC CGACCAAACT ATGCAATTAG TTTTTATTTT TGTCTATATT TAATACTCCA 34809
||| | || | |||||| || ||||| |||||||||| |||||||||| |||| || ||
TCGTGATTTA CAGTCAAACT GTGTGATTAG TTTTTATTTT TGTCTATATT TAATGCTTCA 60
TGCATATGTC TAAAGATTCG ATGTGA-CGG AGAATTTGAA AAATTTTGCA AATTTTTTGG 34868
||||| || | |||||||| |||||| || | | ||||| || |||| | || |
TGCATGTGCC GCAAGATTCG ATGTGATAGG AAATCTTGAA AACTTTTTGG ATTTCGGGGT 120
GAACTAAACA AGGCCCAAGC TGCAAATCCC TAATCACTCG TCATTCTCAT AAATAAAGCT 34928
|||||||||| ||
GAACTAAACA AG........ .......... .......... .......... .......... 132
GAAAAAACTA AATCCAAGTG GGGCACGCAC TTGGACTTTG GCCTCTTGGA CTTGAGTGGG 34988
.......... .......... .......... .......... .......... .......... 132
CGACACGCCG GATCGGCACC GGCACCTAGG GCTTGTTTAG TTCCAAAAAA TTTTGGGAAA 35048
.......... .......... .......... .......... .......... .......... 132
TGGACATTGT AGCACTTTCG TTTGTATTTG ACAAATATTG TCCAATTATG GACTAACTAG 35108
.......... .......... .......... .......... .......... .......... 132
GCTCAAAAGA TTCATCTCGT CAATTCCGAC CAAACTGTGT AATTAGTTTT TATTTTCGTC 35168
.......... .......... .......... .......... .......... .......... 132
TATATTTAAC ACTCCATGCA TGCGTCTAAA GATTCGATGT GACGGAGAAT ATGAAAAATT 35228
.......... .......... .......... .......... .......... .......... 132
TTACAAAATT TTTTCGGAAG TAAACAAGGC CCTAGTACTC GACTGCTACC GGGGACGACG 35288
.......... .......... .......... .......... .......... .......... 132
GTACGGTGGA AGCAGGCGCC TGTCGAGCAT CTCCAGTGCT AAATCGAACA AAACTGACAA 35348
.......... .......... .......... .......... .......... .......... 132
GGTTCGGTTG AGTGCAGTAC GGTTTGAGAG AGCTGCAGTG TGGCGTCGGT GTTTGCTCCA 35408
.......... .......... .......... .......... .......... .......... 132
AACAAACATT AAACAAATTG GAAGTGACCC TGCCTAGGAG GTTTCACACA CAACATTATC 35468
.......... .......... .......... .......... .......... .......... 132
AATGGCTTGT CCTGTATAAA GATTTTTTTA TTGAAACAGT CACGGCACGG TTTGGTGCTT 35528
.......... .......... .......... .......... .......... .......... 132
GAGTTTGGTT CGCTTTTAGT TCTGACAACG AGCAGCCGAA CCGTCTAGTG TTCTCGGTTC 35588
.......... .......... .......... .......... .......... .......... 132
GATTTGCTTC TCCCTCGGTT CGATTCTGCG ATACACTAGA GGTGCCCTTA GGCGTTGTTT 35648
.......... .......... .......... .......... .......... .......... 132
AGATGCATCA AAAACCCCAA ACTTTACAAG ATTCTCATCA CATCGAATCT TGCAACACAT 35708
.......... .......... .......... .......... .......... .......... 132
GCATAGAACA TTAAATATAG AAAAAAAAGA TAACTAATTG CACAGTTTAC CTGTAAATCA 35768
.......... .......... .......... .......... .......... .......... 132
