GeneSeqer. Version of February 10, 2003.
Date run: Thu Feb 20 10:58:27 2003
(Bayesian) Splice site model (species): Arabidopsis thaliana
Fast search parameters: MinMatchLen 12, MinQuality 30.
________________________________________________________________________________
Sequence 1: 21326110, from 7500 to 22500, both strands analyzed.
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MCest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MTest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 6
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MTest2; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 4 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MPest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/BVSVest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GHcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/BVSVcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ZMest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ZMest2; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LHcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ASest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest2; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 9
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest3; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest4; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 7
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest5; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ATest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 5
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ATest2; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 5
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MScdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MSest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GAest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 11
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LJcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LEcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/OSest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/OSest2; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 1 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SCcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LPest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LEest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 4 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LEest2; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/OScdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MPcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SBest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 39
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 5
... matches indexed, elapsed seconds = 5 HitsTableSize = 13
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVest2; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 4 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVest3; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVest4; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/STcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ATcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 13
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SCest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SPest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 11
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ZMcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTPTest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MCcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTPTcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMest2; matching gDNA +strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 5
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMest3; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 4 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMest4; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LHest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SBcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GHest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MTcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LPcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/STest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 12
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GAcdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LJest1; matching gDNA +strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/AScdna1; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MCest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MTest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MTest2; matching gDNA -strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MPest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/BVSVest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GHcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/BVSVcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ZMest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 11
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ZMest2; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 28
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LHcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ASest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 4 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest2; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 5
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest3; matching gDNA -strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 22
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest4; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAest5; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ATest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ATest2; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MScdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MSest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GAest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 8
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LJcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LEcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/OSest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 9
EST library file: /PlantGDB/DATA/GeneSeqer/Index/OSest2; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 4
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SCcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LPest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LEest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 4
... matches indexed, elapsed seconds = 4 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LEest2; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/OScdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MPcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SBest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 16
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 4
... matches indexed, elapsed seconds = 4 HitsTableSize = 9
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVest2; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVest3; matching gDNA -strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/HVest4; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/STcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ATcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 10
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SCest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SPest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 3
EST library file: /PlantGDB/DATA/GeneSeqer/Index/ZMcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTPTest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MCcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/PTPTcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 2 HitsTableSize = 6
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMest2; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 2 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMest3; matching gDNA -strand ...
... found all matches, elapsed seconds = 2
... matches indexed, elapsed seconds = 3 HitsTableSize = 2
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GMest4; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LHest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/SBcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GHest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/TAcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/MTcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LPcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/STest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 3
... matches indexed, elapsed seconds = 3 HitsTableSize = 5
EST library file: /PlantGDB/DATA/GeneSeqer/Index/GAcdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
EST library file: /PlantGDB/DATA/GeneSeqer/Index/LJest1; matching gDNA -strand ...
... found all matches, elapsed seconds = 1
... matches indexed, elapsed seconds = 1 HitsTableSize = 1
EST library file: /PlantGDB/DATA/GeneSeqer/Index/AScdna1; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 0
********************************************************************************
EST sequence 7 +strand (File: 13557989+)
1 CCAACCACAC TCGCAGCCAG CCTGCCCGCT CGCCCGCCCG CCATTCTTGC CGATTCGAGT
61 CGACGTCACG CCTCCGGCGC CCCCTTCGGT TGTCACCTCG GGGGTCGCGG ATTGGTGGAG
121 GGGAGGATTT GAGCGGCGCG GCCATGGATA CAACATCTAG GGCCGCCATA GTATCCCGTC
181 GCTCCACCAG ACGGAGATCA ACTGGGATAA CCTCGACAAG ACCAAGCTCT ACGTGGTGGG
241 CGCAGGCATG TTCAGCGGGG TCACCGCGGC GCTGTACCCT GTCTCGGTGG TCAAGACCCG
301 GATGCAGGTT GCCTCTGGGG ACGCCATGGG GAGGAACGCA CTGGCTACCT TCAAGAACAT
361 CCTTAAGGTG GACGGCGTGC CAGGGCTGTA CCGGGGGTTT CCTACTGTTA TCATTGGGGC
421 TGTACCAACT AGGATCATCT TCCTCACGGC GCTTGAGACA ACCAAAGCAG CCTCTCTCAA
481 GCTTGTTGAG CCCTTCAAGC TGTCAGAGCC GGTGCAGGCT GCCTTTGCCA ATGGCCTTGC
541 CGGTCTGTCG GCATCTACAT GTTCGCAGGC TA
Predicted gene structure (within gDNA segment 7500 to 9005):
Exon 1 7879 8058 ( 180 n); cDNA 29 210 ( 182 n); score: 0.928
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.90), Pa: 0.581 (s: 0.98)
Exon 2 8339 8700 ( 362 n); cDNA 211 572 ( 362 n); score: 0.956
MATCH 21326110+ 13557989+ 0.946 542 0.948 C
PGS_21326110+_13557989+ (7879 8058,8339 8700)
Alignment (genomic DNA sequence = upper lines):
CCCGCCCGCC CGCCATTCTT GCCGAATCGA GTCCACGCCA CGCCTCCTGC GCCCCCTTCG 7938
| |||||||| |||||||||| ||||| |||| ||| ||| || ||||||| || ||||||||||
CTCGCCCGCC CGCCATTCTT GCCGATTCGA GTCGACGTCA CGCCTCCGGC GCCCCCTTCG 88
GTTCTCACCT CGGGAGTCGC GGATTGGTGG AGGGGAGGAT TTGAGCGGCG CGGCCATGGA 7998
||| |||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTGTCACCT CGGGGGTCGC GGATTGGTGG AGGGGAGGAT TTGAGCGGCG CGGCCATGGA 148
TACAACCTCT AGGGCCGCCA -AG-ATCCCG TCGCTCCACC AGACGGAGAT CAACTGGGAC 8056
|||||| ||| |||||||||| || |||||| |||||||||| |||||||||| |||||||||
TACAACATCT AGGGCCGCCA TAGTATCCCG TCGCTCCACC AGACGGAGAT CAACTGGGAT 208
AAGTAAGCAA CCCACCGGTC TTGTAATCCT TAGGTTCCCA TTTCGTGCCG ATTTCCGCCT 8116
||
AA........ .......... .......... .......... .......... .......... 210
TTCTCGCGGT CCTAGTCTTC TAGAAATTTA GCTCCGATCG TTGAACTGTG TCCCCCGCCC 8176
.......... .......... .......... .......... .......... .......... 210
TATTCCGGAT TGGCTTTACC GCCTTAGGAT TAGGAACTGT TGTTTGAGGA TTTGACATGG 8236
.......... .......... .......... .......... .......... .......... 210
CTGTTCATGC TCCTGGACGA AGCGCAATTT GGGGATTCGT AGCTTATTCC GTTGTTTCCG 8296
.......... .......... .......... .......... .......... .......... 210
ATTCTTTTAC TGTTCTCAAA TCGTGGCGCT GAAATGTTGC AGCCTCGACA AGACCAAGCT 8356
|||||||| ||||||||||
.......... .......... .......... .......... ..CCTCGACA AGACCAAGCT 228
CTACGTGGTG GGCGCAGGCA TGTTCAGCGG CGTCACCGTG GCGCTGTATC CTGTCTCGGT 8416
|||||||||| |||||||||| |||||||||| ||||||| | |||||||| | ||||||||||
CTACGTGGTG GGCGCAGGCA TGTTCAGCGG GGTCACCGCG GCGCTGTACC CTGTCTCGGT 288
GGTCAAGACC CGGATGCAGG TTGCCTCTGG GGACGCCATG AGGAGGAACG CGCTGGCTAC 8476
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | ||||||||
GGTCAAGACC CGGATGCAGG TTGCCTCTGG GGACGCCATG GGGAGGAACG CACTGGCTAC 348
CTTCAAGAAC ATCCTCAAGA TGGACGGCGT GCCAGGGCTG TACCGGGGGT TTGCTACCGT 8536
|||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| || |||| ||
CTTCAAGAAC ATCCTTAAGG TGGACGGCGT GCCAGGGCTG TACCGGGGGT TTCCTACTGT 408
TATCATTGGG GCTGTACCAA CTAGGATCAT CTTCCTCACA GCGCTTGAGA CAACCAAAGC 8596
|||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||||||||
TATCATTGGG GCTGTACCAA CTAGGATCAT CTTCCTCACG GCGCTTGAGA CAACCAAAGC 468
AGCCTCGCTT AAGCTTGTTG AGCCCTTCAA GCTGTCAGAG CCGGTGCGGG CTGCCTTTGC 8656
|||||| || |||||||||| |||||||||| |||||||||| ||||||| || ||||||||||
AGCCTCTCTC AAGCTTGTTG AGCCCTTCAA GCTGTCAGAG CCGGTGCAGG CTGCCTTTGC 528
CAATGGCCTT GCTGGTCTGT CAGCGTCTAC ATGTTCGCAG GCTA 8700
|||||||||| || ||||||| | || ||||| |||||||||| ||||
CAATGGCCTT GCCGGTCTGT CGGCATCTAC ATGTTCGCAG GCTA 572
********************************************************************************
EST sequence 5 +strand (File: 6626513+)
1 GCACGAGGTT GTTGTGGACA AAAAGAGCAC AAAAGTGGGT AGGGCAAGCC AACCACACTC
61 GCAGCCAGCC TGCCTGCTCG CCCGCCCGCC ATTCTTGCCG ATTCGAGTCG ACGTCACGCC
121 TCCGGCGCCC CCTTCGGTTG TCACCTCGGG GGTCGCGGAT TGGTGGAGTG GAGGATTTGA
181 GCGGCGCGGC CATGGATACA ACCTCTAGGG CCGCCAAGAT CCCGTCGCTC CACCAGACGG
241 AGATCAACTG GGATAACCTC GACAAGACCA AGCTCTACGT GGTGGGCGCA GGCATGTTCA
301 GCGGGGTCAC CGTGGCGCTG TACCCTGTAT CGGTGGTCAA GACCCGGATG CAGGTTGCCT
361 CTGGGGATGC CATGGGGAGG AACGCGCTGG CTACCTTCAA GAACATCCTT AAGGTGGACG
421 GCGTGCCAGG GCTGTACCGG GGGTTTCCTA CTGTTATAAT TGGGGCTGTA CCAACTAGGA
481 TTATCTTCCT CACGGNGCTT GAGACAACCA AAGCAGCCTC TCTCAAGCTT
Predicted gene structure (within gDNA segment 7500 to 8957):
Exon 1 7879 8058 ( 180 n); cDNA 77 256 ( 180 n); score: 0.950
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.98), Pa: 0.581 (s: 0.98)
Exon 2 8339 8612 ( 274 n); cDNA 257 530 ( 274 n); score: 0.945
MATCH 21326110+ 6626513+ 0.947 454 0.857 C
PGS_21326110+_6626513+ (7879 8058,8339 8612)
Alignment (genomic DNA sequence = upper lines):
CCCGCCCGCC CGCCATTCTT GCCGAATCGA GTCCACGCCA CGCCTCCTGC GCCCCCTTCG 7938
| |||||||| |||||||||| ||||| |||| ||| ||| || ||||||| || ||||||||||
CTCGCCCGCC CGCCATTCTT GCCGATTCGA GTCGACGTCA CGCCTCCGGC GCCCCCTTCG 136
GTTCTCACCT CGGGAGTCGC GGATTGGTGG AGGGGAGGAT TTGAGCGGCG CGGCCATGGA 7998
||| |||||| |||| ||||| |||||||||| || ||||||| |||||||||| ||||||||||
GTTGTCACCT CGGGGGTCGC GGATTGGTGG AGTGGAGGAT TTGAGCGGCG CGGCCATGGA 196
TACAACCTCT AGGGCCGCCA AGATCCCGTC GCTCCACCAG ACGGAGATCA ACTGGGACAA 8058
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ||
TACAACCTCT AGGGCCGCCA AGATCCCGTC GCTCCACCAG ACGGAGATCA ACTGGGATAA 256
GTAAGCAACC CACCGGTCTT GTAATCCTTA GGTTCCCATT TCGTGCCGAT TTCCGCCTTT 8118
.......... .......... .......... .......... .......... .......... 256
CTCGCGGTCC TAGTCTTCTA GAAATTTAGC TCCGATCGTT GAACTGTGTC CCCCGCCCTA 8178
.......... .......... .......... .......... .......... .......... 256
TTCCGGATTG GCTTTACCGC CTTAGGATTA GGAACTGTTG TTTGAGGATT TGACATGGCT 8238
.......... .......... .......... .......... .......... .......... 256
GTTCATGCTC CTGGACGAAG CGCAATTTGG GGATTCGTAG CTTATTCCGT TGTTTCCGAT 8298
.......... .......... .......... .......... .......... .......... 256
TCTTTTACTG TTCTCAAATC GTGGCGCTGA AATGTTGCAG CCTCGACAAG ACCAAGCTCT 8358
|||||||||| ||||||||||
.......... .......... .......... .......... CCTCGACAAG ACCAAGCTCT 276
ACGTGGTGGG CGCAGGCATG TTCAGCGGCG TCACCGTGGC GCTGTATCCT GTCTCGGTGG 8418
|||||||||| |||||||||| |||||||| | |||||||||| |||||| ||| || |||||||
ACGTGGTGGG CGCAGGCATG TTCAGCGGGG TCACCGTGGC GCTGTACCCT GTATCGGTGG 336
TCAAGACCCG GATGCAGGTT GCCTCTGGGG ACGCCATGAG GAGGAACGCG CTGGCTACCT 8478
|||||||||| |||||||||| |||||||||| | |||||| | |||||||||| ||||||||||
TCAAGACCCG GATGCAGGTT GCCTCTGGGG ATGCCATGGG GAGGAACGCG CTGGCTACCT 396
TCAAGAACAT CCTCAAGATG GACGGCGTGC CAGGGCTGTA CCGGGGGTTT GCTACCGTTA 8538
|||||||||| ||| ||| || |||||||||| |||||||||| |||||||||| |||| ||||
TCAAGAACAT CCTTAAGGTG GACGGCGTGC CAGGGCTGTA CCGGGGGTTT CCTACTGTTA 456
TCATTGGGGC TGTACCAACT AGGATCATCT TCCTCACAGC GCTTGAGACA ACCAAAGCAG 8598
| |||||||| |||||||||| ||||| |||| ||||||| | |||||||||| ||||||||||
TAATTGGGGC TGTACCAACT AGGATTATCT TCCTCACGGN GCTTGAGACA ACCAAAGCAG 516
CCTCGCTTAA GCTT 8612
|||| || || ||||
CCTCTCTCAA GCTT 530
********************************************************************************
EST sequence 64 +strand (File: 14528354+)
1 ATTCGGCACG AGGGCCAGAG GAGGCGAGGA ACACATGGTC TCTTTCCTCC CCGCTGAAGA
61 GTAGCTGCCA AGACCACCAC GGAAGCGGAG GCGCACCACC CAGGCGGGCC ATTCTCGCCG
121 AGCCCCTCCC CCTCCCCCGG CCGCCGCGCC CTCGCCTCCG GGGATCGCGG GATTGGGCGG
181 CCATGGACAC CTCTACTAGG GCGGCCAAGA TCCCCTCCCT CCCCCAACAG ACGGAGATCA
241 ACTGGGACAA CCTCGACATG ACCAAGCTCT ATGTGGTTGG GGCCGGCATG TTCAGCTGCG
301 TGACCGTGGC GCTCTACCCG GTCTCTGTGA TCAAGACCCG GATGCAGGTT GCCTCCGGGG
361 AGGCCATGAG GAGGAACGCC CTGGCCACCT TTAAGAACAT CCTCAAGGTG GATGGGGTGC
421 CTGGGCTCTA CCGAGGGTTT GGGACCGTCA TCACTGGGGC TATCCCGGCT AGGATTATCT
481 TCCTCACGGC GCTCGAGAAG ACAAAGGCGA CTTCGCTCAA GCTTGTCGAG CCTCTTCAGC
541 TGTCAGAGTC GATGGAGGCT GCCCTTGCTA ATGGCCTTGG TGGTTTGACG GCGTCTCTGT
601 GTTCGCAGGC CGTGTTTGTG CCCATTGATG TGGTTAGTCA GAAATTGATG GTTCAAGGAT
661 ATTCTGGTCA TGTTAGATAT AAGGGTGGAA TCGATGT
Predicted gene structure (within gDNA segment 7500 to 9334):
Exon 1 7984 8058 ( 75 n); cDNA 173 250 ( 78 n); score: 0.760
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.79), Pa: 0.581 (s: 0.88)
Exon 2 8339 8720 ( 382 n); cDNA 251 632 ( 382 n); score: 0.832
Intron 2 8721 8848 ( 128 n); Pd: 0.857 (s: 0.78), Pa: 0.962 (s: 0.88)
Exon 3 8849 8913 ( 65 n); cDNA 633 697 ( 65 n); score: 0.862
MATCH 21326110+ 14528354+ 0.826 522 0.749 C
PGS_21326110+_14528354+ (7984 8058,8339 8720,8849 8913)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGTCGCT-- -CCACCAGAC 8040
| |||||| ||||| || | ||||||| ||||||||| || || || ||| |||||
TTGGGCGGCC ATGGACACCT CTACTAGGGC GGCCAAGATC CCCTCCCTCC CCCAACAGAC 232
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
|||||||||| ||||||||
GGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 250
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 250
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 250
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 250
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 252
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| ||||| || | | |||||||| |||| |||| ||||||||||
TCGACATGAC CAAGCTCTAT GTGGTTGGGG CCGGCATGTT CAGCTGCGTG ACCGTGGCGC 312
TGTATCCTGT CTCGGTGGTC AAGACCCGGA TGCAGGTTGC CTCTGGGGAC GCCATGAGGA 8460
| || || || ||| ||| || |||||||||| |||||||||| ||| ||||| ||||||||||
TCTACCCGGT CTCTGTGATC AAGACCCGGA TGCAGGTTGC CTCCGGGGAG GCCATGAGGA 372
GGAACGCGCT GGCTACCTTC AAGAACATCC TCAAGATGGA CGGCGTGCCA GGGCTGTACC 8520
||||||| || ||| ||||| |||||||||| ||||| |||| || ||||| ||||| ||||
GGAACGCCCT GGCCACCTTT AAGAACATCC TCAAGGTGGA TGGGGTGCCT GGGCTCTACC 432
GGGGGTTTGC TACCGTTATC ATTGGGGCTG TACCAACTAG GATCATCTTC CTCACAGCGC 8580
| ||||||| ||||| ||| | ||||||| | || |||| ||| |||||| ||||| ||||
GAGGGTTTGG GACCGTCATC ACTGGGGCTA TCCCGGCTAG GATTATCTTC CTCACGGCGC 492
TTGAGACAAC CAAAGCAGCC TCGCTTAAGC TTGTTGAGCC -CTTCAAGCT GTCAGAGCCG 8639
| |||| || || || | ||||| |||| |||| ||||| |||| |||| ||||||| ||
TCGAGAAGAC AAAGGCGACT TCGCTCAAGC TTGTCGAGCC TCTTC-AGCT GTCAGAGTCG 551
GTGCGGGCTG CCTTTGCCAA TGGCCTTGCT GGTCTGTCAG CGTCTACATG TTCGCAGGCT 8699
|| ||||| || |||| || |||||||| | ||| || | | ||||| || |||||||||
ATGGAGGCTG CCCTTGCTAA TGGCCTTGGT GGTTTGACGG CGTCTCTGTG TTCGCAGGCC 611
ATTTTTGTTC CAATTGATGT GGTATGCCTC TCATGTGCCT TCTATGTGAT GTTGTATAGA 8759
| ||||| | | |||||||| |
GTGTTTGTGC CCATTGATGT G......... .......... .......... .......... 632
GAAAAAATAT CTTACAATAT GTTGATGTTA AATGCTAATT ACAATACTAG ACTACTGTTT 8819
.......... .......... .......... .......... .......... .......... 632
TCATTCTGTT GTGCATTGGA ATGTTTCAGA TTAGCCAGAA ATTGATGGTT CAAGGATATT 8879
|||| ||||| |||||||||| ||||||||||
.......... .......... .........G TTAGTCAGAA ATTGATGGTT CAAGGATATT 663
CTGGTAATGC CAGATACAAA GGTGGATTAG ATGT 8913
||||| ||| ||||| || |||||| | | ||||
CTGGTCATGT TAGATATAAG GGTGGAATCG ATGT 697
********************************************************************************
EST sequence 18 +strand (File: 25548034+)
1 GCACGAGGCA GCCGGACCAT TCTCGCCGAG CCCTCGCCCT CCCCCGGCCG CGGCGGCGGC
61 GCCCCTCCTC CGCGCCCTCG CCTCCGGGGA TCGCGGGATT GGGCGGCGAT GGACACCTCT
121 ACTAGGGCGG CCAAGATCCC CTCCCTCCCC CAACAGACGG AGATCAACTG GGACAACCTC
181 GACATGACCA AGCTCTATGT GGTGGGGGCC GGCATGTTCA GCTGCGTGAC CGTGGCGCTC
241 TACCCGGTGT CCGTGATCAA GACCCGGATG CAGGTTGCCT CCGGGGAGGC CTTGAGGAGG
301 AACGCCCTGG CCACCTTCAA GAACATCCTC AAGGTGGATG GGGTGCCTGG GCTCTACCGA
361 GGGTTTGGGA CCGTCATCAC CGGGGCTATC CCGGCTAGGA TTATCTTCCT CACGGCGCTC
421 GAGAAGACAA AGGCGACTTC GCTCAAGCTT GTTGAGCCAC TTCAGCTGTC AGAGTCGATG
481 GAGGCTGCCC TTGCTAATGG CCTCGGTGGT TTGACGGCGT CTCTGTGCTC GCAGGCTGTC
541 TTTGTGCCCA TTGATGTGGT TAGCCAGNNN TTGATGGTTC AAGGATATTC TGGTCATGTC
601 AGATA
Predicted gene structure (within gDNA segment 7500 to 9244):
Exon 1 7984 8058 ( 75 n); cDNA 100 176 ( 77 n); score: 0.760
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.79), Pa: 0.581 (s: 0.90)
Exon 2 8339 8720 ( 382 n); cDNA 177 558 ( 382 n); score: 0.830
Intron 2 8721 8848 ( 128 n); Pd: 0.857 (s: 0.78), Pa: 0.962 (s: 0.87)
Exon 3 8849 8895 ( 47 n); cDNA 559 605 ( 47 n); score: 0.872
MATCH 21326110+ 25548034+ 0.818 504 0.833 C
PGS_21326110+_25548034+ (7984 8058,8339 8720,8849 8895)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGTCGCT-- -CCACCAGAC 8040
|| ||||| ||||| || | ||||||| ||||||||| || || || ||| |||||
TGG-GCGGCG ATGGACACCT CTACTAGGGC GGCCAAGATC CCCTCCCTCC CCCAACAGAC 158
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
|||||||||| ||||||||
GGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 176
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 176
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 176
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 176
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 178
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| |||||||| | | |||||||| |||| |||| ||||||||||
TCGACATGAC CAAGCTCTAT GTGGTGGGGG CCGGCATGTT CAGCTGCGTG ACCGTGGCGC 238
TGTATCCTGT CTCGGTGGTC AAGACCCGGA TGCAGGTTGC CTCTGGGGAC GCCATGAGGA 8460
| || || || || ||| || |||||||||| |||||||||| ||| ||||| ||| ||||||
TCTACCCGGT GTCCGTGATC AAGACCCGGA TGCAGGTTGC CTCCGGGGAG GCCTTGAGGA 298
GGAACGCGCT GGCTACCTTC AAGAACATCC TCAAGATGGA CGGCGTGCCA GGGCTGTACC 8520
||||||| || ||| |||||| |||||||||| ||||| |||| || ||||| ||||| ||||
GGAACGCCCT GGCCACCTTC AAGAACATCC TCAAGGTGGA TGGGGTGCCT GGGCTCTACC 358
GGGGGTTTGC TACCGTTATC ATTGGGGCTG TACCAACTAG GATCATCTTC CTCACAGCGC 8580
| ||||||| ||||| ||| | |||||| | || |||| ||| |||||| ||||| ||||
GAGGGTTTGG GACCGTCATC ACCGGGGCTA TCCCGGCTAG GATTATCTTC CTCACGGCGC 418
TTGAGACAAC CAAAGCAGCC TCGCTTAAGC TTGTTGAGCC -CTTCAAGCT GTCAGAGCCG 8639
| |||| || || || | ||||| |||| |||||||||| |||| |||| ||||||| ||
TCGAGAAGAC AAAGGCGACT TCGCTCAAGC TTGTTGAGCC ACTTC-AGCT GTCAGAGTCG 477
GTGCGGGCTG CCTTTGCCAA TGGCCTTGCT GGTCTGTCAG CGTCTACATG TTCGCAGGCT 8699
|| ||||| || |||| || |||||| | | ||| || | | ||||| || |||||||||
ATGGAGGCTG CCCTTGCTAA TGGCCTCGGT GGTTTGACGG CGTCTCTGTG CTCGCAGGCT 537
ATTTTTGTTC CAATTGATGT GGTATGCCTC TCATGTGCCT TCTATGTGAT GTTGTATAGA 8759
| ||||| | | |||||||| |
GTCTTTGTGC CCATTGATGT G......... .......... .......... .......... 558
GAAAAAATAT CTTACAATAT GTTGATGTTA AATGCTAATT ACAATACTAG ACTACTGTTT 8819
.......... .......... .......... .......... .......... .......... 558
TCATTCTGTT GTGCATTGGA ATGTTTCAGA TTAGCCAGAA ATTGATGGTT CAAGGATATT 8879
|||||||| ||||||||| ||||||||||
.......... .......... .........G TTAGCCAGNN NTTGATGGTT CAAGGATATT 589
CTGGTAATGC CAGATA 8895
||||| ||| ||||||
CTGGTCATGT CAGATA 605
********************************************************************************
EST sequence 9 +strand (File: 11549557+)
1 CATTCTCGCC GTACCCTCGC CCTCCCCCGG CCGCGGCGGC GGCGCCCCTC CTCCGCGCCC
61 TCGCCTCCGG GGATCGCGGG ATTGGGCGGC GATGGACACC TCTACTAGGG CGGCCAAGAT
121 CCCCTCCCTC CCCCAACAGA CGGAGATCAA CTGGGACAAC CTCTACATGA CCAAGCTCTA
181 TGTGGTGGGG GCCGGCATGT TCAGCTGCGT GACCGTGGCG CTCTACCCGG TGTCCGTGAT
241 CAAGACCCGG ATGCAGGTTG CCTCCGGGGA GGCCTTGAGG AGGAACGCCC TGGCCACCTT
301 CAAGAACATC CTCAAGGTGG ATGGGGTGCC TGGGCTCTAC CGAGGGTTTG GGACCGTCAT
361 CACCGGGGCT ATGCCGGCTA GGATTATCTT CCTCACGGCG CTCGAGAAGA CAAAGGCGAC
421 TTCGCTCAAG CTTGTTGAGC CACTTCAGCT GTCA
Predicted gene structure (within gDNA segment 7500 to 8990):
Exon 1 7984 8058 ( 75 n); cDNA 83 159 ( 77 n); score: 0.760
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.79), Pa: 0.581 (s: 0.88)
Exon 2 8339 8633 ( 295 n); cDNA 160 454 ( 295 n); score: 0.837
MATCH 21326110+ 11549557+ 0.822 370 0.815 C
PGS_21326110+_11549557+ (7984 8058,8339 8633)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGTCGCT-- -CCACCAGAC 8040
|| ||||| ||||| || | ||||||| ||||||||| || || || ||| |||||
TGG-GCGGCG ATGGACACCT CTACTAGGGC GGCCAAGATC CCCTCCCTCC CCCAACAGAC 141
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
|||||||||| ||||||||
GGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 159
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 159
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 159
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 159
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 161
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|| ||| ||| ||||||||| |||||||| | | |||||||| |||| |||| ||||||||||
TCTACATGAC CAAGCTCTAT GTGGTGGGGG CCGGCATGTT CAGCTGCGTG ACCGTGGCGC 221
TGTATCCTGT CTCGGTGGTC AAGACCCGGA TGCAGGTTGC CTCTGGGGAC GCCATGAGGA 8460
| || || || || ||| || |||||||||| |||||||||| ||| ||||| ||| ||||||
TCTACCCGGT GTCCGTGATC AAGACCCGGA TGCAGGTTGC CTCCGGGGAG GCCTTGAGGA 281
GGAACGCGCT GGCTACCTTC AAGAACATCC TCAAGATGGA CGGCGTGCCA GGGCTGTACC 8520
||||||| || ||| |||||| |||||||||| ||||| |||| || ||||| ||||| ||||
GGAACGCCCT GGCCACCTTC AAGAACATCC TCAAGGTGGA TGGGGTGCCT GGGCTCTACC 341
GGGGGTTTGC TACCGTTATC ATTGGGGCTG TACCAACTAG GATCATCTTC CTCACAGCGC 8580
| ||||||| ||||| ||| | |||||| | || |||| ||| |||||| ||||| ||||
GAGGGTTTGG GACCGTCATC ACCGGGGCTA TGCCGGCTAG GATTATCTTC CTCACGGCGC 401
TTGAGACAAC CAAAGCAGCC TCGCTTAAGC TTGTTGAGCC CTTCAAGCTG TCA 8633
| |||| || || || | ||||| |||| |||||||||| | ||||| |||
TCGAGAAGAC AAAGGCGACT TCGCTCAAGC TTGTTGAGCC ACTTCAGCTG TCA 454
********************************************************************************
EST sequence 11 +strand (File: 11116044+)
1 GGCCACGGAA GCGGAAGCGC AGGCCAGCGC ACCCCCAGCC GGACCATTCT CGCCGAGCCC
61 TCGCCCTCCC CCGGCCGCGG CGGCGGCGCC CCTCCTCCGC GCCCTCGCCT CCGGGGATCG
121 CGGGATTGGG CGGCGATGGA CACCTCTACT AGGGCGGCCA AGATCCCCTC CCTCCCCCAA
181 CAGACGGAGA TCAACTGGGA CAACCTCGAC ATGACCAAGC TCTATGTGGT GGGGGCCGGC
241 ATGTTCAGCT GCGTGACCGT GGCGCTCTAC CCGGTGTCCG TGATCAAGAC CCGGATGCAG
301 GTTGCCTCCG GGGAGGCCTT GAGGAGGAAC GCCCTGGCCA CCTTCAAGAA CATCCTCAAG
361 GTGGATGGGG TGCCTGGGCT CTACCGAGGG TTTGGGACCG TCATCACCGG GGCTATCCCG
421 GCTAGGATTA TCTTCCTCAC GGCGCTCGAG AAGACAAAGG CGACTTCGCT CAAGC
Predicted gene structure (within gDNA segment 7500 to 9375):
Exon 1 7984 8058 ( 75 n); cDNA 127 203 ( 77 n); score: 0.760
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.79), Pa: 0.581 (s: 0.90)
Exon 2 8339 8610 ( 272 n); cDNA 204 475 ( 272 n); score: 0.842
MATCH 21326110+ 11116044+ 0.824 347 0.731 C
PGS_21326110+_11116044+ (7984 8058,8339 8610)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGTCGCT-- -CCACCAGAC 8040
|| ||||| ||||| || | ||||||| ||||||||| || || || ||| |||||
TGG-GCGGCG ATGGACACCT CTACTAGGGC GGCCAAGATC CCCTCCCTCC CCCAACAGAC 185
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
|||||||||| ||||||||
GGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 203
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 203
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 203