CGAGACAAAT CTTTTAAGCC TAGTTGCTCT ATGAAAGAAC AATGTTTGTC AAATAAAAAC 35828
.......... .......... .......... .......... .......... .......... 132
AAAAATGCTG CAGCATCAAA ATCCAAAAAA TTTTTGGATC TAAACAAGGC CTAAGTGCAC 35888
.......... .......... .......... .......... .......... .......... 132
CTTAAAAATT AAAAAAATTT CAAGATTTTC TGTCACATCG AATCTTGCGA TATATGCATG 35948
.......... .......... .......... .......... .......... .......... 132
ATTGCATTAA ATATAGTCAA AAATAAAAAT TAATTACATA GCTTACCTGT AAATCACGAA 36008
.......... .......... .......... .......... .......... .......... 132
ATAAATCTTT TAAATCTAGT TAGTTCATAA TTAGACAATA TTTATAAAAA ACAAACGAAA 36068
.......... .......... .......... .......... .......... .......... 132
GTGCTACAAT GGCCTTGTTT AGTTCACCCT GAAAACCAAA AAGTTTTCAA GATTTCCCGT 36128
.......... .......... .......... .......... .......... .......... 132
CACATCGAAT CTTGTAACAC ATGTATGAAA CATTAAATAT AGACGAAAAC AAAAACTAAT 36188
.......... .......... .......... .......... .......... .......... 132
TACACAGATT AGCTGAAAAT CACGTGACAA ATTTTTTGAT TCTAGTTAGT CCATGATTAG 36248
.......... .......... .......... .......... .......... .......... 132
ATAATATTTA TCACAAACAA ACGAAAATGC CACAGTACCA AAAACTTTTC ACTTTTCGGA 36308
.......... .......... .......... .......... .......... .......... 132
ACTAAACAAG GCCAATGTAT CAAACCAAAA AATTTTAGGG GCTGTTTGGT TCGTTGTTGA 36368
.......... .......... .......... .......... .......... .......... 132
GTTCAGCCTG GCTTGTATGC GGCAACCAGG CCCTGGCGGT CCAGGCCGAA CTCATGCAGG 36428
.......... .......... .......... .......... .......... .......... 132
CAGCCATTGT TTGGTTGGTC GGTTGATTAG AGCCTGGTTG GGTGCATCAC TTGTTTGGTT 36488
.......... .......... .......... .......... .......... .......... 132
ACCCGTTGCT TTGCCTGCCT GCTGCATCAA CTCTCTCATG CACGAGCCAC AACGCATGCT 36548
.......... .......... .......... .......... .......... .......... 132
CATCCCAGCC TGGCCCGATA GAAACGGAAG TGATCTGCGT TTCTGCGGGG CCTGGCTCAG 36608
.......... .......... .......... .......... .......... .......... 132
CGAGGTGTTT TGTATGCGGG TGGCCTGGCC CTGGCAGCCA TACAACACAC CAAACACGAG 36668
.......... .......... .......... .......... .......... .......... 132
ATTCCTGCAC CAGCGGATGC ATGCACGCGG GCATCAGGCC AACCAAACAC GCCCAGGCCC 36728
.......... .......... .......... .......... .......... .......... 132
AGTCGCGTCC GTCCCCCAGT TTTCTGGCCT TGGCCGTACG TGCCGCGTGC CCCTCTACCG 36788
.......... .......... .......... .......... .......... .......... 132
CGCGCTCCCT GTGCCATGTC CCATACCAAA CTCCCATGTG AATGTGAATT GTGACCACCA 36848
.......... .......... .......... .......... .......... .......... 132
TTCTTCGTCA GTCATTCACC CGCACCCGCA CGGCGCTACG CAACAACAAA AGCAGGTCCG 36908
.......... .......... .......... .......... .......... .......... 132
CTCGTCTCGT CTCCCTCCCT CCCGCGGCTC GGCTCGGCTC ACCTCACCTC ACTCCTCTTC 36968
.......... .......... .......... .......... .......... .......... 132
GTGCGTCGCC TCGCTGCCGC GTCGGGCCAG CGGGTGAGGC GTGACTGGGC TCTCTTCGGC 37028
.......... .......... .......... .......... .......... .......... 132
GCGCGCACCG AGGGACGGCG GCGGCGTCGA TGGGGAAGCA CATGCGCATC AAGACGGCGC 37088
.......... .......... .......... .......... .......... .......... 132
CCAAGGGCAA CCGTGCCCCC CTTCTCGGCG ACGGGGTAGG CCGCCCGCCG TAGGCGCAGG 37148
.......... .......... .......... .......... .......... .......... 132
CTCCTATTCG AATTTGGTTT CTGATGATTG CGCTCCGAAT TTGGTTTCTG ATCATCGAGC 37208
.......... .......... .......... .......... .......... .......... 132
TGGTGCCTGC AGGAGACGTC AAGGGGGCTC ACCGACCTGG AAGAGGGCAG CAACGTCCAG 37268
.......... .......... .......... .......... .......... .......... 132
GTTAGGCGCC CAGCCCCTGC CCTCCTATCC CTTCCTTTCT CCATCTGCCG CACAAGGACA 37328
.......... .......... .......... .......... .......... .......... 132
AACCTCCCAA TTACAAGCGC CGGCTGCATA ACTAATCCTT GCCTTTTTTA TCATTATTTT 37388
.......... .......... .......... .......... .......... .......... 132
GTACATACAA TTGGAATTCT CTCAGCCAGC GAACGTCGGG TTCTGTCGGG TCATCAAACT 37448
.......... .......... .......... .......... .......... .......... 132
TGTGAGTGAG CGCTTGTCTC TTCGATTTTT AGCTCTTTCT CTTGCGCTGA TGTTGGTCAT 37508
.......... .......... .......... .......... .......... .......... 132
GCTGAAACGG ATGAGCACGG GTTTGTAGGC CAAGCATGAC GCCGGGAAGC TGGTCCTCGC 37568
|| | |||||||
.......... .......... ........GC C-TGCATGAC .......... .......... 143
CACTATGGCG CTGCTCGTTG CCTCCCTCAG CAACCTTCTC GTTGTAGGTA CCTGCCACTT 37628
.......... .......... .......... .......... .......... .......... 143
GTTGGAAAGA AAAGCTATTG ATGCTAATGT TTGTTTTTTG TTATCTTTTT CACTTTTTGG 37688
.......... .......... .......... .......... .......... .......... 143
AACAAGGATA GCTGCTAAGC CTTTCCTGTC TTCATGAGGG CTTGAGCACA AGCATGCAGA 37748
.......... .......... .......... .......... .......... .......... 143
AATCTGGTTC CTCTATTAGC AATTAGCATG TATGTTGATT TAAATTCAGC TAGTACCTTG 37808
|||| | ||
.......... .......... .......... .......... .........T CAGTAGC-TG 153
ATGGAATTGA A 37819
|||| | |
-TGGACGTCA C 163
********************************************************************************
EST sequence 252 -strand (File: 14514413-)
1 AGGTAAACTG TGCAATTAGT TTTTATTTTC GTCTATATTT AGTGTTTCAT GTATGTGCTA