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 203
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 205
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| |||||||| | | |||||||| |||| |||| ||||||||||
TCGACATGAC CAAGCTCTAT GTGGTGGGGG CCGGCATGTT CAGCTGCGTG ACCGTGGCGC 265
TGTATCCTGT CTCGGTGGTC AAGACCCGGA TGCAGGTTGC CTCTGGGGAC GCCATGAGGA 8460
| || || || || ||| || |||||||||| |||||||||| ||| ||||| ||| ||||||
TCTACCCGGT GTCCGTGATC AAGACCCGGA TGCAGGTTGC CTCCGGGGAG GCCTTGAGGA 325
GGAACGCGCT GGCTACCTTC AAGAACATCC TCAAGATGGA CGGCGTGCCA GGGCTGTACC 8520
||||||| || ||| |||||| |||||||||| ||||| |||| || ||||| ||||| ||||
GGAACGCCCT GGCCACCTTC AAGAACATCC TCAAGGTGGA TGGGGTGCCT GGGCTCTACC 385
GGGGGTTTGC TACCGTTATC ATTGGGGCTG TACCAACTAG GATCATCTTC CTCACAGCGC 8580
| ||||||| ||||| ||| | |||||| | || |||| ||| |||||| ||||| ||||
GAGGGTTTGG GACCGTCATC ACCGGGGCTA TCCCGGCTAG GATTATCTTC CTCACGGCGC 445
TTGAGACAAC CAAAGCAGCC TCGCTTAAGC 8610
| |||| || || || | ||||| ||||
TCGAGAAGAC AAAGGCGACT TCGCTCAAGC 475
********************************************************************************
EST sequence 75 +strand (File: 21975880+)
1 CACATGCTCT CTTTCCTCCC CGCTGGAGAG TAGCTGCCAA GACCACCACG GAAGCGGAGG
61 CGCACCACCC AGGCGGGCCA TTCTCGCCGA GCCCCTCCCC CTCCCCCGGG CCGNCGCGCC
121 CTCGCCTCCG GGGATCGCGG GATTGGGCGG CCATGGACAC CTCTACTAGG GCGGCCAAGA
181 TCCCCTCCCT CCCCCAACAG ACGGAGATCA ACTGGGACAA CCTCGACATG ACCAAGCTCT
241 ATGTGGTTGG GGCCGGCATG TTCAGCTGCG TGACCGTGGC GCTCTACCCG GTCTCTGTGA
301 TCAAGACCCG GATGCAGGTT GCCTCCGGGG AGGCCATGAG GAGGAACGCC CTGGCCACCT
361 TTAAAAACAT CCTCAAAGTG GATGGGGTGC CTGGGCTCTA CCGAGGGTTT GGGACCGTTA
421 TCACTGGGGC TATCCCGGCT AGGATTA
Predicted gene structure (within gDNA segment 7500 to 9262):
Exon 1 7984 8058 ( 75 n); cDNA 144 220 ( 77 n); score: 0.773
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.79), Pa: 0.581 (s: 0.88)
Exon 2 8339 8565 ( 227 n); cDNA 221 447 ( 227 n); score: 0.855
MATCH 21326110+ 21975880+ 0.834 302 0.676 C
PGS_21326110+_21975880+ (7984 8058,8339 8565)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGTCGCT-- -CCACCAGAC 8040
|| |||||| ||||| || | ||||||| ||||||||| || || || ||| |||||
TGG-GCGGCC ATGGACACCT CTACTAGGGC GGCCAAGATC CCCTCCCTCC CCCAACAGAC 202
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
|||||||||| ||||||||
GGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 220
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 220
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 220
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 220
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 222
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| ||||| || | | |||||||| |||| |||| ||||||||||
TCGACATGAC CAAGCTCTAT GTGGTTGGGG CCGGCATGTT CAGCTGCGTG ACCGTGGCGC 282
TGTATCCTGT CTCGGTGGTC AAGACCCGGA TGCAGGTTGC CTCTGGGGAC GCCATGAGGA 8460
| || || || ||| ||| || |||||||||| |||||||||| ||| ||||| ||||||||||
TCTACCCGGT CTCTGTGATC AAGACCCGGA TGCAGGTTGC CTCCGGGGAG GCCATGAGGA 342
GGAACGCGCT GGCTACCTTC AAGAACATCC TCAAGATGGA CGGCGTGCCA GGGCTGTACC 8520
||||||| || ||| ||||| || ||||||| |||| |||| || ||||| ||||| ||||
GGAACGCCCT GGCCACCTTT AAAAACATCC TCAAAGTGGA TGGGGTGCCT GGGCTCTACC 402
GGGGGTTTGC TACCGTTATC ATTGGGGCTG TACCAACTAG GATCA 8565
| ||||||| ||||||||| | ||||||| | || |||| ||| |
GAGGGTTTGG GACCGTTATC ACTGGGGCTA TCCCGGCTAG GATTA 447
********************************************************************************
EST sequence 77 +strand (File: 21973454+)
1 GGAACACATG CTCTCTTTCC TCCCCGCTGG AGAGTAGCTG CCAAGACCAC CACGGAAGCG
61 GAGGCGCACC ACCCAGGCGG GCCATTCTCG CCGAGCCCCT CCCCCTCCCC CGGCCGCCGC
121 GCCCTCGCCT CCGGGGATCG CGGGATTGGG CGGCCATGGA CACCTCTACT AGGGCGGCCA
181 AGATCCCCTC CCTCCCCCAA CAGACGGAGA TCAACTGGGA CAACCTCGAC ATGACCAAGC
241 TCTATGTGGT TGGGGCCGGC ATGTTCAGCT GCGTGACCGT GGCGCTCTAC CCGGTCTCTG
301 TGATCAAGAC CCGGATGCAG GTTGCCTCCG GGGAGGCCAT GAGGAGGAAC GCCCTGGCCA
361 CCTTTAAGAA CATCCTCAAA GTGGATGGGG TGCCTGGGCT CTACCGAGGG TTTGGGACCG
421 TCATCACTGG GGCTATCCC
Predicted gene structure (within gDNA segment 7500 to 9099):
Exon 1 7984 8058 ( 75 n); cDNA 147 223 ( 77 n); score: 0.773
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.79), Pa: 0.581 (s: 0.88)
Exon 2 8339 8554 ( 216 n); cDNA 224 439 ( 216 n); score: 0.861
MATCH 21326110+ 21973454+ 0.838 291 0.663 C
PGS_21326110+_21973454+ (7984 8058,8339 8554)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGTCGCT-- -CCACCAGAC 8040
|| |||||| ||||| || | ||||||| ||||||||| || || || ||| |||||
TGG-GCGGCC ATGGACACCT CTACTAGGGC GGCCAAGATC CCCTCCCTCC CCCAACAGAC 205
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
|||||||||| ||||||||
GGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 223
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 223
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 223
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 223
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 225
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| ||||| || | | |||||||| |||| |||| ||||||||||
TCGACATGAC CAAGCTCTAT GTGGTTGGGG CCGGCATGTT CAGCTGCGTG ACCGTGGCGC 285
TGTATCCTGT CTCGGTGGTC AAGACCCGGA TGCAGGTTGC CTCTGGGGAC GCCATGAGGA 8460
| || || || ||| ||| || |||||||||| |||||||||| ||| ||||| ||||||||||
TCTACCCGGT CTCTGTGATC AAGACCCGGA TGCAGGTTGC CTCCGGGGAG GCCATGAGGA 345
GGAACGCGCT GGCTACCTTC AAGAACATCC TCAAGATGGA CGGCGTGCCA GGGCTGTACC 8520
||||||| || ||| ||||| |||||||||| |||| |||| || ||||| ||||| ||||
GGAACGCCCT GGCCACCTTT AAGAACATCC TCAAAGTGGA TGGGGTGCCT GGGCTCTACC 405
GGGGGTTTGC TACCGTTATC ATTGGGGCTG TACC 8554
| ||||||| ||||| ||| | ||||||| | ||
GAGGGTTTGG GACCGTCATC ACTGGGGCTA TCCC 439
********************************************************************************
EST sequence 63 +strand (File: 16314143+)
1 CAAGACCACC ACGGAAGCGG AGGCGCACCA CCCAGGCGGG CCATTCTCGC CGAGGGCCTC
61 CCCCTCCCCC TCCCCCGGCC GCCGCGCCCT CGCCTCCGGG GATCGCGGGA TTGGGCGGCC
121 ATGGACACCT CTACTAGGGC GGCCAACATC CCCTCCCTGC CCCAACAGAC CGAGATCAAC
181 TGGGACAACC TCGACATGAC CAAGCTCTAT GTGGTTGGGG CCGGCATGTT CAGCTGCGTG
241 ACCGAGGCGC TCTACCCGGG CTCTTGGAAC AAAGACCCGG GTGCAGGTTG CCTCGGGGGA
301 GGCCCTAAGA AGGAACCCCA TGGCCACGAT TTAGAACAAT CCCAAACGTG CATGGGGGCC
361 GAGAGATTTA ACACGGGGTT GGGAGCCCGG CTTGACTGGG GCATTCCCGG CCGGGAAGAT
421 ATTGGGGGAA GAGGGCTTTT GAGACTGGGG CGAATTTGGT GGATCCTGTT CAACCCTTTT
481 AAAAAATAGT GGGGCGTAGG AGGGCGGCAC TTGAGAAAAA ACCCTTGGGA GTTTGCCGGG
541 CGTCGTCGAT TTCGAAAGAG AGGCATCGGG CACCGGGCAC CG
Predicted gene structure (within gDNA segment 7500 to 10188):
Exon 1 7984 8058 ( 75 n); cDNA 112 188 ( 77 n); score: 0.747
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.74), Pa: 0.581 (s: 0.88)
Exon 2 8339 8534 ( 196 n); cDNA 189 386 ( 198 n); score: 0.719
MATCH 21326110+ 16314143+ 0.727 271 0.466 C
PGS_21326110+_16314143+ (7984 8058,8339 8534)
Alignment (genomic DNA sequence = upper lines):
CGGCGCGGCC ATGGATACAA CCTCTAGGGC CGCCAAGATC CCGT--C-GC TCCACCAGAC 8040
|| |||||| ||||| || | ||||||| ||||| ||| || | | || ||| |||||
TGG-GCGGCC ATGGACACCT CTACTAGGGC GGCCAACATC CCCTCCCTGC CCCAACAGAC 170
GGAGATCAAC TGGGACAAGT AAGCAACCCA CCGGTCTTGT AATCCTTAGG TTCCCATTTC 8100
||||||||| ||||||||
CGAGATCAAC TGGGACAA.. .......... .......... .......... .......... 188
GTGCCGATTT CCGCCTTTCT CGCGGTCCTA GTCTTCTAGA AATTTAGCTC CGATCGTTGA 8160
.......... .......... .......... .......... .......... .......... 188
ACTGTGTCCC CCGCCCTATT CCGGATTGGC TTTACCGCCT TAGGATTAGG AACTGTTGTT 8220
.......... .......... .......... .......... .......... .......... 188
TGAGGATTTG ACATGGCTGT TCATGCTCCT GGACGAAGCG CAATTTGGGG ATTCGTAGCT 8280
.......... .......... .......... .......... .......... .......... 188
TATTCCGTTG TTTCCGATTC TTTTACTGTT CTCAAATCGT GGCGCTGAAA TGTTGCAGCC 8340
||
.......... .......... .......... .......... .......... ........CC 190
TCGACAAGAC CAAGCTCTAC GTGGTGGGCG CAGGCATGTT CAGCGGCGTC ACCGTGGCGC 8400
|||||| ||| ||||||||| ||||| || | | |||||||| |||| |||| |||| |||||
TCGACATGAC CAAGCTCTAT GTGGTTGGGG CCGGCATGTT CAGCTGCGTG ACCGAGGCGC 250
TGTATCCTGT CTCGGTGGTC -AAGACCCGG ATGCAGGTTG CCTCTGGGGA CGCCATGAGG 8459
| || || | ||| | | ||||||||| ||||||||| |||| ||||| ||| | ||
TCTACCCGGG CTCTTGGAAC AAAGACCCGG GTGCAGGTTG CCTCGGGGGA GGCCCTAAGA 310
AGGAACGCGC TGGCTACCTT CAAGAAC-AT CCTCAAGATG GACGGCGTGC CAGGGCTGTA 8518
|||||| | |||| || | ||||| || || || || | || | | || | | ||
AGGAACCCCA TGGCCACGAT TTAGAACAAT CCCAAACGTG CATGGGGGCC GAGAGATTTA 370
CCGGGGGTTT GCTACC 8534
| ||| || | | |
ACACGGGGTT GGGAGC 386
********************************************************************************
EST sequence 66 +strand (File: 13082841+)
1 CGGAAGCGGA GGCACACCAC CCATGCGGGC CATTCTCGTC GAGCCCATAC CCCTCCTCCT
61 CCCCCGGACG CCGCGCCCTC ACCTCCGGGG ATCTCGGGAT TGAGCGGCCA TGGACACCTC
121 TACTAGGGCG GCCAAGATCC TCTCCCTTCC CCAACAGACG GAGATCAACT GGGACAACCT
181 CGACATGACC AAGCTCTATG TGGTTGGGGC CGGCATGTTC AGCTGCATGA CCGTGGCACT
241 CTACCCGGTC TCTGTGATCA ACACCCGGAT GCATGTTGTC TCGGGGGAGG CCATGAGGAG
301 GAACGCCCTC GCCACCTGTT AAGAACATCC TCAAAGTGGA TGGTGTGCCT GTGCTCTACC
361 GAAGGTTTGG GACCGTCATA ACTGAGGCTA TCCCGGCTAG GATTAATATT CCTTACGGAG
421 CTCGATAAGA CAAAGGCGAC TTCCGTTCAA ACTTTGTCGA GCCTTTTCAC CTGTCAAAAT
481 CATTGGAGGC TGCCCTTGCT AATGGCG
Predicted gene structure (within gDNA segment 7500 to 9664):
Exon 1 7988 8058 ( 71 n); cDNA 104 177 ( 74 n); score: 0.775
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0.77), Pa: 0.581 (s: 0.86)
Exon 2 8339 8664 ( 326 n); cDNA 178 507 ( 330 n); score: 0.748
MATCH 21326110+ 13082841+ 0.753 397 0.783 C
PGS_21326110+_13082841+ (7988 8058,8339 8664)
Alignment (genomic DNA sequence = upper lines):
GCGGCCATGG ATACAACCTC TAGGGCCGCC AAGATCCCGT CGC-T--CCA CCAGACGGAG 8044
|||||||||| | || | | |||||| ||| ||||||| | | | | ||| |||||||||
GCGGCCATGG ACACCTCTAC TAGGGCGGCC AAGATCCTCT CCCTTCCCCA ACAGACGGAG 163
ATCAACTGGG ACAAGTAAGC AACCCACCGG TCTTGTAATC CTTAGGTTCC CATTTCGTGC 8104
|||||||||| ||||
ATCAACTGGG ACAA...... .......... .......... .......... .......... 177
CGATTTCCGC CTTTCTCGCG GTCCTAGTCT TCTAGAAATT TAGCTCCGAT CGTTGAACTG 8164
.......... .......... .......... .......... .......... .......... 177
TGTCCCCCGC CCTATTCCGG ATTGGCTTTA CCGCCTTAGG ATTAGGAACT GTTGTTTGAG 8224
.......... .......... .......... .......... .......... .......... 177
GATTTGACAT GGCTGTTCAT GCTCCTGGAC GAAGCGCAAT TTGGGGATTC GTAGCTTATT 8284
.......... .......... .......... .......... .......... .......... 177
CCGTTGTTTC CGATTCTTTT ACTGTTCTCA AATCGTGGCG CTGAAATGTT GCAGCCTCGA 8344
||||||
.......... .......... .......... .......... .......... ....CCTCGA 183
CAAGACCAAG CTCTACGTGG TGGGCGCAGG CATGTTCAGC GGCGTCACCG TGGCGCTGTA 8404
|| ||||||| ||||| |||| | || || || |||||||||| || | |||| |||| || ||
CATGACCAAG CTCTATGTGG TTGGGGCCGG CATGTTCAGC TGCATGACCG TGGCACTCTA 243
TCCTGTCTCG GTGGTCAAGA CCCGGATGCA GGTTGCCTCT GGGGACGCCA TGAGGAGGAA 8464
|| ||||| ||| |||| | |||||||||| |||| ||| ||||| |||| ||||||||||
CCCGGTCTCT GTGATCAACA CCCGGATGCA TGTTGTCTCG GGGGAGGCCA TGAGGAGGAA 303
CGCGCTGGCT ACCT-TCAAG AACATCCTCA AGATGGACGG CGTGCCAGGG CTGTACCGGG 8523
||| || || |||| | ||| |||||||||| | |||| || ||||| | | || |||||
CGCCCTCGCC ACCTGTTAAG AACATCCTCA AAGTGGATGG TGTGCCTGTG CTCTACCGAA 363
GGTTTGCTAC CGTTATCATT GGGGCTGTAC CAACTAGGA- TCATCTTCCT CACAGCGCTT 8582
|||||| || ||| || | | | |||| | | | |||||| | || ||||| || | |||
GGTTTGGGAC CGTCATAACT GAGGCTATCC CGGCTAGGAT TAATATTCCT TACGGAGCTC 423
GAGACAACCA AAGCAGCCT- CGCTTAAGC- TTGTTGAGCC CTTCAAGCTG TCAGAGCCGG 8640
|| | || | | || | | || | || | |||| ||||| || | ||| ||| | |
GATAAGACAA AGGCGACTTC CGTTCAAACT TTGTCGAGCC TTTTCACCTG TCAAAATCAT 483
TGCGGGCTGC CTTTGCCAAT GGCC 8664
|| |||||| | |||| ||| |||
TGGAGGCTGC CCTTGCTAAT GGCG 507
********************************************************************************
EST sequence 29 +strand (File: 13778583+)
1 GATTATATTG ACCATTTGGT CGGTGCTTTT CCTCCAGAAA CTTCTCCGAT TACTCTCCAT
61 TTGCAAAATT TAACGACTTG CTTATAAGCC GAGTTAGGGT TTTGAACAGT TGTAATTTTT
121 TTTAATGGAG GTTGCTGGAT CTACAAGGAA GCCATTTCAA CAAACCGAGA TTAACTGGGA
181 CAAGCTTGAT AAGACTAGGT TCTATGTCGT AGGAGCTGGG ATATTTACAG GGCTTACTGT
241 TGCACTATAC CCCATTTCTG TCATCAAGAC TAGAATGCAG GTGGCAACCA ATAATGCTGC
301 AAAAGAGAGT GCATTTTCTG TTGTCAGGGG CCTAGTGCGA AATGATGGTA TTCCCGGTTT
361 ATATAGAGGA TTTGGAACTG TCATTACAGG GAGCGGTTCC TGCCAGAATT ATATTTCTCA
421 CAGCACTAGA GACCACTAAG GTGACTGCAT TTAAGATGGT GGAACCATTC AAGCTATCAG
481 AACCTGTACA GGCAGCTATA GCAAATGGTG TTGCTGGCAT GCTGGCGTCT CTTTGTTCAC
541 AATCCGTCTT TGTTCCAATT GACATAGTTA GTCAAAGGTT AATGGTGCAA GGATACTCAG
601 GACATGCAAG CTACAATGGA GGGCTTGGAT GTTGCTCGCA AAGTTCTGAA GTCAGAAGGT
661 ATACGTGGAC TATATAGAGG ATTCAGTCTG TCTGTTCTAC ATACTCCCCA TCCAGTGCTG
721 TATGGTGGGC AAGTTATGGT TCGAGCCAGC GCTTCTATGG AGCAAGCTCT TGGATAATGG
781 AC
Predicted gene structure (within gDNA segment 7500 to 9529):
Exon 1 7500 7509 ( 10 n); cDNA 154 163 ( 10 n); score: 0.900
Intron 1 7510 8038 ( 529 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0)
Exon 2 8039 8058 ( 20 n); cDNA 164 183 ( 20 n); score: 0.900
Intron 2 8059 8338 ( 280 n); Pd: 0.338 (s: 0), Pa: 0.581 (s: 0.64)
Exon 3 8339 8720 ( 382 n); cDNA 184 566 ( 383 n); score: 0.615
Intron 3 8721 8848 ( 128 n); Pd: 0.857 (s: 0.66), Pa: 0.962 (s: 0.74)
Exon 4 8849 9045 ( 197 n); cDNA 567 762 ( 196 n); score: 0.751
MATCH 21326110+ 13778583+ 0.661 609 0.779 C
PGS_21326110+_13778583+ (7500 7509,8039 8058,8339 8720,8849 9045)
Alignment (genomic DNA sequence = upper lines):
ATTTTAACAA AAATGATAAC CTGCAATGTT ATTTATGAGT TCGCAGATAA ATCTGCTTGC 7559
|||| |||||
ATTTCAACAA .......... .......... .......... .......... .......... 163
ATTGCTACGC TGAACTGCGC AAGGAAGGAA AGAGTTCAAC GACCACGTGG TCAAATGGGC 7619
.......... .......... .......... .......... .......... .......... 163
CATTTGCCGT AAAGCAAAGC AAACGGGCTT GGCAACCGAG CCCAACTGTT AGAGCGCGTA 7679
.......... .......... .......... .......... .......... .......... 163
CTACTCTCTC ATTCTGCCTT TGGGCCCAAG AAAGAGGCGT CCCCATCCCT GACGGCTGAC 7739
.......... .......... .......... .......... .......... .......... 163
GCCGTCGACG CGGCGACGCC CTCCAACAAA ACGGAAGAGG CGAGGAGCAC ATGCCCTGTC 7799
.......... .......... .......... .......... .......... .......... 163
CGCCATTCTC GCTGAGTTGT TGTGGACAAA AACAGCACGA AAGTGGGGAG GGAAAACGGG 7859
.......... .......... .......... .......... .......... .......... 163
GGGAAGCCAA CCACAGCAGC CCGCCCGCCC GCCATTCTTG CCGAATCGAG TCCACGCCAC 7919
.......... .......... .......... .......... .......... .......... 163
GCCTCCTGCG CCCCCTTCGG TTCTCACCTC GGGAGTCGCG GATTGGTGGA GGGGAGGATT 7979
.......... .......... .......... .......... .......... .......... 163
TGAGCGGCGC GGCCATGGAT ACAACCTCTA GGGCCGCCAA GATCCCGTCG CTCCACCAGA 8039
|
.......... .......... .......... .......... .......... .........A 164
CGGAGATCAA CTGGGACAAG TAAGCAACCC ACCGGTCTTG TAATCCTTAG GTTCCCATTT 8099
| ||||| || |||||||||
CCGAGATTAA CTGGGACAA. .......... .......... .......... .......... 183
CGTGCCGATT TCCGCCTTTC TCGCGGTCCT AGTCTTCTAG AAATTTAGCT CCGATCGTTG 8159
.......... .......... .......... .......... .......... .......... 183
AACTGTGTCC CCCGCCCTAT TCCGGATTGG CTTTACCGCC TTAGGATTAG GAACTGTTGT 8219
.......... .......... .......... .......... .......... .......... 183
TTGAGGATTT GACATGGCTG TTCATGCTCC TGGACGAAGC GCAATTTGGG GATTCGTAGC 8279
.......... .......... .......... .......... .......... .......... 183
TTATTCCGTT GTTTCCGATT CTTTTACTGT TCTCAAATCG TGGCGCTGAA ATGTTGCAGC 8339
.......... .......... .......... .......... .......... .........G 184
CTCGACAAGA CCAAGCTCTA CGTGGTGGGC GCAGGCATGT TCAGCGGCGT CACCGTGGCG 8399
|| || |||| | | | |||| || || || || || || | | | || | || || ||
CTTGATAAGA CTAGGTTCTA TGTCGTAGGA GCTGGGATAT TTACAGGGCT TACTGTTGCA 244
CTGTATCCTG TCTCGGTGGT CAAGACCCGG ATGCAGGTTG CCTCTGGGGA CGCCATGAGG 8459
|| || || | || || | |||||| | |||||||| | | | | || |
CTATACCCCA TTTCTGTCAT CAAGACTAGA ATGCAGGTGG CAACCAATAA TGCTGCAAAA 304
AGGAACGCGC TGGCTACCTT CAAGAACATC CT-CAAGATG GACGGCGTGC CAGGGCTGTA 8518
|| || | || | || | | | | | | || || || | | | || | ||
GAGAGTGCAT TTTCTGTTGT CAGGGGCCTA GTGCGAAAT- GATGGTATTC CCGGTTTATA 363
CCGGGGGTTT GCTACCGTTA TCATTGGG-G CTGTACCAAC TAGGATCATC TTCCTCACAG 8577
| || ||| | || || | | | ||| | | || || | || || || || |||||||
TAGAGGATTT GGAACTGTCA TTACAGGGAG CGGTTCCTGC CAGAATTATA TTTCTCACAG 423
CGCTTGAGAC AACCAAAGCA GCCTCGCTTA AGCTTGTTGA GCCCTTCAAG CTGTCAGAGC 8637
| || ||||| || || | | | ||| || | || || || |||||| || ||||| |
CACTAGAGAC CACTAAGGTG ACTGCATTTA AGATGGTGGA ACCATTCAAG CTATCAGAAC 483
CGGTGCGGGC TGCCTTTGCC AATGGCCTTG CTGGTCTGTC AGCGTCTACA TGTTCGCAGG 8697
| || | ||| || | || ||||| ||| |||| || |||||| ||||| ||
CTGTACAGGC AGCTATAGCA AATGGTGTTG CTGGCATGCT GGCGTCTCTT TGTTCACAAT 543
CTATTTTTGT TCCAATTGAT GTGGTATGCC TCTCATGTGC CTTCTATGTG ATGTTGTATA 8757
| | ||||| ||||||||| |
CCGTCTTTGT TCCAATTGAC ATA....... .......... .......... .......... 566
GAGAAAAAAT ATCTTACAAT ATGTTGATGT TAAATGCTAA TTACAATACT AGACTACTGT 8817
.......... .......... .......... .......... .......... .......... 566
TTTCATTCTG TTGTGCATTG GAATGTTTCA GATTAGCCAG AAATTGATGG TTCAAGGATA 8877
|||| || | || |||| | ||||||||
.......... .......... .......... .GTTAGTCAA AGGTTAATGG TGCAAGGATA 595
TTCTGGTAAT GCCAGATACA AAGG-TGGAT TAGATGTTGC TCGAAAGGTC ATAAAGGCTG 8936
|| || || || || |||| | || || | | |||||||| ||| || || | ||| | |
CTCAGGACAT GCAAGCTACA ATGGAGGGCT TGGATGTTGC TCGCAAAGTT CTGAAGTCAG 655
ATGGCATTAG GGGGCTGTAC AGAGGATTTG GACTGTCTGT TATGACCTAT GCTCCATCCA 8996
| || || | || || || |||||||| | |||||||| | | || || | |||||||
AAGGTATACG TGGACTATAT AGAGGATTCA GTCTGTCTGT TCT-ACATAC TCCCCATCCA 714
GTGCTGTGTG GTGGGCAAGT TATGGTTCCA GCCAGCGCAT AATTTGGAG 9045
||||||| || |||||||||| |||||||| | |||||||| | | |||||
GTGCTGTATG GTGGGCAAGT TATGGTTCGA GCCAGCGC-T TCTATGGAG 762
********************************************************************************
EST sequence 4 +strand (File: 11908994+)
1 CAAGGGTTTA ATAGTAATAG TAATAGTAAT TCTTCATCTT CTTCTTCTTC TTGAACACGC
61 AAATTCAATT CATAAACTCT TCAATTTCCT GCAAAATCTC AACACACGCT TCTTCAATGG
121 CTGCTCCCGA AATCAACTGG GACAGGTTAG ATAAAATAAA ATACTATGTA GTGGGAGCTG
181 GACTCTTTTC GGGTGTTACT GTGGCACTCT ACCCTGTCTC TGTTGTGAAG ACTAGGATGC
241 AGGTTGCTTC AAACCATACT GCAGAGAGAA GTGCATTGTC TGTTGTGAAA GGATTACTCA
301 AGACAGATGG CATTCGTGGT TTGTATAAAG GGTTTGGCAT TGCCGTCACC GGAGCAATTC
361 CTGCCAGAAT CATATTTCTC ACTGCCTTGG AGACCACAAA GGCGGCTTCC TTCAAGATGC
421 TTGAACCATT TAAACTATCT GAAACTACAC AGGCTGCCAT AGCAAATGGC ATTGGTGGCA
481 TGACATCGTC GATCTGTGCA CAAGCTGTGT TTGTTCCAAT TGACGTGATT AGCCAAAAGT
541 TGATGGTGCA AGGGTACTCA GGCCATGCCC AGTATAGTGG GGGCTTGGAT GTTGCTCCGT
601 AAGTTGATAA AGGGGCTGAG GGAATTCCGG GGGTTAT
Predicted gene structure (within gDNA segment 7500 to 9591):
Exon 1 8045 8058 ( 14 n); cDNA 132 145 ( 14 n); score: 0.929
Intron 1 8059 8338 ( 280 n); Pd: 0.338 (s: 0), Pa: 0.581 (s: 0.56)
Exon 2 8339 8720 ( 382 n); cDNA 146 527 ( 382 n); score: 0.631
Intron 2 8721 8848 ( 128 n); Pd: 0.857 (s: 0.74), Pa: 0.962 (s: 0.74)
Exon 3 8849 8952 ( 104 n); cDNA 528 634 ( 107 n); score: 0.702
MATCH 21326110+ 11908994+ 0.646 500 0.785 C
PGS_21326110+_11908994+ (8045 8058,8339 8720,8849 8952)
Alignment (genomic DNA sequence = upper lines):
ATCAACTGGG ACAAGTAAGC AACCCACCGG TCTTGTAATC CTTAGGTTCC CATTTCGTGC 8104
|||||||||| |||
ATCAACTGGG ACAG...... .......... .......... .......... .......... 145
CGATTTCCGC CTTTCTCGCG GTCCTAGTCT TCTAGAAATT TAGCTCCGAT CGTTGAACTG 8164
.......... .......... .......... .......... .......... .......... 145
TGTCCCCCGC CCTATTCCGG ATTGGCTTTA CCGCCTTAGG ATTAGGAACT GTTGTTTGAG 8224
.......... .......... .......... .......... .......... .......... 145
GATTTGACAT GGCTGTTCAT GCTCCTGGAC GAAGCGCAAT TTGGGGATTC GTAGCTTATT 8284
.......... .......... .......... .......... .......... .......... 145
CCGTTGTTTC CGATTCTTTT ACTGTTCTCA AATCGTGGCG CTGAAATGTT GCAGCCTCGA 8344
| ||
.......... .......... .......... .......... .......... ....GTTAGA 151
CAAGACCAAG CTCTACGTGG TGGGCGCAGG CATGTTCAGC GGCGTCACCG TGGCGCTGTA 8404
|| | || ||| || | |||| || || | || || || || | |||| || ||
TAAAATAAAA TACTATGTAG TGGGAGCTGG ACTCTTTTCG GGTGTTACTG TGGCACTCTA 211
TCCTGTCTCG GTGGTCAAGA CCCGGATGCA GGTTGCCTCT GGGGACGCCA TGAGGAGGAA 8464
|||||||| || || |||| | ||||||| |||||| || | | ||| |
CCCTGTCTCT GTTGTGAAGA CTAGGATGCA GGTTGCTTCA AACCATACTG CAGAGAGAAG 271
CGCGCTGGCT ACCTTCAAGA ACATCCTCAA GATGGACGGC GTGCCAGGGC TGTACCGGGG 8524
|| || || | || | ||||| || || ||| | | || |||| ||
TGCATTGTCT GTTGTGAAAG GATTACTCAA GACAGATGGC ATTCGTGGTT TGTATAAAGG 331
GTTTGCTACC GTTATCATTG GGGCTGTACC AACTAGGATC ATCTTCCTCA CAGCGCTTGA 8584
||||| | | ||| | | || | || | || ||| || || |||| | || | ||
GTTTGGCATT GCCGTCACCG GAGCAATTCC TGCCAGAATC ATATTTCTCA CTGCCTTGGA 391
GACAACCAAA GCAGCCTCGC TTAAGCTTGT TGAGCCCTTC AAGCTGTCAG AGCCGGTGCG 8644
||| || || || || || | ||| | | ||| || || || || || | | | |
GACCACAAAG GCGGCTTCCT TCAAGATGCT TGAACCATTT AAACTATCTG AAACTACACA 451
GGCTGCCTTT GCCAATGGCC TTGCTGGTCT GTCAGCGTCT ACATGTTCGC AGGCTATTTT 8704
||||||| | || |||||| ||| ||| | | || |||| | ||| | | | ||| | ||
GGCTGCCATA GCAAATGGCA TTGGTGGCAT GACATCGTCG ATCTGTGCAC AAGCTGTGTT 511
TGTTCCAATT GATGTGGTAT GCCTCTCATG TGCCTTCTAT GTGATGTTGT ATAGAGAAAA 8764
|||||||||| || |||
TGTTCCAATT GACGTG.... .......... .......... .......... .......... 527
AATATCTTAC AATATGTTGA TGTTAAATGC TAATTACAAT ACTAGACTAC TGTTTTCATT 8824
.......... .......... .......... .......... .......... .......... 527
CTGTTGTGCA TTGGAATGTT TCAGATTAGC CAGAAATTGA TGGTTCAAGG ATATTCTGGT 8884
|||||| || || |||| |||| ||||| || || ||
.......... .......... ....ATTAGC CAAAAGTTGA TGGTGCAAGG GTACTCAGGC 563
AATGCCAGAT ACAAAGGTGG ATTAGATGTT GCT-CGAAAG GTCATAAA-- GGCTGATGGC 8941
||||| | | | || || || |||||| ||| || ||| | ||||| |||||| ||
CATGCCCAGT ATAGTGGGGG CTTGGATGTT GCTCCGTAAG TTGATAAAGG GGCTGAGGGA 623
ATTAGGGGGC T 8952
||| |||| |
ATTCCGGGGG T 634
********************************************************************************
EST sequence 71 +strand (File: 16312083+)
1 GAGGAACGCC CTGGCCACCT TTAAAAACAT CCTCAAGGTG GATGGGGTGC CTGGGCTCTA
61 CCGATGGTTA GGGACCGCCA TCACTGGGGC TATCCCGGCT AGGATTATCT TACTCACGGC
121 GCTCGAGAAG ACAAAGGCGA CTTCACTCAA GCTTGTCGAG CCTATACAGC TGTCACAGTC
181 GATGGAGGCT GCCCTTGCTA ATGGCCTTGC TGGCTCGACG GCGTCTCTGT GTTCACAGGC
241 CGTGTTGGTG CCCATTGATG TGGCTAGTCA GAAATTGATG GTTCAAGGAT ATTCTGGTCA
301 TGTTAGATAT AAGGGTGGAA TCGATGTTGC TCAAAAGATT ATGAAAGCTG ATGGGCCACG
361 GGGATTGTAC ACAGGATTAG GCCTATCTGC TATGACGTAT GCACCATCTA GCGCTGTGTG
421 GTGGGCAAGC TATGGATTCA GCN
Predicted gene structure (within gDNA segment 8059 to 9390):
Exon 1 8459 8720 ( 262 n); cDNA 1 262 ( 262 n); score: 0.767
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.70), Pa: 0.962 (s: 0.86)
Exon 2 8849 9029 ( 181 n); cDNA 263 443 ( 181 n); score: 0.807
MATCH 21326110+ 16312083+ 0.783 443 1.000 C
PGS_21326110+_16312083+ (8459 8720,8849 9029)
Alignment (genomic DNA sequence = upper lines):
GAGGAACGCG CTGGCTACCT TCAAGAACAT CCTCAAGATG GACGGCGTGC CAGGGCTGTA 8518
||||||||| ||||| |||| | || ||||| ||||||| || || || |||| | ||||| ||
GAGGAACGCC CTGGCCACCT TTAAAAACAT CCTCAAGGTG GATGGGGTGC CTGGGCTCTA 60
CCGGGGGTTT GCTACCGTTA TCATTGGGGC TGTACCAACT AGGATCATCT TCCTCACAGC 8578
||| |||| | |||| | ||| |||||| | | || || ||||| |||| | ||||| ||
CCGATGGTTA GGGACCGCCA TCACTGGGGC TATCCCGGCT AGGATTATCT TACTCACGGC 120
GCTTGAGACA ACCAAAGCAG CCTCGCTTAA GCTTGTTGAG CCCTTCAAGC TGTCAGAGCC 8638
||| |||| || || || | || || || |||||| ||| || | ||| ||||| || |
GCTCGAGAAG ACAAAGGCGA CTTCACTCAA GCTTGTCGAG CCTATACAGC TGTCACAGTC 180
GGTGCGGGCT GCCTTTGCCA ATGGCCTTGC TGGTCTGTCA GCGTCTACAT GTTCGCAGGC 8698
| || |||| ||| |||| | |||||||||| ||| | | |||||| | |||| |||||
GATGGAGGCT GCCCTTGCTA ATGGCCTTGC TGGCTCGACG GCGTCTCTGT GTTCACAGGC 240
TATTTTTGTT CCAATTGATG TGGTATGCCT CTCATGTGCC TTCTATGTGA TGTTGTATAG 8758
| || || || ||||||| ||
CGTGTTGGTG CCCATTGATG TG........ .......... .......... .......... 262
AGAAAAAATA TCTTACAATA TGTTGATGTT AAATGCTAAT TACAATACTA GACTACTGTT 8818
.......... .......... .......... .......... .......... .......... 262
TTCATTCTGT TGTGCATTGG AATGTTTCAG ATTAGCCAGA AATTGATGGT TCAAGGATAT 8878
||| |||| |||||||||| ||||||||||
.......... .......... .......... GCTAGTCAGA AATTGATGGT TCAAGGATAT 292
TCTGGTAATG CCAGATACAA AGGTGGATTA GATGTTGCTC GAAAGGTCAT AAAGGCTGAT 8938
|||||| ||| ||||| || |||||| | |||||||||| |||| | || || ||||||
TCTGGTCATG TTAGATATAA GGGTGGAATC GATGTTGCTC AAAAGATTAT GAAAGCTGAT 352
GGCATTAGGG GGCTGTACAG AGGATTTGGA CTGTCTGTTA TGACCTATGC TCCATCCAGT 8998
|| ||| | |||||| |||||| || || |||| || |||| ||||| ||||| ||
GGGCCACGGG GATTGTACAC AGGATTAGGC CTATCTGCTA TGACGTATGC ACCATCTAGC 412
GCTGTGTGGT GGGCAAGTTA TGGTTCCAGC C 9029
|||||||||| ||||||| || ||| | ||||
GCTGTGTGGT GGGCAAGCTA TGGATTCAGC N 443
********************************************************************************
EST sequence 21 +strand (File: 11207020+)
1 GGAATCTTTA CTGGAGTTAC AGTAGCATTA TACCCAGTCT CTGTTGTAAA AACTAGGCTT
61 CAGGTTGCTT CGAAGGACAC TGCAGAGAGA AGTGCTTTTT CTGTTATTAG AGGCATACTG
121 AAAACAGATG GAATCCCTGG TCTCTATCGA GGGTTTGGAA CAGTCATCAC TGGTGCCATT
181 CCTGCCAGGG TGATATTTCT CACTGCTCTG GAAACTACAA AAGTAGCTGC TTTCAGCATG
241 GTTGAACCAT TTAAATTCTC TGAACCTACG CAAGCTGCTA TAGCAAATGG AATTGCTGGA
301 ATGACTGCAT CTCTGTTTGC TCAAGCTGTT TTTGTTCCAA TTGATGTGAT TAGTCAAAAG
361 TTGATGGTCC AAGGATACTC AGGCCATGCA AAGTACAACG GAGGTCTAGA TGTTGCTCGT
421 AAGGTTTTAA AGTCTGATGG AATCCGAGGA TTATACAGAG GATTTGGTTT GGCAGTCATG
481 ACTTACTCTG CATGCAGGGC TGAGTGGGGG GCTAGATATG GATCTAGCCA ACGTGGTATC
541 TGGAGGTTCT TGGGCCAGGC ACAGACCCTA AAGAAGGGGG TCCTAGGCTT CGACATAGGG
601 GCTGGCCAGG CTGGTGGAGA ATAATGGGGG GGCTCGAGGG GCTGCTGGCA CTGCGTGGGG
661 CCCTTTGAGA CTGGCTGCGG GAGGTGGGCC TTATGAAGGA CCTTTACCAG CATATGAGAA
721 AGCTGCGTTG CTTACAATGT ACGTAAGGTT TTCCATTGGG ATGGTTCATT ATCTTATATG
781 ATAATCTTAA GGACCCTCAG GCGGATGATT TAATCCTGGA TCCTTGTACC AGGTCTTACT
841 GTGCGGCCGT CGTTCCTCGA CTATTAGTAC ACTGTTGTAC C
Predicted gene structure (within gDNA segment 7500 to 11342):
Exon 1 8487 8720 ( 234 n); cDNA 115 348 ( 234 n); score: 0.671
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.74), Pa: 0.962 (s: 0.78)
Exon 2 8849 9045 ( 197 n); cDNA 349 545 ( 197 n); score: 0.751
Intron 2 9046 9697 ( 652 n); Pd: 0.980 (s: 0.74), Pa: 0.977 (s: 0.55)
Exon 3 9698 9773 ( 76 n); cDNA 546 621 ( 76 n); score: 0.526
Intron 3 9774 10200 ( 427 n); Pd: 0.000 (s: 0.58), Pa: 0.957 (s: 0)
Exon 4 10201 10207 ( 7 n); cDNA 622 628 ( 7 n); score: 0.714
Intron 4 10208 11329 (1122 n); Pd: 0.753 (s: 0), Pa: 0.992 (s: 0)
Exon 5 11330 11342 ( 13 n); cDNA 629 641 ( 13 n); score: 0.538
MATCH 21326110+ 11207020+ 0.680 527 0.598 C
PGS_21326110+_11207020+ (8487 8720,8849 9045,9698 9773,10201 10207,11330 11342)
Alignment (genomic DNA sequence = upper lines):
ATCCTCAAGA TGGACGGCGT GCCAGGGCTG TACCGGGGGT TTGCTACCGT TATCATTGGG 8546
|| || || | || || | || || || || || |||| ||| || || |||| |||
ATACTGAAAA CAGATGGAAT CCCTGGTCTC TATCGAGGGT TTGGAACAGT CATCACTGGT 174
GCTGTACCAA CTAGGATCAT CTTCCTCACA GCGCTTGAGA CAACCAAAGC AGCCTCGCTT 8606
|| | || | ||| | || || ||||| || || || | | || |||| || || ||
GCCATTCCTG CCAGGGTGAT ATTTCTCACT GCTCTGGAAA CTACAAAAGT AG-CTGCTTT 233
AAGC-TTGTT GAGCCCTTCA AGCTGTCAGA GCCGGTGCGG GCTGCCTTTG CCAATGGCCT 8665
||| | ||| || || || | | | || || || || ||||| | | | ||||| |
CAGCATGGTT GAACCATTTA AATTCTCTGA ACCTACGCAA GCTGCTATAG CAAATGGAAT 293
TGCTGGTCTG TCAGCGTCTA CATGTTCGCA GGCTATTTTT GTTCCAATTG ATGTGGTATG 8725
|||||| || | || ||| | | | || ||| ||||| |||||||||| |||||
TGCTGGAATG ACTGCATCTC TGTTTGCTCA AGCTGTTTTT GTTCCAATTG ATGTG..... 348
CCTCTCATGT GCCTTCTATG TGATGTTGTA TAGAGAAAAA ATATCTTACA ATATGTTGAT 8785
.......... .......... .......... .......... .......... .......... 348
GTTAAATGCT AATTACAATA CTAGACTACT GTTTTCATTC TGTTGTGCAT TGGAATGTTT 8845
.......... .......... .......... .......... .......... .......... 348
CAGATTAGCC AGAAATTGAT GGTTCAAGGA TATTCTGGTA ATGCCAGATA CAAAGGTGGA 8905
||||| | | || ||||| ||| |||||| || || || |||| | || ||| || ||
...ATTAGTC AAAAGTTGAT GGTCCAAGGA TACTCAGGCC ATGCAAAGTA CAACGGAGGT 405
TTAGATGTTG CTCGAAAGGT CATAAAGGCT GATGGCATTA GGGGGCTGTA CAGAGGATTT 8965
||||||||| |||| ||||| ||||| || ||||| || | || | || ||||||||||
CTAGATGTTG CTCGTAAGGT TTTAAAGTCT GATGGAATCC GAGGATTATA CAGAGGATTT 465