61 CAAGATTTGA TGTGATGGAG AATCTTGAAA AGTTTTTGGT TTCTGGGGTG AACTAAACAA
121 GGCCATGTAT GACAAGCATA ACGACACATT CAACTGGACG GTTGAAGGTC GTCCAAATGG
181 TGGGCTATAT ACATTTGAGA ATAATCACAA TCTAATCCAA AGGTACGCAA AGCATGTAGA
241 GATGGTAGCT GTAGATATTA TATACACTTA ACTACTGGCT ATTGTCGAAC CACTGTACTC
301 CAAATTAGCC GTCTTTTGGG CTAAGACCTG CTTGAACCAT TCCACTGACG CCTTGGGAAT
361 CCTTGTCAGG TTGTTGTTGT AGTCAATGTA GTAGAGTCCA AACCGCACCG TGTACCCAGA
421 GTTCCACTCC CAGTTATCTA GCAGTGACCA TACAAAGTAG CCGTGGACGT TGCAGCCTTC
481 CTTCCTTATT GCATC
Predicted gene structure (within gDNA segment 34416 to 37038):
Exon 1 34761 34883 ( 123 n); cDNA 1 124 ( 124 n); score: 0.748
MATCH 21326110+ 14514413- 0.748 123 0.248 C
PGS_21326110+_14514413- (34761 34883)
Alignment (genomic DNA sequence = upper lines):
GACCAAACTA TGCAATTAGT TTTTATTTTT GTCTATATTT AATACTCCAT GCATATGTCT 34820
||||| |||||||||| ||||||||| |||||||||| | | | ||| | || ||
AGGTAAACTG TGCAATTAGT TTTTATTTTC GTCTATATTT AGTGTTTCAT GTATGTGCTA 60
AAAGATTCGA TGTGACGGAG AAT-TTGAAA AATTTTGCAA ATTTTTTGGG AACTAAACAA 34879
|||||| || ||||| |||| ||| |||||| | |||| | | | | ||||||||||
CAAGATTTGA TGTGATGGAG AATCTTGAAA AGTTTTTGGT TTCTGGGGTG AACTAAACAA 120
GGCC 34883
||||
GGCC 124
********************************************************************************
EST sequence 240 -strand (File: 6674746-)
1 ATTTTTATCT ATATTTAATG CTCCATACAT GCAACCAAAG ATTCGATGTG ACAGAGAATC
61 TTGAAAATTT TTGCAAACTA AACAAGGCCT TAGCATGGCA GCTTTTGGTC ACCAACCAAA
121 CAAACCCTAT AATCAAACAG ACCTCTTGGT GTTGCTCGTA CGCACGTCAT TAAAAAAAAG
181 GAACCCATTG GTACGCACGT CATCAAACTT GCTGCAACGG ATCCTGCCTA GGCTATTCTA
241 ATTTCTAAGG CTGTCCTGCG ATTTTTGCTC CTTTCCATTC CTAAGGAGAA TTAACATCAG
301 CAGTCAACGT ATGGTGCACT TAGTACACGA AATGAGTTCA GCTGCAAACA AAAGAAAAAA
361 AAACCTGTGC ACAACCGTCT TCCACATATG AAACTTGTCC ATCATCAAGT GGTAATTA
Predicted gene structure (within gDNA segment 34452 to 36828):
Exon 1 34785 34861 ( 77 n); cDNA 1 78 ( 78 n); score: 0.831
Intron 1 34862 35248 ( 387 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0)
Exon 2 35249 35262 ( 14 n); cDNA 79 92 ( 14 n); score: 0.929
Intron 2 35263 35507 ( 245 n); Pd: 0.000 (s: 0), Pa: 0.913 (s: 0)
Exon 3 35508 35524 ( 17 n); cDNA 93 109 ( 17 n); score: 0.706
MATCH 21326110+ 6674746- 0.831 108 0.258 C
PGS_21326110+_6674746- (34785 34861,35249 35262,35508 35524)
Alignment (genomic DNA sequence = upper lines):
ATTTTTGTCT ATATTTAATA CTCCATGCAT ATGTCTAAAG ATTCGATGTG ACGGAGAAT- 34843
|||||| ||| ||||||||| |||||| ||| | |||| |||||||||| || ||||||
ATTTTTATCT ATATTTAATG CTCCATACAT GCAACCAAAG ATTCGATGTG ACAGAGAATC 60