GGACTGTCTG TTATGACCTA TGCTCCATCC AGTGCTGTGT GGTGGGCAAG TTATGGTTCC 9025
|| || | | | ||||| || || ||| | || |||| || || |||| || ||||| ||
GGTTTGGCAG TCATGACTTA CTCTGCATGC AGGGCTGAGT GGGGGGCTAG ATATGGATCT 525
AGCCAGCGCA TAATTTGGAG GTTAGCTTAT CTGATTGGTT CATCGTTATG TTCCTCTCAG 9085
||||| || || |||||
AGCCAACGTG GTATCTGGAG .......... .......... .......... .......... 545
CCCTGTGTAC TATGTAATAT TTACGAGAAA AAGACCAGTA ATACATTTCT ACTTAATAGT 9145
.......... .......... .......... .......... .......... .......... 545
TATTTGAATT GGTACTTTCC ATCTGTCCAA AACCTTTTCA AACTTCCCCT CTTGATGCTC 9205
.......... .......... .......... .......... .......... .......... 545
AAACTGCAGC TATAATTGCA ATTTTGTTTT CTGATGCTTG TTCTTCCATG TCAATATGTA 9265
.......... .......... .......... .......... .......... .......... 545
CATATCTTTT TTAGAAAACA AGAATGCATC TCAATGCATG TGCTGTATTG TTTTGATTAG 9325
.......... .......... .......... .......... .......... .......... 545
ATTTATCATA GCGATCAATC ACATTTTCTT TACAGATAAA AATAGTCGGA AGGATAAGTT 9385
.......... .......... .......... .......... .......... .......... 545
GGATAACTGA CCAAAGTGGA AATATGATCT TACATATTTT TATCTCTGGC AGCTTAGAGA 9445
.......... .......... .......... .......... .......... .......... 545
ACTTAATTAC CAACCTGAAA CAATGTGATG AAGTAACTAC ACAAAACCAC ATATAGTTTC 9505
.......... .......... .......... .......... .......... .......... 545
ATGCACTCTG CAAAACTAAA TTGAAACTCT TAGTGTGCTC TTAATGCTGT TAAGAGGGTG 9565
.......... .......... .......... .......... .......... .......... 545
TATGCAAGTT TACTGGAATC AGTACCTTTT GTTAGTTTAT TTCTTTGTGG TTGATGGTTG 9625
.......... .......... .......... .......... .......... .......... 545
AAAGATTATA TTTCTTGTCT TGATAACTTA GCCAAAATAG TTAACTATTG TGCTTTTTAC 9685
.......... .......... .......... .......... .......... .......... 545
ATATTGGAAC AGTGCTCTT- GGCCATTTGC A-TGAC-AAA GAAGAGGCTC CTAGCCAATT 9742
| |||| ||||| | | | ||| |||| || || |||| | |
.......... ..-GTTCTTG GGCCAGGCAC AGACCCTAAA GAAGGGGGTC CTAGGC-TTC 591
GAAACTAGTT GGTGTTCAAG CATCAGGGGG GGTTTTTGCC GGTGCCGTGA CCTCTTTTGT 9802
|| | ||| | || || | | || |
GACA-TAGGG GCTGGCCAGG CTGGTGGAGA A......... .......... .......... 621
TACGACTCCC ATAGATACAA TAAAGACCAG GCTGCAGGTA CTGTGTGACA TTCTGTTTGC 9862
.......... .......... .......... .......... .......... .......... 621
TGATTACTCT TGTAATTTGA TTTGTGTGGG TATATTTTGT GAGGCTTACC CTTGTGACTT 9922
.......... .......... .......... .......... .......... .......... 621
AATGATTCTT GTCTTTACAT TTATGCTGCT CATTTGCAAT AATTTGATTC CTTATCAATG 9982
.......... .......... .......... .......... .......... .......... 621
CAATGCCACT AAGTTTAGGG GAATGGATAT TTTGTTTTGG AAGTATATTT GATGTCAGAC 10042
.......... .......... .......... .......... .......... .......... 621
TTGAAGACCT AAATGTTCTT TTATACTGAT ATTTCCTCCA ATGGCGGGCT ATTGAGGTGC 10102
.......... .......... .......... .......... .......... .......... 621
TGGACTGGAA TGCTGTCTAT ATTAAACAAT ATATACTTCT ATGTTTACAG CTGTTTGTTT 10162
.......... .......... .......... .......... .......... .......... 621
TCTGCTGACA TACCATGACC AATTTGTCAT GGTTTCAGTT ATGAGGTCAG AAAAAAAGAA 10222
| ||| |
.......... .......... .......... ........TA ATGGG..... .......... 628
ACTTCCATTG GGAAAACTTG ATATCTATTA CTTCATTATT TATAGTGAGT AACAAAAGTT 10282
.......... .......... .......... .......... .......... .......... 628
AGCACTTTCA AACTGACTAA AGTATGCCAG GGACGTATCA TGCATTTTAC AACATGCTCC 10342
.......... .......... .......... .......... .......... .......... 628
ACATATCTCC AAATATCACA TATTACGCTT GTAGTGGTAA ACTGATAATA CATCTACCAA 10402
.......... .......... .......... .......... .......... .......... 628
CACTGAAAGT TCTCACAAGT CAGAACCCTA TATTTGACAG TTGTGGTCTC CCTCCTTCCC 10462
.......... .......... .......... .......... .......... .......... 628
TCTGCATTTG TTGCTACAGA TGATTACACT GAGTTTTGTT TCTTGTCATT TAGGTTATGG 10522
.......... .......... .......... .......... .......... .......... 628
ATAATGAAAA TAAGCCAAAA GCCAGGGAAG TTGTCAAAAG ATTGATTGCT GAAGATGGAT 10582
.......... .......... .......... .......... .......... .......... 628
GGAAAGGTTT GTACAGAGGG TTGGGTCCAA GATTTTTCAG CTCATCAGCT TGGGGAACCT 10642
.......... .......... .......... .......... .......... .......... 628
CAATGATAGT ATGCTACGAG TACCTGAGTA TGTTTCGTCT TCCCTTGTCA AATGTACACA 10702
.......... .......... .......... .......... .......... .......... 628
TGCATATGTA GTGTTATATA TCACTGCATC CCATGCAGGT TAATTTTAAG TACCCAGATA 10762
.......... .......... .......... .......... .......... .......... 628
CTTCTTCTCA TTTAGAATTT AGTTAAAATG ACATCATTCA GGTCAGTTGG CATCTCCAGT 10822
.......... .......... .......... .......... .......... .......... 628
ACACTGCTTT TGTAAGTTGT ATCATAAATC CCATTTGCAA TGAAATTTTT GACTCAAGTT 10882
.......... .......... .......... .......... .......... .......... 628
GCAGCCTGTA ACTTTTCTAT ATTTTTCGAA TAAAGCTATC ACCGTACATG AAACCTGCTT 10942
.......... .......... .......... .......... .......... .......... 628
CTGTTAATGC CAAGGAGCGC ACATTATTTC CTGTAGACCG GCTTGGATGT TGAACAATTG 11002
.......... .......... .......... .......... .......... .......... 628
GCACATGCAA GTAGCAAAGA GCAGCCTTGT GCTTGCAACA ATCTGGTCCA CCTGTGGATA 11062
.......... .......... .......... .......... .......... .......... 628
TGTTCGCTGT GAAAGAAACC AATTAGTCCT TGTATGAAAC ATGGTATTAG CGCTTCATGA 11122
.......... .......... .......... .......... .......... .......... 628
ATAAAACCAC TGATTCTGAT TTCTTATTTT CAATGAATGG ATGGGCATTA CCAAAGTTAT 11182
.......... .......... .......... .......... .......... .......... 628
CATGATTAAA GATCTATTTC ATATAAGTTT ATTTTTATAC ATTAGAGTTT ATTTAGAGAA 11242
.......... .......... .......... .......... .......... .......... 628
CAAGGTATAT TTAGTTTTGG TAATTTTGTG AACTGCACTC AGACGACTTT GGTATTCTTA 11302
.......... .......... .......... .......... .......... .......... 628
CTGTAATTTT GTTTTGTTTT CCTACAGAGC GCTTGTGTGC 11342
| ||| | | |
.......... .......... .......GGG GCTCGAGGGG 641
********************************************************************************
EST sequence 20 +strand (File: 11206955+)
1 GGAATCTTTA CTGGAGTTAC AGTAGCATTA TACCCAGTCT CTGTTGTAAA AACTAGGCTT
61 CAGGTTGCTT CGAAGGACAC TGCAGAGAGA AGTGCTTTTT CTGTTATTAG AGGCATACTG
121 AAAACAGATG GAATCCCTGG TCTCTATCGA GGGTTTGGAA CAGTCATCAC TGGTGCCATT
181 CCTGCCAGGG TGATATTTCT CACTGCTCTG GAAACTACAA AAGTAGCTGC TTTCAGCATG
241 GTTGAACCAT TTAAATTCTC TGAACCTACG CAAGCTGCTA TAGCAAATGG AATTGCTGGA
301 ATGACTGCAT CTCTGTTTGC TCAAGCTGTT TTTGTTCCAA TTGATGTGAT TAGTCAAAAG
361 TTGATGGTCC AAGGATACTC AGGCCATGCA AAGTACAACG GAGGTCTAGA TGTTGCTCGT
421 AAGGTTTTAA AGTCTGATGG AATCCGAGGA TTATACAGAG GATTTGGTTT GTCAGTCATG
481 ACTTACTCTC CATCCAGTGC TGTATGGTGG GCTAGTTATG GTTCTAGCCA ACGTGTTATC
541 TGGAGGTTCT TGGGCCAGGG CACAGACCTA AAGGAAGTAG CTCCTAGTCT ATCGACAATA
601 GTGGCAGTGC AAGCTGCTGG AGGAATCATC GCAGGTGCTA CAGCTTCCTG CATCACAACT
661 CCATTGGACA CTATTAAGAC TCGCTTACAG GTGATGGGGC ATGAGAAGCG ACCTTCTACA
721 AGCAAGTCAG GAAAAACTGA ATTGCATATG ATGGTTGGAA AGGGTTCTAC AGAGGGTTGG
781 GTACAAGATT CTTCAGTTGT GAACATGGGG AACCTCAAGG ATTTTACCTT AATGATACTG
841 AGAACGGGAA TGCGTAGAAA AAGAC
Predicted gene structure (within gDNA segment 7500 to 11185):
Exon 1 8487 8720 ( 234 n); cDNA 115 348 ( 234 n); score: 0.671
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.74), Pa: 0.962 (s: 0.78)
Exon 2 8849 9045 ( 197 n); cDNA 349 545 ( 197 n); score: 0.792
Intron 2 9046 9697 ( 652 n); Pd: 0.980 (s: 0.84), Pa: 0.977 (s: 0.54)
Exon 3 9698 9839 ( 142 n); cDNA 546 690 ( 145 n); score: 0.577
Intron 3 9840 10515 ( 676 n); Pd: 0.994 (s: 0.58), Pa: 1.000 (s: 0.52)
Exon 4 10516 10650 ( 135 n); cDNA 691 823 ( 133 n); score: 0.696
MATCH 21326110+ 11206955+ 0.691 708 0.818 C
PGS_21326110+_11206955+ (8487 8720,8849 9045,9698 9839,10516 10650)
Alignment (genomic DNA sequence = upper lines):
ATCCTCAAGA TGGACGGCGT GCCAGGGCTG TACCGGGGGT TTGCTACCGT TATCATTGGG 8546
|| || || | || || | || || || || || |||| ||| || || |||| |||
ATACTGAAAA CAGATGGAAT CCCTGGTCTC TATCGAGGGT TTGGAACAGT CATCACTGGT 174
GCTGTACCAA CTAGGATCAT CTTCCTCACA GCGCTTGAGA CAACCAAAGC AGCCTCGCTT 8606
|| | || | ||| | || || ||||| || || || | | || |||| || || ||
GCCATTCCTG CCAGGGTGAT ATTTCTCACT GCTCTGGAAA CTACAAAAGT AG-CTGCTTT 233
AAGC-TTGTT GAGCCCTTCA AGCTGTCAGA GCCGGTGCGG GCTGCCTTTG CCAATGGCCT 8665
||| | ||| || || || | | | || || || || ||||| | | | ||||| |
CAGCATGGTT GAACCATTTA AATTCTCTGA ACCTACGCAA GCTGCTATAG CAAATGGAAT 293
TGCTGGTCTG TCAGCGTCTA CATGTTCGCA GGCTATTTTT GTTCCAATTG ATGTGGTATG 8725
|||||| || | || ||| | | | || ||| ||||| |||||||||| |||||
TGCTGGAATG ACTGCATCTC TGTTTGCTCA AGCTGTTTTT GTTCCAATTG ATGTG..... 348
CCTCTCATGT GCCTTCTATG TGATGTTGTA TAGAGAAAAA ATATCTTACA ATATGTTGAT 8785
.......... .......... .......... .......... .......... .......... 348
GTTAAATGCT AATTACAATA CTAGACTACT GTTTTCATTC TGTTGTGCAT TGGAATGTTT 8845
.......... .......... .......... .......... .......... .......... 348
CAGATTAGCC AGAAATTGAT GGTTCAAGGA TATTCTGGTA ATGCCAGATA CAAAGGTGGA 8905
||||| | | || ||||| ||| |||||| || || || |||| | || ||| || ||
...ATTAGTC AAAAGTTGAT GGTCCAAGGA TACTCAGGCC ATGCAAAGTA CAACGGAGGT 405
TTAGATGTTG CTCGAAAGGT CATAAAGGCT GATGGCATTA GGGGGCTGTA CAGAGGATTT 8965
||||||||| |||| ||||| ||||| || ||||| || | || | || ||||||||||
CTAGATGTTG CTCGTAAGGT TTTAAAGTCT GATGGAATCC GAGGATTATA CAGAGGATTT 465
GGACTGTCTG TTATGACCTA TGCTCCATCC AGTGCTGTGT GGTGGGCAAG TTATGGTTCC 9025
|| |||| | | ||||| || |||||||| |||||||| | ||||||| || |||||||||
GGTTTGTCAG TCATGACTTA CTCTCCATCC AGTGCTGTAT GGTGGGCTAG TTATGGTTCT 525
AGCCAGCGCA TAATTTGGAG GTTAGCTTAT CTGATTGGTT CATCGTTATG TTCCTCTCAG 9085
||||| || | || |||||
AGCCAACGTG TTATCTGGAG .......... .......... .......... .......... 545
CCCTGTGTAC TATGTAATAT TTACGAGAAA AAGACCAGTA ATACATTTCT ACTTAATAGT 9145
.......... .......... .......... .......... .......... .......... 545
TATTTGAATT GGTACTTTCC ATCTGTCCAA AACCTTTTCA AACTTCCCCT CTTGATGCTC 9205
.......... .......... .......... .......... .......... .......... 545
AAACTGCAGC TATAATTGCA ATTTTGTTTT CTGATGCTTG TTCTTCCATG TCAATATGTA 9265
.......... .......... .......... .......... .......... .......... 545
CATATCTTTT TTAGAAAACA AGAATGCATC TCAATGCATG TGCTGTATTG TTTTGATTAG 9325
.......... .......... .......... .......... .......... .......... 545
ATTTATCATA GCGATCAATC ACATTTTCTT TACAGATAAA AATAGTCGGA AGGATAAGTT 9385
.......... .......... .......... .......... .......... .......... 545
GGATAACTGA CCAAAGTGGA AATATGATCT TACATATTTT TATCTCTGGC AGCTTAGAGA 9445
.......... .......... .......... .......... .......... .......... 545
ACTTAATTAC CAACCTGAAA CAATGTGATG AAGTAACTAC ACAAAACCAC ATATAGTTTC 9505
.......... .......... .......... .......... .......... .......... 545
ATGCACTCTG CAAAACTAAA TTGAAACTCT TAGTGTGCTC TTAATGCTGT TAAGAGGGTG 9565
.......... .......... .......... .......... .......... .......... 545
TATGCAAGTT TACTGGAATC AGTACCTTTT GTTAGTTTAT TTCTTTGTGG TTGATGGTTG 9625
.......... .......... .......... .......... .......... .......... 545
AAAGATTATA TTTCTTGTCT TGATAACTTA GCCAAAATAG TTAACTATTG TGCTTTTTAC 9685
.......... .......... .......... .......... .......... .......... 545
ATATTGGAAC AGTGCTCTTG GCCATTTGCA -TGA-C-AAA -GAAGAGGCT CCTAGCCAAT 9741
| ||||| | | ||| || | ||| |||| ||| ||||| | ||
.......... ..-GTTCTTG GGCCAGGGCA CAGACCTAAA GGAAGTAGCT CCTAGTCTAT 592
TGAAACTAGT TGGTGTTCAA GCATCAGGGG GGGTTTTTGC CGGTGCCGTG ACCTCTTTTG 9801
|| | |||| | || ||| || | || | | | | || ||||| | || |
CGACAATAGT GGCAGTGCAA GCTGCTGGAG GAATCATCGC AGGTGCTACA GCTTCCTGCA 652
TTACGACTCC CATAGATACA ATAAAGACCA GGCTGCAGGT ACTGTGTGAC ATTCTGTTTG 9861
| || ||||| | || || || ||||| | | |||
TCACAACTCC ATTGGACACT ATTAAGACTC GCTTACAG.. .......... .......... 690
CTGATTACTC TTGTAATTTG ATTTGTGTGG GTATATTTTG TGAGGCTTAC CCTTGTGACT 9921
.......... .......... .......... .......... .......... .......... 690
TAATGATTCT TGTCTTTACA TTTATGCTGC TCATTTGCAA TAATTTGATT CCTTATCAAT 9981
.......... .......... .......... .......... .......... .......... 690
GCAATGCCAC TAAGTTTAGG GGAATGGATA TTTTGTTTTG GAAGTATATT TGATGTCAGA 10041
.......... .......... .......... .......... .......... .......... 690
CTTGAAGACC TAAATGTTCT TTTATACTGA TATTTCCTCC AATGGCGGGC TATTGAGGTG 10101
.......... .......... .......... .......... .......... .......... 690
CTGGACTGGA ATGCTGTCTA TATTAAACAA TATATACTTC TATGTTTACA GCTGTTTGTT 10161
.......... .......... .......... .......... .......... .......... 690
TTCTGCTGAC ATACCATGAC CAATTTGTCA TGGTTTCAGT TATGAGGTCA GAAAAAAAGA 10221
.......... .......... .......... .......... .......... .......... 690
AACTTCCATT GGGAAAACTT GATATCTATT ACTTCATTAT TTATAGTGAG TAACAAAAGT 10281
.......... .......... .......... .......... .......... .......... 690
TAGCACTTTC AAACTGACTA AAGTATGCCA GGGACGTATC ATGCATTTTA CAACATGCTC 10341
.......... .......... .......... .......... .......... .......... 690
CACATATCTC CAAATATCAC ATATTACGCT TGTAGTGGTA AACTGATAAT ACATCTACCA 10401
.......... .......... .......... .......... .......... .......... 690
ACACTGAAAG TTCTCACAAG TCAGAACCCT ATATTTGACA GTTGTGGTCT CCCTCCTTCC 10461
.......... .......... .......... .......... .......... .......... 690
CTCTGCATTT GTTGCTACAG ATGATTACAC TGAGTTTTGT TTCTTGTCAT TTAGGTTATG 10521
|| |||
.......... .......... .......... .......... .......... ....GTGATG 696
GATAATGAAA ATAAGCCAAA AGCCAGGGAA GTTGTCAAAA GATTGATTGC TGAAGATGGA 10581
| |||| | | | | || | || || |||| | ||||| | |||||
GGGCATGAGA A-GCGACCTT CTACAAGCAA GTCAGGAAAA ACTGAATTGC ATATGATGGT 755
TGGAAAGGTT TGTACAGAGG GTTGGGTCCA AGATTTTTCA GCTCATCAGC TTGGGGAACC 10641
|||||||| | | |||||||| ||||||| || ||||| |||| | | | | | |||||||||
TGGAAAGGGT TCTACAGAGG GTTGGGTACA AGATTCTTCA G-TTGTGAAC ATGGGGAACC 814
TCAATGATA 10650
|||| |||
TCAAGGATT 823
********************************************************************************
EST sequence 19 +strand (File: 18100417+)
1 GGAATCTTTA CTGGAGTTAC AGTAGCATTA TACCCAGTCT CTGTTGTAAA AACTAGGCTT
61 CAGGTTGCTT CGAAGGACAC TGCAGAGAGA AGTGCTTTTT CTGTTATTAG AGGCATACTG
121 AAAACAGATG GAATCCCTGG TCTCTATCGA GGGTTTGGAA CAGTCATCAC TGGTGCCATT
181 CCTGCCAGGG TGATATTTCT CACTGCTCTG GAAACTACAA AAGTAGCTGC TTTCAGCATG
241 GTTGAACCAT TTAAATTCTC TGAACCTACG CAAGCTGCTA TAGCAAATGG AATTGCTGGA
301 ATGACTGCAT CTCTGTTTGC TCAAGCTGTT TTTGTTCCAA TTGATGTGAT TAGTCAAAAG
361 TTGATGGTCC AAGGATACTC AGGCCATGCA AAGTACAACG GAGGTCTAGA TGTTGCTCGT
421 AAGGTTTTAA AGTCTGATGG AATCCGAGGA TTATACAGAG GATTTGGTTT GTCAGTCATG
481 ACTTACTCTC CATCCAGTGC TGTATGGTGG GCTAGTTATG GTTCTAGCCA ACGTGTTATC
541 TGGAGGTTCT TGGGCCAGGG CACAGACCTA AAGGAAGTAG CTCCTAGTCT ATCGACAATA
601 GTGGCAGTGC AAGCTGCTGG AGGAATCATC GCAGGA
Predicted gene structure (within gDNA segment 7500 to 9973):
Exon 1 8487 8720 ( 234 n); cDNA 115 348 ( 234 n); score: 0.671
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.74), Pa: 0.962 (s: 0.78)
Exon 2 8849 9045 ( 197 n); cDNA 349 545 ( 197 n); score: 0.792
Intron 2 9046 9697 ( 652 n); Pd: 0.980 (s: 0.84), Pa: 0.977 (s: 0)
Exon 3 9698 9708 ( 11 n); cDNA 546 555 ( 10 n); score: 0.727
MATCH 21326110+ 18100417+ 0.726 442 0.695 C
PGS_21326110+_18100417+ (8487 8720,8849 9045,9698 9708)
Alignment (genomic DNA sequence = upper lines):
ATCCTCAAGA TGGACGGCGT GCCAGGGCTG TACCGGGGGT TTGCTACCGT TATCATTGGG 8546
|| || || | || || | || || || || || |||| ||| || || |||| |||
ATACTGAAAA CAGATGGAAT CCCTGGTCTC TATCGAGGGT TTGGAACAGT CATCACTGGT 174
GCTGTACCAA CTAGGATCAT CTTCCTCACA GCGCTTGAGA CAACCAAAGC AGCCTCGCTT 8606
|| | || | ||| | || || ||||| || || || | | || |||| || || ||
GCCATTCCTG CCAGGGTGAT ATTTCTCACT GCTCTGGAAA CTACAAAAGT AG-CTGCTTT 233
AAGC-TTGTT GAGCCCTTCA AGCTGTCAGA GCCGGTGCGG GCTGCCTTTG CCAATGGCCT 8665
||| | ||| || || || | | | || || || || ||||| | | | ||||| |
CAGCATGGTT GAACCATTTA AATTCTCTGA ACCTACGCAA GCTGCTATAG CAAATGGAAT 293
TGCTGGTCTG TCAGCGTCTA CATGTTCGCA GGCTATTTTT GTTCCAATTG ATGTGGTATG 8725
|||||| || | || ||| | | | || ||| ||||| |||||||||| |||||
TGCTGGAATG ACTGCATCTC TGTTTGCTCA AGCTGTTTTT GTTCCAATTG ATGTG..... 348
CCTCTCATGT GCCTTCTATG TGATGTTGTA TAGAGAAAAA ATATCTTACA ATATGTTGAT 8785
.......... .......... .......... .......... .......... .......... 348
GTTAAATGCT AATTACAATA CTAGACTACT GTTTTCATTC TGTTGTGCAT TGGAATGTTT 8845
.......... .......... .......... .......... .......... .......... 348
CAGATTAGCC AGAAATTGAT GGTTCAAGGA TATTCTGGTA ATGCCAGATA CAAAGGTGGA 8905
||||| | | || ||||| ||| |||||| || || || |||| | || ||| || ||
...ATTAGTC AAAAGTTGAT GGTCCAAGGA TACTCAGGCC ATGCAAAGTA CAACGGAGGT 405
TTAGATGTTG CTCGAAAGGT CATAAAGGCT GATGGCATTA GGGGGCTGTA CAGAGGATTT 8965
||||||||| |||| ||||| ||||| || ||||| || | || | || ||||||||||
CTAGATGTTG CTCGTAAGGT TTTAAAGTCT GATGGAATCC GAGGATTATA CAGAGGATTT 465
GGACTGTCTG TTATGACCTA TGCTCCATCC AGTGCTGTGT GGTGGGCAAG TTATGGTTCC 9025
|| |||| | | ||||| || |||||||| |||||||| | ||||||| || |||||||||
GGTTTGTCAG TCATGACTTA CTCTCCATCC AGTGCTGTAT GGTGGGCTAG TTATGGTTCT 525
AGCCAGCGCA TAATTTGGAG GTTAGCTTAT CTGATTGGTT CATCGTTATG TTCCTCTCAG 9085
||||| || | || |||||
AGCCAACGTG TTATCTGGAG .......... .......... .......... .......... 545
CCCTGTGTAC TATGTAATAT TTACGAGAAA AAGACCAGTA ATACATTTCT ACTTAATAGT 9145
.......... .......... .......... .......... .......... .......... 545
TATTTGAATT GGTACTTTCC ATCTGTCCAA AACCTTTTCA AACTTCCCCT CTTGATGCTC 9205
.......... .......... .......... .......... .......... .......... 545
AAACTGCAGC TATAATTGCA ATTTTGTTTT CTGATGCTTG TTCTTCCATG TCAATATGTA 9265
.......... .......... .......... .......... .......... .......... 545
CATATCTTTT TTAGAAAACA AGAATGCATC TCAATGCATG TGCTGTATTG TTTTGATTAG 9325
.......... .......... .......... .......... .......... .......... 545
ATTTATCATA GCGATCAATC ACATTTTCTT TACAGATAAA AATAGTCGGA AGGATAAGTT 9385
.......... .......... .......... .......... .......... .......... 545
GGATAACTGA CCAAAGTGGA AATATGATCT TACATATTTT TATCTCTGGC AGCTTAGAGA 9445
.......... .......... .......... .......... .......... .......... 545
ACTTAATTAC CAACCTGAAA CAATGTGATG AAGTAACTAC ACAAAACCAC ATATAGTTTC 9505
.......... .......... .......... .......... .......... .......... 545
ATGCACTCTG CAAAACTAAA TTGAAACTCT TAGTGTGCTC TTAATGCTGT TAAGAGGGTG 9565
.......... .......... .......... .......... .......... .......... 545
TATGCAAGTT TACTGGAATC AGTACCTTTT GTTAGTTTAT TTCTTTGTGG TTGATGGTTG 9625
.......... .......... .......... .......... .......... .......... 545
AAAGATTATA TTTCTTGTCT TGATAACTTA GCCAAAATAG TTAACTATTG TGCTTTTTAC 9685
.......... .......... .......... .......... .......... .......... 545
ATATTGGAAC AGTGCTCTTG GCC 9708
| ||||| | |
.......... ..-GTTCTTG GGC 555
********************************************************************************
EST sequence 24 +strand (File: 27547342+)
1 GGGGTTTGGG ACAGTTATCA CAGGGGCCAT CCCTGCTAGG ATTATCTTTC TTACAGCGCT
61 TGAGACAACA AAGGCGGCCT CGCTTAAGCT TGTTGAACCA TTTAAGCTGT CGGAGCCGGT
121 ACAAGCAGCC TTTGCCAATG GCCTTGGCGG TTTGTCGGCA TCTCTATGTT CGCAGGCTGT
181 GTTTGTGCCC ATTGATGTGG TTAGCCAGAA ATTGATGGTT CAAGGATATT CTGGTCATGT
241 TAGATATAAG GGTGGACTTG ATGTTGCCCA ACAGATTATA AAGGCTGATG GAATTCGGGG
301 GCTGTACAGA GGATTTGGCC TGTCTGTTAT GACGTACTCA CCATCTAGTG CTGTGTGGTG
361 GGCAAGCTAT GGGTCCAGCC AGCGCATAAT TTGGAGTGCT TTTGATCATT GGAATGATAA
421 AGAAAGTTCT CCTAGTCAGT TGACAATAGT TGGTGTCCAA GCCACAGGGG GGATTATTGC
481 TGGTGCAGTG ACATCCTGTG TTACAACTCC CATAGATACT ATCAAAACCA GACTGCAGGT
541 TAATCAAAAC AAACCAAAAG CCATGGAAGT AGTTAGAAGA TTGATTGCTG AAGATGGATG
601 GAAAGGTTTC TACAGAGGNT TAGGTCCAAG ATTTTTCAGC TCATCAGCTT GGGGTACCTC
661 AATGATAGTA TGCTATGAAT ACCTAAAGCG CTTGTGTGCT AAAGNTGAAG AGGTCTGAGT
721 CAGCTTAAAC ATATCACTCT GATGCTCGCA GTGGNGGAGN ATTTTGTAGC AAAAATCCAA
781 TAATGCTGTA TGNCAACAAC TGGGANCCAT GAGGAGGAAG CTCTCTTTCT TGCTGACTTG
841 ATACTANATA TCTTTAAAAT TTAGGGCTCT TGAGCT
Predicted gene structure (within gDNA segment 8014 to 12176):
Exon 1 8522 8720 ( 199 n); cDNA 1 199 ( 199 n); score: 0.824
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.82), Pa: 0.962 (s: 0.90)
Exon 2 8849 9045 ( 197 n); cDNA 200 396 ( 197 n); score: 0.883
Intron 2 9046 9697 ( 652 n); Pd: 0.980 (s: 0.96), Pa: 0.977 (s: 0.72)
Exon 3 9698 9839 ( 142 n); cDNA 397 538 ( 142 n); score: 0.796
Intron 3 9840 10515 ( 676 n); Pd: 0.994 (s: 0.84), Pa: 1.000 (s: 0.74)
Exon 4 10516 10669 ( 154 n); cDNA 539 686 ( 148 n); score: 0.870
Intron 4 10670 11329 ( 660 n); Pd: 0.961 (s: 0.92), Pa: 0.992 (s: 0.82)
Exon 5 11330 11448 ( 119 n); cDNA 687 797 ( 111 n); score: 0.681
MATCH 21326110+ 27547342+ 0.821 811 0.926 C
PGS_21326110+_27547342+ (8522 8720,8849 9045,9698 9839,10516 10669,11330 11448)
Alignment (genomic DNA sequence = upper lines):
GGGGTTTGCT ACCGTTATCA TTGGGGCTGT ACCAACTAGG ATCATCTTCC TCACAGCGCT 8581
|||||||| || ||||||| ||||| | || ||||| || ||||| | | ||||||||
GGGGTTTGGG ACAGTTATCA CAGGGGCCAT CCCTGCTAGG ATTATCTTTC TTACAGCGCT 60
TGAGACAACC AAAGCAGCCT CGCTTAAGCT TGTTGAGCCC TTCAAGCTGT CAGAGCCGGT 8641
||||||||| || || |||| |||||||||| |||||| || || ||||||| | ||||||||
TGAGACAACA AAGGCGGCCT CGCTTAAGCT TGTTGAACCA TTTAAGCTGT CGGAGCCGGT 120
GCGGGCTGCC TTTGCCAATG GCCTTGCTGG TCTGTCAGCG TCTACATGTT CGCAGGCTAT 8701
| || ||| |||||||||| |||||| || | |||| || ||| ||||| |||||||| |
ACAAGCAGCC TTTGCCAATG GCCTTGGCGG TTTGTCGGCA TCTCTATGTT CGCAGGCTGT 180
TTTTGTTCCA ATTGATGTGG TATGCCTCTC ATGTGCCTTC TATGTGATGT TGTATAGAGA 8761
||||| || |||||||||
GTTTGTGCCC ATTGATGTG. .......... .......... .......... .......... 199
AAAAATATCT TACAATATGT TGATGTTAAA TGCTAATTAC AATACTAGAC TACTGTTTTC 8821
.......... .......... .......... .......... .......... .......... 199
ATTCTGTTGT GCATTGGAAT GTTTCAGATT AGCCAGAAAT TGATGGTTCA AGGATATTCT 8881
|| |||||||||| |||||||||| ||||||||||
.......... .......... .......GTT AGCCAGAAAT TGATGGTTCA AGGATATTCT 232
GGTAATGCCA GATACAAAGG TGGATTAGAT GTTGCTCGAA AGGTCATAAA GGCTGATGGC 8941
||| ||| | |||| || || |||| | ||| ||||| | | || | ||||| |||||||||
GGTCATGTTA GATATAAGGG TGGACTTGAT GTTGCCCAAC AGATTATAAA GGCTGATGGA 292
ATTAGGGGGC TGTACAGAGG ATTTGGACTG TCTGTTATGA CCTATGCTCC ATCCAGTGCT 9001
||| |||||| |||||||||| |||||| ||| |||||||||| | || | || ||| ||||||
ATTCGGGGGC TGTACAGAGG ATTTGGCCTG TCTGTTATGA CGTACTCACC ATCTAGTGCT 352
GTGTGGTGGG CAAGTTATGG TTCCAGCCAG CGCATAATTT GGAGGTTAGC TTATCTGATT 9061
|||||||||| |||| ||||| ||||||||| |||||||||| ||||
GTGTGGTGGG CAAGCTATGG GTCCAGCCAG CGCATAATTT GGAG...... .......... 396
GGTTCATCGT TATGTTCCTC TCAGCCCTGT GTACTATGTA ATATTTACGA GAAAAAGACC 9121
.......... .......... .......... .......... .......... .......... 396
AGTAATACAT TTCTACTTAA TAGTTATTTG AATTGGTACT TTCCATCTGT CCAAAACCTT 9181
.......... .......... .......... .......... .......... .......... 396
TTCAAACTTC CCCTCTTGAT GCTCAAACTG CAGCTATAAT TGCAATTTTG TTTTCTGATG 9241
.......... .......... .......... .......... .......... .......... 396
CTTGTTCTTC CATGTCAATA TGTACATATC TTTTTTAGAA AACAAGAATG CATCTCAATG 9301
.......... .......... .......... .......... .......... .......... 396
CATGTGCTGT ATTGTTTTGA TTAGATTTAT CATAGCGATC AATCACATTT TCTTTACAGA 9361
.......... .......... .......... .......... .......... .......... 396
TAAAAATAGT CGGAAGGATA AGTTGGATAA CTGACCAAAG TGGAAATATG ATCTTACATA 9421
.......... .......... .......... .......... .......... .......... 396
TTTTTATCTC TGGCAGCTTA GAGAACTTAA TTACCAACCT GAAACAATGT GATGAAGTAA 9481
.......... .......... .......... .......... .......... .......... 396
CTACACAAAA CCACATATAG TTTCATGCAC TCTGCAAAAC TAAATTGAAA CTCTTAGTGT 9541
.......... .......... .......... .......... .......... .......... 396
GCTCTTAATG CTGTTAAGAG GGTGTATGCA AGTTTACTGG AATCAGTACC TTTTGTTAGT 9601
.......... .......... .......... .......... .......... .......... 396
TTATTTCTTT GTGGTTGATG GTTGAAAGAT TATATTTCTT GTCTTGATAA CTTAGCCAAA 9661
.......... .......... .......... .......... .......... .......... 396
ATAGTTAACT ATTGTGCTTT TTACATATTG GAACAGTGCT CTTGGCCATT TGCATGACAA 9721
|||| ||| |||| | |||| ||
.......... .......... .......... ......TGCT TTTGATCATT GGAATGATAA 420
AGAAGAGGCT CCTAGCCAAT TGAAACTAGT TGGTGTTCAA GCATCAGGGG GGGTTTTTGC 9781
|||| || ||||| || | ||| | |||| |||||| ||| || |||||| || || ||||
AGAAAGTTCT CCTAGTCAGT TGACAATAGT TGGTGTCCAA GCCACAGGGG GGATTATTGC 480
CGGTGCCGTG ACCTCTTTTG TTACGACTCC CATAGATACA ATAAAGACCA GGCTGCAGGT 9841
||||| ||| || || | || |||| ||||| ||||||||| || || |||| | ||||||
TGGTGCAGTG ACATCCTGTG TTACAACTCC CATAGATACT ATCAAAACCA GACTGCAG.. 538
ACTGTGTGAC ATTCTGTTTG CTGATTACTC TTGTAATTTG ATTTGTGTGG GTATATTTTG 9901
.......... .......... .......... .......... .......... .......... 538
TGAGGCTTAC CCTTGTGACT TAATGATTCT TGTCTTTACA TTTATGCTGC TCATTTGCAA 9961
.......... .......... .......... .......... .......... .......... 538
TAATTTGATT CCTTATCAAT GCAATGCCAC TAAGTTTAGG GGAATGGATA TTTTGTTTTG 10021
.......... .......... .......... .......... .......... .......... 538
GAAGTATATT TGATGTCAGA CTTGAAGACC TAAATGTTCT TTTATACTGA TATTTCCTCC 10081
.......... .......... .......... .......... .......... .......... 538
AATGGCGGGC TATTGAGGTG CTGGACTGGA ATGCTGTCTA TATTAAACAA TATATACTTC 10141
.......... .......... .......... .......... .......... .......... 538
TATGTTTACA GCTGTTTGTT TTCTGCTGAC ATACCATGAC CAATTTGTCA TGGTTTCAGT 10201
.......... .......... .......... .......... .......... .......... 538
TATGAGGTCA GAAAAAAAGA AACTTCCATT GGGAAAACTT GATATCTATT ACTTCATTAT 10261
.......... .......... .......... .......... .......... .......... 538
TTATAGTGAG TAACAAAAGT TAGCACTTTC AAACTGACTA AAGTATGCCA GGGACGTATC 10321
.......... .......... .......... .......... .......... .......... 538
ATGCATTTTA CAACATGCTC CACATATCTC CAAATATCAC ATATTACGCT TGTAGTGGTA 10381
.......... .......... .......... .......... .......... .......... 538
AACTGATAAT ACATCTACCA ACACTGAAAG TTCTCACAAG TCAGAACCCT ATATTTGACA 10441
.......... .......... .......... .......... .......... .......... 538
GTTGTGGTCT CCCTCCTTCC CTCTGCATTT GTTGCTACAG ATGATTACAC TGAGTTTTGT 10501
.......... .......... .......... .......... .......... .......... 538
TTCTTGTCAT TTAGGTTATG GATAATGAAA ATAAGCCAAA AGCCAGGGAA GTTGTCAAAA 10561
| | |||| ||| | || ||||| ||||| |||| || || | ||
.......... ....G---T- --TAATCAAA ACAAACCAAA AGCCATGGAA GTAGTTAGAA 578
GATTGATTGC TGAAGATGGA TGGAAAGGTT TGTACAGAGG GTTGGGTCCA AGATTTTTCA 10621
|||||||||| |||||||||| |||||||||| | |||||||| || |||||| ||||||||||
GATTGATTGC TGAAGATGGA TGGAAAGGTT TCTACAGAGG NTTAGGTCCA AGATTTTTCA 638
GCTCATCAGC TTGGGGAACC TCAATGATAG TATGCTACGA GTACCTGAGT ATGTTTCGTC 10681
|||||||||| |||||| ||| |||||||||| ||||||| || ||||| |
GCTCATCAGC TTGGGGTACC TCAATGATAG TATGCTATGA ATACCTAA.. .......... 686
TTCCCTTGTC AAATGTACAC ATGCATATGT AGTGTTATAT ATCACTGCAT CCCATGCAGG 10741
.......... .......... .......... .......... .......... .......... 686
TTAATTTTAA GTACCCAGAT ACTTCTTCTC ATTTAGAATT TAGTTAAAAT GACATCATTC 10801
.......... .......... .......... .......... .......... .......... 686
AGGTCAGTTG GCATCTCCAG TACACTGCTT TTGTAAGTTG TATCATAAAT CCCATTTGCA 10861
.......... .......... .......... .......... .......... .......... 686
ATGAAATTTT TGACTCAAGT TGCAGCCTGT AACTTTTCTA TATTTTTCGA ATAAAGCTAT 10921
.......... .......... .......... .......... .......... .......... 686
CACCGTACAT GAAACCTGCT TCTGTTAATG CCAAGGAGCG CACATTATTT CCTGTAGACC 10981
.......... .......... .......... .......... .......... .......... 686
GGCTTGGATG TTGAACAATT GGCACATGCA AGTAGCAAAG AGCAGCCTTG TGCTTGCAAC 11041
.......... .......... .......... .......... .......... .......... 686
AATCTGGTCC ACCTGTGGAT ATGTTCGCTG TGAAAGAAAC CAATTAGTCC TTGTATGAAA 11101
.......... .......... .......... .......... .......... .......... 686
CATGGTATTA GCGCTTCATG AATAAAACCA CTGATTCTGA TTTCTTATTT TCAATGAATG 11161
.......... .......... .......... .......... .......... .......... 686
GATGGGCATT ACCAAAGTTA TCATGATTAA AGATCTATTT CATATAAGTT TATTTTTATA 11221
.......... .......... .......... .......... .......... .......... 686
CATTAGAGTT TATTTAGAGA ACAAGGTATA TTTAGTTTTG GTAATTTTGT GAACTGCACT 11281
.......... .......... .......... .......... .......... .......... 686
CAGACGACTT TGGTATTCTT ACTGTAATTT TGTTTTGTTT TCCTACAGAG CGCTTGTGTG 11341
|| ||||||||||
.......... .......... .......... .......... ........AG CGCTTGTGTG 698
CTAAAGTTGA AGAGGTCTGA TTTCTGAGCT GCCTTAAACT CAGAACGCAA TTCCTACAAT 11401
|||||| ||| |||||||||| || | | ||||||| | || | | || |
CTAAAGNTGA AGAGGTCTGA -GTC--A--- G-CTTAAACA TATCACTCTG ATGCTCGCAG 751
TCTGGAAGTT TTGTATTAGC AGAAGTGTAA TAATGCTGTA CACCAAC 11448