TTGAAAAATT TTGCAAATTT TTTGGGAACT AAACAAGGCC CAAGCTGCAA ATCCCTAATC 34903
||||||| || |||||||
TTGAAAATTT TTGCAAAC.. .......... .......... .......... .......... 78
ACTCGTCATT CTCATAAATA AAGCTGAAAA AACTAAATCC AAGTGGGGCA CGCACTTGGA 34963
.......... .......... .......... .......... .......... .......... 78
CTTTGGCCTC TTGGACTTGA GTGGGCGACA CGCCGGATCG GCACCGGCAC CTAGGGCTTG 35023
.......... .......... .......... .......... .......... .......... 78
TTTAGTTCCA AAAAATTTTG GGAAATGGAC ATTGTAGCAC TTTCGTTTGT ATTTGACAAA 35083
.......... .......... .......... .......... .......... .......... 78
TATTGTCCAA TTATGGACTA ACTAGGCTCA AAAGATTCAT CTCGTCAATT CCGACCAAAC 35143
.......... .......... .......... .......... .......... .......... 78
TGTGTAATTA GTTTTTATTT TCGTCTATAT TTAACACTCC ATGCATGCGT CTAAAGATTC 35203
.......... .......... .......... .......... .......... .......... 78
GATGTGACGG AGAATATGAA AAATTTTACA AAATTTTTTC GGAAGTAAAC AAGGCCCTAG 35263
||||| |||||| ||
.......... .......... .......... .......... .....TAAAC AAGGCCTTA. 92
TACTCGACTG CTACCGGGGA CGACGGTACG GTGGAAGCAG GCGCCTGTCG AGCATCTCCA 35323
.......... .......... .......... .......... .......... .......... 92
GTGCTAAATC GAACAAAACT GACAAGGTTC GGTTGAGTGC AGTACGGTTT GAGAGAGCTG 35383
.......... .......... .......... .......... .......... .......... 92
CAGTGTGGCG TCGGTGTTTG CTCCAAACAA ACATTAAACA AATTGGAAGT GACCCTGCCT 35443
.......... .......... .......... .......... .......... .......... 92
AGGAGGTTTC ACACACAACA TTATCAATGG CTTGTCCTGT ATAAAGATTT TTTTATTGAA 35503
.......... .......... .......... .......... .......... .......... 92
ACAGTCACGG CACGGTTTGG T 35524
|| || || ||||| |
....GCATGG CAGCTTTTGG T 109
********************************************************************************
EST sequence 183 +strand (File: 13469214+)
1 TCTGACAAGA GCAACGAAGA GAATAATTGA TCTACAGTTT CTTTCCCCCG TCTGAAACTT
61 TGGTTAGCTT AAATCTGGGA CACGTATTGG AACAGGAGTA CCATGGGAGT CTGCACTGCA
121 AAAAAAAAAT GCAGATTATC GATCTTAGAT AGAAGGAAAC ATAGTGGGGG GGAAAGGAAC
181 CTTTTGTTTT CTTTTACTAC AGAAGTATCA ATTCGTGCGT TTGTCCCGGT GTTAGTTTCT
241 TCAGGAAACG GACATTGAAC TTAACAGTGC AATTTTCAGA CTTTGCAGCA AGTGCCATCA
301 GACCACTCCA TTCTGTGTAG ACTCGGCCCT CAGGACGTTG TGGCCAACCT GACTATTCAC
361 ATCTTTTGTG CGCCGCCCGT TTCACTTTCG TGGTGTTTCC TTGTAGCCTT TTTTGTCTGC
421 CATGTTTGCT TGTTGCCAGA CGCTGAATCA GGCACGGCGG GCCTTGTTTA GTTCCAAAAT
481 ATTTTGCAAA ATCGACACTG TAGCTCTTTC GTTTGTATTT GACAAATATT GTCTAATCAT
541 AGACTAACTA GGTTC
Predicted gene structure (within gDNA segment 32410 to 35505):
Exon 1 33906 33924 ( 19 n); cDNA 422 439 ( 18 n); score: 0.684
Intron 1 33925 34992 (1068 n); Pd: 0.608 (s: 0), Pa: 0.000 (s: 0.76)
Exon 2 34993 35112 ( 120 n); cDNA 440 555 ( 116 n); score: 0.825
MATCH 21326110+ 13469214+ 0.825 139 0.250 C
PGS_21326110+_13469214+ (33906 33924,34993 35112)
Alignment (genomic DNA sequence = upper lines):
TTGTATTGTC ATG-TGCCAG GTAATTGGAC TACACGTGTT CTATTTTCGA AGGGACAGCA 33964
||| ||| | || ||||||
ATGT-TTG-C TTGTTGCCAG .......... .......... .......... .......... 439
AAAGATTTTG CTTTGCCATA AATAATGTAA AGAGAATTTG ACCTTGATTA TAAGGAAAAA 34024
.......... .......... .......... .......... .......... .......... 439
CATTTCCGAA AAAACATACA ATTAGGATAT AAGCGCGATA CAACTTGAGT TAATAAATCA 34084
.......... .......... .......... .......... .......... .......... 439
CGCACAACTT CGTTGGTCCA CTGACCATGC AAAGTAGAAA TACACAACTT CGGGCAAAAT 34144
.......... .......... .......... .......... .......... .......... 439
AACGCCGGTT TCGAGGTTTG ATACATAGTC TTTTTAGGTG CCTCCGTGGT GATCCAGGAA 34204
.......... .......... .......... .......... .......... .......... 439
GAGTTCACCA ACCTAGAGAT CTTAGAAGCA ATGGGAGTCT AAAGATCAAA TAACTAGACC 34264
.......... .......... .......... .......... .......... .......... 439
GATAATCTAA TCACTCAGCA CTTCAACCCG CCTAAGAGAG CAACACTATA AGCGTGATAT 34324
.......... .......... .......... .......... .......... .......... 439
GTGTCTATAT TCTTCATTTT GAATTTTGGC TTCAAGAAAG CTAAAAAAAA CCCAAAAGCA 34384
.......... .......... .......... .......... .......... .......... 439
CCTGGGAGCC CGTGTCTATC TCCGCCAACA TCAGGAAAAT GTTGACATTT TGGATGGAAC 34444
.......... .......... .......... .......... .......... .......... 439
TAAATACACC CATAAAAAAT GGTATTTTGC ATTTCATCTT TCAAAGTACT TGGCATTTTG 34504
.......... .......... .......... .......... .......... .......... 439
TATTTTGCAT TCCATGGAAA ACTAAACACA CCCCTATTTT AGTATGCGTG CATATATAAA 34564
.......... .......... .......... .......... .......... .......... 439
TGTTTACGTC TGTGTTACCA CAAAAGTAAA CATCAAAATA GTTTCCTATG TGACATGGGT 34624
.......... .......... .......... .......... .......... .......... 439
CATCACACCA ATGATCAAGG CCTTGTTTAA TTCAAAAAAA TTTGCAAAAC AGGCACTGTA 34684
.......... .......... .......... .......... .......... .......... 439
GCACTTTCGT TTGTATTTGA CAAATATTGT CTAATCATAG ACTAACTAGG CTCAAAAGAT 34744
.......... .......... .......... .......... .......... .......... 439
TCGTCTCGGC AATTCCGACC AAACTATGCA ATTAGTTTTT ATTTTTGTCT ATATTTAATA 34804
.......... .......... .......... .......... .......... .......... 439
CTCCATGCAT ATGTCTAAAG ATTCGATGTG ACGGAGAATT TGAAAAATTT TGCAAATTTT 34864