| | || || | |||| | || | || |||||||||| ||||
TGGNGGAGNA TT-TTGTAGC AAAAATCCAA TAATGCTGTA TGNCAAC 797
********************************************************************************
EST sequence 97 +strand (File: 17074557+)
1 GCTGCATTTA AGATGGTTGA ACCGTTCAAA CTATCAGAAC CTGTACAGGC AGCTATAGCA
61 AATGGTGTTG CTGGCATGCT GGCGTCTCTT TGTTCACAAT CTGTCTTTGT TCCAATTGAC
121 ATAGTTAGTC AAAGGTTAAT GGTGCAAGGA TACTCAGGAC ATGCAAGCTA CAATGGAGGC
181 TTGGATGTTG CTCGCAAAGT TCTGAAGTCA GAAGGTATTC GTGGACTATA TAGAGGATTC
241 AGTCTATCTG TTCTAACATA CTCCCCATCC AGTGCTGTAT GGTGGGCAAG TTATGGTTCG
301 AGCCAGCGCT TCATTTGGAG CAAGCTCTTG GATAATGGAA CTGAGCATGG TGGGCCTGCT
361 CCCAGCCAGG GGAAAATAGT GTCAGTTCAA GCTGCTGGTG GGATCATTGC TGGTGCTACT
421 GCATCTTGCA TAACAACTCC ATTGGACACC ATTAAAACTC GGTTGCAGGT GATGGGACAC
481 GACAAGAGAC CTACTGCACG GCAAGTAGTT AAGCAGCTAA TTGCCGAGGA TGGTTGGACA
541 GGATTTTACA GGGGATTAGG TCCAAGATTT GTCAGCATGT CAGCGTGGGG AACCTCCATG
601 ATACTTGCCT ATGAATATCT CAAGCGCTTG TGTTCAGTAA ACGAATAGAT TGATGAAAGC
661 TAGCTGCCAG ACGACTCTTG CAGTAGGGTT TTTATACTAC TGACATACAG TATTGAGAGC
721 TGGAGATACA AGAACGCGGC TGA
Predicted gene structure (within gDNA segment 7878 to 11787):
Exon 1 8598 8720 ( 123 n); cDNA 1 123 ( 123 n); score: 0.699
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.68), Pa: 0.962 (s: 0.74)
Exon 2 8849 9045 ( 197 n); cDNA 124 320 ( 197 n); score: 0.772
Intron 2 9046 9437 ( 392 n); Pd: 0.980 (s: 0.92), Pa: 0.936 (s: 0.45)
Exon 3 9438 9477 ( 40 n); cDNA 321 357 ( 37 n); score: 0.450
Intron 3 9478 9728 ( 251 n); Pd: 0.869 (s: 0.45), Pa: 0.000 (s: 0.68)
Exon 4 9729 9839 ( 111 n); cDNA 358 468 ( 111 n); score: 0.658
Intron 4 9840 10515 ( 676 n); Pd: 0.994 (s: 0.62), Pa: 1.000 (s: 0.56)
Exon 5 10516 10669 ( 154 n); cDNA 469 622 ( 154 n); score: 0.701
Intron 5 10670 11329 ( 660 n); Pd: 0.961 (s: 0.74), Pa: 0.992 (s: 0)
Exon 6 11330 11355 ( 26 n); cDNA 623 648 ( 26 n); score: 0.692
MATCH 21326110+ 17074557+ 0.716 651 0.876 C
PGS_21326110+_17074557+ (8598 8720,8849 9045,9438 9477,9729 9839,10516 10669,11330 11355)
Alignment (genomic DNA sequence = upper lines):
GCCTCGCTTA AGCTTGTTGA GCCCTTCAAG CTGTCAGAGC CGGTGCGGGC TGCCTTTGCC 8657
|| | ||| || | ||||| || ||||| || ||||| | | || | ||| || | ||
GCTGCATTTA AGATGGTTGA ACCGTTCAAA CTATCAGAAC CTGTACAGGC AGCTATAGCA 60
AATGGCCTTG CTGGTCTGTC AGCGTCTACA TGTTCGCAGG CTATTTTTGT TCCAATTGAT 8717
||||| ||| |||| || |||||| ||||| || || | ||||| |||||||||
AATGGTGTTG CTGGCATGCT GGCGTCTCTT TGTTCACAAT CTGTCTTTGT TCCAATTGAC 120
GTGGTATGCC TCTCATGTGC CTTCTATGTG ATGTTGTATA GAGAAAAAAT ATCTTACAAT 8777
|
ATA....... .......... .......... .......... .......... .......... 123
ATGTTGATGT TAAATGCTAA TTACAATACT AGACTACTGT TTTCATTCTG TTGTGCATTG 8837
.......... .......... .......... .......... .......... .......... 123
GAATGTTTCA GATTAGCCAG AAATTGATGG TTCAAGGATA TTCTGGTAAT GCCAGATACA 8897
|||| || | || |||| | |||||||| || || || || || ||||
.......... .GTTAGTCAA AGGTTAATGG TGCAAGGATA CTCAGGACAT GCAAGCTACA 172
AAGGTGGATT AGATGTTGCT CGAAAGGTCA TAAAGGCTGA TGGCATTAGG GGGCTGTACA 8957
| || || || ||||||||| || || || | ||| | || || ||| | || || || |
ATGGAGGCTT GGATGTTGCT CGCAAAGTTC TGAAGTCAGA AGGTATTCGT GGACTATATA 232
GAGGATTTGG ACTGTCTGTT ATGACCTATG CTCCATCCAG TGCTGTGTGG TGGGCAAGTT 9017
||||||| | || |||||| | || || | |||||||| |||||| ||| ||||||||||
GAGGATTCAG TCTATCTGTT CTAACATACT CCCCATCCAG TGCTGTATGG TGGGCAAGTT 292
ATGGTTCCAG CCAGCGCATA ATTTGGAGGT TAGCTTATCT GATTGGTTCA TCGTTATGTT 9077
||||||| || ||||||| | ||||||||
ATGGTTCGAG CCAGCGCTTC ATTTGGAG.. .......... .......... .......... 320
CCTCTCAGCC CTGTGTACTA TGTAATATTT ACGAGAAAAA GACCAGTAAT ACATTTCTAC 9137
.......... .......... .......... .......... .......... .......... 320
TTAATAGTTA TTTGAATTGG TACTTTCCAT CTGTCCAAAA CCTTTTCAAA CTTCCCCTCT 9197
.......... .......... .......... .......... .......... .......... 320
TGATGCTCAA ACTGCAGCTA TAATTGCAAT TTTGTTTTCT GATGCTTGTT CTTCCATGTC 9257
.......... .......... .......... .......... .......... .......... 320
AATATGTACA TATCTTTTTT AGAAAACAAG AATGCATCTC AATGCATGTG CTGTATTGTT 9317
.......... .......... .......... .......... .......... .......... 320
TTGATTAGAT TTATCATAGC GATCAATCAC ATTTTCTTTA CAGATAAAAA TAGTCGGAAG 9377
.......... .......... .......... .......... .......... .......... 320
GATAAGTTGG ATAACTGACC AAAGTGGAAA TATGATCTTA CATATTTTTA TCTCTGGCAG 9437
.......... .......... .......... .......... .......... .......... 320
CTTAGAGAAC TT-AATTACC AACCTGAAAC AATGTGATGA AGTAACTACA CAAAACCACA 9496
| | || | || || | | ||| | | | |||
C--A-AGCTC TTGGATAATG GAACTG-AGC ATGGTGGGCC T......... .......... 357
TATAGTTTCA TGCACTCTGC AAAACTAAAT TGAAACTCTT AGTGTGCTCT TAATGCTGTT 9556
.......... .......... .......... .......... .......... .......... 357
AAGAGGGTGT ATGCAAGTTT ACTGGAATCA GTACCTTTTG TTAGTTTATT TCTTTGTGGT 9616
.......... .......... .......... .......... .......... .......... 357
TGATGGTTGA AAGATTATAT TTCTTGTCTT GATAACTTAG CCAAAATAGT TAACTATTGT 9676
.......... .......... .......... .......... .......... .......... 357
GCTTTTTACA TATTGGAACA GTGCTCTTGG CCATTTGCAT GACAAAGAAG AGGCTCCTAG 9736
||||| ||
.......... .......... .......... .......... .......... ..GCTCCCAG 365
CCAATTGAAA CTAGTTGGTG TTCAAGCATC AGGGGGGGTT TTTGCCGGTG CCGTGACCTC 9796
||| |||| |||| | ||||||| | || ||| | |||| |||| | | ||
CCAGGGGAAA ATAGTGTCAG TTCAAGCTGC TGGTGGGATC ATTGCTGGTG CTACTGCATC 425
TTTTGTTACG ACTCCCATAG ATACAATAAA GACCAGGCTG CAGGTACTGT GTGACATTCT 9856
|| | || ||||| | | | || || || || || || |||
TTGCATAACA ACTCCATTGG ACACCATTAA AACTCGGTTG CAG....... .......... 468
GTTTGCTGAT TACTCTTGTA ATTTGATTTG TGTGGGTATA TTTTGTGAGG CTTACCCTTG 9916
.......... .......... .......... .......... .......... .......... 468
TGACTTAATG ATTCTTGTCT TTACATTTAT GCTGCTCATT TGCAATAATT TGATTCCTTA 9976
.......... .......... .......... .......... .......... .......... 468
TCAATGCAAT GCCACTAAGT TTAGGGGAAT GGATATTTTG TTTTGGAAGT ATATTTGATG 10036
.......... .......... .......... .......... .......... .......... 468
TCAGACTTGA AGACCTAAAT GTTCTTTTAT ACTGATATTT CCTCCAATGG CGGGCTATTG 10096
.......... .......... .......... .......... .......... .......... 468
AGGTGCTGGA CTGGAATGCT GTCTATATTA AACAATATAT ACTTCTATGT TTACAGCTGT 10156
.......... .......... .......... .......... .......... .......... 468
TTGTTTTCTG CTGACATACC ATGACCAATT TGTCATGGTT TCAGTTATGA GGTCAGAAAA 10216
.......... .......... .......... .......... .......... .......... 468
AAAGAAACTT CCATTGGGAA AACTTGATAT CTATTACTTC ATTATTTATA GTGAGTAACA 10276
.......... .......... .......... .......... .......... .......... 468
AAAGTTAGCA CTTTCAAACT GACTAAAGTA TGCCAGGGAC GTATCATGCA TTTTACAACA 10336
.......... .......... .......... .......... .......... .......... 468
TGCTCCACAT ATCTCCAAAT ATCACATATT ACGCTTGTAG TGGTAAACTG ATAATACATC 10396
.......... .......... .......... .......... .......... .......... 468
TACCAACACT GAAAGTTCTC ACAAGTCAGA ACCCTATATT TGACAGTTGT GGTCTCCCTC 10456
.......... .......... .......... .......... .......... .......... 468
CTTCCCTCTG CATTTGTTGC TACAGATGAT TACACTGAGT TTTGTTTCTT GTCATTTAGG 10516
|
.......... .......... .......... .......... .......... .........G 469
TTATGGATAA TGAAAATAAG CCAAAAGCCA GGGAAGTTGT CAAAAGATTG ATTGCTGAAG 10576
| |||| | || || | || | || || |||| || || | ||||| || |
TGATGGGACA CGACAAGAGA CCTACTGCAC GGCAAGTAGT TAAGCAGCTA ATTGCCGAGG 529
ATGGATGGAA AGGTTTGTAC AGAGGGTTGG GTCCAAGATT TTTCAGCTCA TCAGCTTGGG 10636
|||| |||| ||| || ||| || || || | |||||||||| | ||||| ||||| ||||
ATGGTTGGAC AGGATTTTAC AGGGGATTAG GTCCAAGATT TGTCAGCATG TCAGCGTGGG 589
GAACCTCAAT GATAGTATGC TACGAGTACC TGAGTATGTT TCGTCTTCCC TTGTCAAATG 10696
||||||| || |||| | | || || || | | |
GAACCTCCAT GATACTTGCC TATGAATATC TCA....... .......... .......... 622
TACACATGCA TATGTAGTGT TATATATCAC TGCATCCCAT GCAGGTTAAT TTTAAGTACC 10756
.......... .......... .......... .......... .......... .......... 622
CAGATACTTC TTCTCATTTA GAATTTAGTT AAAATGACAT CATTCAGGTC AGTTGGCATC 10816
.......... .......... .......... .......... .......... .......... 622
TCCAGTACAC TGCTTTTGTA AGTTGTATCA TAAATCCCAT TTGCAATGAA ATTTTTGACT 10876
.......... .......... .......... .......... .......... .......... 622
CAAGTTGCAG CCTGTAACTT TTCTATATTT TTCGAATAAA GCTATCACCG TACATGAAAC 10936
.......... .......... .......... .......... .......... .......... 622
CTGCTTCTGT TAATGCCAAG GAGCGCACAT TATTTCCTGT AGACCGGCTT GGATGTTGAA 10996
.......... .......... .......... .......... .......... .......... 622
CAATTGGCAC ATGCAAGTAG CAAAGAGCAG CCTTGTGCTT GCAACAATCT GGTCCACCTG 11056
.......... .......... .......... .......... .......... .......... 622
TGGATATGTT CGCTGTGAAA GAAACCAATT AGTCCTTGTA TGAAACATGG TATTAGCGCT 11116
.......... .......... .......... .......... .......... .......... 622
TCATGAATAA AACCACTGAT TCTGATTTCT TATTTTCAAT GAATGGATGG GCATTACCAA 11176
.......... .......... .......... .......... .......... .......... 622
AGTTATCATG ATTAAAGATC TATTTCATAT AAGTTTATTT TTATACATTA GAGTTTATTT 11236
.......... .......... .......... .......... .......... .......... 622
AGAGAACAAG GTATATTTAG TTTTGGTAAT TTTGTGAACT GCACTCAGAC GACTTTGGTA 11296
.......... .......... .......... .......... .......... .......... 622
TTCTTACTGT AATTTTGTTT TGTTTTCCTA CAGAGCGCTT GTGTGCTAAA GTTGAAGAG 11355
||||||| |||| | | ||| ||
.......... .......... .......... ...AGCGCTT GTGTTCAGTA AACGAATAG 648
********************************************************************************
EST sequence 139 -strand (File: 10093099-)
1 CCTTGGTGGT TTGACGGCGT CTCTGTGCTC GCAGGCCGTG TTTGTGCCCA TTGATGTGGT
61 TAGCCAGAAA TTGATGGTTC AAGGATATTC TGGTCATGTC AAATATAAGG GTGGAATAGA
121 TGTTGTTCAA AAGATTATGA AGGCTGACGG GCCACGGGGA CTGTACAGAG GATTTGGCCT
181 GTCTGTTATG ACGTATGCAC CGTCTAGCGC TGTTTGGTGG GCGAGCTATG GATTCAGCCA
241 GCGTATAATT TGGAGTGCTC TTGGCCGTTT GAATGATAAA GAAGATACTC CTAGTCAGTT
301 GAAAATAGTC GGTGTTCAAG CAACAGGGGG AATGATTGCT GGGGCAGTGA CCTCTTGTGT
361 TTCAACTCCT CTAGATACAA TCAAAACCAG GCTGCAGGTT AATGTAAACA AGCCAAAAGC
421 CAGTGAGGTA GTTAGAAGAT TGATCGCTGA AGATGGATGG AAAGGTTTTT ACAGAGGGTT
481 AGGTCCAAGG TTTTTCAGCT CATCTGCCTG GGGTACATCA ATGATCGTAT GCTACGAATA
541 CTTAAAGCGT GTATGTGCTA AAGTTGAAGA GGTCTGAGTC GCGGGACATC TCCTTATGTG
601 GTTCCTGCAA AAACGCTGGA ATTTTTGTTA GCCGAAATGC AACAATACTA CAAGAAGACA
661 TCAGTGACAC CCACCTGAAG CTCTGTTTCT CGCTGACTTG ATAGCTAGAC AGTGGTTCTT
721 ACAAACTCTG GTGCCCCTGG AGGGTATATT TTTGTTTTGA GAATCTTTGA GGCTTGTATT
781 ATCTGCCTCT AGTGACAGCG NTATGGATTA GGCAGAATGC TCATATAAAC C
Predicted gene structure (within gDNA segment 8250 to 12020):
Exon 1 8663 8720 ( 58 n); cDNA 1 58 ( 58 n); score: 0.776
Intron 1 8721 8848 ( 128 n); Pd: 0.857 (s: 0.76), Pa: 0.962 (s: 0.90)
Exon 2 8849 9045 ( 197 n); cDNA 59 255 ( 197 n); score: 0.843
Intron 2 9046 9697 ( 652 n); Pd: 0.980 (s: 0.86), Pa: 0.977 (s: 0.84)
Exon 3 9698 9839 ( 142 n); cDNA 256 397 ( 142 n); score: 0.831
Intron 3 9840 10515 ( 676 n); Pd: 0.994 (s: 0.86), Pa: 1.000 (s: 0.74)
Exon 4 10516 10669 ( 154 n); cDNA 398 545 ( 148 n); score: 0.838
Intron 4 10670 11329 ( 660 n); Pd: 0.961 (s: 0.84), Pa: 0.992 (s: 0.72)
Exon 5 11330 11438 ( 109 n); cDNA 546 649 ( 104 n); score: 0.670
MATCH 21326110+ 10093099- 0.805 660 0.794 C
PGS_21326110+_10093099- (8663 8720,8849 9045,9698 9839,10516 10669,11330 11438)
Alignment (genomic DNA sequence = upper lines):
CCTTGCTGGT CTGTCAGCGT CTACATGTTC GCAGGCTATT TTTGTTCCAA TTGATGTGGT 8722
||||| |||| || | |||| || || || |||||| | ||||| || | ||||||||
CCTTGGTGGT TTGACGGCGT CTCTGTGCTC GCAGGCCGTG TTTGTGCCCA TTGATGTG.. 58
ATGCCTCTCA TGTGCCTTCT ATGTGATGTT GTATAGAGAA AAAATATCTT ACAATATGTT 8782
.......... .......... .......... .......... .......... .......... 58
GATGTTAAAT GCTAATTACA ATACTAGACT ACTGTTTTCA TTCTGTTGTG CATTGGAATG 8842
.......... .......... .......... .......... .......... .......... 58
TTTCAGATTA GCCAGAAATT GATGGTTCAA GGATATTCTG GTAATGCCAG ATACAAAGGT 8902
||| |||||||||| |||||||||| |||||||||| || ||| || ||| || |||
......GTTA GCCAGAAATT GATGGTTCAA GGATATTCTG GTCATGTCAA ATATAAGGGT 112
GGATTAGATG TTGCTCGAAA GGTCATAAAG GCTGATGGCA TTAGGGGGCT GTACAGAGGA 8962
||| |||||| ||| || ||| | | || ||| ||||| || |||| || ||||||||||
GGAATAGATG TTGTTCAAAA GATTATGAAG GCTGACGGGC CACGGGGACT GTACAGAGGA 172
TTTGGACTGT CTGTTATGAC CTATGCTCCA TCCAGTGCTG TGTGGTGGGC AAGTTATGGT 9022
||||| |||| |||||||||| ||||| || || || |||| | |||||||| || |||||
TTTGGCCTGT CTGTTATGAC GTATGCACCG TCTAGCGCTG TTTGGTGGGC GAGCTATGGA 232
TCCAGCCAGC GCATAATTTG GAGGTTAGCT TATCTGATTG GTTCATCGTT ATGTTCCTCT 9082
| |||||||| | |||||||| |||
TTCAGCCAGC GTATAATTTG GAG....... .......... .......... .......... 255
CAGCCCTGTG TACTATGTAA TATTTACGAG AAAAAGACCA GTAATACATT TCTACTTAAT 9142
.......... .......... .......... .......... .......... .......... 255
AGTTATTTGA ATTGGTACTT TCCATCTGTC CAAAACCTTT TCAAACTTCC CCTCTTGATG 9202
.......... .......... .......... .......... .......... .......... 255
CTCAAACTGC AGCTATAATT GCAATTTTGT TTTCTGATGC TTGTTCTTCC ATGTCAATAT 9262
.......... .......... .......... .......... .......... .......... 255
GTACATATCT TTTTTAGAAA ACAAGAATGC ATCTCAATGC ATGTGCTGTA TTGTTTTGAT 9322
.......... .......... .......... .......... .......... .......... 255
TAGATTTATC ATAGCGATCA ATCACATTTT CTTTACAGAT AAAAATAGTC GGAAGGATAA 9382
.......... .......... .......... .......... .......... .......... 255
GTTGGATAAC TGACCAAAGT GGAAATATGA TCTTACATAT TTTTATCTCT GGCAGCTTAG 9442
.......... .......... .......... .......... .......... .......... 255
AGAACTTAAT TACCAACCTG AAACAATGTG ATGAAGTAAC TACACAAAAC CACATATAGT 9502
.......... .......... .......... .......... .......... .......... 255
TTCATGCACT CTGCAAAACT AAATTGAAAC TCTTAGTGTG CTCTTAATGC TGTTAAGAGG 9562
.......... .......... .......... .......... .......... .......... 255
GTGTATGCAA GTTTACTGGA ATCAGTACCT TTTGTTAGTT TATTTCTTTG TGGTTGATGG 9622
.......... .......... .......... .......... .......... .......... 255
TTGAAAGATT ATATTTCTTG TCTTGATAAC TTAGCCAAAA TAGTTAACTA TTGTGCTTTT 9682
.......... .......... .......... .......... .......... .......... 255
TACATATTGG AACAGTGCTC TTGGCCATTT GCATGACAAA GAAGAGGCTC CTAGCCAATT 9742
||||| |||||| ||| | |||| ||| ||||| ||| |||| || ||
.......... .....TGCTC TTGGCCGTTT GAATGATAAA GAAGATACTC CTAGTCAGTT 300
GAAACTAGTT GGTGTTCAAG CATCAGGGGG GGTTTTTGCC GGTGCCGTGA CCTCTTTTGT 9802
|||| |||| |||||||||| || ||||||| | |||| || || |||| |||||| |||
GAAAATAGTC GGTGTTCAAG CAACAGGGGG AATGATTGCT GGGGCAGTGA CCTCTTGTGT 360
TACGACTCCC ATAGATACAA TAAAGACCAG GCTGCAGGTA CTGTGTGACA TTCTGTTTGC 9862
| | ||||| ||||||||| | || ||||| |||||||
TTCAACTCCT CTAGATACAA TCAAAACCAG GCTGCAG... .......... .......... 397
TGATTACTCT TGTAATTTGA TTTGTGTGGG TATATTTTGT GAGGCTTACC CTTGTGACTT 9922
.......... .......... .......... .......... .......... .......... 397
AATGATTCTT GTCTTTACAT TTATGCTGCT CATTTGCAAT AATTTGATTC CTTATCAATG 9982
.......... .......... .......... .......... .......... .......... 397
CAATGCCACT AAGTTTAGGG GAATGGATAT TTTGTTTTGG AAGTATATTT GATGTCAGAC 10042
.......... .......... .......... .......... .......... .......... 397
TTGAAGACCT AAATGTTCTT TTATACTGAT ATTTCCTCCA ATGGCGGGCT ATTGAGGTGC 10102
.......... .......... .......... .......... .......... .......... 397
TGGACTGGAA TGCTGTCTAT ATTAAACAAT ATATACTTCT ATGTTTACAG CTGTTTGTTT 10162
.......... .......... .......... .......... .......... .......... 397
TCTGCTGACA TACCATGACC AATTTGTCAT GGTTTCAGTT ATGAGGTCAG AAAAAAAGAA 10222
.......... .......... .......... .......... .......... .......... 397
ACTTCCATTG GGAAAACTTG ATATCTATTA CTTCATTATT TATAGTGAGT AACAAAAGTT 10282
.......... .......... .......... .......... .......... .......... 397
AGCACTTTCA AACTGACTAA AGTATGCCAG GGACGTATCA TGCATTTTAC AACATGCTCC 10342
.......... .......... .......... .......... .......... .......... 397
ACATATCTCC AAATATCACA TATTACGCTT GTAGTGGTAA ACTGATAATA CATCTACCAA 10402
.......... .......... .......... .......... .......... .......... 397
CACTGAAAGT TCTCACAAGT CAGAACCCTA TATTTGACAG TTGTGGTCTC CCTCCTTCCC 10462
.......... .......... .......... .......... .......... .......... 397
TCTGCATTTG TTGCTACAGA TGATTACACT GAGTTTTGTT TCTTGTCATT TAGGTTATGG 10522
| |
.......... .......... .......... .......... .......... ...G---T-- 399
ATAATGAAAA TAAGCCAAAA GCCAGGGAAG TTGTCAAAAG ATTGATTGCT GAAGATGGAT 10582
||||| ||| ||||||||| ||||| || | | || | ||| |||||| ||| ||||||||||
-TAATGTAAA CAAGCCAAAA GCCAGTGAGG TAGTTAGAAG ATTGATCGCT GAAGATGGAT 458
GGAAAGGTTT GTACAGAGGG TTGGGTCCAA GATTTTTCAG CTCATCAGCT TGGGGAACCT 10642
|||||||||| ||||||||| || ||||||| | |||||||| |||||| || ||||| || |
GGAAAGGTTT TTACAGAGGG TTAGGTCCAA GGTTTTTCAG CTCATCTGCC TGGGGTACAT 518
CAATGATAGT ATGCTACGAG TACCTGAGTA TGTTTCGTCT TCCCTTGTCA AATGTACACA 10702
||||||| || ||||||||| ||| | |
CAATGATCGT ATGCTACGAA TACTTAA... .......... .......... .......... 545
TGCATATGTA GTGTTATATA TCACTGCATC CCATGCAGGT TAATTTTAAG TACCCAGATA 10762
.......... .......... .......... .......... .......... .......... 545
CTTCTTCTCA TTTAGAATTT AGTTAAAATG ACATCATTCA GGTCAGTTGG CATCTCCAGT 10822
.......... .......... .......... .......... .......... .......... 545
ACACTGCTTT TGTAAGTTGT ATCATAAATC CCATTTGCAA TGAAATTTTT GACTCAAGTT 10882
.......... .......... .......... .......... .......... .......... 545
GCAGCCTGTA ACTTTTCTAT ATTTTTCGAA TAAAGCTATC ACCGTACATG AAACCTGCTT 10942
.......... .......... .......... .......... .......... .......... 545
CTGTTAATGC CAAGGAGCGC ACATTATTTC CTGTAGACCG GCTTGGATGT TGAACAATTG 11002
.......... .......... .......... .......... .......... .......... 545
GCACATGCAA GTAGCAAAGA GCAGCCTTGT GCTTGCAACA ATCTGGTCCA CCTGTGGATA 11062
.......... .......... .......... .......... .......... .......... 545
TGTTCGCTGT GAAAGAAACC AATTAGTCCT TGTATGAAAC ATGGTATTAG CGCTTCATGA 11122
.......... .......... .......... .......... .......... .......... 545
ATAAAACCAC TGATTCTGAT TTCTTATTTT CAATGAATGG ATGGGCATTA CCAAAGTTAT 11182
.......... .......... .......... .......... .......... .......... 545
CATGATTAAA GATCTATTTC ATATAAGTTT ATTTTTATAC ATTAGAGTTT ATTTAGAGAA 11242
.......... .......... .......... .......... .......... .......... 545
CAAGGTATAT TTAGTTTTGG TAATTTTGTG AACTGCACTC AGACGACTTT GGTATTCTTA 11302
.......... .......... .......... .......... .......... .......... 545
CTGTAATTTT GTTTTGTTTT CCTACAGAGC GCTTGTGTGC TAAAGTTGAA GAGGTCTGAT 11362
||| | | ||||| |||||||||| |||||||||
.......... .......... .......AGC GTGTATGTGC TAAAGTTGAA GAGGTCTGA- 577
TTCTGAGCTG CCTTAAACTC AGAACGCAAT TCCTACAATT CTGGAAGTTT TGTATTAGCA 11422
|| | | | | | || | | | | | || |||||| ||| | | |||||
GTC-GCG-GG ACATCTCCTT ATGTGGTTCC TGCAAAAACG CTGGAA-TTT T-TGTTAGCC 633
GAAGTGTAAT AATGCT 11438
||| || || ||| ||
GAAATGCAAC AATACT 649
********************************************************************************
EST sequence 28 +strand (File: 18260535+)
1 CTCAGGACAT GCAAGCTACA ATGGAGGCTT GGATGTTGCT CGCAAAGTTC TGAAGTCAGA
61 AGGTATACGT GGACTATATA GAGGATTCAG TCTGTCTGTT CTAACATACT CCCCATCCAG
121 TGCTGTATGG TGGGCAAGTT ATGGTTCGAG CCAGCGCTTC ATATGGAGCA AGCTCTTGGA
181 TAATGGAACT GAGCATGGTG GGCCTGCTCC CAGCCAGGGG AAAATAGTGT CAGTTCAAGC
241 TGCTGGTGGG ATCATCGCCG GTGCTACTGC ATCTTGCATA ACAACTCCAT TGGACACCAT
301 TAAAACTAGG TTGCAGGTGA TGGGACACGA TAAGAGACCT AGTGCAGGGC AAGTAGTTAA
361 GCAGCTAATT GCTGAGGATG GTTGGACAGG ATTTTACAGG GGATTAGGTC CAAGATTTGT
421 CAGCATGTCA GCGTGGGGAA CCTCCATGAT ACTTGCCTAT GAATATCTCA AGCGCTTGTG
481 TGCAGTAAAC GAATAGATTG ATGAAAGCTA GCTGCCAGAC GACTCTTGCG GTAGGATTTT
541 TATACTACTG ACATACAGTA TTTGAGAGCT GGAGATAACA AGACCGCGGC TG
Predicted gene structure (within gDNA segment 8130 to 12192):
Exon 1 8878 9045 ( 168 n); cDNA 1 168 ( 168 n); score: 0.768
Intron 1 9046 9437 ( 392 n); Pd: 0.980 (s: 0.90), Pa: 0.936 (s: 0.45)
Exon 2 9438 9477 ( 40 n); cDNA 169 205 ( 37 n); score: 0.450
Intron 2 9478 9728 ( 251 n); Pd: 0.869 (s: 0.45), Pa: 0.000 (s: 0.68)
Exon 3 9729 9839 ( 111 n); cDNA 206 316 ( 111 n); score: 0.667
Intron 3 9840 10515 ( 676 n); Pd: 0.994 (s: 0.64), Pa: 1.000 (s: 0.56)
Exon 4 10516 10669 ( 154 n); cDNA 317 470 ( 154 n); score: 0.708
Intron 4 10670 11329 ( 660 n); Pd: 0.961 (s: 0.74), Pa: 0.992 (s: 0)
Exon 5 11330 11355 ( 26 n); cDNA 471 496 ( 26 n); score: 0.731
MATCH 21326110+ 18260535+ 0.721 499 0.843 C
PGS_21326110+_18260535+ (8878 9045,9438 9477,9729 9839,10516 10669,11330 11355)
Alignment (genomic DNA sequence = upper lines):
TTCTGGTAAT GCCAGATACA AAGGTGGATT AGATGTTGCT CGAAAGGTCA TAAAGGCTGA 8937
|| || || || || |||| | || || || ||||||||| || || || | ||| | ||
CTCAGGACAT GCAAGCTACA ATGGAGGCTT GGATGTTGCT CGCAAAGTTC TGAAGTCAGA 60
TGGCATTAGG GGGCTGTACA GAGGATTTGG ACTGTCTGTT ATGACCTATG CTCCATCCAG 8997
|| || | || || || | ||||||| | ||||||||| | || || | ||||||||
AGGTATACGT GGACTATATA GAGGATTCAG TCTGTCTGTT CTAACATACT CCCCATCCAG 120
TGCTGTGTGG TGGGCAAGTT ATGGTTCCAG CCAGCGCATA ATTTGGAGGT TAGCTTATCT 9057
|||||| ||| |||||||||| ||||||| || ||||||| | || |||||
TGCTGTATGG TGGGCAAGTT ATGGTTCGAG CCAGCGCTTC ATATGGAG.. .......... 168
GATTGGTTCA TCGTTATGTT CCTCTCAGCC CTGTGTACTA TGTAATATTT ACGAGAAAAA 9117
.......... .......... .......... .......... .......... .......... 168
GACCAGTAAT ACATTTCTAC TTAATAGTTA TTTGAATTGG TACTTTCCAT CTGTCCAAAA 9177
.......... .......... .......... .......... .......... .......... 168
CCTTTTCAAA CTTCCCCTCT TGATGCTCAA ACTGCAGCTA TAATTGCAAT TTTGTTTTCT 9237
.......... .......... .......... .......... .......... .......... 168
GATGCTTGTT CTTCCATGTC AATATGTACA TATCTTTTTT AGAAAACAAG AATGCATCTC 9297
.......... .......... .......... .......... .......... .......... 168
AATGCATGTG CTGTATTGTT TTGATTAGAT TTATCATAGC GATCAATCAC ATTTTCTTTA 9357
.......... .......... .......... .......... .......... .......... 168
CAGATAAAAA TAGTCGGAAG GATAAGTTGG ATAACTGACC AAAGTGGAAA TATGATCTTA 9417
.......... .......... .......... .......... .......... .......... 168
CATATTTTTA TCTCTGGCAG CTTAGAGAAC TT-AATTACC AACCTGAAAC AATGTGATGA 9476
| | || | || || | | ||| | | | |||
.......... .......... C--A-AGCTC TTGGATAATG GAACTG-AGC ATGGTGGGCC 204
AGTAACTACA CAAAACCACA TATAGTTTCA TGCACTCTGC AAAACTAAAT TGAAACTCTT 9536
T......... .......... .......... .......... .......... .......... 205
AGTGTGCTCT TAATGCTGTT AAGAGGGTGT ATGCAAGTTT ACTGGAATCA GTACCTTTTG 9596
.......... .......... .......... .......... .......... .......... 205
TTAGTTTATT TCTTTGTGGT TGATGGTTGA AAGATTATAT TTCTTGTCTT GATAACTTAG 9656
.......... .......... .......... .......... .......... .......... 205
CCAAAATAGT TAACTATTGT GCTTTTTACA TATTGGAACA GTGCTCTTGG CCATTTGCAT 9716
.......... .......... .......... .......... .......... .......... 205
GACAAAGAAG AGGCTCCTAG CCAATTGAAA CTAGTTGGTG TTCAAGCATC AGGGGGGGTT 9776
||||| || ||| |||| |||| | ||||||| | || ||| |
.......... ..GCTCCCAG CCAGGGGAAA ATAGTGTCAG TTCAAGCTGC TGGTGGGATC 253
TTTGCCGGTG CCGTGACCTC TTTTGTTACG ACTCCCATAG ATACAATAAA GACCAGGCTG 9836
| ||||||| | | || || | || ||||| | | | || || || || ||| ||
ATCGCCGGTG CTACTGCATC TTGCATAACA ACTCCATTGG ACACCATTAA AACTAGGTTG 313
CAGGTACTGT GTGACATTCT GTTTGCTGAT TACTCTTGTA ATTTGATTTG TGTGGGTATA 9896
|||
CAG....... .......... .......... .......... .......... .......... 316
TTTTGTGAGG CTTACCCTTG TGACTTAATG ATTCTTGTCT TTACATTTAT GCTGCTCATT 9956
.......... .......... .......... .......... .......... .......... 316
TGCAATAATT TGATTCCTTA TCAATGCAAT GCCACTAAGT TTAGGGGAAT GGATATTTTG 10016
.......... .......... .......... .......... .......... .......... 316
TTTTGGAAGT ATATTTGATG TCAGACTTGA AGACCTAAAT GTTCTTTTAT ACTGATATTT 10076
.......... .......... .......... .......... .......... .......... 316
CCTCCAATGG CGGGCTATTG AGGTGCTGGA CTGGAATGCT GTCTATATTA AACAATATAT 10136
.......... .......... .......... .......... .......... .......... 316
ACTTCTATGT TTACAGCTGT TTGTTTTCTG CTGACATACC ATGACCAATT TGTCATGGTT 10196
.......... .......... .......... .......... .......... .......... 316
TCAGTTATGA GGTCAGAAAA AAAGAAACTT CCATTGGGAA AACTTGATAT CTATTACTTC 10256
.......... .......... .......... .......... .......... .......... 316
ATTATTTATA GTGAGTAACA AAAGTTAGCA CTTTCAAACT GACTAAAGTA TGCCAGGGAC 10316
.......... .......... .......... .......... .......... .......... 316
GTATCATGCA TTTTACAACA TGCTCCACAT ATCTCCAAAT ATCACATATT ACGCTTGTAG 10376
.......... .......... .......... .......... .......... .......... 316
TGGTAAACTG ATAATACATC TACCAACACT GAAAGTTCTC ACAAGTCAGA ACCCTATATT 10436
.......... .......... .......... .......... .......... .......... 316
TGACAGTTGT GGTCTCCCTC CTTCCCTCTG CATTTGTTGC TACAGATGAT TACACTGAGT 10496
.......... .......... .......... .......... .......... .......... 316
TTTGTTTCTT GTCATTTAGG TTATGGATAA TGAAAATAAG CCAAAAGCCA GGGAAGTTGT 10556
| | |||| | || || | || | || || |||| ||
.......... .........G TGATGGGACA CGATAAGAGA CCTAGTGCAG GGCAAGTAGT 357
CAAAAGATTG ATTGCTGAAG ATGGATGGAA AGGTTTGTAC AGAGGGTTGG GTCCAAGATT 10616
|| | |||||||| | |||| |||| ||| || ||| || || || | ||||||||||
TAAGCAGCTA ATTGCTGAGG ATGGTTGGAC AGGATTTTAC AGGGGATTAG GTCCAAGATT 417
TTTCAGCTCA TCAGCTTGGG GAACCTCAAT GATAGTATGC TACGAGTACC TGAGTATGTT 10676
| ||||| ||||| |||| ||||||| || |||| | | || || || | | |
TGTCAGCATG TCAGCGTGGG GAACCTCCAT GATACTTGCC TATGAATATC TCA....... 470
TCGTCTTCCC TTGTCAAATG TACACATGCA TATGTAGTGT TATATATCAC TGCATCCCAT 10736
.......... .......... .......... .......... .......... .......... 470
GCAGGTTAAT TTTAAGTACC CAGATACTTC TTCTCATTTA GAATTTAGTT AAAATGACAT 10796
.......... .......... .......... .......... .......... .......... 470
CATTCAGGTC AGTTGGCATC TCCAGTACAC TGCTTTTGTA AGTTGTATCA TAAATCCCAT 10856
.......... .......... .......... .......... .......... .......... 470
TTGCAATGAA ATTTTTGACT CAAGTTGCAG CCTGTAACTT TTCTATATTT TTCGAATAAA 10916
.......... .......... .......... .......... .......... .......... 470
GCTATCACCG TACATGAAAC CTGCTTCTGT TAATGCCAAG GAGCGCACAT TATTTCCTGT 10976
.......... .......... .......... .......... .......... .......... 470
AGACCGGCTT GGATGTTGAA CAATTGGCAC ATGCAAGTAG CAAAGAGCAG CCTTGTGCTT 11036
.......... .......... .......... .......... .......... .......... 470
GCAACAATCT GGTCCACCTG TGGATATGTT CGCTGTGAAA GAAACCAATT AGTCCTTGTA 11096
.......... .......... .......... .......... .......... .......... 470
TGAAACATGG TATTAGCGCT TCATGAATAA AACCACTGAT TCTGATTTCT TATTTTCAAT 11156
.......... .......... .......... .......... .......... .......... 470
GAATGGATGG GCATTACCAA AGTTATCATG ATTAAAGATC TATTTCATAT AAGTTTATTT 11216
.......... .......... .......... .......... .......... .......... 470
TTATACATTA GAGTTTATTT AGAGAACAAG GTATATTTAG TTTTGGTAAT TTTGTGAACT 11276
.......... .......... .......... .......... .......... .......... 470
GCACTCAGAC GACTTTGGTA TTCTTACTGT AATTTTGTTT TGTTTTCCTA CAGAGCGCTT 11336
|||||||
.......... .......... .......... .......... .......... ...AGCGCTT 477
GTGTGCTAAA GTTGAAGAG 11355
|||||| | ||| ||
GTGTGCAGTA AACGAATAG 496
********************************************************************************
EST sequence 136 -strand (File: 14528874-)
1 CGTTTGAATG ATAAAGAAGA TACTCCTAGT CAGTTGAAAA TAGTCGGTGT TCAAGCAACA
61 GGGGGAATGG TTGCTGGGGC AGTGACCTCT TGTGTTTCAA CTCCTCTAGA TACAATCAAA
121 ACCAGGCTGC AGGTTAATAT CAACAAGCCA AAAGCCAGTG AAGTAGTTAG AAGATTGATC
181 GCTGAAGATG GATGGAAAGG TTTCTACAGA GGGTTAGGCC CAAGGTTTTT CAGCTCATCT
241 GCTTGGGGTA CATCAATGAT CGTATGCTAC GAATACCTAA AGCGTGTATG TGCTAAAGTT
301 GAAGAGGCCT GAGTCGCCCG ACATCTCCTT ATGTGGTTCC TGCAAAAAAC GCTGGAAGTT
361 TTGTTGGTAG CCTAAAAGCA ACAATACTAC AAGAAGGCAT CGGTGACACC CACTGAAGCT
421 CTGTTTCTCG CTGACTTGAT AGCTAGACAG TGGTTCTTAC AAGCTTTGGT GCCCCTGGAG
481 GGTATTTTTT TTGGCGGAAT ATTTGAGGCT CGTATTAGCT GCTGCCTCTA GTGACAGCTA
541 TGGGTTAGGC AGAATGCTCA TATAAACCAA GAGATCAGAT GTATTCAATT TCTATTCTTT
601 TGAACTCCAA GGCTTTGTTA TGGTGAGTCT GGTCGATTGG GGCCAGTTGT AATGACACGT
661 GAGGGGCAAG CTTCGCATTT
Predicted gene structure (within gDNA segment 9223 to 12155):
Exon 1 9708 9839 ( 132 n); cDNA 1 132 ( 132 n); score: 0.818
Intron 1 9840 10515 ( 676 n); Pd: 0.994 (s: 0.86), Pa: 1.000 (s: 0.76)
Exon 2 10516 10669 ( 154 n); cDNA 133 280 ( 148 n); score: 0.851
Intron 2 10670 11329 ( 660 n); Pd: 0.961 (s: 0.88), Pa: 0.992 (s: 0.70)
Exon 3 11330 11474 ( 145 n); cDNA 281 421 ( 141 n); score: 0.559
Intron 3 11475 11504 ( 30 n); Pd: 0.443 (s: 0.46), Pa: 0.000 (s: 0.71) ??
Exon 4 11505 11742 ( 238 n); cDNA 422 659 ( 238 n); score: 0.626
MATCH 21326110+ 14528874- 0.701 669 0.984 C
PGS_21326110+_14528874- (9708 9839,10516 10669,11330 11474,11505 11742)
Alignment (genomic DNA sequence = upper lines):
CATTTGCATG ACAAAGAAGA GGCTCCTAGC CAATTGAAAC TAGTTGGTGT TCAAGCATCA 9767
| |||| ||| | |||||||| ||||||| || |||||| |||| ||||| ||||||| ||
CGTTTGAATG ATAAAGAAGA TACTCCTAGT CAGTTGAAAA TAGTCGGTGT TCAAGCAACA 60
GGGGGGGTTT TTGCCGGTGC CGTGACCTCT TTTGTTACGA CTCCCATAGA TACAATAAAG 9827
||||| | |||| || || ||||||||| | |||| | | |||| |||| |||||| ||
GGGGGAATGG TTGCTGGGGC AGTGACCTCT TGTGTTTCAA CTCCTCTAGA TACAATCAAA 120
ACCAGGCTGC AGGTACTGTG TGACATTCTG TTTGCTGATT ACTCTTGTAA TTTGATTTGT 9887
|||||||||| ||
ACCAGGCTGC AG........ .......... .......... .......... .......... 132
GTGGGTATAT TTTGTGAGGC TTACCCTTGT GACTTAATGA TTCTTGTCTT TACATTTATG 9947
.......... .......... .......... .......... .......... .......... 132
CTGCTCATTT GCAATAATTT GATTCCTTAT CAATGCAATG CCACTAAGTT TAGGGGAATG 10007
.......... .......... .......... .......... .......... .......... 132
GATATTTTGT TTTGGAAGTA TATTTGATGT CAGACTTGAA GACCTAAATG TTCTTTTATA 10067
.......... .......... .......... .......... .......... .......... 132
CTGATATTTC CTCCAATGGC GGGCTATTGA GGTGCTGGAC TGGAATGCTG TCTATATTAA 10127
.......... .......... .......... .......... .......... .......... 132
ACAATATATA CTTCTATGTT TACAGCTGTT TGTTTTCTGC TGACATACCA TGACCAATTT 10187
.......... .......... .......... .......... .......... .......... 132
GTCATGGTTT CAGTTATGAG GTCAGAAAAA AAGAAACTTC CATTGGGAAA ACTTGATATC 10247
.......... .......... .......... .......... .......... .......... 132
TATTACTTCA TTATTTATAG TGAGTAACAA AAGTTAGCAC TTTCAAACTG ACTAAAGTAT 10307
.......... .......... .......... .......... .......... .......... 132
GCCAGGGACG TATCATGCAT TTTACAACAT GCTCCACATA TCTCCAAATA TCACATATTA 10367
.......... .......... .......... .......... .......... .......... 132
CGCTTGTAGT GGTAAACTGA TAATACATCT ACCAACACTG AAAGTTCTCA CAAGTCAGAA 10427
.......... .......... .......... .......... .......... .......... 132
CCCTATATTT GACAGTTGTG GTCTCCCTCC TTCCCTCTGC ATTTGTTGCT ACAGATGATT 10487
.......... .......... .......... .......... .......... .......... 132
ACACTGAGTT TTGTTTCTTG TCATTTAGGT TATGGATAAT GAAAATAAGC CAAAAGCCAG 10547
|| || || || || |||| ||||||||||
.......... .......... ........GT TA---AT-AT --CAACAAGC CAAAAGCCAG 158
GGAAGTTGTC AAAAGATTGA TTGCTGAAGA TGGATGGAAA GGTTTGTACA GAGGGTTGGG 10607
||||| || | |||||||| | |||||||| |||||||||| ||||| |||| ||||||| ||
TGAAGTAGTT AGAAGATTGA TCGCTGAAGA TGGATGGAAA GGTTTCTACA GAGGGTTAGG 218
TCCAAGATTT TTCAGCTCAT CAGCTTGGGG AACCTCAATG ATAGTATGCT ACGAGTACCT 10667
||||| ||| |||||||||| | |||||||| || |||||| || ||||||| |||| |||||
CCCAAGGTTT TTCAGCTCAT CTGCTTGGGG TACATCAATG ATCGTATGCT ACGAATACCT 278
GAGTATGTTT CGTCTTCCCT TGTCAAATGT ACACATGCAT ATGTAGTGTT ATATATCACT 10727
|
AA........ .......... .......... .......... .......... .......... 280
GCATCCCATG CAGGTTAATT TTAAGTACCC AGATACTTCT TCTCATTTAG AATTTAGTTA 10787
.......... .......... .......... .......... .......... .......... 280
AAATGACATC ATTCAGGTCA GTTGGCATCT CCAGTACACT GCTTTTGTAA GTTGTATCAT 10847
.......... .......... .......... .......... .......... .......... 280
AAATCCCATT TGCAATGAAA TTTTTGACTC AAGTTGCAGC CTGTAACTTT TCTATATTTT 10907
.......... .......... .......... .......... .......... .......... 280
TCGAATAAAG CTATCACCGT ACATGAAACC TGCTTCTGTT AATGCCAAGG AGCGCACATT 10967
.......... .......... .......... .......... .......... .......... 280
ATTTCCTGTA GACCGGCTTG GATGTTGAAC AATTGGCACA TGCAAGTAGC AAAGAGCAGC 11027
.......... .......... .......... .......... .......... .......... 280
CTTGTGCTTG CAACAATCTG GTCCACCTGT GGATATGTTC GCTGTGAAAG AAACCAATTA 11087
.......... .......... .......... .......... .......... .......... 280
GTCCTTGTAT GAAACATGGT ATTAGCGCTT CATGAATAAA ACCACTGATT CTGATTTCTT 11147
.......... .......... .......... .......... .......... .......... 280
ATTTTCAATG AATGGATGGG CATTACCAAA GTTATCATGA TTAAAGATCT ATTTCATATA 11207
.......... .......... .......... .......... .......... .......... 280
AGTTTATTTT TATACATTAG AGTTTATTTA GAGAACAAGG TATATTTAGT TTTGGTAATT 11267
.......... .......... .......... .......... .......... .......... 280
TTGTGAACTG CACTCAGACG ACTTTGGTAT TCTTACTGTA ATTTTGTTTT GTTTTCCTAC 11327
.......... .......... .......... .......... .......... .......... 280
AGAGCGCTTG TGTGCTAAAG TTGAAGAGGT CTGATTTCTG AGCTGCCTTA AACTCA-GAA 11386
|||| | |||||||||| ||||||||| |||| || | | | | | || | |
..AGCGTGTA TGTGCTAAAG TTGAAGAGGC CTGA-GTC-G -CCCGACATC TCCTTATGTG 335
CGCAATTCCT ACAATTCTGG AAGTTTTG-T ATTAGCAGAA GTGTAATAAT GCTGTACACC 11445
| | | || |||| |||||||| | |||| || | || ||| | ||||
GTTCCTGCAA AAAACGCTGG AAGTTTTGTT GGTAGCCTAA AAGCAACAAT AC--TACAAG 393
AACGGAAGCT TCAGTTCTTG CTGACATAGG TGAAAGTATT AAACATGGAT GTTTGATGGT 11505
|| || | | | |||| |
AA-GGCATCG GTGACACCCA CTGAAGCTC. .......... .......... .........T 422
GTTAAAGACG TCATTTGAT- GCTAGACAAT AGTCCTTACA AACTTTGGT- TCTCT-GAGC 11562
||| | | | ||||| |||||||| | || |||||| | ||||||| | || |||
GTTTCTCGC- TGACTTGATA GCTAGACAGT GGTTCTTACA AGCTTTGGTG CCCCTGGAGG 481
AGAGTATTCT CAAAAAAAT- GCAGGGGCCT ATATTTTTTT TTGCCTCTTA TGCTGAATAT 11621
| | || | ||| | ||| |||| | ||||||| || |||
GTATTTTTTT TGGCGGAATA TTTGAGGCTC GTATTAGCTG CTGCCTCTAG TGACAGCTAT 541
GGATTAGGCT GATCATTTTA GATGAATATA AACGAGATCA GATGTACACA TTTATCATTC 11681
|| |||||| || || | || | | || ||||||| |||||| || || ||||
GGGTTAGGCA GA--ATGCT- CATATAAACC AA-GAGATCA GATGTATTCA ATTTCTATTC 597
TTTTATACGT GAAGGC-TTG TTTTAGCGAG GCTGGATGAT TGAGACCAGT TGTAATGACA 11740
|||| || ||||| ||| || | | ||| |||| ||| || | ||||| ||||||||||
TTTTGAACTC CAAGGCTTTG TTATGGTGAG TCTGGTCGAT TGGGGCCAGT TGTAATGACA 657
TG 11742
|
CG 659
********************************************************************************
EST sequence 108 -strand (File: 24768712-)
1 CAATTGAAAA TAGTTGGTGT TCAAGCATCA GGGGGGATTT TTGCTGGTGC TGTGCCCTCT
61 TTTGTTACGA CTCCCATAGA TACAATCAAG ACCAGGCTGC AGGTTATGGA TAATGAAAAT
121 AAGCCAAAAG CTGGGGAAGT TGTTAAAAGA TTGATCGCTG AAGATGGATG GAAAGGTTTG
181 TACAGAGGGT TGGGTCCAAG ATTTTTCAGC TCATCAGCTT GGGGTCCCTC AATGATAGTA
241 TGCTACGAGT ACCTGAAGCG CTTGTGTGCT AAAGTTGAAG AGGTCTGACT TCTGTTCTTA
301 CTATTCTGGA AGTTTTGTAT TAGAAGAAGT GAAATAATGC TGTATGTCGA CAACATTGAC
361 ACCACCGGAA GCTTCAGTTC TTGCTGACGT AGGTGAAAGC ATTCAACATG GATGTTTGAT
421 GGTGTACTTC ATTTGGTGCT AGACAATAGT CTTTACAAAC TTTGCTTCTC TGGGCTATAT
481 CTCAAAAAAT GTAGGGCCCT ATATTTTTTT GCTCATATGA TGAATATGGG TTTGGCGGAT
541 TATTTTAGGT GAGTATAAAC GATATCAGAT GTACACACTT CTCATTCTTT TATACATGAA
601 GGCTATTTTA GCGAGGCTGT ATGATTATGA CCAGTCTGGA TGATTGAGCC CAGTTGTAAT
661 GACACGGAAC GATGTTTCTG GGAGATGCTG TTTAAAAAAA AAAAAAAAAA ACACGAGGGG
721 GGGCCCGGTA CCC
Predicted gene structure (within gDNA segment 9393 to 12269):
Exon 1 9738 9839 ( 102 n); cDNA 1 102 ( 102 n); score: 0.941
Intron 1 9840 10515 ( 676 n); Pd: 0.994 (s: 0.96), Pa: 1.000 (s: 0.94)
Exon 2 10516 10669 ( 154 n); cDNA 103 256 ( 154 n); score: 0.961
Intron 2 10670 11329 ( 660 n); Pd: 0.961 (s: 0.96), Pa: 0.992 (s: 0.84)
Exon 3 11330 11738 ( 409 n); cDNA 257 643 ( 387 n); score: 0.792
PPA cDNA 694 713
MATCH 21326110+ 24768712- 0.854 665 0.907 C
PGS_21326110+_24768712- (9738 9839,10516 10669,11330 11738)
Alignment (genomic DNA sequence = upper lines):
CAATTGAAAC TAGTTGGTGT TCAAGCATCA GGGGGGGTTT TTGCCGGTGC CGTGACCTCT 9797
||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||| ||| |||||
CAATTGAAAA TAGTTGGTGT TCAAGCATCA GGGGGGATTT TTGCTGGTGC TGTGCCCTCT 60
TTTGTTACGA CTCCCATAGA TACAATAAAG ACCAGGCTGC AGGTACTGTG TGACATTCTG 9857
|||||||||| |||||||||| |||||| ||| |||||||||| ||
TTTGTTACGA CTCCCATAGA TACAATCAAG ACCAGGCTGC AG........ .......... 102
TTTGCTGATT ACTCTTGTAA TTTGATTTGT GTGGGTATAT TTTGTGAGGC TTACCCTTGT 9917
.......... .......... .......... .......... .......... .......... 102
GACTTAATGA TTCTTGTCTT TACATTTATG CTGCTCATTT GCAATAATTT GATTCCTTAT 9977
.......... .......... .......... .......... .......... .......... 102
CAATGCAATG CCACTAAGTT TAGGGGAATG GATATTTTGT TTTGGAAGTA TATTTGATGT 10037
.......... .......... .......... .......... .......... .......... 102
CAGACTTGAA GACCTAAATG TTCTTTTATA CTGATATTTC CTCCAATGGC GGGCTATTGA 10097
.......... .......... .......... .......... .......... .......... 102
GGTGCTGGAC TGGAATGCTG TCTATATTAA ACAATATATA CTTCTATGTT TACAGCTGTT 10157
.......... .......... .......... .......... .......... .......... 102
TGTTTTCTGC TGACATACCA TGACCAATTT GTCATGGTTT CAGTTATGAG GTCAGAAAAA 10217
.......... .......... .......... .......... .......... .......... 102
AAGAAACTTC CATTGGGAAA ACTTGATATC TATTACTTCA TTATTTATAG TGAGTAACAA 10277
.......... .......... .......... .......... .......... .......... 102
AAGTTAGCAC TTTCAAACTG ACTAAAGTAT GCCAGGGACG TATCATGCAT TTTACAACAT 10337
.......... .......... .......... .......... .......... .......... 102
GCTCCACATA TCTCCAAATA TCACATATTA CGCTTGTAGT GGTAAACTGA TAATACATCT 10397
.......... .......... .......... .......... .......... .......... 102
ACCAACACTG AAAGTTCTCA CAAGTCAGAA CCCTATATTT GACAGTTGTG GTCTCCCTCC 10457
.......... .......... .......... .......... .......... .......... 102
TTCCCTCTGC ATTTGTTGCT ACAGATGATT ACACTGAGTT TTGTTTCTTG TCATTTAGGT 10517
||
.......... .......... .......... .......... .......... ........GT 104
TATGGATAAT GAAAATAAGC CAAAAGCCAG GGAAGTTGTC AAAAGATTGA TTGCTGAAGA 10577
|||||||||| |||||||||| ||||||| | ||||||||| |||||||||| | ||||||||
TATGGATAAT GAAAATAAGC CAAAAGCTGG GGAAGTTGTT AAAAGATTGA TCGCTGAAGA 164
TGGATGGAAA GGTTTGTACA GAGGGTTGGG TCCAAGATTT TTCAGCTCAT CAGCTTGGGG 10637
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGGATGGAAA GGTTTGTACA GAGGGTTGGG TCCAAGATTT TTCAGCTCAT CAGCTTGGGG 224
AACCTCAATG ATAGTATGCT ACGAGTACCT GAGTATGTTT CGTCTTCCCT TGTCAAATGT 10697
|||||||| |||||||||| |||||||||| ||
TCCCTCAATG ATAGTATGCT ACGAGTACCT GA........ .......... .......... 256
ACACATGCAT ATGTAGTGTT ATATATCACT GCATCCCATG CAGGTTAATT TTAAGTACCC 10757
.......... .......... .......... .......... .......... .......... 256
AGATACTTCT TCTCATTTAG AATTTAGTTA AAATGACATC ATTCAGGTCA GTTGGCATCT 10817
.......... .......... .......... .......... .......... .......... 256
CCAGTACACT GCTTTTGTAA GTTGTATCAT AAATCCCATT TGCAATGAAA TTTTTGACTC 10877
.......... .......... .......... .......... .......... .......... 256
AAGTTGCAGC CTGTAACTTT TCTATATTTT TCGAATAAAG CTATCACCGT ACATGAAACC 10937
.......... .......... .......... .......... .......... .......... 256
TGCTTCTGTT AATGCCAAGG AGCGCACATT ATTTCCTGTA GACCGGCTTG GATGTTGAAC 10997
.......... .......... .......... .......... .......... .......... 256
AATTGGCACA TGCAAGTAGC AAAGAGCAGC CTTGTGCTTG CAACAATCTG GTCCACCTGT 11057
.......... .......... .......... .......... .......... .......... 256
GGATATGTTC GCTGTGAAAG AAACCAATTA GTCCTTGTAT GAAACATGGT ATTAGCGCTT 11117
.......... .......... .......... .......... .......... .......... 256
CATGAATAAA ACCACTGATT CTGATTTCTT ATTTTCAATG AATGGATGGG CATTACCAAA 11177
.......... .......... .......... .......... .......... .......... 256
GTTATCATGA TTAAAGATCT ATTTCATATA AGTTTATTTT TATACATTAG AGTTTATTTA 11237
.......... .......... .......... .......... .......... .......... 256
GAGAACAAGG TATATTTAGT TTTGGTAATT TTGTGAACTG CACTCAGACG ACTTTGGTAT 11297
.......... .......... .......... .......... .......... .......... 256
TCTTACTGTA ATTTTGTTTT GTTTTCCTAC AGAGCGCTTG TGTGCTAAAG TTGAAGAGGT 11357
|||||||| |||||||||| ||||||||||
.......... .......... .......... ..AGCGCTTG TGTGCTAAAG TTGAAGAGGT 284
CTGATTTCTG AGCTGCCTTA AACTCAGAAC GCAATTCCTA CAATTCTGGA AGTTTTGTAT 11417
|||| ||||| || | || || ||| | || | | | || ||| ||
CTGACTTCTG TTCTTAC-TA TTCT-GGAA- G---TT-TTG TATTAGAAGA AGTGAAATAA 337
TAGCAGAAGT GT-AATAATG CTGTACACCA ACGGAAGCTT CAGTTCTTGC TGACATAGGT 11476
| || | | | || | || || |||||| ||||||||| |||||||||| |||| |||||
T-GCTGTA-T GTCGACAACA TTG-ACACCA CCGGAAGCTT CAGTTCTTGC TGACGTAGGT 394
GAAAGTATTA AACATGGATG TTTGATGGTG TTAAAGACGT CATTTGATGC TAGACAATAG 11536
||||| ||| |||||||||| |||||||||| | || | |||||| ||| ||||||||||
GAAAGCATTC AACATGGATG TTTGATGGTG -T----ACTT CATTTGGTGC TAGACAATAG 449
TCCTTACAAA CTTTGGTTCT CTGAGCAGAG TATTCTCAAA AAAATGCAGG GGCCTATATT 11596
|| ||||||| ||||| |||| ||| || | || |||| || |||||| ||| | ||||||
TCTTTACAAA CTTTGCTTCT CTGGGC-TA- TA-TCTC-AA AAAATGTAGG GCCCTATA-- 503
TTTTTTTGCC TCTTATGCTG AATATGGATT AGGCTGATCA TTTTAGATGA ATATAAACGA 11656
|||||||| | || |||| || ||||||| || ||| ||| | |||||| ||| |||||||||
TTTTTTTG-C TCATATGATG AATATGGGTT TGGCGGATTA TTTTAGGTGA GTATAAACGA 562
GATCAGATGT ACACATTTAT CATTCTTTTA TACGTGAAGG CTTGTTTTAG CGAGGCTGGA 11716
||||||||| ||||| || | |||||||||| ||| |||||| | | |||||| |||||||| |
TATCAGATGT ACACACTTCT CATTCTTTTA TACATGAAGG C-TATTTTAG CGAGGCTGTA 621
TGATTGAGAC CAGTTGTAAT GA 11738
||||| ||| |||| || ||
TGATTATGAC CAGTCTGGAT GA 643
********************************************************************************
EST sequence 102 -strand (File: 5058681-)
1 CCAGGCTGCA GGTTATGGAT AATGAAAATA AGCCAAAAGC TGGGGAAGTT GTTAAAAGAT
61 TGATTGCTGA AGATGGATGG AAAGGTTTGT ACAGAGGGTT GGGTCCAAGA TTTTTCAGCT
121 CATCAGCTTG GGGTACCTCA ATGATAGTAT GCTACAAGTA CCTGAAGCGC TTGTGTGCTA
181 AAGTTGAAGA GGTCTGACTT CTGTTCTTAC TATCCTGGAA GTTTTGTATT AGCAGAAGTG
241 AAATAATGCT GTATGTCGCC AACATTGACC CCCCCGGAAG CTTCAGTTCT TGCTGACGTA
301 GGTGAAAGCA TTCAACATGG ATGTTTGATG GTGTACTTCA TTTGATGCTA GCCAATAGTC
361 TTTACAAACT TTGCTTCTCT GGGCTATATT CTCAAAAAAA TGGAGGGGCC TATATTTTTT
421 TGCTCATATG ATGAATATGG GTTAGGCGGA TTATTTTAGG TGAGTATAAA CGATATCAGA
481 TGTACACACT TCTCATTCTT TTATACATGA AGGCTGTTTT AGCGAGGCTG TATGATTATG
541 ACCAGTCTGG ATGATTGAGA CCAGTTGTAA TGACACGGAA CGATGTTTCC CGGGAGATGC
601 TGTTTTGCCC TTTTTTTTTC CCTCCATGCG GT
Predicted gene structure (within gDNA segment 10164 to 12196):
Exon 1 10516 10669 ( 154 n); cDNA 12 165 ( 154 n); score: 0.968
Intron 1 10670 11329 ( 660 n); Pd: 0.961 (s: 0.96), Pa: 0.992 (s: 0.84)
Exon 2 11330 11738 ( 409 n); cDNA 166 554 ( 389 n); score: 0.800
MATCH 21326110+ 5058681- 0.845 563 0.891 C
PGS_21326110+_5058681- (10516 10669,11330 11738)
Alignment (genomic DNA sequence = upper lines):
GTTATGGATA ATGAAAATAA GCCAAAAGCC AGGGAAGTTG TCAAAAGATT GATTGCTGAA 10575
|||||||||| |||||||||| ||||||||| ||||||||| | |||||||| ||||||||||
GTTATGGATA ATGAAAATAA GCCAAAAGCT GGGGAAGTTG TTAAAAGATT GATTGCTGAA 71
GATGGATGGA AAGGTTTGTA CAGAGGGTTG GGTCCAAGAT TTTTCAGCTC ATCAGCTTGG 10635
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATGGATGGA AAGGTTTGTA CAGAGGGTTG GGTCCAAGAT TTTTCAGCTC ATCAGCTTGG 131
GGAACCTCAA TGATAGTATG CTACGAGTAC CTGAGTATGT TTCGTCTTCC CTTGTCAAAT 10695
|| ||||||| |||||||||| |||| ||||| ||||
GGTACCTCAA TGATAGTATG CTACAAGTAC CTGA...... .......... .......... 165
GTACACATGC ATATGTAGTG TTATATATCA CTGCATCCCA TGCAGGTTAA TTTTAAGTAC 10755
.......... .......... .......... .......... .......... .......... 165
CCAGATACTT CTTCTCATTT AGAATTTAGT TAAAATGACA TCATTCAGGT CAGTTGGCAT 10815
.......... .......... .......... .......... .......... .......... 165
CTCCAGTACA CTGCTTTTGT AAGTTGTATC ATAAATCCCA TTTGCAATGA AATTTTTGAC 10875
.......... .......... .......... .......... .......... .......... 165
TCAAGTTGCA GCCTGTAACT TTTCTATATT TTTCGAATAA AGCTATCACC GTACATGAAA 10935
.......... .......... .......... .......... .......... .......... 165
CCTGCTTCTG TTAATGCCAA GGAGCGCACA TTATTTCCTG TAGACCGGCT TGGATGTTGA 10995
.......... .......... .......... .......... .......... .......... 165
ACAATTGGCA CATGCAAGTA GCAAAGAGCA GCCTTGTGCT TGCAACAATC TGGTCCACCT 11055
.......... .......... .......... .......... .......... .......... 165
GTGGATATGT TCGCTGTGAA AGAAACCAAT TAGTCCTTGT ATGAAACATG GTATTAGCGC 11115
.......... .......... .......... .......... .......... .......... 165
TTCATGAATA AAACCACTGA TTCTGATTTC TTATTTTCAA TGAATGGATG GGCATTACCA 11175
.......... .......... .......... .......... .......... .......... 165
AAGTTATCAT GATTAAAGAT CTATTTCATA TAAGTTTATT TTTATACATT AGAGTTTATT 11235
.......... .......... .......... .......... .......... .......... 165
TAGAGAACAA GGTATATTTA GTTTTGGTAA TTTTGTGAAC TGCACTCAGA CGACTTTGGT 11295
.......... .......... .......... .......... .......... .......... 165
ATTCTTACTG TAATTTTGTT TTGTTTTCCT ACAGAGCGCT TGTGTGCTAA AGTTGAAGAG 11355
|||||| |||||||||| ||||||||||
.......... .......... .......... ....AGCGCT TGTGTGCTAA AGTTGAAGAG 191
GTCTGATTTC TGAGCTGCCT TAAACTCAGA ACGCAATTCC TACAATTCTG GAAGTTTTGT 11415
|||||| ||| || || | || || || | | || || | | ||||| |
GTCTGACTTC TGTTCTTAC- TATCCT-GGA A-G--TTTTG TATTA-GC-A GAAGTGAAAT 244
ATTAGCAGAA GTGTAATAAT GCTGTACACC AACGGAAGCT TCAGTTCTTG CTGACATAGG 11475
| | || | | ||| | | || || |||||||| |||||||||| ||||| ||||
AAT-GCTGTA -TGTCGCCAA CATTGACCCC CCCGGAAGCT TCAGTTCTTG CTGACGTAGG 302
TGAAAGTATT AAACATGGAT GTTTGATGGT GTTAAAGACG TCATTTGATG CTAGACAATA 11535
|||||| ||| ||||||||| |||||||||| | | || |||||||||| |||| |||||
TGAAAGCATT CAACATGGAT GTTTGATGGT G-T----ACT TCATTTGATG CTAGCCAATA 357
GTCCTTACAA ACTTTGGTTC TCTGAGCAGA GTATTCTCAA AAAAATGCAG GGGCCTATAT 11595
||| |||||| |||||| ||| |||| || | ||||||||| ||||||| || |||||||||
GTCTTTACAA ACTTTGCTTC TCTGGGC-TA -TATTCTCAA AAAAATGGAG GGGCCTATA- 414
TTTTTTTTGC CTCTTATGCT GAATATGGAT TAGGCTGATC ATTTTAGATG AATATAAACG 11655
|||||||| ||| |||| | |||||||| | ||||| ||| ||||||| || | ||||||||
-TTTTTTTG- CTCATATGAT GAATATGGGT TAGGCGGATT ATTTTAGGTG AGTATAAACG 472
AGATCAGATG TACACATTTA TCATTCTTTT ATACGTGAAG GCTTGTTTTA GCGAGGCTGG 11715
| |||||||| |||||| || |||||||||| |||| ||||| || ||||||| |||||||||
ATATCAGATG TACACACTTC TCATTCTTTT ATACATGAAG GC-TGTTTTA GCGAGGCTGT 531
ATGATTGAGA CCAGTTGTAA TGA 11738
|||||| || ||||| | |||
ATGATTATGA CCAGTCTGGA TGA 554
********************************************************************************
EST sequence 27 +strand (File: 4381116+)
1 GCACGAGGGT GGGCAAGTTA TGGTTCGAGC CAGCGCTTCA TATGGAGCAA GCTCTTGGAT
61 AATGGAACTG AGCATGGTGG GCCTGCTCCC AGCCAGGGGA AAATAGTGTC AGTTCAAGCT
121 GCTGGTGGGA TCATCGCCGG TGCTACTGCA TCTTGCATAA CAACTCCATT GGACACCATT
181 AAAACTAGGT TGCAGGTGAT GGGACACGAT AAGAGACCTA GTGCAGGGCA AGTAGTTAAG
241 CAGCTAATTG CTGAAGATGG TTGGACAGGA TTTTACAGGG GATTAGGTCC AAGATTTGTC
301 AGCATGTCAG CGTGGGGAAC CTCCATGATA CTTGCCTATG AATATCTCAA GCGCTTGTGT
361 GCAGTAAACG AATAGATTGA TGAAAGCTAG CTGCCAGACG ACTCTTGCGG
Predicted gene structure (within gDNA segment 8671 to 11887):
Exon 1 9729 9839 ( 111 n); cDNA 85 195 ( 111 n); score: 0.667
Intron 1 9840 10515 ( 676 n); Pd: 0.994 (s: 0.64), Pa: 1.000 (s: 0.56)
Exon 2 10516 10669 ( 154 n); cDNA 196 349 ( 154 n); score: 0.714
Intron 2 10670 11329 ( 660 n); Pd: 0.961 (s: 0.74), Pa: 0.992 (s: 0)
Exon 3 11330 11355 ( 26 n); cDNA 350 375 ( 26 n); score: 0.731
MATCH 21326110+ 4381116+ 0.694 291 0.710 C
PGS_21326110+_4381116+ (9729 9839,10516 10669,11330 11355)
Alignment (genomic DNA sequence = upper lines):
GCTCCTAGCC AATTGAAACT AGTTGGTGTT CAAGCATCAG GGGGGGTTTT TGCCGGTGCC 9788
||||| |||| | |||| | ||| ||| ||||| | | | ||| | | ||||||||
GCTCCCAGCC AGGGGAAAAT AGTGTCAGTT CAAGCTGCTG GTGGGATCAT CGCCGGTGCT 144
GTGACCTCTT TTGTTACGAC TCCCATAGAT ACAATAAAGA CCAGGCTGCA GGTACTGTGT 9848
| |||| | || || ||| | || || || || | | ||| |||| |
ACTGCATCTT GCATAACAAC TCCATTGGAC ACCATTAAAA CTAGGTTGCA G......... 195
GACATTCTGT TTGCTGATTA CTCTTGTAAT TTGATTTGTG TGGGTATATT TTGTGAGGCT 9908
.......... .......... .......... .......... .......... .......... 195
TACCCTTGTG ACTTAATGAT TCTTGTCTTT ACATTTATGC TGCTCATTTG CAATAATTTG 9968
.......... .......... .......... .......... .......... .......... 195
ATTCCTTATC AATGCAATGC CACTAAGTTT AGGGGAATGG ATATTTTGTT TTGGAAGTAT 10028
.......... .......... .......... .......... .......... .......... 195
ATTTGATGTC AGACTTGAAG ACCTAAATGT TCTTTTATAC TGATATTTCC TCCAATGGCG 10088
.......... .......... .......... .......... .......... .......... 195
GGCTATTGAG GTGCTGGACT GGAATGCTGT CTATATTAAA CAATATATAC TTCTATGTTT 10148
.......... .......... .......... .......... .......... .......... 195
ACAGCTGTTT GTTTTCTGCT GACATACCAT GACCAATTTG TCATGGTTTC AGTTATGAGG 10208
.......... .......... .......... .......... .......... .......... 195
TCAGAAAAAA AGAAACTTCC ATTGGGAAAA CTTGATATCT ATTACTTCAT TATTTATAGT 10268
.......... .......... .......... .......... .......... .......... 195
GAGTAACAAA AGTTAGCACT TTCAAACTGA CTAAAGTATG CCAGGGACGT ATCATGCATT 10328
.......... .......... .......... .......... .......... .......... 195
TTACAACATG CTCCACATAT CTCCAAATAT CACATATTAC GCTTGTAGTG GTAAACTGAT 10388
.......... .......... .......... .......... .......... .......... 195
AATACATCTA CCAACACTGA AAGTTCTCAC AAGTCAGAAC CCTATATTTG ACAGTTGTGG 10448
.......... .......... .......... .......... .......... .......... 195
TCTCCCTCCT TCCCTCTGCA TTTGTTGCTA CAGATGATTA CACTGAGTTT TGTTTCTTGT 10508
.......... .......... .......... .......... .......... .......... 195
CATTTAGGTT ATGGATAATG AAAATAAGCC AAAAGCCAGG GAAGTTGTCA AAAGATTGAT 10568
|| |||| | | | || | || | || || |||| || | | | ||
.......GTG ATGGGACACG ATAAGAGACC TAGTGCAGGG CAAGTAGTTA AGCAGCTAAT 248
TGCTGAAGAT GGATGGAAAG GTTTGTACAG AGGGTTGGGT CCAAGATTTT TCAGCTCATC 10628
|||||||||| || |||| || | || ||||| || || ||| ||||||||| ||||| ||
TGCTGAAGAT GGTTGGACAG GATTTTACAG GGGATTAGGT CCAAGATTTG TCAGCATGTC 308
AGCTTGGGGA ACCTCAATGA TAGTATGCTA CGAGTACCTG AGTATGTTTC GTCTTCCCTT 10688
||| |||||| ||||| |||| || | ||| || || || |
AGCGTGGGGA ACCTCCATGA TACTTGCCTA TGAATATCTC A......... .......... 349
GTCAAATGTA CACATGCATA TGTAGTGTTA TATATCACTG CATCCCATGC AGGTTAATTT 10748
.......... .......... .......... .......... .......... .......... 349
TAAGTACCCA GATACTTCTT CTCATTTAGA ATTTAGTTAA AATGACATCA TTCAGGTCAG 10808
.......... .......... .......... .......... .......... .......... 349
TTGGCATCTC CAGTACACTG CTTTTGTAAG TTGTATCATA AATCCCATTT GCAATGAAAT 10868
.......... .......... .......... .......... .......... .......... 349
TTTTGACTCA AGTTGCAGCC TGTAACTTTT CTATATTTTT CGAATAAAGC TATCACCGTA 10928
.......... .......... .......... .......... .......... .......... 349
CATGAAACCT GCTTCTGTTA ATGCCAAGGA GCGCACATTA TTTCCTGTAG ACCGGCTTGG 10988
.......... .......... .......... .......... .......... .......... 349
ATGTTGAACA ATTGGCACAT GCAAGTAGCA AAGAGCAGCC TTGTGCTTGC AACAATCTGG 11048
.......... .......... .......... .......... .......... .......... 349
TCCACCTGTG GATATGTTCG CTGTGAAAGA AACCAATTAG TCCTTGTATG AAACATGGTA 11108
.......... .......... .......... .......... .......... .......... 349
TTAGCGCTTC ATGAATAAAA CCACTGATTC TGATTTCTTA TTTTCAATGA ATGGATGGGC 11168
.......... .......... .......... .......... .......... .......... 349
ATTACCAAAG TTATCATGAT TAAAGATCTA TTTCATATAA GTTTATTTTT ATACATTAGA 11228
.......... .......... .......... .......... .......... .......... 349
GTTTATTTAG AGAACAAGGT ATATTTAGTT TTGGTAATTT TGTGAACTGC ACTCAGACGA 11288
.......... .......... .......... .......... .......... .......... 349
CTTTGGTATT CTTACTGTAA TTTTGTTTTG TTTTCCTACA GAGCGCTTGT GTGCTAAAGT 11348
||||||||| |||| |
.......... .......... .......... .......... .AGCGCTTGT GTGCAGTAAA 368
TGAAGAG 11355
||| ||
CGAATAG 375
********************************************************************************
EST sequence 23 +strand (File: 15853351+)
1 TACCTCAATG ATAGTATGCT ATGAATACCT TAAGCGCTTG TGTGTCTAAA TTGAAGAGGT
61 CTGAGTCNAG CTTANAACCT ATCNCTCTGA TGCTCCCCAA TGGTGGAAAT TTTGTACCCT
121 AAAATCCCAT AATGCTGTAT GCCCACACAC TGTGACCCCT GAGGAAGCTC TCTTTCTTGC
181 TGACTTGATA CTAGATATCT TTAAAATTTT AGTGCTCTTG AGGCTATTTT GAAAATGCCG
241 AGGTTCATAT TGTTTGCCTC TAACGATGAA TATGGATTAG GCAGAATGTT TTACATGATA
301 TATAAACGAA AGATTAGATA TGTTCACTTT TCATTCTTTT TAGCTCCAGC CTCCACGGGC
361 TTGTAATAGT GAGACCGGAG TATTGGAACC GGTTTCANGT GAGGAGGAGC CCAGGATATA
421 TATACCTTTG CTCGTTTCTC TTCGATGTAC TCCAAATATC CTTCTTCGAA TTTTTTTACG
481 ATGGTGCTGG TCTTCGTTTT GTATCCATAA TCCTTCGTAG CGAAATTATT TTCCAAAAAA
541 AAAAAAAAAA AAAA
Predicted gene structure (within gDNA segment 10334 to 13295):
Exon 1 10638 10669 ( 32 n); cDNA 1 32 ( 32 n); score: 0.875
Intron 1 10670 11329 ( 660 n); Pd: 0.961 (s: 0), Pa: 0.992 (s: 0.68)
Exon 2 11330 11474 ( 145 n); cDNA 33 170 ( 138 n); score: 0.572
Intron 2 11475 11504 ( 30 n); Pd: 0.443 (s: 0.50), Pa: 0.000 (s: 0.62) ??