.......... .......... .......... .......... .......... .......... 439
TTGGGAACTA AACAAGGCCC AAGCTGCAAA TCCCTAATCA CTCGTCATTC TCATAAATAA 34924
.......... .......... .......... .......... .......... .......... 439
AGCTGAAAAA ACTAAATCCA AGTGGGGCAC GCACTTGGAC TTTGGCCTCT TGGACTTGAG 34984
.......... .......... .......... .......... .......... .......... 439
TGGGCGACAC GCCGGATC-G GCACCGGCAC CTAGGGCTTG TTTAGTTCCA AAAAATTTTG 35043
|| || | ||| | ||| ||| | || |||| |||||||||| ||| ||||||
........AC GCTGAATCAG GCA-CGG--- C-GGGCCTTG TTTAGTTCCA AAATATTTTG 486
GGAAATGGAC ATTGTAGCAC TTTCGTTTGT ATTTGACAAA TATTGTCCAA TTATGGACTA 35103
|||| ||| | |||||| | |||||||||| |||||||||| ||||||| || | || |||||
CAAAATCGAC ACTGTAGCTC TTTCGTTTGT ATTTGACAAA TATTGTCTAA TCATAGACTA 546
ACTAGGCTC 35112
|||||| ||
ACTAGGTTC 555
********************************************************************************
EST sequence 318 -strand (File: SPtuc02-10-22.3104-)
1 TTTTATTTTT GTCTATTTTA TGCTCCTGCA TGCGACCAAA GATTCGATGT GACGGAAAAT
61 CTTGAAAATT TTTGCGAACT AAACAAGGCT TCATTTCTAA TTTCCTCAAA AAAAGAAGAA
121 GACATTTCTT ATCGATCCAC CATGGAGAGA GTACATGAAT GGTGGGGGTA GCACGACAAC
181 CAACAAGGTA GCTAACTAGC CTTTCTGCTA ATATATTTAC GGCTTCTTTA TAAGAAGAAA
241 CAGCCTCTGA TCCAGCTGAA AGCTAGCAGC ACAGGAAGGA TCACCCCTAA GTATCATCAA
301 GAGGCCACCA AAAGATGCAT AAATCTCCAC TTTAGTAGAT GAATTGCCAT TACTGTCTTT
361 GGTACTGTCT TCTGAGATCT TGTAAAGCTT TCCATGCATG ATGTAGTCAT AATCGTCAGC
421 AAGAGTTTTT CTTCCAGCCT GTGTGTAGTA GCCAGCGTCT GTTGATCCAT CCAGGTTGAG
481 AGTGAGAGCT AAAACCATGT TGAATGTGTC ACCAAGCTTC ATTGCATAGA CCTCAGTAGC
541 AACATCCAGT TGCATGTACA TTTCATTCTC GCTTGTAGCT TCAATACGAG TGACTTTGTC
601 GAACTTCTTG CCATCAGGAT CGAGCCTGGT CACCTTAAAT TTATCTTTGA AGAGGTGCTC
661 GGCCATTTTT CCTGGCGGGT GCTCGTCGCC GGCGCCGATC TGGCGAAGGG TGTCAGCGCT
721 CGCCCAGTCG TCGTCGCAGC AACAGCAAGG CCTTGTTTAG TTCCAAAAAA TTTTGCAAAA
781 TAGGAATAGT ACCATTTTCG TTTGTATTGG ACAAATATTA TTCAATTATG TATTAACTAG
841 ACTCAAAAGA TTCGTCTCGT CAATTTCGAC CAAACGGTGT AATTAGTTTT TATTTTCGTC
901 CATATTTAAT ACTTCATGCA TGCGTCTAAA AATTTGATGT GATAGAGAAT ATGAAAAATT
961 TTGCAAAAAT TTTTGACAAC TAAACAAGGC CCAAGCAAAG AAAGGCGCGC GCGAGAGAGT
1021 CGCGCCGGAG AAAGAAGTGG GGCCCACGCG GACTAGTCAG GGATGTGCTT TTCTTTGCTT
1081 TATATATATA ATATCCTCTG TTTCTTTGGA CCCGACGCGT CTCTTGAATC GTCCATTGGT
1141 GGGCTCTATA ACAGGCCCAA GCAGGCCTCG TGC
Predicted gene structure (within gDNA segment 34706 to 38639):
Exon 1 35004 35262 ( 259 n); cDNA 736 994 ( 259 n); score: 0.857
MATCH 21326110+ SPtuc02-10-22.3104- 0.857 259 0.221 C
PGS_21326110+_SPtuc02-10-22.3104- (35004 35262)