Exon 3 11505 11699 ( 195 n); cDNA 171 353 ( 183 n); score: 0.662
PPA cDNA 535 554
MATCH 21326110+ 15853351+ 0.624 372 0.671 C
PGS_21326110+_15853351+ (10638 10669,11330 11474,11505 11699)
Alignment (genomic DNA sequence = upper lines):
AACCTCAATG ATAGTATGCT ACGAGTACCT GAGTATGTTT CGTCTTCCCT TGTCAAATGT 10697
||||||||| |||||||||| | || ||||| |
TACCTCAATG ATAGTATGCT ATGAATACCT TA........ .......... .......... 32
ACACATGCAT ATGTAGTGTT ATATATCACT GCATCCCATG CAGGTTAATT TTAAGTACCC 10757
.......... .......... .......... .......... .......... .......... 32
AGATACTTCT TCTCATTTAG AATTTAGTTA AAATGACATC ATTCAGGTCA GTTGGCATCT 10817
.......... .......... .......... .......... .......... .......... 32
CCAGTACACT GCTTTTGTAA GTTGTATCAT AAATCCCATT TGCAATGAAA TTTTTGACTC 10877
.......... .......... .......... .......... .......... .......... 32
AAGTTGCAGC CTGTAACTTT TCTATATTTT TCGAATAAAG CTATCACCGT ACATGAAACC 10937
.......... .......... .......... .......... .......... .......... 32
TGCTTCTGTT AATGCCAAGG AGCGCACATT ATTTCCTGTA GACCGGCTTG GATGTTGAAC 10997
.......... .......... .......... .......... .......... .......... 32
AATTGGCACA TGCAAGTAGC AAAGAGCAGC CTTGTGCTTG CAACAATCTG GTCCACCTGT 11057
.......... .......... .......... .......... .......... .......... 32
GGATATGTTC GCTGTGAAAG AAACCAATTA GTCCTTGTAT GAAACATGGT ATTAGCGCTT 11117
.......... .......... .......... .......... .......... .......... 32
CATGAATAAA ACCACTGATT CTGATTTCTT ATTTTCAATG AATGGATGGG CATTACCAAA 11177
.......... .......... .......... .......... .......... .......... 32
GTTATCATGA TTAAAGATCT ATTTCATATA AGTTTATTTT TATACATTAG AGTTTATTTA 11237
.......... .......... .......... .......... .......... .......... 32
GAGAACAAGG TATATTTAGT TTTGGTAATT TTGTGAACTG CACTCAGACG ACTTTGGTAT 11297
.......... .......... .......... .......... .......... .......... 32
TCTTACTGTA ATTTTGTTTT GTTTTCCTAC AGAGCGCTTG TGTGCTAAAG TTGAAGAGGT 11357
|||||||| |||| || ||||||||||
.......... .......... .......... ..AGCGCTTG TGTGTCTAAA TTGAAGAGGT 60
CTGATTTCTG AGCTGCCTTA AACTCAGAAC GCAATTCCTA CAATTCTGGA AGTTTTGTAT 11417
|||| || |||| || | ||| |||| |||| | |||||||
CTGA-GTC-N AGCTTANAAC CTATCNCTCT GATGCTCCC- CAATGGTGGA AATTTTGTA- 116
TAGCAGAAGT GTAATAATGC TGTACACCAA CGGAAGCTTC AGTTCTTGCT GACATAGGTG 11477
| || | ||||||| |||| || | | | || | || ||
-CCCTAAAAT CCCATAATGC TGTATGCCCA C--ACACTGT GACCCCTGAG GAAGCTC... 170
AAAGTATTAA ACATGGATGT TTGATGGTGT TAAAGACGTC ATTTGATGCT AGACAATAGT 11537
| | | | | | ||||| || || ||| |
.......... .......... .......TCT TTCTTGC-TG ACTTGATACT AG---ATA-T 198
CCTTACAAAC TTTGGTTCTC TGAGCAGAGT ATTCTCAAAA AAATGCAGGG GCCTATATTT 11597
| ||| ||| ||| || ||| | | || | ||| | | |||||| | | | | | |
CTTTA-AAAT TTTAGTGCTC T-TG-AGGCT ATT-T--TGA AAATGCCGAG G--T-TCATA 249
TTTTTTGCCT CTTATGCTGA ATATGGATTA GGCTGATCAT TTTAGATGA- ATATAAACG- 11655
|| ||||||| || | | ||| |||||||||| ||| || | |||| |||| |||||||||
TTGTTTGCCT CTAACGATGA ATATGGATTA GGCAGAATGT TTTACATGAT ATATAAACGA 309
-AGATCAGAT GTACACATTT ATCATTCTTT TATACGTGAA GGCTT 11699
|||| |||| | || || ||||||||| | || | | | ||
AAGATTAGAT ATGTTCACTT TTCATTCTTT T-TAGCTCCA GCCTC 353
********************************************************************************
EST sequence 104 -strand (File: 4730326-)
1 GCACGAGCTC CCCTGTCAAA TAAAATTCGC GTTCCTTGTA TTGAGGAAAG CGTTCAACAT
61 GGATGTTTGA TGGTGTACTT CATTTGATGC TAGACAATAG TCTTTACAAA CTTTGCTTCT
121 CTGGGCTATA TTCTCAAAAA AATGGAGGGG CCTATATTTT TTTGCTCATA TGATGAATAT
181 GGGTTAGGCG GATTATTTTA GGTGAGTATA AACGATATCA GATGTACACA CTTCTCATTC
241 TTTTATACAT GAAGGCTGTT TTAGCGAGGC TGTATGATTA TGACCAGTCT GGATGATTGA
301 GACCAGTTGT AATGACACGG AACGATGTTT CCGGGAGATG CTGTTTTGAC CTTTTTTTTT
361 TCCTCATGCG GTTTCAGTTA AAAAAAAAAA AAAAAAAACT
Predicted gene structure (within gDNA segment 10907 to 12214):
Exon 1 11475 11738 ( 264 n); cDNA 45 296 ( 252 n); score: 0.852
PPA cDNA 380 399
MATCH 21326110+ 4730326- 0.852 264 0.660 C
PGS_21326110+_4730326- (11475 11738)
Alignment (genomic DNA sequence = upper lines):
GTGAAAGTAT TAAACATGGA TGTTTGATGG TGTTAAAGAC GTCATTTGAT GCTAGACAAT 11534
| ||||| | | |||||||| |||||||||| || | | | ||||||||| ||||||||||
G-GAAAGCGT TCAACATGGA TGTTTGATGG TG-T--A--C TTCATTTGAT GCTAGACAAT 98
AGTCCTTACA AACTTTGGTT CTCTGAGCAG AGTATTCTCA AAAAAATGCA GGGGCCTATA 11594
|||| ||||| ||||||| || ||||| || | |||||||| |||||||| | ||||||||||
AGTCTTTACA AACTTTGCTT CTCTGGGCT- A-TATTCTCA AAAAAATGGA GGGGCCTATA 156
TTTTTTTTTG CCTCTTATGC TGAATATGGA TTAGGCTGAT CATTTTAGAT GAATATAAAC 11654
|||||||| ||| |||| ||||||||| |||||| ||| ||||||| | || |||||||
--TTTTTTTG -CTCATATGA TGAATATGGG TTAGGCGGAT TATTTTAGGT GAGTATAAAC 213
GAGATCAGAT GTACACATTT ATCATTCTTT TATACGTGAA GGCTTGTTTT AGCGAGGCTG 11714
|| ||||||| ||||||| || ||||||||| ||||| |||| ||| |||||| ||||||||||
GATATCAGAT GTACACACTT CTCATTCTTT TATACATGAA GGC-TGTTTT AGCGAGGCTG 272
GATGATTGAG ACCAGTTGTA ATGA 11738
|||||| | |||||| ||||
TATGATTATG ACCAGTCTGG ATGA 296
********************************************************************************
EST sequence 103 -strand (File: 13557988-)
1 GATGGTGTAC TTCATTTGAT GCTAGACAAT AGTCTTTACA AACTTTGCTT CTCTGGGCTA
61 TATTCTCAAA AAAATGGAGG GGCCTATATT TTTTTGCTCA TATGATGAAT ATGGGTTAGG
121 C
Predicted gene structure (within gDNA segment 11156 to 12031):
Exon 1 11503 11630 ( 128 n); cDNA 1 121 ( 121 n); score: 0.844
MATCH 21326110+ 13557988- 0.844 128 1.058 C
PGS_21326110+_13557988- (11503 11630)
Alignment (genomic DNA sequence = upper lines):
GGTGTTAAAG ACGTCATTTG ATGCTAGACA ATAGTCCTTA CAAACTTTGG TTCTCTGAGC 11562
| || | || ||||||| |||||||||| |||||| ||| ||||||||| ||||||| ||
GATGGT--GT ACTTCATTTG ATGCTAGACA ATAGTCTTTA CAAACTTTGC TTCTCTGGGC 58
AGAGTATTCT CAAAAAAATG CAGGGGCCTA TATTTTTTTT TGCCTCTTAT GCTGAATATG 11622
| |||||| |||||||||| ||||||||| || |||||| || ||| ||| | ||||||||
-TA-TATTCT CAAAAAAATG GAGGGGCCTA TA--TTTTTT TG-CTCATAT GATGAATATG 113
GATTAGGC 11630
| ||||||
GGTTAGGC 121
********************************************************************************
EST sequence 61 +strand (File: 13585839+)
1 GCACGAGGCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA
61 GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA
121 GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG
181 TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC
241 CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAGG GCCTCGCGGC
301 GGAGGGCGGA GGAGGAGCCG CTTCCGCATT CGACTCCGCC GGGTTCGGTG GGGCGGTGCA
361 GCCGCTCGGC TCCAGTGCCG TGGATTTCAG TATGCAGGAT GTCAAGGGCT CATCCAAGAG
421 CTTCCCCAAG CACGAGGCGA AGCATGTCTC TGACCATAAG AACGCTGCCC GG
Predicted gene structure (within gDNA segment 12020 to 13513):
Exon 1 12352 12640 ( 289 n); cDNA 1 289 ( 289 n); score: 0.983
Intron 1 12641 12722 ( 82 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 2 12723 12823 ( 101 n); cDNA 290 390 ( 101 n); score: 1.000
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 3 12921 12990 ( 70 n); cDNA 391 460 ( 70 n); score: 1.000
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 1.00), Pa: 0.978 (s: 0)
Exon 4 13197 13208 ( 12 n); cDNA 461 472 ( 12 n); score: 1.000
MATCH 21326110+ 13585839+ 0.989 472 1.000 C
PGS_21326110+_13585839+ (12352 12640,12723 12823,12921 12990,13197 13208)
Alignment (genomic DNA sequence = upper lines):
TTGCTAGTCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA 12411
| || || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCACGAGGCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA 60
GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA 12471
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA 120
GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG 12531
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG 180
TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC 12591
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC 240
CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAGG TCCCCCCACT 12651
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||
CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAG. .......... 289
TTCCCCTTCC TCCGGCAGTC TGGCCTAGGA TTTGTTCTGC ACGGGCCTAA ACCCTCACTG 12711
.......... .......... .......... .......... .......... .......... 289
TTGGTTCGCA GGGCCTCGCG GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG 12771
||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .GGCCTCGCG GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG 338
CCGGGTTCGG TGGGGCGGTG CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AGGTAAACCC 12831
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||
CCGGGTTCGG TGGGGCGGTG CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AG........ 390
CAACCTTGCG CCCCCGCGGT GTTGCCTAGT GGCAGTGTTT TTTCTGGTGC TGAACATTGG 12891
.......... .......... .......... .......... .......... .......... 390
TGAGGAGTGT TGACGCCGGT GCTGTGTAGT ATGCAGGATG TCAAGGGCTC ATCCAAGAGC 12951
| |||||||||| |||||||||| ||||||||||
.......... .......... .........T ATGCAGGATG TCAAGGGCTC ATCCAAGAGC 421
TTCCCCAAGC ACGAGGCGAA GCATGTCTCT GACCATAAGG TGCTTATGAT TCCAATTTTC 13011
|||||||||| |||||||||| |||||||||| |||||||||
TTCCCCAAGC ACGAGGCGAA GCATGTCTCT GACCATAAG. .......... .......... 460
CCTTGCAAAT GCACCACTTG AAAGTTGAAA CAATTTTTGT GTCAGACTCC TGTTTATCTG 13071
.......... .......... .......... .......... .......... .......... 460
AATATTTACT ACTGCTATTG CACATTTTGC ACTTATCACA GTACCATGAT TATGTAGACA 13131
.......... .......... .......... .......... .......... .......... 460
ACTTGGGATT GACCAACAAT AGATTTTACT GATGTTTATT GGCTTACCAT TGCATTTTTC 13191
.......... .......... .......... .......... .......... .......... 460
TGTAGAACGC TGCCCGG 13208
||||| |||||||
.....AACGC TGCCCGG 472
********************************************************************************
EST sequence 62 +strand (File: 13585840+)
1 GCACGAGGCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA
61 GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA
121 GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG
181 TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC
241 CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAGG GCCTCGCGGC
301 GGAGGGCGGA GGAGGAGCCG CTTCCGCATT CGACTCCGCC GGGTTCGGTG GGGCGGTGCA
361 GCCGCTCGGC TCCAGTGCCG TGGATTTCAG TATGCAGGAT GTCAAGGGCT CATCCAAGAG
421 CTTCCCCAAG CACGAGGCGA AGCATGTCTC TGACCATAAG AACG
Predicted gene structure (within gDNA segment 12020 to 13315):
Exon 1 12352 12640 ( 289 n); cDNA 1 289 ( 289 n); score: 0.983
Intron 1 12641 12722 ( 82 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 2 12723 12823 ( 101 n); cDNA 290 390 ( 101 n); score: 1.000
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 3 12921 12990 ( 70 n); cDNA 391 460 ( 70 n); score: 1.000
MATCH 21326110+ 13585840+ 0.989 460 0.991 C
PGS_21326110+_13585840+ (12352 12640,12723 12823,12921 12990)
Alignment (genomic DNA sequence = upper lines):
TTGCTAGTCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA 12411
| || || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCACGAGGCT TCTTCAGCTT CAGTCCAGTC ACAACTGAAT CCGCCGCGCA AGGCATCCAA 60
GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA 12471
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGATTTGTTC GTCCTTCGGA GGGTGGGGAA TCGAAGCGAC GAAAACGAAG CAATGAACGA 120
GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG 12531
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCGGTGCAG GAGGCGAAGC TGCTGCGGCA GGTGAACGCG CTCATCGTGG CGCACCTCCG 180
TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC 12591
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TAGCCAGAAC CTCGGGCAGG CCGCAGCCGC CGTCGCCGCC GCCACCATGA CCCCCATCTC 240
CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAGG TCCCCCCACT 12651
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||
CGCCGCCGAA TCCGTCCCCG CAAATCAACT CCTACGTCTC GTGGCCAAG. .......... 289
TTCCCCTTCC TCCGGCAGTC TGGCCTAGGA TTTGTTCTGC ACGGGCCTAA ACCCTCACTG 12711
.......... .......... .......... .......... .......... .......... 289
TTGGTTCGCA GGGCCTCGCG GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG 12771
||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .GGCCTCGCG GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG 338
CCGGGTTCGG TGGGGCGGTG CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AGGTAAACCC 12831
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||
CCGGGTTCGG TGGGGCGGTG CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AG........ 390
CAACCTTGCG CCCCCGCGGT GTTGCCTAGT GGCAGTGTTT TTTCTGGTGC TGAACATTGG 12891
.......... .......... .......... .......... .......... .......... 390
TGAGGAGTGT TGACGCCGGT GCTGTGTAGT ATGCAGGATG TCAAGGGCTC ATCCAAGAGC 12951
| |||||||||| |||||||||| ||||||||||
.......... .......... .........T ATGCAGGATG TCAAGGGCTC ATCCAAGAGC 421
TTCCCCAAGC ACGAGGCGAA GCATGTCTCT GACCATAAG 12990
|||||||||| |||||||||| |||||||||| |||||||||
TTCCCCAAGC ACGAGGCGAA GCATGTCTCT GACCATAAG 460
********************************************************************************
EST sequence 8 +strand (File: 18965012+)
1 ACGGGATAGT GTAGTAGCAA GCATAGGAGT TTTGCTGTCT TCTTCAGCTT CAGTAGTTCA
61 GTCCAATCAC AGATCGCAGT ACAACCGAAC CCGCCGCACA AGGCATCCAA GGATTTGTTC
121 GGCCTTCGGA CTTCGGAGGG TAGGGAATCG AAGCCACGAG AAGTCGAGAA CAAAGCAATG
181 AACGAGGCGG TGCAGGAGGC GAAGCTGCTG CGGCAGGTGA ACGCGCTCAT CGTGGCACAC
241 CTCCGTAGCC AGAACCTCGG GCAGGCCGCA GCTGCCGTCG CCGCCGCCAC CATGACCCCC
301 ATCTCCGCTG CCGAATCCGT CCCCGCCAAT CACCTCCTGC GTCTCGTGGC CAAGGGCCTC
361 GCCGCGGAGC ACGGAGGAGG TGACGCCGCT TCCGCATTCG ACTCCGCCGG GTTCGGTGTG
421 GCGGTGCAGC CGCCCGGCTC CAGTGCCGTG GATTTCAGTA TTCAGGATGT CAAGGGCTCA
481 TCCAAAAGCT TCCCCAAGCA CGAGGCGAAG CATGTCTCTG ACCATAAGAA CGCTGCCCG
Predicted gene structure (within gDNA segment 11878 to 13512):
Exon 1 12380 12640 ( 261 n); cDNA 80 354 ( 275 n); score: 0.835
Intron 1 12641 12722 ( 82 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.81)
Exon 2 12723 12823 ( 101 n); cDNA 355 458 ( 104 n); score: 0.891
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.96), Pa: 0.000 (s: 0.96)
Exon 3 12921 12990 ( 70 n); cDNA 459 528 ( 70 n); score: 0.971
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.98), Pa: 0.978 (s: 0)
Exon 4 13197 13207 ( 11 n); cDNA 529 539 ( 11 n); score: 1.000
MATCH 21326110+ 18965012+ 0.870 443 0.822 C
PGS_21326110+_18965012+ (12380 12640,12723 12823,12921 12990,13197 13207)
Alignment (genomic DNA sequence = upper lines):
TCACAACTGA ATCCGCCGCG CAAGGCATCC AAGGATTTGT TC-G---TC- --CTTCGGAG 12432
| ||||| || | ||||||| |||||||||| |||||||||| || | || ||||||||
T-ACAACCGA ACCCGCCGCA CAAGGCATCC AAGGATTTGT TCGGCCTTCG GACTTCGGAG 138
GGTGGGGAAT CGAAG---C- -G-A--CGAA AACGAAGCAA TGAACGAGGC GGTGCAGGAG 12484
||| |||||| ||||| | | | ||| ||| |||||| |||||||||| ||||||||||
GGTAGGGAAT CGAAGCCACG AGAAGTCGAG AACAAAGCAA TGAACGAGGC GGTGCAGGAG 198
GCGAAGCTGC TGCGGCAGGT GAACGCGCTC ATCGTGGCGC ACCTCCGTAG CCAGAACCTC 12544
|||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ||||||||||
GCGAAGCTGC TGCGGCAGGT GAACGCGCTC ATCGTGGCAC ACCTCCGTAG CCAGAACCTC 258
GGGCAGGCCG CAGCCGCCGT CGCCGCCGCC ACCATGACCC CCATCTCCGC CGCCGAATCC 12604
|||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||
GGGCAGGCCG CAGCTGCCGT CGCCGCCGCC ACCATGACCC CCATCTCCGC TGCCGAATCC 318
GTCCCCGCAA ATCAACTCCT ACGTCTCGTG GCCAAGGTCC CCCCACTTTC CCCTTCCTCC 12664
|||||||| | |||| ||||| ||||||||| ||||||
GTCCCCGCCA ATCACCTCCT GCGTCTCGTG GCCAAG.... .......... .......... 354
GGCAGTCTGG CCTAGGATTT GTTCTGCACG GGCCTAAACC CTCACTGTTG GTTCGCAGGG 12724
||
.......... .......... .......... .......... .......... ........GG 356
CCTCGCGGCG GAGGGCGGAG GA-G-GA-GC CGCTTCCGCA TTCGACTCCG CCGGGTTCGG 12781
|||||| ||| ||| ||||| || | || || |||||||||| |||||||||| ||||||||||
CCTCGCCGCG GAGCACGGAG GAGGTGACGC CGCTTCCGCA TTCGACTCCG CCGGGTTCGG 416
TGGGGCGGTG CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AGGTAAACCC CAACCTTGCG 12841
|| ||||||| ||||||| || |||||||||| |||||||||| ||
TGTGGCGGTG CAGCCGCCCG GCTCCAGTGC CGTGGATTTC AG........ .......... 458
CCCCCGCGGT GTTGCCTAGT GGCAGTGTTT TTTCTGGTGC TGAACATTGG TGAGGAGTGT 12901
.......... .......... .......... .......... .......... .......... 458
TGACGCCGGT GCTGTGTAGT ATGCAGGATG TCAAGGGCTC ATCCAAGAGC TTCCCCAAGC 12961
| || ||||||| |||||||||| |||||| ||| ||||||||||
.......... .........T ATTCAGGATG TCAAGGGCTC ATCCAAAAGC TTCCCCAAGC 499
ACGAGGCGAA GCATGTCTCT GACCATAAGG TGCTTATGAT TCCAATTTTC CCTTGCAAAT 13021
|||||||||| |||||||||| |||||||||
ACGAGGCGAA GCATGTCTCT GACCATAAG. .......... .......... .......... 528
GCACCACTTG AAAGTTGAAA CAATTTTTGT GTCAGACTCC TGTTTATCTG AATATTTACT 13081
.......... .......... .......... .......... .......... .......... 528
ACTGCTATTG CACATTTTGC ACTTATCACA GTACCATGAT TATGTAGACA ACTTGGGATT 13141
.......... .......... .......... .......... .......... .......... 528
GACCAACAAT AGATTTTACT GATGTTTATT GGCTTACCAT TGCATTTTTC TGTAGAACGC 13201
|||||
.......... .......... .......... .......... .......... .....AACGC 533
TGCCCG 13207
||||||
TGCCCG 539
********************************************************************************
EST sequence 70 +strand (File: 13090650+)
1 GACGGAGGGG AGGGCCGAGA TGGACGCGGC GGTGCAAGAG GCCAAGCTGC TGCGGCAAGT
61 GAACGCCCTC ATCGTGGCGC ACCTGCGCGA CCAGAACCTC ACGCAAGCCG CCGCCGCCGT
121 CGCCGCCGGC ACCATGACCC CCAAAGCCGA CGCCTCCCTC CCCAACCACC TTCTNCGGCT
181 CGTCGCCAAG GGCCTCGCGG CTGAGCGGGA GGAGGCGGCC AGGGGAGGCG GAACTCCCCC
241 CGCGTTTGAC TCCGCTGGCA GCGGTGGGCT GGCGCGCCCG CTCGGCACCA GCGCCGTGGA
301 TTTCAGTGTG CAGAATGTCA TGGGCCCGTC CAAGACTTTC CCCAAGCACG AGACCAGGCA
361 CATCTCCGAT CATAAGAATG TTGCCAGATG TGCGAAATTT AGTCCTGATG GGAAACATTT
421 TGCAACTGGA AGTGGGGACA CATTCATTAA GTTCTTTGAG GTATCAAAAA TTAAGCAGAC
481 GATGTTAGGA GACTCCAAAA AG
Predicted gene structure (within gDNA segment 11973 to 13815):
Exon 1 12444 12648 ( 205 n); cDNA 1 198 ( 198 n); score: 0.776
Intron 1 12649 12713 ( 65 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0.60)
Exon 2 12714 12823 ( 110 n); cDNA 199 306 ( 108 n); score: 0.709
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.80), Pa: 0.000 (s: 0.82)
Exon 3 12921 12990 ( 70 n); cDNA 307 376 ( 70 n); score: 0.800
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.80), Pa: 0.978 (s: 0.88)
Exon 4 13197 13280 ( 84 n); cDNA 377 460 ( 84 n); score: 0.857
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 0.84), Pa: 1.000 (s: 0.81)
Exon 5 13381 13422 ( 42 n); cDNA 461 502 ( 42 n); score: 0.810
MATCH 21326110+ 13090650+ 0.778 511 1.018 C
PGS_21326110+_13090650+ (12444 12648,12714 12823,12921 12990,13197 13280,13381 13422)
Alignment (genomic DNA sequence = upper lines):
GAAGCGACGA AAACGAAGCA ATGAACGAGG CGGTGCAGGA GGCGAAGCTG CTGCGGCAGG 12503
|| | || | | | | ||| ||| || ||||||| || ||| |||||| |||||||| |
GACG-GAGGG GAGGGCCGAG ATGGACGCGG CGGTGCAAGA GGCCAAGCTG CTGCGGCAAG 59
TGAACGCGCT CATCGTGGCG CACCTCCGTA GCCAGAACCT CGGGCAGGCC GCAGCCGCCG 12563
||||||| || |||||||||| ||||| || ||||||||| | ||| ||| || |||||||
TGAACGCCCT CATCGTGGCG CACCTGCGCG ACCAGAACCT CACGCAAGCC GCCGCCGCCG 119
TCGCCGCCGC CACCATGACC CCCATCTCCG CCGCCGAATC CGTCCCCGCA AATCAACTCC 12623
||||||||| |||||||||| |||| ||| |||| || | | ||| | || || || |
TCGCCGCCGG CACCATGACC CCCAAAGCCG ACGCC---TC CCT-CCC-C- AACCACCTTC 173
TACGTCTCGT GGCCAAGGTC CCCCCACTTT CCCCTTCCTC CGGCAGTCTG GCCTAGGATT 12683
| || ||||| ||||||| | | | |
TNCGGCTCGT CGCCAAGGGC CTCGC..... .......... .......... .......... 198
TGTTCTGCAC GGGCCTAAAC CCTCACTGTT GGTTCGCAGG GCCTCGCGGC GGAGGGCGGA 12743
|| | | || | | ||| || | |||
.......... .......... .......... GGCT-G-AGC GGGAGGAGGC GGCCAGGGGA 226
GGAGGAGCCG CTTCCGCATT CGACTCCGCC GGGTTCGGTG GGGCGGTGCA GCCGCTCGGC 12803
|| ||| | | |||| || |||||||| || ||||| || || || |||||||||
GGCGGAACTC CCCCCGCGTT TGACTCCGCT GGCAGCGGTG GGCTGGCGCG CCCGCTCGGC 286
TCCAGTGCCG TGGATTTCAG GTAAACCCCA ACCTTGCGCC CCCGCGGTGT TGCCTAGTGG 12863
|||| |||| ||||||||||
ACCAGCGCCG TGGATTTCAG .......... .......... .......... .......... 306
CAGTGTTTTT TCTGGTGCTG AACATTGGTG AGGAGTGTTG ACGCCGGTGC TGTGTAGTAT 12923
| |
.......... .......... .......... .......... .......... .......TGT 309
GCAGGATGTC AAGGGCTCAT CCAAGAGCTT CCCCAAGCAC GAGGCGAAGC ATGTCTCTGA 12983
|||| ||||| | |||| | | |||||| || |||||||||| ||| | | || | |||| ||
GCAGAATGTC ATGGGCCCGT CCAAGACTTT CCCCAAGCAC GAGACCAGGC ACATCTCCGA 369
CCATAAGGTG CTTATGATTC CAATTTTCCC TTGCAAATGC ACCACTTGAA AGTTGAAACA 13043
||||||
TCATAAG... .......... .......... .......... .......... .......... 376
ATTTTTGTGT CAGACTCCTG TTTATCTGAA TATTTACTAC TGCTATTGCA CATTTTGCAC 13103
.......... .......... .......... .......... .......... .......... 376
TTATCACAGT ACCATGATTA TGTAGACAAC TTGGGATTGA CCAACAATAG ATTTTACTGA 13163
.......... .......... .......... .......... .......... .......... 376
TGTTTATTGG CTTACCATTG CATTTTTCTG TAGAACGCTG CCCGGTGTGC GAAATTTAGT 13223
|| | || || | ||||| ||||||||||
.......... .......... .......... ...AATGTTG CCAGATGTGC GAAATTTAGT 403
CCTGATGGGA AGTATTTTGC AACTGGGAGT GCTGATACAT CCATTAAGTT TTTTGAGGTG 13283
|||||||||| | ||||||| |||||| ||| | || |||| ||||||||| ||||||
CCTGATGGGA AACATTTTGC AACTGGAAGT GGGGACACAT TCATTAAGTT CTTTGAG... 460
AACTTGAAAT TTGAATTGCC ACTCAGGTTG CTAGGTGGGG CTTGTGCTGT TTTCTACTTA 13343
.......... .......... .......... .......... .......... .......... 460
GTTGCAACTT GTAACTCACT ATTGCTCTGT CCTGCAGGTT GCTAAAATTA AGCAGACTAT 13403
|| | ||||||| ||||||| ||
.......... .......... .......... .......GTA TCAAAAATTA AGCAGACGAT 483
GGTAGGGGAC TCCAAAGAT 13422
| |||| ||| |||||| |
GTTAGGAGAC TCCAAAAAG 502
********************************************************************************
EST sequence 72 +strand (File: 12035017+)
1 GGAACACTGA ACACATTTGC TCTGAAGCTT GAGTCCACTC CCACTCCATT TCACAGTTGG
61 CCCCACCCCC ACGGGAGGAC GGAGGGGAGG GCCGAGATGG ACGCGGCGGT GCAGGAGGCC
121 AAGCTGCTGC GGCAGGTGAA CGCCCTCATC GTGGCGCACC TCCGCGACCA GAACCTCACG
181 CAGGCCGCCG CCGCCGTCGC CGCCGCCACC ATGACCCCCA AGGCCGACGC CTCCCTCCCC
241 AACCACCTCC TCCGCCTCGT CGCCAAGGGC CTCGCGGCTG AGCGGGAGGA GGCGGCCAGG
301 GGAGGCGGAG CTCCCCCCGC GTTTGACTCC GCTGGCGGCG GTGGGCTGGC GCGCCCGCTC
361 GGCACCAGCG CCGTGGATTT CAGTGTGCAG AATGTCAGGG GCCCGTCCAA GACTTTCCCC
421 AAGCACGAGA CCAGGCACAT CTCCGATCAT AAGAATGTTG CCAGATGTGC GAAATTTAGT
481 CCTGATGGGA AACATTTTGC AACTGGAAGT GGGGACACAT CCATTAAGTT CTTTGAGGTA
541 TCAAAAATTA AGCAGACGAT GTTAGGAGAC TCCAAAGAAG GCCCTGGCCG ACCTGTGGTC
601 CGTACATTTT ATGACCATGT GCAAGCCCAT CAATGATCTG GGATTTCCAT CCTATTAGCC
661 CAATACTGAT ATCTGCAGCA AAAGATAATA CGATTAAAGT
Predicted gene structure (within gDNA segment 11652 to 14373):
Exon 1 12464 12648 ( 185 n); cDNA 97 275 ( 179 n); score: 0.843
Intron 1 12649 12713 ( 65 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.62)
Exon 2 12714 12823 ( 110 n); cDNA 276 383 ( 108 n); score: 0.718
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.80), Pa: 0.000 (s: 0.82)
Exon 3 12921 12990 ( 70 n); cDNA 384 453 ( 70 n); score: 0.800
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.80), Pa: 0.978 (s: 0.88)
Exon 4 13197 13280 ( 84 n); cDNA 454 537 ( 84 n); score: 0.869
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 0.86), Pa: 1.000 (s: 0.82)
Exon 5 13381 13467 ( 87 n); cDNA 538 625 ( 88 n); score: 0.759
Intron 5 13468 13886 ( 419 n); Pd: 0.992 (s: 0.69), Pa: 0.939 (s: 0.82)
Exon 6 13887 13957 ( 71 n); cDNA 626 697 ( 72 n); score: 0.817
MATCH 21326110+ 12035017+ 0.804 607 0.867 C
PGS_21326110+_12035017+ (12464 12648,12714 12823,12921 12990,13197 13280,13381 13467,13887 13957)
Alignment (genomic DNA sequence = upper lines):
ATGAACGAGG CGGTGCAGGA GGCGAAGCTG CTGCGGCAGG TGAACGCGCT CATCGTGGCG 12523
||| ||| || |||||||||| ||| |||||| |||||||||| ||||||| || ||||||||||
ATGGACGCGG CGGTGCAGGA GGCCAAGCTG CTGCGGCAGG TGAACGCCCT CATCGTGGCG 156
CACCTCCGTA GCCAGAACCT CGGGCAGGCC GCAGCCGCCG TCGCCGCCGC CACCATGACC 12583
|||||||| ||||||||| | ||||||| || ||||||| |||||||||| ||||||||||
CACCTCCGCG ACCAGAACCT CACGCAGGCC GCCGCCGCCG TCGCCGCCGC CACCATGACC 216
CCCATCTCCG CCGCCGAATC CGTCCCCGCA AATCAACTCC TACGTCTCGT GGCCAAGGTC 12643
|||| ||| |||| || | | ||| | || || |||| | || ||||| ||||||| |
CCCAAGGCCG ACGCC---TC CCT-CCC-C- AACCACCTCC TCCGCCTCGT CGCCAAGGGC 270
CCCCCACTTT CCCCTTCCTC CGGCAGTCTG GCCTAGGATT TGTTCTGCAC GGGCCTAAAC 12703
| | |
CTCGC..... .......... .......... .......... .......... .......... 275
CCTCACTGTT GGTTCGCAGG GCCTCGCGGC GGAGGGCGGA GGAGGAGCCG CTTCCGCATT 12763
|| | | || | | ||| || | ||| || ||||| | |||| ||
.......... GGCT-G-AGC GGGAGGAGGC GGCCAGGGGA GGCGGAGCTC CCCCCGCGTT 323
CGACTCCGCC GGGTTCGGTG GGGCGGTGCA GCCGCTCGGC TCCAGTGCCG TGGATTTCAG 12823
|||||||| || ||||| || || || ||||||||| |||| |||| ||||||||||
TGACTCCGCT GGCGGCGGTG GGCTGGCGCG CCCGCTCGGC ACCAGCGCCG TGGATTTCAG 383
GTAAACCCCA ACCTTGCGCC CCCGCGGTGT TGCCTAGTGG CAGTGTTTTT TCTGGTGCTG 12883
.......... .......... .......... .......... .......... .......... 383
AACATTGGTG AGGAGTGTTG ACGCCGGTGC TGTGTAGTAT GCAGGATGTC AAGGGCTCAT 12943
| | |||| ||||| | |||| | |
.......... .......... .......... .......TGT GCAGAATGTC AGGGGCCCGT 406
CCAAGAGCTT CCCCAAGCAC GAGGCGAAGC ATGTCTCTGA CCATAAGGTG CTTATGATTC 13003
|||||| || |||||||||| ||| | | || | |||| || ||||||
CCAAGACTTT CCCCAAGCAC GAGACCAGGC ACATCTCCGA TCATAAG... .......... 453
CAATTTTCCC TTGCAAATGC ACCACTTGAA AGTTGAAACA ATTTTTGTGT CAGACTCCTG 13063
.......... .......... .......... .......... .......... .......... 453
TTTATCTGAA TATTTACTAC TGCTATTGCA CATTTTGCAC TTATCACAGT ACCATGATTA 13123
.......... .......... .......... .......... .......... .......... 453
TGTAGACAAC TTGGGATTGA CCAACAATAG ATTTTACTGA TGTTTATTGG CTTACCATTG 13183
.......... .......... .......... .......... .......... .......... 453
CATTTTTCTG TAGAACGCTG CCCGGTGTGC GAAATTTAGT CCTGATGGGA AGTATTTTGC 13243
|| | || || | ||||| |||||||||| |||||||||| | |||||||
.......... ...AATGTTG CCAGATGTGC GAAATTTAGT CCTGATGGGA AACATTTTGC 500
AACTGGGAGT GCTGATACAT CCATTAAGTT TTTTGAGGTG AACTTGAAAT TTGAATTGCC 13303
|||||| ||| | || |||| |||||||||| ||||||
AACTGGAAGT GGGGACACAT CCATTAAGTT CTTTGAG... .......... .......... 537
ACTCAGGTTG CTAGGTGGGG CTTGTGCTGT TTTCTACTTA GTTGCAACTT GTAACTCACT 13363
.......... .......... .......... .......... .......... .......... 537
ATTGCTCTGT CCTGCAGGTT GCTAAAATTA AGCAGACTAT GGTAGGGGAC TCCAAAGATG 13423
|| | ||||||| ||||||| || | |||| ||| |||||||| |
.......... .......GTA TCAAAAATTA AGCAGACGAT GTTAGGAGAC TCCAAAGAAG 580
GTCCTGCCAG GCCTGTGATT CGCACATTTT ATGATCACAC AC-AGGTGAG CATGTATTGC 13482
| |||| | | |||||| | || ||||||| |||| || | ||
GCCCTGGCCG ACCTGTGGTC CGTACATTTT ATGACCATGT GCAAG..... .......... 625
TCATATATGA CAGTTTATTT ACTCTTCAAG GTCGTGAGAC TCTTTTCAAC ACTTCCACAA 13542
.......... .......... .......... .......... .......... .......... 625
GATTGCCTCC GAGTTAGGTC TCCTGCAGTA TTTTTTTTCC TTTAATATGC GGAGAGCTGC 13602
.......... .......... .......... .......... .......... .......... 625
ATATCATTGC ATTATAGAAA GACTGAAATA CATGGGTAGA TCAAATCCAC CTGCCACCAC 13662
.......... .......... .......... .......... .......... .......... 625
AGACCACACT TATATACACA CGCTCAACTC ACGTTTAGCA CACTGGATGC ACACCTAGCA 13722
.......... .......... .......... .......... .......... .......... 625
GCTGCAATTT GTAGTTAGAT ATTTGCTTAC TGAGCTGTGT GGAGCATTGA CATGATATTC 13782
.......... .......... .......... .......... .......... .......... 625
AATTTTTTAA TAAACAACAT TTTTTTCCAT TTTCACTAGT TTCTACTTCA TTTCCCATTG 13842
.......... .......... .......... .......... .......... .......... 625
CTCAAATTTC CACTGTGCTC GTAAACATGA TTGATTTCTT GCAGGCCATC AATGATCT-G 13901
||||| |||||||| |
.......... .......... .......... .......... ....CCCATC AATGATCTGG 641
GATTTTCATC CTGAGAGTCC AATACTGATA TCAGCTGCAA AAGACAATAC AATAAA 13957
||||| |||| || || || |||||||||| || || |||| |||| ||||| || ||
GATTTCCATC CTATTAGCCC AATACTGATA TCTGCAGCAA AAGATAATAC GATTAA 697
********************************************************************************
EST sequence 73 +strand (File: 12035019+)
1 GGAACACTGA ACACATTTGC TCTGAAGCTT GAGTCCACTC CCACTCCATT TCACAGTTGG
61 CCCCACCCCC ACGGGAGGAC GGAGGGGAGG GCCGAGATGG ACGCGGCGGT GCAGGAGGCC
121 AAGCTGCTGC GGCAGGTGAA CGCCCTCATC GTGGCGCACC TCCGCGACCA GAACCTCACG
181 CAGGCCGCCG CCGCCGTCGC CGCCGCCACC ATGACCCCCA AGGCCGACGC CTCCCTCCCC
241 AACCACCTCC TCCGCCTCGT CGCCAAGGGC CTCGCGGCTG AGCGGGAGGA GGCGGCCAGG
301 GGAGGCGGAG CTCCCCCCGC GTTTGACTCC GCTGGCGGCG GTGGGCTGGC GCGCCCGCTC
361 GGCACCAGCG CCGTGGATTT CAGTGTGCAG AATGTCAGGG GCCCGTCCAA GACTTTCCCC
421 AAGCACGAGA CCAGGCACAT CTCCGATCAT AAGAATGTTG CCAGATGTGC GAAATTTAGT
481 CCTGATGGGA AACATTTTGC AACTGGAAGT GGGGACACAT CCATTAAGTT CTTTGAGGTA
541 TCAAAAATTA AGCAGACGAT GTTAGGAGAC TCCAAAGAAG GCCCTGGCCG ACCTGTGGTC
601 CGTACATTTT ATGACCATTG TGCAAGCCC
Predicted gene structure (within gDNA segment 11652 to 14065):
Exon 1 12464 12648 ( 185 n); cDNA 97 275 ( 179 n); score: 0.843
Intron 1 12649 12713 ( 65 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.62)
Exon 2 12714 12823 ( 110 n); cDNA 276 383 ( 108 n); score: 0.718
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.80), Pa: 0.000 (s: 0.82)
Exon 3 12921 12990 ( 70 n); cDNA 384 453 ( 70 n); score: 0.800
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.80), Pa: 0.978 (s: 0.88)
Exon 4 13197 13280 ( 84 n); cDNA 454 537 ( 84 n); score: 0.869
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 0.86), Pa: 1.000 (s: 0.82)
Exon 5 13381 13467 ( 87 n); cDNA 538 622 ( 85 n); score: 0.770
Intron 5 13468 13619 ( 152 n); Pd: 0.992 (s: 0.72), Pa: 0.559 (s: 0)
Exon 6 13620 13626 ( 7 n); cDNA 623 629 ( 7 n); score: 0.571
MATCH 21326110+ 12035019+ 0.804 543 0.863 C
PGS_21326110+_12035019+ (12464 12648,12714 12823,12921 12990,13197 13280,13381 13467,13620 13626)
Alignment (genomic DNA sequence = upper lines):
ATGAACGAGG CGGTGCAGGA GGCGAAGCTG CTGCGGCAGG TGAACGCGCT CATCGTGGCG 12523
||| ||| || |||||||||| ||| |||||| |||||||||| ||||||| || ||||||||||
ATGGACGCGG CGGTGCAGGA GGCCAAGCTG CTGCGGCAGG TGAACGCCCT CATCGTGGCG 156
CACCTCCGTA GCCAGAACCT CGGGCAGGCC GCAGCCGCCG TCGCCGCCGC CACCATGACC 12583
|||||||| ||||||||| | ||||||| || ||||||| |||||||||| ||||||||||
CACCTCCGCG ACCAGAACCT CACGCAGGCC GCCGCCGCCG TCGCCGCCGC CACCATGACC 216
CCCATCTCCG CCGCCGAATC CGTCCCCGCA AATCAACTCC TACGTCTCGT GGCCAAGGTC 12643
|||| ||| |||| || | | ||| | || || |||| | || ||||| ||||||| |
CCCAAGGCCG ACGCC---TC CCT-CCC-C- AACCACCTCC TCCGCCTCGT CGCCAAGGGC 270
CCCCCACTTT CCCCTTCCTC CGGCAGTCTG GCCTAGGATT TGTTCTGCAC GGGCCTAAAC 12703
| | |
CTCGC..... .......... .......... .......... .......... .......... 275
CCTCACTGTT GGTTCGCAGG GCCTCGCGGC GGAGGGCGGA GGAGGAGCCG CTTCCGCATT 12763
|| | | || | | ||| || | ||| || ||||| | |||| ||
.......... GGCT-G-AGC GGGAGGAGGC GGCCAGGGGA GGCGGAGCTC CCCCCGCGTT 323
CGACTCCGCC GGGTTCGGTG GGGCGGTGCA GCCGCTCGGC TCCAGTGCCG TGGATTTCAG 12823
|||||||| || ||||| || || || ||||||||| |||| |||| ||||||||||
TGACTCCGCT GGCGGCGGTG GGCTGGCGCG CCCGCTCGGC ACCAGCGCCG TGGATTTCAG 383
GTAAACCCCA ACCTTGCGCC CCCGCGGTGT TGCCTAGTGG CAGTGTTTTT TCTGGTGCTG 12883
.......... .......... .......... .......... .......... .......... 383
AACATTGGTG AGGAGTGTTG ACGCCGGTGC TGTGTAGTAT GCAGGATGTC AAGGGCTCAT 12943
| | |||| ||||| | |||| | |
.......... .......... .......... .......TGT GCAGAATGTC AGGGGCCCGT 406
CCAAGAGCTT CCCCAAGCAC GAGGCGAAGC ATGTCTCTGA CCATAAGGTG CTTATGATTC 13003
|||||| || |||||||||| ||| | | || | |||| || ||||||
CCAAGACTTT CCCCAAGCAC GAGACCAGGC ACATCTCCGA TCATAAG... .......... 453
CAATTTTCCC TTGCAAATGC ACCACTTGAA AGTTGAAACA ATTTTTGTGT CAGACTCCTG 13063
.......... .......... .......... .......... .......... .......... 453
TTTATCTGAA TATTTACTAC TGCTATTGCA CATTTTGCAC TTATCACAGT ACCATGATTA 13123
.......... .......... .......... .......... .......... .......... 453
TGTAGACAAC TTGGGATTGA CCAACAATAG ATTTTACTGA TGTTTATTGG CTTACCATTG 13183
.......... .......... .......... .......... .......... .......... 453
CATTTTTCTG TAGAACGCTG CCCGGTGTGC GAAATTTAGT CCTGATGGGA AGTATTTTGC 13243
|| | || || | ||||| |||||||||| |||||||||| | |||||||
.......... ...AATGTTG CCAGATGTGC GAAATTTAGT CCTGATGGGA AACATTTTGC 500
AACTGGGAGT GCTGATACAT CCATTAAGTT TTTTGAGGTG AACTTGAAAT TTGAATTGCC 13303
|||||| ||| | || |||| |||||||||| ||||||
AACTGGAAGT GGGGACACAT CCATTAAGTT CTTTGAG... .......... .......... 537
ACTCAGGTTG CTAGGTGGGG CTTGTGCTGT TTTCTACTTA GTTGCAACTT GTAACTCACT 13363
.......... .......... .......... .......... .......... .......... 537
ATTGCTCTGT CCTGCAGGTT GCTAAAATTA AGCAGACTAT GGTAGGGGAC TCCAAAGATG 13423
|| | ||||||| ||||||| || | |||| ||| |||||||| |
.......... .......GTA TCAAAAATTA AGCAGACGAT GTTAGGAGAC TCCAAAGAAG 580
GTCCTGCCAG GCCTGTGATT CGCACATTTT ATGATCACAC ACAGGTGAGC ATGTATTGCT 13483
| |||| | | |||||| | || ||||||| |||| | || |
GCCCTGGCCG ACCTGTGGTC CGTACATTTT ATGA-C-CAT TGTG...... .......... 622
CATATATGAC AGTTTATTTA CTCTTCAAGG TCGTGAGACT CTTTTCAACA CTTCCACAAG 13543
.......... .......... .......... .......... .......... .......... 622
ATTGCCTCCG AGTTAGGTCT CCTGCAGTAT TTTTTTTCCT TTAATATGCG GAGAGCTGCA 13603
.......... .......... .......... .......... .......... .......... 622
TATCATTGCA TTATAGAAAG ACT 13626
||| |
.......... ......CAAG CCC 629
********************************************************************************
EST sequence 78 +strand (File: 24328201+)
1 GGACGCGGCG GTGCAGGAGG CCAAGCTGCT GCGGCAGGTG AACGCCCTCA TCGTGGCGCA
61 CCTCCGCGAC CAGAACCTCA CGCAGGCCGC CGCCGCCGTC GCCGCCGCCA CCATGACCCC
121 CAAGGCCGAC GCCTCCCTCC CCAACCACCT CCTCCGCCTC GTCGCCAAGG GCCTCGCGGC
181 TGAGCGGGAG GAGGCGGCCA GGGGAGGCGG AGCTCCCCCC GCGTTTGACT CCGCTGGCGG
241 CGGTGGGCTG GCGCGCCCGC TCGGCACCAG CGCCGTGGAT TTCAGTGTGC AGAATGTCAG
301 GGGCCCGTCC AAGACTTTCC CCAAGCACGA GACCAGGCAC ATCTCCGATC ATAAGAATGT
361 TGCCAGATGT GCGAAATTTA GTCCTGATGG GAAACATTTT GCAACTGGAA GTGGGGACAC
421 ATCCATTAAG TTCTTTGAGG TATCAAAAAT TAAGCAGACG ATGTTAGGAG ACTCCAAAGA
481 AGGCCCTGGC CGACCTGTGG TCCGTACATT TTATGACCAT GTGCAGCCCA TCAATGATCT
541 GGATTTCCAT CCTATTAGCC CAATACTGAT ATCTGCAGCA AAAGATAATA CGATAAAGTT
601 CTTTGAGTTC TCCAAAACTG CTGCAAG
Predicted gene structure (within gDNA segment 12142 to 14508):
Exon 1 12466 12648 ( 183 n); cDNA 1 177 ( 177 n); score: 0.842
Intron 1 12649 12713 ( 65 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.62)
Exon 2 12714 12823 ( 110 n); cDNA 178 285 ( 108 n); score: 0.718
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.80), Pa: 0.000 (s: 0.82)
Exon 3 12921 12990 ( 70 n); cDNA 286 355 ( 70 n); score: 0.800
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.80), Pa: 0.978 (s: 0.88)
Exon 4 13197 13280 ( 84 n); cDNA 356 439 ( 84 n); score: 0.869
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 0.86), Pa: 1.000 (s: 0.82)
Exon 5 13381 13467 ( 87 n); cDNA 440 526 ( 87 n); score: 0.782
Intron 5 13468 13886 ( 419 n); Pd: 0.992 (s: 0.74), Pa: 0.939 (s: 0.86)
Exon 6 13887 13957 ( 71 n); cDNA 527 597 ( 71 n); score: 0.859
Intron 6 13958 14109 ( 152 n); Pd: 0.973 (s: 0.84), Pa: 0.989 (s: 0)
Exon 7 14110 14139 ( 30 n); cDNA 598 627 ( 30 n); score: 0.700
MATCH 21326110+ 24328201+ 0.812 635 1.013 C
PGS_21326110+_24328201+ (12466 12648,12714 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14139)
Alignment (genomic DNA sequence = upper lines):
GAACGAGGCG GTGCAGGAGG CGAAGCTGCT GCGGCAGGTG AACGCGCTCA TCGTGGCGCA 12525
| ||| |||| |||||||||| | |||||||| |||||||||| ||||| |||| ||||||||||
GGACGCGGCG GTGCAGGAGG CCAAGCTGCT GCGGCAGGTG AACGCCCTCA TCGTGGCGCA 60
CCTCCGTAGC CAGAACCTCG GGCAGGCCGC AGCCGCCGTC GCCGCCGCCA CCATGACCCC 12585
|||||| | ||||||||| ||||||||| ||||||||| |||||||||| ||||||||||
CCTCCGCGAC CAGAACCTCA CGCAGGCCGC CGCCGCCGTC GCCGCCGCCA CCATGACCCC 120
CATCTCCGCC GCCGAATCCG TCCCCGCAAA TCAACTCCTA CGTCTCGTGG CCAAGGTCCC 12645
|| ||| | ||| ||| ||||| || || ||||| || ||||| | |||||| ||
CAAGGCCGAC GCC---TCCC TCCCC--AAC -CACCTCCTC CGCCTCGTCG CCAAGGGCCT 174
CCCACTTTCC CCTTCCTCCG GCAGTCTGGC CTAGGATTTG TTCTGCACGG GCCTAAACCC 12705
| |
CGC....... .......... .......... .......... .......... .......... 177
TCACTGTTGG TTCGCAGGGC CTCGCGGCGG AGGGCGGAGG AGGAGCCGCT TCCGCATTCG 12765
|| | | || | | ||||| | ||||| ||||| | |||| || |
........GG CT-G-AGCGG GAGGAGGCGG CCAGGGGAGG CGGAGCTCCC CCCGCGTTTG 227
ACTCCGCCGG GTTCGGTGGG GCGGTGCAGC CGCTCGGCTC CAGTGCCGTG GATTTCAGGT 12825
||||||| || ||||||| || || | |||||||| | ||| |||||| ||||||||
ACTCCGCTGG CGGCGGTGGG CTGGCGCGCC CGCTCGGCAC CAGCGCCGTG GATTTCAG.. 285
AAACCCCAAC CTTGCGCCCC CGCGGTGTTG CCTAGTGGCA GTGTTTTTTC TGGTGCTGAA 12885
.......... .......... .......... .......... .......... .......... 285
CATTGGTGAG GAGTGTTGAC GCCGGTGCTG TGTAGTATGC AGGATGTCAA GGGCTCATCC 12945
| ||| || |||||| |||| | |||
.......... .......... .......... .....TGTGC AGAATGTCAG GGGCCCGTCC 310
AAGAGCTTCC CCAAGCACGA GGCGAAGCAT GTCTCTGACC ATAAGGTGCT TATGATTCCA 13005
|||| |||| |||||||||| | | | ||| |||| || | |||||
AAGACTTTCC CCAAGCACGA GACCAGGCAC ATCTCCGATC ATAAG..... .......... 355
ATTTTCCCTT GCAAATGCAC CACTTGAAAG TTGAAACAAT TTTTGTGTCA GACTCCTGTT 13065
.......... .......... .......... .......... .......... .......... 355
TATCTGAATA TTTACTACTG CTATTGCACA TTTTGCACTT ATCACAGTAC CATGATTATG 13125
.......... .......... .......... .......... .......... .......... 355
TAGACAACTT GGGATTGACC AACAATAGAT TTTACTGATG TTTATTGGCT TACCATTGCA 13185
.......... .......... .......... .......... .......... .......... 355
TTTTTCTGTA GAACGCTGCC CGGTGTGCGA AATTTAGTCC TGATGGGAAG TATTTTGCAA 13245
|| | |||| | ||||||| |||||||||| ||||||||| |||||||||
.......... .AATGTTGCC AGATGTGCGA AATTTAGTCC TGATGGGAAA CATTTTGCAA 404
CTGGGAGTGC TGATACATCC ATTAAGTTTT TTGAGGTGAA CTTGAAATTT GAATTGCCAC 13305
|||| |||| || |||||| |||||||| | |||||
CTGGAAGTGG GGACACATCC ATTAAGTTCT TTGAG..... .......... .......... 439
TCAGGTTGCT AGGTGGGGCT TGTGCTGTTT TCTACTTAGT TGCAACTTGT AACTCACTAT 13365
.......... .......... .......... .......... .......... .......... 439
TGCTCTGTCC TGCAGGTTGC TAAAATTAAG CAGACTATGG TAGGGGACTC CAAAGATGGT 13425
|| | ||||||||| ||||| ||| |||| ||||| |||||| ||
.......... .....GTATC AAAAATTAAG CAGACGATGT TAGGAGACTC CAAAGAAGGC 484
CCTGCCAGGC CTGTGATTCG CACATTTTAT GATCACACAC AGGTGAGCAT GTATTGCTCA 13485
|||| | | | ||||| | || ||||||||| || || | ||
CCTGGCCGAC CTGTGGTCCG TACATTTTAT GACCATGTGC AG........ .......... 526
TATATGACAG TTTATTTACT CTTCAAGGTC GTGAGACTCT TTTCAACACT TCCACAAGAT 13545
.......... .......... .......... .......... .......... .......... 526
TGCCTCCGAG TTAGGTCTCC TGCAGTATTT TTTTTCCTTT AATATGCGGA GAGCTGCATA 13605
.......... .......... .......... .......... .......... .......... 526
TCATTGCATT ATAGAAAGAC TGAAATACAT GGGTAGATCA AATCCACCTG CCACCACAGA 13665
.......... .......... .......... .......... .......... .......... 526
CCACACTTAT ATACACACGC TCAACTCACG TTTAGCACAC TGGATGCACA CCTAGCAGCT 13725
.......... .......... .......... .......... .......... .......... 526
GCAATTTGTA GTTAGATATT TGCTTACTGA GCTGTGTGGA GCATTGACAT GATATTCAAT 13785
.......... .......... .......... .......... .......... .......... 526
TTTTTAATAA ACAACATTTT TTTCCATTTT CACTAGTTTC TACTTCATTT CCCATTGCTC 13845
.......... .......... .......... .......... .......... .......... 526
AAATTTCCAC TGTGCTCGTA AACATGATTG ATTTCTTGCA GGCCATCAAT GATCTGGATT 13905
|||||||| ||||||||||
.......... .......... .......... .......... .CCCATCAAT GATCTGGATT 545
TTCATCCTGA GAGTCCAATA CTGATATCAG CTGCAAAAGA CAATACAATA AAGTATGCTT 13965
| |||||| || |||||| |||||||| | | |||||||| ||||| ||| ||
TCCATCCTAT TAGCCCAATA CTGATATCTG CAGCAAAAGA TAATACGATA AA........ 597
ATCCTTGATG TCTACACTCC GTGCTGTTAA ATTGTCTATT TGAAGTGCTC ATACTAGGAT 14025
.......... .......... .......... .......... .......... .......... 597
TAAGCATGAT TTTTTAGGAA TTTTTTGCGG TATTAATTGC TATCTGTGTT ATTGTTTTGT 14085
.......... .......... .......... .......... .......... .......... 597
ACATGAAAAA ATTTTGCTCA ACAGATTTTT TGACTTCTCA AAGACCAATG CGAG 14139
|| || ||| ||||| || || || | ||
.......... .......... ....GTTCTT TGAGTTCTCC AAAACTGCTG CAAG 627
********************************************************************************
EST sequence 12 +strand (File: 20809597+)
1 GATTCGGCAC GAGCGAAGGG GAGGAAGGTC GGGGCCGAGA TGGACGCGGC GGTGCAGGAG
61 GCGAAGCTGC TGCGGCAGGT GAACGCCCTC ATCGTGGCGC ACCTCCGGCG ACCAGAACCT
121 CACGCAGGCC GCCACCGGCC GTCGCCGCCG CCACCATGAC CCCCAGGGCC GACGCCTCCG
181 TCCCCAACCA CCTCCTCCGC CTCGTCGGCA AGGGTCTCGC GGTAGAGCAA GAGGAGGCGG
241 GGAGAGGAGG CGGAGCTCCC GCCGCGGCTG GGCTGGCGCG CCCGGTCGGC ACCAATGCCG
301 TGGATTTCAG TGTGCAGAAT GTTAGGGGCC CGTCCAAGAC TTTCCCCAAG CATGAAACCA
361 GGCACATCTC CGATCATAAG AATGTTGCCA GATGTGCAAA ATTTAGTCCT GATGGGAAAT
421 ATTTTGCAAC TGGAAGTGGG GACACATCCA TTAAGTTCTT TGAGGTGTCG AAAATTAAGC
481 AGACTATGTT AGGAGACTCC AAAGAAAGCT CTGGCCGGCC TGTGGTCCGT ACATTTTATG
541 ACCATGTGCA GCCCATCAAT GATCTGGATT TCCATCCTAT TAGCCCAATA CTGATATCTG
601 GAGC
Predicted gene structure (within gDNA segment 11937 to 14268):
Exon 1 12473 12640 ( 168 n); cDNA 49 212 ( 164 n); score: 0.839
Intron 1 12641 12722 ( 82 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.54)
Exon 2 12723 12823 ( 101 n); cDNA 213 310 ( 98 n); score: 0.634
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.72), Pa: 0.000 (s: 0.76)
Exon 3 12921 12990 ( 70 n); cDNA 311 380 ( 70 n); score: 0.757
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.76), Pa: 0.978 (s: 0.88)
Exon 4 13197 13280 ( 84 n); cDNA 381 464 ( 84 n); score: 0.869
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 0.88), Pa: 1.000 (s: 0.80)
Exon 5 13381 13467 ( 87 n); cDNA 465 551 ( 87 n); score: 0.782
Intron 5 13468 13886 ( 419 n); Pd: 0.992 (s: 0.72), Pa: 0.939 (s: 0.84)
Exon 6 13887 13939 ( 53 n); cDNA 552 604 ( 53 n); score: 0.830
MATCH 21326110+ 20809597+ 0.787 563 0.932 C
PGS_21326110+_20809597+ (12473 12640,12723 12823,12921 12990,13197 13280,13381 13467,13887 13939)
Alignment (genomic DNA sequence = upper lines):
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCGC TCATCGTGGC GCACCTCCGT 12532
|||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCCC TCATCGTGGC GCACCTCCGG 108
AG-CCAGAAC CTCGGGCAGG CCG-CAGCCG CCGTCGCCGC CGCCACCATG ACCCCCATCT 12590
| ||||||| ||| ||||| ||| || | | |||||||||| |||||||||| |||||||
CGACCAGAAC CTCACGCAGG CCGCCACCGG CCGTCGCCGC CGCCACCATG ACCCCCAGGG 168
CCGCCGCCGA ATCCGTCCCC GCAAATCAAC TCCTACGTCT CGTGGCCAAG GTCCCCCCAC 12650
||| |||| ||||| ||| | || || | |||| || || ||| | ||||
CCGACGCC-- -TCCGT-CCC -C-AACCACC TCCTCCGCCT CGTCGGCAAG .......... 212
TTTCCCCTTC CTCCGGCAGT CTGGCCTAGG ATTTGTTCTG CACGGGCCTA AACCCTCACT 12710
.......... .......... .......... .......... .......... .......... 212
GTTGGTTCGC AGGGCCTCGC GGCGGAGGGC GGAGGAGGAG CCGCTTCCGC ATTCGACTCC 12770
|| ||||| || || | ||||| | | | | | | || |
.......... ..GGTCTCGC GGTAGA-GCA AGAGGA-G-G CGGGGAGAGG AGGCGGAGCT 257
GCCGGGTTCG GTGGGGCGGT GCAGCCGCTC GGCTCCAGTG CCGTGGATTT CAGGTAAACC 12830
||| | |||| || || ||| || ||| ||| || |||||||||| |||
CCCGCCGCGG CTGGGCTGGC GCGCCCGGTC GGCACCAATG CCGTGGATTT CAG....... 310
CCAACCTTGC GCCCCCGCGG TGTTGCCTAG TGGCAGTGTT TTTTCTGGTG CTGAACATTG 12890
.......... .......... .......... .......... .......... .......... 310
GTGAGGAGTG TTGACGCCGG TGCTGTGTAG TATGCAGGAT GTCAAGGGCT CATCCAAGAG 12950
| ||||| || || | |||| | |||||||
.......... .......... .......... TGTGCAGAAT GTTAGGGGCC CGTCCAAGAC 340
CTTCCCCAAG CACGAGGCGA AGCATGTCTC TGACCATAAG GTGCTTATGA TTCCAATTTT 13010
||||||||| || || | | ||| |||| || ||||||
TTTCCCCAAG CATGAAACCA GGCACATCTC CGATCATAAG .......... .......... 380
CCCTTGCAAA TGCACCACTT GAAAGTTGAA ACAATTTTTG TGTCAGACTC CTGTTTATCT 13070
.......... .......... .......... .......... .......... .......... 380
GAATATTTAC TACTGCTATT GCACATTTTG CACTTATCAC AGTACCATGA TTATGTAGAC 13130
.......... .......... .......... .......... .......... .......... 380
AACTTGGGAT TGACCAACAA TAGATTTTAC TGATGTTTAT TGGCTTACCA TTGCATTTTT 13190
.......... .......... .......... .......... .......... .......... 380
CTGTAGAACG CTGCCCGGTG TGCGAAATTT AGTCCTGATG GGAAGTATTT TGCAACTGGG 13250
|| | |||| | || ||| |||||| |||||||||| |||| ||||| |||||||||
......AATG TTGCCAGATG TGCAAAATTT AGTCCTGATG GGAAATATTT TGCAACTGGA 434
AGTGCTGATA CATCCATTAA GTTTTTTGAG GTGAACTTGA AATTTGAATT GCCACTCAGG 13310
|||| || | |||||||||| ||| ||||||
AGTGGGGACA CATCCATTAA GTTCTTTGAG .......... .......... .......... 464
TTGCTAGGTG GGGCTTGTGC TGTTTTCTAC TTAGTTGCAA CTTGTAACTC ACTATTGCTC 13370
.......... .......... .......... .......... .......... .......... 464
TGTCCTGCAG GTTGCTAAAA TTAAGCAGAC TATGGTAGGG GACTCCAAAG ATGGTCCTGC 13430
|| | |||| |||||||||| |||| |||| |||||||||| | | |||
.......... GTGTCGAAAA TTAAGCAGAC TATGTTAGGA GACTCCAAAG AAAGCTCTGG 514
CAGGCCTGTG ATTCGCACAT TTTATGATCA CACACAGGTG AGCATGTATT GCTCATATAT 13490
| |||||||| | || |||| ||||||| || |||
CCGGCCTGTG GTCCGTACAT TTTATGACCA TGTGCAG... .......... .......... 551
GACAGTTTAT TTACTCTTCA AGGTCGTGAG ACTCTTTTCA ACACTTCCAC AAGATTGCCT 13550
.......... .......... .......... .......... .......... .......... 551
CCGAGTTAGG TCTCCTGCAG TATTTTTTTT CCTTTAATAT GCGGAGAGCT GCATATCATT 13610
.......... .......... .......... .......... .......... .......... 551
GCATTATAGA AAGACTGAAA TACATGGGTA GATCAAATCC ACCTGCCACC ACAGACCACA 13670
.......... .......... .......... .......... .......... .......... 551
CTTATATACA CACGCTCAAC TCACGTTTAG CACACTGGAT GCACACCTAG CAGCTGCAAT 13730
.......... .......... .......... .......... .......... .......... 551
TTGTAGTTAG ATATTTGCTT ACTGAGCTGT GTGGAGCATT GACATGATAT TCAATTTTTT 13790
.......... .......... .......... .......... .......... .......... 551
AATAAACAAC ATTTTTTTCC ATTTTCACTA GTTTCTACTT CATTTCCCAT TGCTCAAATT 13850
.......... .......... .......... .......... .......... .......... 551
TCCACTGTGC TCGTAAACAT GATTGATTTC TTGCAGGCCA TCAATGATCT GGATTTTCAT 13910
||| |||||||||| |||||| |||
.......... .......... .......... ......CCCA TCAATGATCT GGATTTCCAT 575
CCTGAGAGTC CAATACTGAT ATCAGCTGC 13939
||| || | |||||||||| ||| | ||
CCTATTAGCC CAATACTGAT ATCTGGAGC 604
********************************************************************************
EST sequence 83 +strand (File: 9661046+)
1 CCCGTTTCAT TAGCTCCCTT CCACTCCGTC AGAGATGGAC GCGGCGGTGC AGGAGGCGAA
61 GCTGCTGCGG CAGGTGAACG CCCTCATCGT GGCGCACCTC CGCGACCAGA ACCTCACGCA
121 GGCCGCCACC GCCGTCGCCG CCGCCACCAT GACCCCCAAG GCCGACGCCT CCGTCCCCAA
181 CCACCTCCTC CGCCTCGTCG CCAAGGGCCT CGCCGCCGAG CGGGAGGAGG CGGCCAGGGG
241 AGGCGGAGCT CCCGCCGCGT TTGACTCCGC TGCTGGCGGC GGTGGGCCGG CGCGCCCGCT
301 CGGCACCAAT GCCGTGGATT TCAGTGTGCA GAATGTTAGG GGCCCGTCCA AGACTTTCCC
361 CAAGCATGAA ACCAGGCACA TCTCCGATCA TAAGAATGTT GCCAGATGTG CAAAATTTAG
421 TCCTGATGGG AAATATTTTG CAACTGGAAG TGGGGACACA TCCATTAAGT TCTTTGAGGT
481 ATCGAAAATT A
Predicted gene structure (within gDNA segment 11962 to 13678):
Exon 1 12473 12650 ( 178 n); cDNA 44 216 ( 173 n); score: 0.843
Intron 1 12651 12717 ( 67 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.64)
Exon 2 12718 12823 ( 106 n); cDNA 217 324 ( 108 n); score: 0.689
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.82), Pa: 0.000 (s: 0.76)
Exon 3 12921 12990 ( 70 n); cDNA 325 394 ( 70 n); score: 0.757
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.76), Pa: 0.978 (s: 0.88)
Exon 4 13197 13295 ( 99 n); cDNA 395 491 ( 97 n); score: 0.828
MATCH 21326110+ 9661046+ 0.790 453 0.923 C
PGS_21326110+_9661046+ (12473 12650,12718 12823,12921 12990,13197 13295)
Alignment (genomic DNA sequence = upper lines):
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCGC TCATCGTGGC GCACCTCCGT 12532
|||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCCC TCATCGTGGC GCACCTCCGC 103
AGCCAGAACC TCGGGCAGGC CGCAGCCGCC GTCGCCGCCG CCACCATGAC CCCCATCTCC 12592
|||||||| || |||||| ||| ||||| |||||||||| |||||||||| ||||| ||
GACCAGAACC TCACGCAGGC CGCCACCGCC GTCGCCGCCG CCACCATGAC CCCCAAGGCC 163
GCCGCCGAAT CCGTCCCCGC AAATCAACTC CTACGTCTCG TGGCCAAGGT CC-CCCCACT 12651
| |||| | |||| ||| | || || ||| || || |||| | ||||||| || | || |
GACGCC---T CCGT-CCC-C -AACCACCTC CTCCGCCTCG TCGCCAAGGG CCTCGCCGC. 216
TTCCCCTTCC TCCGGCAGTC TGGCCTAGGA TTTGTTCTGC ACGGGCCTAA ACCCTCACTG 12711
.......... .......... .......... .......... .......... .......... 216
TTGGTTCGCA GGGCCTCGCG GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG 12771
|| | | | | | |||| | | |||| ||||| | |||| || |||||||
......CG-A GCGGGAGGAG GCGGCCAGGG GAGGCGGAGC TCCCGCCGCG TTTGACTCCG 269
C--C-GGGTT CGGTGGGGCG GTGCAGCCGC TCGGCTCCAG TGCCGTGGAT TTCAGGTAAA 12828
| | || ||||||| || | || |||| ||||| ||| |||||||||| |||||
CTGCTGGCGG CGGTGGGCCG GCGCGCCCGC TCGGCACCAA TGCCGTGGAT TTCAG..... 324
CCCCAACCTT GCGCCCCCGC GGTGTTGCCT AGTGGCAGTG TTTTTTCTGG TGCTGAACAT 12888
.......... .......... .......... .......... .......... .......... 324
TGGTGAGGAG TGTTGACGCC GGTGCTGTGT AGTATGCAGG ATGTCAAGGG CTCATCCAAG 12948
| ||||| |||| | ||| | | ||||||
.......... .......... .......... ..TGTGCAGA ATGTTAGGGG CCCGTCCAAG 352
AGCTTCCCCA AGCACGAGGC GAAGCATGTC TCTGACCATA AGGTGCTTAT GATTCCAATT 13008
| ||||||| |||| || | | ||| || || || |||| ||
ACTTTCCCCA AGCATGAAAC CAGGCACATC TCCGATCATA AG........ .......... 394
TTCCCTTGCA AATGCACCAC TTGAAAGTTG AAACAATTTT TGTGTCAGAC TCCTGTTTAT 13068
.......... .......... .......... .......... .......... .......... 394
CTGAATATTT ACTACTGCTA TTGCACATTT TGCACTTATC ACAGTACCAT GATTATGTAG 13128
.......... .......... .......... .......... .......... .......... 394
ACAACTTGGG ATTGACCAAC AATAGATTTT ACTGATGTTT ATTGGCTTAC CATTGCATTT 13188
.......... .......... .......... .......... .......... .......... 394
TTCTGTAGAA CGCTGCCCGG TGTGCGAAAT TTAGTCCTGA TGGGAAGTAT TTTGCAACTG 13248
|| | |||| | ||||| |||| |||||||||| |||||| ||| ||||||||||
........AA TGTTGCCAGA TGTGCAAAAT TTAGTCCTGA TGGGAAATAT TTTGCAACTG 446
GGAGTGCTGA TACATCCATT AAGTTTTTTG AGGTGAACTT GAAATTT 13295
| |||| || ||||||||| ||||| |||| |||| | | |||||
GAAGTGGGGA CACATCCATT AAGTTCTTTG AGGT-ATC-G AAAATTA 491
********************************************************************************
EST sequence 10 +strand (File: 9359764+)
1 CGGACGCGTG GGCGGGGGCC GAGAGATGGA CGCGGCGGTG CAGGAGGCGA AGCTGCTGCG
61 GCAGGTGAAC GCCCTCATCG TGGCGCACCT CCGCGACCAG AACCTCACGC AGGCCGCCAC
121 CGCCGTCGCC GCCGCCACCA TGACCCCCAA GGCCGACGCC TCCGCCCCCA ACCACCTCCT
181 CCGCCTCGTC GCCAAAGGCC TCGCGGCCGA GCGGGAGGAG GAGGCTAGGG GAGGCGGATA
241 TCCCGCCGCG TTTGACCCCG CCGCGGTCGC TGCGGGCGGC GGGCTGGCGC GCCCTCTCGG
301 CACCAATGCC GTGGATTTCA GTGTGCAGAA TGTTAGGGGC CCGTCCAAGA CTTTCCCCAA
361 GCATGAAACC AGGCACATCT CCGATCATAA GAATGTTGCC AGATGTGCAA AATTTAGTCC
421 TGATGGGAAA TATTTTGCAA CTGGAAGTGG GGACACA
Predicted gene structure (within gDNA segment 12007 to 13619):
Exon 1 12473 12642 ( 170 n); cDNA 35 198 ( 164 n); score: 0.853
Intron 1 12643 12703 ( 61 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.50)
Exon 2 12704 12823 ( 120 n); cDNA 199 321 ( 123 n); score: 0.558
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.76), Pa: 0.000 (s: 0.76)
Exon 3 12921 12990 ( 70 n); cDNA 322 391 ( 70 n); score: 0.757
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 0.76), Pa: 0.978 (s: 0.88)
Exon 4 13197 13262 ( 66 n); cDNA 392 457 ( 66 n); score: 0.848
MATCH 21326110+ 9359764+ 0.754 426 0.932 C
PGS_21326110+_9359764+ (12473 12642,12704 12823,12921 12990,13197 13262)
Alignment (genomic DNA sequence = upper lines):
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCGC TCATCGTGGC GCACCTCCGT 12532
|||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCCC TCATCGTGGC GCACCTCCGC 94
AGCCAGAACC TCGGGCAGGC CGCAGCCGCC GTCGCCGCCG CCACCATGAC CCCCATCTCC 12592
|||||||| || |||||| ||| ||||| |||||||||| |||||||||| ||||| ||
GACCAGAACC TCACGCAGGC CGCCACCGCC GTCGCCGCCG CCACCATGAC CCCCAAGGCC 154
GCCGCCGAAT CCGTCCCCGC AAATCAACTC CTACGTCTCG TGGCCAAGGT CCCCCCACTT 12652
| |||| | ||| |||| | || || ||| || || |||| | ||||| |
GACGCC---T CCG-CCCC-C -AACCACCTC CTCCGCCTCG TCGCCAAAGG .......... 198
TCCCCTTCCT CCGGCAGTCT GGCCTAGGAT TTGTTCTGCA CGGGCCTAAA CCCTCACTGT 12712
|||| | |
.......... .......... .......... .......... .......... .CCTCGCGGC 207
TGGTTCGCAG GGCCTCGCGG CGGAGGGCGG AGGAGGAGCC GCTTCCGCAT TCGACTCCG- 12771
| | || | || || ||||| | ||| || | | || | | |
CGAGCGGGAG GAGGAGGCTA GGGGAGGCGG ATATCCCGCC GCGTTTGACC CCGCCGCGGT 267
C-C-GGGTTC GGTGGGGCGG TGCAGCCGCT CGGCTCCAGT GCCGTGGATT TCAGGTAAAC 12829
| | | | | || ||| || || || || |||| ||| | |||||||||| ||||
CGCTGCGGGC GGCGGGCTGG CGCGCCCTCT CGGCACCAAT GCCGTGGATT TCAG...... 321
CCCAACCTTG CGCCCCCGCG GTGTTGCCTA GTGGCAGTGT TTTTTCTGGT GCTGAACATT 12889
.......... .......... .......... .......... .......... .......... 321
GGTGAGGAGT GTTGACGCCG GTGCTGTGTA GTATGCAGGA TGTCAAGGGC TCATCCAAGA 12949
| ||||| | ||| | |||| | |||||||
.......... .......... .......... .TGTGCAGAA TGTTAGGGGC CCGTCCAAGA 350
GCTTCCCCAA GCACGAGGCG AAGCATGTCT CTGACCATAA GGTGCTTATG ATTCCAATTT 13009
|||||||| ||| || | | ||| ||| | || ||||| |
CTTTCCCCAA GCATGAAACC AGGCACATCT CCGATCATAA G......... .......... 391
TCCCTTGCAA ATGCACCACT TGAAAGTTGA AACAATTTTT GTGTCAGACT CCTGTTTATC 13069
.......... .......... .......... .......... .......... .......... 391
TGAATATTTA CTACTGCTAT TGCACATTTT GCACTTATCA CAGTACCATG ATTATGTAGA 13129
.......... .......... .......... .......... .......... .......... 391
CAACTTGGGA TTGACCAACA ATAGATTTTA CTGATGTTTA TTGGCTTACC ATTGCATTTT 13189
.......... .......... .......... .......... .......... .......... 391
TCTGTAGAAC GCTGCCCGGT GTGCGAAATT TAGTCCTGAT GGGAAGTATT TTGCAACTGG 13249
|| | |||| | | |||| ||||| |||||||||| ||||| |||| ||||||||||
.......AAT GTTGCCAGAT GTGCAAAATT TAGTCCTGAT GGGAAATATT TTGCAACTGG 444
GAGTGCTGAT ACA 13262
|||| || |||
AAGTGGGGAC ACA 457
********************************************************************************
EST sequence 74 +strand (File: 21935116+)
1 GGAGGACGGA GGGGAGGGCC GAGATGGACG CGGCGGTGCA GGAGGCCAAG CTGCTGCGGC
61 AGGTGAACGC CCTCATCGTG GCGCACCTCC GCGACCAGAA CCTCACGCAG GCCGCCGCCG
121 CCGTCGCCGC CGCCACCATG ACCCCCAAGG CCGACGCCTC CCTCCCCAAC CACCTCCTCC
181 GCCTCGTCGC CAAGGGCCTC GCGGCTGAGC GGGAGGAGGC GGCCAGGGGA GGCGGAGCTC
241 CCCCCGCGTT TGACTCCGCT GGCGGCGGTG GGCTGGCGCG CCCGCTCGGC ACCAGCGCCG
301 TGGATTTCAG TGTGCAGAAT GTCAGGGGCC CG
Predicted gene structure (within gDNA segment 12017 to 13238):
Exon 1 12473 12648 ( 176 n); cDNA 33 202 ( 170 n); score: 0.847