Alignment (genomic DNA sequence = upper lines):
GCACCGGCAC CTAGGGCTTG TTTAGTTCCA AAAAATTTTG GGAAATGGAC ATTGTAGCAC 35063
||| | || | ||| |||| |||||||||| |||||||||| |||| | || ||| ||
GCAGCAACAG CAAGGCCTTG TTTAGTTCCA AAAAATTTTG CAAAATAGGA ATAGTACCAT 795
TTTCGTTTGT ATTTGACAAA TATTGTCCAA TTATGGACTA ACTAGGCTCA AAAGATTCAT 35123
|||||||||| ||| |||||| |||| | ||| ||||| | || ||||| |||| |||||||| |
TTTCGTTTGT ATTGGACAAA TATTATTCAA TTATGTATTA ACTAGACTCA AAAGATTCGT 855
CTCGTCAATT CCGACCAAAC TGTGTAATTA GTTTTTATTT TCGTCTATAT TTAACACTCC 35183
|||||||||| ||||||||| ||||||||| |||||||||| ||||| |||| |||| ||| |
CTCGTCAATT TCGACCAAAC GGTGTAATTA GTTTTTATTT TCGTCCATAT TTAATACTTC 915
ATGCATGCGT CTAAAGATTC GATGTGACGG AGAATATGAA AAATTTTACA AAATTTTTTC 35243
|||||||||| ||||| ||| ||||||| | |||||||||| ||||||| || ||| |||||
ATGCATGCGT CTAAAAATTT GATGTGATAG AGAATATGAA AAATTTTGCA AAAATTTTTG 975
GGAAGTAAAC AAGGCCCTA 35262
|| ||||| ||||||| |
ACAACTAAAC AAGGCCCAA 994
********************************************************************************
EST sequence 275 -strand (File: 20549943-)
1 AGATTAAAAA AATAATTACA TAATTTACTT ATAATTTACG AGACGAATCA TAATTAAACA
61 ATAATTGTCA TATACAAATG AAAGTGCTAC TGTAGCTCAA AAAGTTTTCG CAAAGCATTC
121 TCTGATAAGG CCAGGGTAGG GCCAAAACCT AAGGCATGTC TGCTCAAGGT GCTGCTTCTG
181 TTGTAGCATT GATCTTGATC AAGTTCATAT TCTCTCAGCA GCAACAACCG TACAGGTACA
241 AATATCTGAG TCGGTAGGTC TGGTGAATGA TAACATGGGA GACCTTCACT TTGTTACTCG
301 AACGTATCAA GCACAGCATC TGAATCCAGC ATATACAGCA ACAGTACAAG TAGCAGTATA
361 CCTAAAGCTA ATTCTCTCTA TAGATAGCTT ACAGCCTCAA GTTAGTGGTA GAGTACAGTA
421 TAAGTGTATA ACCCAGGTGC ACCAACCAAA AAATAAGGTG CATGGCAGCT AGGCCTTGTT
481 TAGTTCCANA AAAATTTTGC AAAATAAACA CTGTAGCACT TTCGTTTGTA TTTGACAAAT
541 ATCGTTC
Predicted gene structure (within gDNA segment 31987 to 35411):
Exon 1 32574 32588 ( 15 n); cDNA 405 419 ( 15 n); score: 0.667
Intron 1 32589 33924 (1336 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0)
Exon 2 33925 33939 ( 15 n); cDNA 420 432 ( 13 n); score: 0.667
Intron 2 33940 34201 ( 262 n); Pd: 0.000 (s: 0), Pa: 0.085 (s: 0)
Exon 3 34202 34234 ( 33 n); cDNA 433 462 ( 30 n); score: 0.636
Intron 3 34235 35007 ( 773 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80)
Exon 4 35008 35091 ( 84 n); cDNA 463 547 ( 85 n); score: 0.857
MATCH 21326110+ 20549943- 0.857 147 0.269 C
PGS_21326110+_20549943- (32574 32588,33925 33939,34202 34234,35008 35091)
Alignment (genomic DNA sequence = upper lines):
GTGCTACGAG GACA-TGCCT CTACAAGATT CACAAGCGAC GCAAGAGCAG CAGACGATAC 32632
||| || ||| ||| |
GTGG