Intron 1 12649 12713 ( 65 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.62)
Exon 2 12714 12823 ( 110 n); cDNA 203 310 ( 108 n); score: 0.718
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 0.80), Pa: 0.000 (s: 0)
Exon 3 12921 12942 ( 22 n); cDNA 311 332 ( 22 n); score: 0.773
MATCH 21326110+ 21935116+ 0.797 308 0.928 C
PGS_21326110+_21935116+ (12473 12648,12714 12823,12921 12942)
Alignment (genomic DNA sequence = upper lines):
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCGC TCATCGTGGC GCACCTCCGT 12532
|||||||||| |||| ||||| |||||||||| |||||||| | |||||||||| |||||||||
GCGGTGCAGG AGGCCAAGCT GCTGCGGCAG GTGAACGCCC TCATCGTGGC GCACCTCCGC 92
AGCCAGAACC TCGGGCAGGC CGCAGCCGCC GTCGCCGCCG CCACCATGAC CCCCATCTCC 12592
|||||||| || |||||| ||| |||||| |||||||||| |||||||||| ||||| ||
GACCAGAACC TCACGCAGGC CGCCGCCGCC GTCGCCGCCG CCACCATGAC CCCCAAGGCC 152
GCCGCCGAAT CCGTCCCCGC AAATCAACTC CTACGTCTCG TGGCCAAGGT CCCCCCACTT 12652
| |||| | || | ||| | || || ||| || || |||| | ||||||| || | |
GACGCC---T CCCT-CCC-C -AACCACCTC CTCCGCCTCG TCGCCAAGGG CCTCGC.... 202
TCCCCTTCCT CCGGCAGTCT GGCCTAGGAT TTGTTCTGCA CGGGCCTAAA CCCTCACTGT 12712
.......... .......... .......... .......... .......... .......... 202
TGGTTCGCAG GGCCTCGCGG CGGAGGGCGG AGGAGGAGCC GCTTCCGCAT TCGACTCCGC 12772
|| | | || | | || ||| | || ||| ||||| | |||| | | ||||||||
.GGCT-G-AG CGGGAGGAGG CGGCCAGGGG AGGCGGAGCT CCCCCCGCGT TTGACTCCGC 259
CGGGTTCGGT GGGGCGGTGC AGCCGCTCGG CTCCAGTGCC GTGGATTTCA GGTAAACCCC 12832
|| |||| ||| || || |||||||| | |||| ||| |||||||||| |
TGGCGGCGGT GGGCTGGCGC GCCCGCTCGG CACCAGCGCC GTGGATTTCA G......... 310
AACCTTGCGC CCCCGCGGTG TTGCCTAGTG GCAGTGTTTT TTCTGGTGCT GAACATTGGT 12892
.......... .......... .......... .......... .......... .......... 310
GAGGAGTGTT GACGCCGGTG CTGTGTAGTA TGCAGGATGT CAAGGGCTCA 12942
| ||||| |||| || |||| |
.......... .......... ........TG TGCAGAATGT CAGGGGCCCG 332
********************************************************************************
EST sequence 60 +strand (File: 14593236+)
1 GCACGAGGCG AATCCGTCCC CGCAAATCAA CTCCTACGTC TCGTGGCCAA GGGCCTCGCG
61 GCGGAGGGCG GAGGAGGAGC CGCTTCCGCA TTCGACTCCG CCGGGTTCGG TGGGGCGGTG
121 CAGCCGCTCG GCTCCAGTGC CGTGGATTTC AGTATGCAGG ATGTCAAGGG CTCATCCAAG
181 AGCTTCCCCA AGCACGAGGC GAAGCATGTC TCTGACCATA AGAACGCTGC CCGGTGTGCG
241 AAATTTAGTC CTGATGGGAA GTATTTTGCA ACTGGGAGTG CTGATACATC CATTAAGTTT
301 TTTGAGGTTG CTAAAATTAA GCAGACTATG GTAGGGGACT CCAAAGATGG TCCTGCCAGG
361 CCTGTGATTC GCACATTTTA TGATCACACA CAGGCCATCA ATGATCTGGA TTTTCATCCT
421 GAGAGTCCAA TACTGATATC AGCTGCAAAA GACAATACAA TAAAATTTTT TGACTTCTCA
481 AAGACCAATG CGAGGAAAGC GTTCAGAGTT ATTCAGGATA CTC
Predicted gene structure (within gDNA segment 12258 to 14497):
Exon 1 12590 12640 ( 51 n); cDNA 1 51 ( 51 n); score: 0.882
Intron 1 12641 12722 ( 82 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 1.00)
Exon 2 12723 12823 ( 101 n); cDNA 52 152 ( 101 n); score: 1.000
Intron 2 12824 12920 ( 97 n); Pd: 0.511 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 3 12921 12990 ( 70 n); cDNA 153 222 ( 70 n); score: 1.000
Intron 3 12991 13196 ( 206 n); Pd: 0.964 (s: 1.00), Pa: 0.978 (s: 1.00)
Exon 4 13197 13280 ( 84 n); cDNA 223 306 ( 84 n); score: 1.000
Intron 4 13281 13380 ( 100 n); Pd: 0.000 (s: 1.00), Pa: 1.000 (s: 1.00)
Exon 5 13381 13467 ( 87 n); cDNA 307 393 ( 87 n); score: 1.000
Intron 5 13468 13886 ( 419 n); Pd: 0.992 (s: 1.00), Pa: 0.939 (s: 1.00)
Exon 6 13887 13957 ( 71 n); cDNA 394 464 ( 71 n); score: 1.000
Intron 6 13958 14109 ( 152 n); Pd: 0.973 (s: 1.00), Pa: 0.989 (s: 1.00)
Exon 7 14110 14161 ( 52 n); cDNA 465 516 ( 52 n); score: 1.000
Intron 7 14162 14253 ( 92 n); Pd: 0.890 (s: 1.00), Pa: 0.830 (s: 0)
Exon 8 14254 14260 ( 7 n); cDNA 517 523 ( 7 n); score: 1.000
MATCH 21326110+ 14593236+ 0.988 523 1.000 C
PGS_21326110+_14593236+ (12590 12640,12723 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14260)
Alignment (genomic DNA sequence = upper lines):
TCCGCCGCCG AATCCGTCCC CGCAAATCAA CTCCTACGTC TCGTGGCCAA GGTCCCCCCA 12649
| | || |||||||||| |||||||||| |||||||||| |||||||||| |
GCACGAGGCG AATCCGTCCC CGCAAATCAA CTCCTACGTC TCGTGGCCAA G......... 51
CTTTCCCCTT CCTCCGGCAG TCTGGCCTAG GATTTGTTCT GCACGGGCCT AAACCCTCAC 12709
.......... .......... .......... .......... .......... .......... 51
TGTTGGTTCG CAGGGCCTCG CGGCGGAGGG CGGAGGAGGA GCCGCTTCCG CATTCGACTC 12769
||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... ...GGCCTCG CGGCGGAGGG CGGAGGAGGA GCCGCTTCCG CATTCGACTC 98
CGCCGGGTTC GGTGGGGCGG TGCAGCCGCT CGGCTCCAGT GCCGTGGATT TCAGGTAAAC 12829
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||
CGCCGGGTTC GGTGGGGCGG TGCAGCCGCT CGGCTCCAGT GCCGTGGATT TCAG...... 152
CCCAACCTTG CGCCCCCGCG GTGTTGCCTA GTGGCAGTGT TTTTTCTGGT GCTGAACATT 12889
.......... .......... .......... .......... .......... .......... 152
GGTGAGGAGT GTTGACGCCG GTGCTGTGTA GTATGCAGGA TGTCAAGGGC TCATCCAAGA 12949
||||||||| |||||||||| ||||||||||
.......... .......... .......... .TATGCAGGA TGTCAAGGGC TCATCCAAGA 181
GCTTCCCCAA GCACGAGGCG AAGCATGTCT CTGACCATAA GGTGCTTATG ATTCCAATTT 13009
|||||||||| |||||||||| |||||||||| |||||||||| |
GCTTCCCCAA GCACGAGGCG AAGCATGTCT CTGACCATAA G......... .......... 222
TCCCTTGCAA ATGCACCACT TGAAAGTTGA AACAATTTTT GTGTCAGACT CCTGTTTATC 13069
.......... .......... .......... .......... .......... .......... 222
TGAATATTTA CTACTGCTAT TGCACATTTT GCACTTATCA CAGTACCATG ATTATGTAGA 13129
.......... .......... .......... .......... .......... .......... 222
CAACTTGGGA TTGACCAACA ATAGATTTTA CTGATGTTTA TTGGCTTACC ATTGCATTTT 13189
.......... .......... .......... .......... .......... .......... 222
TCTGTAGAAC GCTGCCCGGT GTGCGAAATT TAGTCCTGAT GGGAAGTATT TTGCAACTGG 13249
||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......AAC GCTGCCCGGT GTGCGAAATT TAGTCCTGAT GGGAAGTATT TTGCAACTGG 275
GAGTGCTGAT ACATCCATTA AGTTTTTTGA GGTGAACTTG AAATTTGAAT TGCCACTCAG 13309
|||||||||| |||||||||| |||||||||| |
GAGTGCTGAT ACATCCATTA AGTTTTTTGA G......... .......... .......... 306
GTTGCTAGGT GGGGCTTGTG CTGTTTTCTA CTTAGTTGCA ACTTGTAACT CACTATTGCT 13369
.......... .......... .......... .......... .......... .......... 306
CTGTCCTGCA GGTTGCTAAA ATTAAGCAGA CTATGGTAGG GGACTCCAAA GATGGTCCTG 13429
||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .GTTGCTAAA ATTAAGCAGA CTATGGTAGG GGACTCCAAA GATGGTCCTG 355
CCAGGCCTGT GATTCGCACA TTTTATGATC ACACACAGGT GAGCATGTAT TGCTCATATA 13489
|||||||||| |||||||||| |||||||||| ||||||||
CCAGGCCTGT GATTCGCACA TTTTATGATC ACACACAG.. .......... .......... 393
TGACAGTTTA TTTACTCTTC AAGGTCGTGA GACTCTTTTC AACACTTCCA CAAGATTGCC 13549
.......... .......... .......... .......... .......... .......... 393
TCCGAGTTAG GTCTCCTGCA GTATTTTTTT TCCTTTAATA TGCGGAGAGC TGCATATCAT 13609
.......... .......... .......... .......... .......... .......... 393
TGCATTATAG AAAGACTGAA ATACATGGGT AGATCAAATC CACCTGCCAC CACAGACCAC 13669
.......... .......... .......... .......... .......... .......... 393
ACTTATATAC ACACGCTCAA CTCACGTTTA GCACACTGGA TGCACACCTA GCAGCTGCAA 13729
.......... .......... .......... .......... .......... .......... 393
TTTGTAGTTA GATATTTGCT TACTGAGCTG TGTGGAGCAT TGACATGATA TTCAATTTTT 13789
.......... .......... .......... .......... .......... .......... 393
TAATAAACAA CATTTTTTTC CATTTTCACT AGTTTCTACT TCATTTCCCA TTGCTCAAAT 13849
.......... .......... .......... .......... .......... .......... 393
TTCCACTGTG CTCGTAAACA TGATTGATTT CTTGCAGGCC ATCAATGATC TGGATTTTCA 13909
||| |||||||||| ||||||||||
.......... .......... .......... .......GCC ATCAATGATC TGGATTTTCA 416
TCCTGAGAGT CCAATACTGA TATCAGCTGC AAAAGACAAT ACAATAAAGT ATGCTTATCC 13969
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||
TCCTGAGAGT CCAATACTGA TATCAGCTGC AAAAGACAAT ACAATAAA.. .......... 464
TTGATGTCTA CACTCCGTGC TGTTAAATTG TCTATTTGAA GTGCTCATAC TAGGATTAAG 14029
.......... .......... .......... .......... .......... .......... 464
CATGATTTTT TAGGAATTTT TTGCGGTATT AATTGCTATC TGTGTTATTG TTTTGTACAT 14089
.......... .......... .......... .......... .......... .......... 464
GAAAAAATTT TGCTCAACAG ATTTTTTGAC TTCTCAAAGA CCAATGCGAG GAAAGCGTTC 14149
|||||||||| |||||||||| |||||||||| ||||||||||
.......... .......... ATTTTTTGAC TTCTCAAAGA CCAATGCGAG GAAAGCGTTC 504
AGAGTTATTC AGGTTGTAAA TTCTAGCAAT CCAATCTCTC TATATATCAT GTAAAATGGT 14209
|||||||||| ||
AGAGTTATTC AG........ .......... .......... .......... .......... 516
GTGTTCATTG CATTTAACCA GGCTCATTTG TTAATGCTTG GCAGGATACT C 14260
|||||| |
.......... .......... .......... .......... ....GATACT C 523
********************************************************************************
EST sequence 106 -strand (File: 22490341-)
1 ACTCCGCCGG GTTCGGTGTG GCGGTGCAGC CGCCCGGCTC CAGTGCCGTG GATTTCAGTA
61 TTCAGGATGT CAAGGGCTCA TCCAAAAGCT TCCCCAAGCA CGAGGTGAAG CATGTCTCTG
121 ACCATAAGAA CGCTGCCCGG TGTGTGAAAT TTAGTCCTGA TGGAAAGTAT TTTGCAACTG
181 GGAGTGCTGA TACATCCATT AAGTTTTTTG AGGTTGCTAA GATTAAGCAG ACTATGGTAG
241 GAGACTCTAA AGATGGCCCT GCCAGGCCTG TGATACGGAC ATTTTATGAT CACACACAGG
301 CCATCAATGA TCTGGATTTT CATCCTGAGA GTCCAATACT GATATCAGCT GCAAAAGACA
361 GTACAATAAG ATTCTTTGAC TTTTCAAAAA CCAATGCGAG GAAAGCGTTC AGAGTTATTC
421 AGGATACTCA TAATGTTAGA TCTGTATGTT TTCATCCTTG TGGGGATTTC CTTTTAGCAG
481 GGACTGATCA CCCAGTCGCT CATTTATATG ATATAAATAC TTTTACATGC TACTTATCAG
541 CAAATGCACA GGATTCTAGT TCTCCCCGAC AGCAACG
Predicted gene structure (within gDNA segment 12461 to 15125):
Exon 1 12766 12823 ( 58 n); cDNA 1 58 ( 58 n); score: 0.966
Intron 1 12824 12920 ( 97 n); Pd: 0.511 (s: 0.96), Pa: 0.000 (s: 0.94)
Exon 2 12921 12990 ( 70 n); cDNA 59 128 ( 70 n); score: 0.957
Intron 2 12991 13196 ( 206 n); Pd: 0.964 (s: 0.96), Pa: 0.978 (s: 0.96)
Exon 3 13197 13280 ( 84 n); cDNA 129 212 ( 84 n); score: 0.976
Intron 3 13281 13380 ( 100 n); Pd: 0.000 (s: 0.98), Pa: 1.000 (s: 0.92)
Exon 4 13381 13467 ( 87 n); cDNA 213 299 ( 87 n); score: 0.931
Intron 4 13468 13886 ( 419 n); Pd: 0.992 (s: 0.94), Pa: 0.939 (s: 1.00)
Exon 5 13887 13957 ( 71 n); cDNA 300 370 ( 71 n); score: 0.972
Intron 5 13958 14109 ( 152 n); Pd: 0.973 (s: 0.96), Pa: 0.989 (s: 0.94)
Exon 6 14110 14161 ( 52 n); cDNA 371 422 ( 52 n); score: 0.942
Intron 6 14162 14253 ( 92 n); Pd: 0.890 (s: 0.94), Pa: 0.830 (s: 0.98)
Exon 7 14254 14311 ( 58 n); cDNA 423 480 ( 58 n); score: 0.983
Intron 7 14312 14684 ( 373 n); Pd: 0.979 (s: 0.98), Pa: 0.910 (s: 0.98)
Exon 8 14685 14779 ( 95 n); cDNA 481 575 ( 95 n); score: 0.926
MATCH 21326110+ 22490341- 0.955 575 0.997 C
PGS_21326110+_22490341- (12766 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779)
Alignment (genomic DNA sequence = upper lines):
ACTCCGCCGG GTTCGGTGGG GCGGTGCAGC CGCTCGGCTC CAGTGCCGTG GATTTCAGGT 12825
|||||||||| |||||||| | |||||||||| ||| |||||| |||||||||| ||||||||
ACTCCGCCGG GTTCGGTGTG GCGGTGCAGC CGCCCGGCTC CAGTGCCGTG GATTTCAG.. 58
AAACCCCAAC CTTGCGCCCC CGCGGTGTTG CCTAGTGGCA GTGTTTTTTC TGGTGCTGAA 12885
.......... .......... .......... .......... .......... .......... 58
CATTGGTGAG GAGTGTTGAC GCCGGTGCTG TGTAGTATGC AGGATGTCAA GGGCTCATCC 12945
||| | |||||||||| ||||||||||
.......... .......... .......... .....TATTC AGGATGTCAA GGGCTCATCC 83
AAGAGCTTCC CCAAGCACGA GGCGAAGCAT GTCTCTGACC ATAAGGTGCT TATGATTCCA 13005
|| ||||||| |||||||||| || ||||||| |||||||||| |||||
AAAAGCTTCC CCAAGCACGA GGTGAAGCAT GTCTCTGACC ATAAG..... .......... 128
ATTTTCCCTT GCAAATGCAC CACTTGAAAG TTGAAACAAT TTTTGTGTCA GACTCCTGTT 13065
.......... .......... .......... .......... .......... .......... 128
TATCTGAATA TTTACTACTG CTATTGCACA TTTTGCACTT ATCACAGTAC CATGATTATG 13125
.......... .......... .......... .......... .......... .......... 128
TAGACAACTT GGGATTGACC AACAATAGAT TTTACTGATG TTTATTGGCT TACCATTGCA 13185
.......... .......... .......... .......... .......... .......... 128
TTTTTCTGTA GAACGCTGCC CGGTGTGCGA AATTTAGTCC TGATGGGAAG TATTTTGCAA 13245
||||||||| ||||||| || |||||||||| |||||| ||| ||||||||||
.......... .AACGCTGCC CGGTGTGTGA AATTTAGTCC TGATGGAAAG TATTTTGCAA 177
CTGGGAGTGC TGATACATCC ATTAAGTTTT TTGAGGTGAA CTTGAAATTT GAATTGCCAC 13305
|||||||||| |||||||||| |||||||||| |||||
CTGGGAGTGC TGATACATCC ATTAAGTTTT TTGAG..... .......... .......... 212
TCAGGTTGCT AGGTGGGGCT TGTGCTGTTT TCTACTTAGT TGCAACTTGT AACTCACTAT 13365
.......... .......... .......... .......... .......... .......... 212
TGCTCTGTCC TGCAGGTTGC TAAAATTAAG CAGACTATGG TAGGGGACTC CAAAGATGGT 13425
||||| ||| |||||| |||||||||| |||| ||||| ||||||||
.......... .....GTTGC TAAGATTAAG CAGACTATGG TAGGAGACTC TAAAGATGGC 257
CCTGCCAGGC CTGTGATTCG CACATTTTAT GATCACACAC AGGTGAGCAT GTATTGCTCA 13485
|||||||||| ||||||| || ||||||||| |||||||||| ||
CCTGCCAGGC CTGTGATACG GACATTTTAT GATCACACAC AG........ .......... 299
TATATGACAG TTTATTTACT CTTCAAGGTC GTGAGACTCT TTTCAACACT TCCACAAGAT 13545
.......... .......... .......... .......... .......... .......... 299
TGCCTCCGAG TTAGGTCTCC TGCAGTATTT TTTTTCCTTT AATATGCGGA GAGCTGCATA 13605
.......... .......... .......... .......... .......... .......... 299
TCATTGCATT ATAGAAAGAC TGAAATACAT GGGTAGATCA AATCCACCTG CCACCACAGA 13665
.......... .......... .......... .......... .......... .......... 299
CCACACTTAT ATACACACGC TCAACTCACG TTTAGCACAC TGGATGCACA CCTAGCAGCT 13725
.......... .......... .......... .......... .......... .......... 299
GCAATTTGTA GTTAGATATT TGCTTACTGA GCTGTGTGGA GCATTGACAT GATATTCAAT 13785
.......... .......... .......... .......... .......... .......... 299
TTTTTAATAA ACAACATTTT TTTCCATTTT CACTAGTTTC TACTTCATTT CCCATTGCTC 13845
.......... .......... .......... .......... .......... .......... 299
AAATTTCCAC TGTGCTCGTA AACATGATTG ATTTCTTGCA GGCCATCAAT GATCTGGATT 13905
||||||||| ||||||||||
.......... .......... .......... .......... .GCCATCAAT GATCTGGATT 318
TTCATCCTGA GAGTCCAATA CTGATATCAG CTGCAAAAGA CAATACAATA AAGTATGCTT 13965
|||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |
TTCATCCTGA GAGTCCAATA CTGATATCAG CTGCAAAAGA CAGTACAATA AG........ 370
ATCCTTGATG TCTACACTCC GTGCTGTTAA ATTGTCTATT TGAAGTGCTC ATACTAGGAT 14025
.......... .......... .......... .......... .......... .......... 370
TAAGCATGAT TTTTTAGGAA TTTTTTGCGG TATTAATTGC TATCTGTGTT ATTGTTTTGT 14085
.......... .......... .......... .......... .......... .......... 370
ACATGAAAAA ATTTTGCTCA ACAGATTTTT TGACTTCTCA AAGACCAATG CGAGGAAAGC 14145
||| || |||||| ||| || ||||||| ||||||||||
.......... .......... ....ATTCTT TGACTTTTCA AAAACCAATG CGAGGAAAGC 406
GTTCAGAGTT ATTCAGGTTG TAAATTCTAG CAATCCAATC TCTCTATATA TCATGTAAAA 14205
|||||||||| ||||||
GTTCAGAGTT ATTCAG.... .......... .......... .......... .......... 422
TGGTGTGTTC ATTGCATTTA ACCAGGCTCA TTTGTTAATG CTTGGCAGGA TACTCATAAT 14265
|| ||||||||||
.......... .......... .......... .......... ........GA TACTCATAAT 434
GTTAGATCTG TATGTTTTCA TCCTTGTGGG GATTACCTTT TAGCAGGTAC TATGATCTTT 14325
|||||||||| |||||||||| |||||||||| |||| ||||| ||||||
GTTAGATCTG TATGTTTTCA TCCTTGTGGG GATTTCCTTT TAGCAG.... .......... 480
TCACTAAATT TAAATTTGAT TTCTAGTTCT GCTGTGATTA ACTGATTCTT GATGTCTGAT 14385
.......... .......... .......... .......... .......... .......... 480
ATCAGTTTGA TATGCTCTGA TTTTTATGCA TTATAAGTTG TTAACATGTT TTCAGTTGTT 14445
.......... .......... .......... .......... .......... .......... 480
ATCTGTAAAG TAATTTAATC ATTTCACCAA AACAATTTGA TATTTGGGCT TAAGAATTTG 14505
.......... .......... .......... .......... .......... .......... 480
GATTTCGTTC CTGGATCAAC AGTTTCTGTC TCGTGGGCAT TTGAAAAATA CTGCAAGCAT 14565
.......... .......... .......... .......... .......... .......... 480
ATCGTATGGA ATTTTCTTCT TACATATAGT CAAATATTAA CATTCAAATA TGTATTTTTT 14625
.......... .......... .......... .......... .......... .......... 480
TTAAAAAAAC TCATTTTCAT ATATTTGGAA GCAAGTGACA CTGATAAAAT TATTTGCAGG 14685
|
.......... .......... .......... .......... .......... .........G 481
GACTGATCAC CCAGTTGCTC ATTTATATGA TATAAATACT TTTACATGCT ACTTATCAGC 14745
|||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ||||||||||
GACTGATCAC CCAGTCGCTC ATTTATATGA TATAAATACT TTTACATGCT ACTTATCAGC 541
AAATGCACAG GATTCTAGTT CTCCCATTAA CCAG 14779
|||||||||| |||||||||| ||||| | ||
AAATGCACAG GATTCTAGTT CTCCCCGACA GCAA 575
********************************************************************************
EST sequence 65 +strand (File: 9410872+)
1 GNCGCGCCCG CTCGGCACCA GCGCCGTGGA TTTCANTGTG CAGAATGTCA GGGGCCCGTC
61 CAAGACTTTC CCCAAGCACG AGACCAGGCA CATCTCCGAT CATAAGAATG TTGCCAGATG
121 TGCGAAATTT AGTCCTGATG GGAAACATTT TGCAACTGGA AGTGGGGACA CATCCATTAA
181 GTTCTTTGAG GTATCAAAAA TTAAGCAGAC GATGTTAGGA GACTCCAAAG AAGGCCCTGG
241 CCGACCTGTG GTCCGTACAT TTTATGACCA TGTGCAGCCC ATCAATGATC TGGATTTCCA
301 TCCTATTAGC CCAATACTGA TATCTGCAGC AAAAGATAAT ACGATAAAGT TCTTTGAGTT
361 CTCCAAAACT GCTGCAAGAA AAGCATTCAG AGTTATTCAG GATACTCATA ATGTTAGGTC
421 TGTATGTTTT CATCCTTGCG GTGATTACAT TTTAGCAGGG ACTGATCACC CAGTAGCTCA
481 TCTCTATGAT GTAAACACTT TCACATGCTT CTTATCCGCA AATCCGCAGG ACTCTAGTGC
541 TGCCATCAAC CAGGTGCGCT CTCGGGTACT GGGAGCATGT ATGTGACTGC TTCTAAGGAT
601 GGTTCTCTGC GCATCTGGGA TGGAGTATCT GCTGAATGTG TTCGTCCCAT AATTGGGGCA
661 CATGGATCTG TAGAAGCTAC TAGTGCAATT TCACCAAAGA CGAGAGGTAC TCCTATCCAG
721 TGGGAAGGAT TCGTGTATAA AGTTATGGGN AAGTTGGCAC
Predicted gene structure (within gDNA segment 12400 to 15700):
Exon 1 12788 12823 ( 36 n); cDNA 1 36 ( 36 n); score: 0.806
Intron 1 12824 12920 ( 97 n); Pd: 0.511 (s: 0), Pa: 0.000 (s: 0.82)
Exon 2 12921 12990 ( 70 n); cDNA 37 106 ( 70 n); score: 0.800
Intron 2 12991 13196 ( 206 n); Pd: 0.964 (s: 0.80), Pa: 0.978 (s: 0.88)
Exon 3 13197 13280 ( 84 n); cDNA 107 190 ( 84 n); score: 0.869
Intron 3 13281 13380 ( 100 n); Pd: 0.000 (s: 0.86), Pa: 1.000 (s: 0.82)
Exon 4 13381 13467 ( 87 n); cDNA 191 277 ( 87 n); score: 0.782
Intron 4 13468 13886 ( 419 n); Pd: 0.992 (s: 0.74), Pa: 0.939 (s: 0.86)
Exon 5 13887 13957 ( 71 n); cDNA 278 348 ( 71 n); score: 0.859
Intron 5 13958 14109 ( 152 n); Pd: 0.973 (s: 0.84), Pa: 0.989 (s: 0.78)
Exon 6 14110 14161 ( 52 n); cDNA 349 400 ( 52 n); score: 0.788
Intron 6 14162 14253 ( 92 n); Pd: 0.890 (s: 0.80), Pa: 0.830 (s: 0.92)
Exon 7 14254 14311 ( 58 n); cDNA 401 458 ( 58 n); score: 0.931
Intron 7 14312 14684 ( 373 n); Pd: 0.979 (s: 0.92), Pa: 0.910 (s: 0.88)
Exon 8 14685 14779 ( 95 n); cDNA 459 553 ( 95 n); score: 0.853
Intron 8 14780 14879 ( 100 n); Pd: 0.995 (s: 0.84), Pa: 0.000 (s: 0.88)
Exon 9 14880 15034 ( 155 n); cDNA 554 706 ( 153 n); score: 0.897
Intron 9 15035 15519 ( 485 n); Pd: 0.794 (s: 0.90), Pa: 0.933 (s: 0.80)
Exon 10 15520 15573 ( 54 n); cDNA 707 760 ( 54 n); score: 0.815
MATCH 21326110+ 9410872+ 0.850 762 1.003 C
PGS_21326110+_9410872+ (12788 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15034,15520 15573)
Alignment (genomic DNA sequence = upper lines):
GGTGCAGCCG CTCGGCTCCA GTGCCGTGGA TTTCAGGTAA ACCCCAACCT TGCGCCCCCG 12847
| || ||| |||||| ||| | |||||||| |||||
GNCGCGCCCG CTCGGCACCA GCGCCGTGGA TTTCAN.... .......... .......... 36
CGGTGTTGCC TAGTGGCAGT GTTTTTTCTG GTGCTGAACA TTGGTGAGGA GTGTTGACGC 12907
.......... .......... .......... .......... .......... .......... 36
CGGTGCTGTG TAGTATGCAG GATGTCAAGG GCTCATCCAA GAGCTTCCCC AAGCACGAGG 12967
| ||||| |||||| || || | ||||| || |||||| |||||||||
.......... ...TGTGCAG AATGTCAGGG GCCCGTCCAA GACTTTCCCC AAGCACGAGA 83
CGAAGCATGT CTCTGACCAT AAGGTGCTTA TGATTCCAAT TTTCCCTTGC AAATGCACCA 13027
| | ||| | ||| || ||| |||
CCAGGCACAT CTCCGATCAT AAG....... .......... .......... .......... 106
CTTGAAAGTT GAAACAATTT TTGTGTCAGA CTCCTGTTTA TCTGAATATT TACTACTGCT 13087
.......... .......... .......... .......... .......... .......... 106
ATTGCACATT TTGCACTTAT CACAGTACCA TGATTATGTA GACAACTTGG GATTGACCAA 13147
.......... .......... .......... .......... .......... .......... 106
CAATAGATTT TACTGATGTT TATTGGCTTA CCATTGCATT TTTCTGTAGA ACGCTGCCCG 13207
| | | |||| |
.......... .......... .......... .......... .........A ATGTTGCCAG 117
GTGTGCGAAA TTTAGTCCTG ATGGGAAGTA TTTTGCAACT GGGAGTGCTG ATACATCCAT 13267
||||||||| |||||||||| ||||||| | |||||||||| || |||| | | ||||||||
ATGTGCGAAA TTTAGTCCTG ATGGGAAACA TTTTGCAACT GGAAGTGGGG ACACATCCAT 177
TAAGTTTTTT GAGGTGAACT TGAAATTTGA ATTGCCACTC AGGTTGCTAG GTGGGGCTTG 13327
|||||| ||| |||
TAAGTTCTTT GAG....... .......... .......... .......... .......... 190
TGCTGTTTTC TACTTAGTTG CAACTTGTAA CTCACTATTG CTCTGTCCTG CAGGTTGCTA 13387
|| | |
.......... .......... .......... .......... .......... ...GTATCAA 197
AAATTAAGCA GACTATGGTA GGGGACTCCA AAGATGGTCC TGCCAGGCCT GTGATTCGCA 13447
|||||||||| ||| ||| || || ||||||| |||| || || || | | ||| ||| | || |
AAATTAAGCA GACGATGTTA GGAGACTCCA AAGAAGGCCC TGGCCGACCT GTGGTCCGTA 257
CATTTTATGA TCACACACAG GTGAGCATGT ATTGCTCATA TATGACAGTT TATTTACTCT 13507
|||||||||| || |||
CATTTTATGA CCATGTGCAG .......... .......... .......... .......... 277
TCAAGGTCGT GAGACTCTTT TCAACACTTC CACAAGATTG CCTCCGAGTT AGGTCTCCTG 13567
.......... .......... .......... .......... .......... .......... 277
CAGTATTTTT TTTCCTTTAA TATGCGGAGA GCTGCATATC ATTGCATTAT AGAAAGACTG 13627
.......... .......... .......... .......... .......... .......... 277
AAATACATGG GTAGATCAAA TCCACCTGCC ACCACAGACC ACACTTATAT ACACACGCTC 13687
.......... .......... .......... .......... .......... .......... 277
AACTCACGTT TAGCACACTG GATGCACACC TAGCAGCTGC AATTTGTAGT TAGATATTTG 13747
.......... .......... .......... .......... .......... .......... 277
CTTACTGAGC TGTGTGGAGC ATTGACATGA TATTCAATTT TTTAATAAAC AACATTTTTT 13807
.......... .......... .......... .......... .......... .......... 277
TCCATTTTCA CTAGTTTCTA CTTCATTTCC CATTGCTCAA ATTTCCACTG TGCTCGTAAA 13867
.......... .......... .......... .......... .......... .......... 277
CATGATTGAT TTCTTGCAGG CCATCAATGA TCTGGATTTT CATCCTGAGA GTCCAATACT 13927
|||||||||| ||||||||| |||||| | | ||||||||
.......... .........C CCATCAATGA TCTGGATTTC CATCCTATTA GCCCAATACT 318
GATATCAGCT GCAAAAGACA ATACAATAAA GTATGCTTAT CCTTGATGTC TACACTCCGT 13987
|||||| || |||||||| | |||| |||||
GATATCTGCA GCAAAAGATA ATACGATAAA .......... .......... .......... 348
GCTGTTAAAT TGTCTATTTG AAGTGCTCAT ACTAGGATTA AGCATGATTT TTTAGGAATT 14047
.......... .......... .......... .......... .......... .......... 348
TTTTGCGGTA TTAATTGCTA TCTGTGTTAT TGTTTTGTAC ATGAAAAAAT TTTGCTCAAC 14107
.......... .......... .......... .......... .......... .......... 348
AGATTTTTTG ACTTCTCAAA GACCAATGCG AGGAAAGCGT TCAGAGTTAT TCAGGTTGTA 14167
|| |||| | ||||| || || ||| || ||||| | |||||||||| ||||
..GTTCTTTG AGTTCTCCAA AACTGCTGCA AGAAAAGCAT TCAGAGTTAT TCAG...... 400
AATTCTAGCA ATCCAATCTC TCTATATATC ATGTAAAATG GTGTGTTCAT TGCATTTAAC 14227
.......... .......... .......... .......... .......... .......... 400
CAGGCTCATT TGTTAATGCT TGGCAGGATA CTCATAATGT TAGATCTGTA TGTTTTCATC 14287
|||| |||||||||| ||| |||||| ||||||||||
.......... .......... ......GATA CTCATAATGT TAGGTCTGTA TGTTTTCATC 434
CTTGTGGGGA TTACCTTTTA GCAGGTACTA TGATCTTTTC ACTAAATTTA AATTTGATTT 14347
|||| || || |||| ||||| ||||
CTTGCGGTGA TTACATTTTA GCAG...... .......... .......... .......... 458
CTAGTTCTGC TGTGATTAAC TGATTCTTGA TGTCTGATAT CAGTTTGATA TGCTCTGATT 14407
.......... .......... .......... .......... .......... .......... 458
TTTATGCATT ATAAGTTGTT AACATGTTTT CAGTTGTTAT CTGTAAAGTA ATTTAATCAT 14467
.......... .......... .......... .......... .......... .......... 458
TTCACCAAAA CAATTTGATA TTTGGGCTTA AGAATTTGGA TTTCGTTCCT GGATCAACAG 14527
.......... .......... .......... .......... .......... .......... 458
TTTCTGTCTC GTGGGCATTT GAAAAATACT GCAAGCATAT CGTATGGAAT TTTCTTCTTA 14587
.......... .......... .......... .......... .......... .......... 458
CATATAGTCA AATATTAACA TTCAAATATG TATTTTTTTT AAAAAAACTC ATTTTCATAT 14647
.......... .......... .......... .......... .......... .......... 458
ATTTGGAAGC AAGTGACACT GATAAAATTA TTTGCAGGGA CTGATCACCC AGTTGCTCAT 14707
||| |||||||||| ||| ||||||
.......... .......... .......... .......GGA CTGATCACCC AGTAGCTCAT 481
TTATATGATA TAAATACTTT TACATGCTAC TTATCAGCAA ATGCACAGGA TTCTAGTTCT 14767
| |||||| |||| ||||| ||||||| | ||||| |||| || | ||||| |||||| ||
CTCTATGATG TAAACACTTT CACATGCTTC TTATCCGCAA ATCCGCAGGA CTCTAGTGCT 541
CCCATTAACC AGGTAGCTTT TCTCTTTCCT TCTGATTCAC AAGCATTAGA TTGCATTGGT 14827
|||| |||| ||
GCCATCAACC AG........ .......... .......... .......... .......... 553
TATATTCTCA TCAAAGTTCT CCGCCAGCCA TGCTTACTGA TGTTGCTGCC AGGTACGCTA 14887
|| ||||
.......... .......... .......... .......... .......... ..GTGCGCT- 560
CTCCTGTACT GGGAGCTTGT ATGTGACTGC TTCTAAAGAT GGTTCTCTGC GCATTTGGGA 14947
||| ||||| |||||| ||| |||||||||| |||||| ||| |||||||||| |||| |||||
CTCGGGTACT GGGAGCATGT ATGTGACTGC TTCTAAGGAT GGTTCTCTGC GCATCTGGGA 620
TGGAGTATCT GCTGAATGTG TTCGACCTAT TATTGGAGCA CATGGATCTG CAGAAGCTAC 15007
|||||||||| |||||||||| |||| || || ||||| ||| |||||||||| |||||||||
TGGAGTATCT GCTGAATGTG TTCGTCCCAT AATTGGGGCA CATGGATCTG TAGAAGCTAC 680
TAGCGCAATT TTCACCAGAG ATGAGAGGTA AGCGAGCTAC CAGCATGTCT AAGGTGCTCT 15067
||| |||| | ||||||| || | |||||
TAGTGCAA-T TTCACCAAAG ACGAGAG... .......... .......... .......... 706
TCCCTCAAGA TAAAATCCAG TCATTGTTTG GTTTGAAGAA CAGAGAGAAA GGCATATGCT 15127
.......... .......... .......... .......... .......... .......... 706
GTATGATTCA AGACAGTAAC TACTTCAAAC CCTGTTTGGA ATGTGGGAAT CTTGTAGTGA 15187
.......... .......... .......... .......... .......... .......... 706
TTCTGAATGA TTTATAACAT GTCCTGGATA ATTTCCTGTG TTTCAGACGT GTCGTAACTT 15247
.......... .......... .......... .......... .......... .......... 706
TATAACACGA ATAACTCTTT CTCCTTTACC CTACTATTTC ACCACTAAAC AACTAACTTG 15307
.......... .......... .......... .......... .......... .......... 706
CCTATAAACA CTTTTTAGAC TTCTTCTGAA AGGCCTAGTG TTTATGTGGT TATATGCAGC 15367
.......... .......... .......... .......... .......... .......... 706
GTGAATGCAC TTGCATATAA GATTGATCTA AAAAATTGAT GTAGTGAACT TTGACTACCC 15427
.......... .......... .......... .......... .......... .......... 706
GAAGTATATG CTTAGATAGT TCATGGATTT CTTTCATAAA ACTGCACACT GTATTCTGGT 15487
.......... .......... .......... .......... .......... .......... 706
TATCTGTTAT GAAGTTTACT ACGTTCTTTC AGGTATGTCC TATCTTGTGG GAAAGATTCT 15547
||| ||| |||| |||| ||| |||||
.......... .......... .......... ..GTA-CTCC TATCCAGTGG GAAGGATTCG 733
TGTGTCAAGT TATGGG-AAG TTGGCAC 15573
||| | |||| |||||| ||| |||||||
TGTATAAAGT TATGGGNAAG TTGGCAC 760
********************************************************************************
EST sequence 68 +strand (File: 12030559+)
1 CGCGCCCGCT CGGCACCAGC GCCGTGGATT TCANTGTGCA GAATGTCAGG GGCCCGTCCA
61 AGACTTTCCC CAAGCACGAG ACCAGGCACA TCTCCGATCA TAAGAATGTT GCCAGATGTG
121 CGAAATTTAG TCCTGATGGG AAACATTTTG CAACTGGAAG TGGGGACACA TCCATTAAGT
181 TCTTTGAGGT ATCAAAAATT AAGCAGACGA TGTTAGGAGA CTCCAAAGAA GGCCCTGGCC
241 GACCTGTGGT CCGTACATTT TATGACCATG TGCAGCCCAT CAATGATCTG GATTTCCATC
301 CTATTAGCCC AATACTGATA TCTGCAGCAA AAGATAATAC GATAAAGTTC TTTGAGTTCT
361 CCAAAACTGC TGCAAGAAAA GCATTCAGAG TTATTCAGGA TACTCATAAT GTTAGGTCTG
421 TATGTTTTCA TCCTTGCGGT GATTACATTT TAGCAGGGAC TGATCACCCA GTAGCTCATC
481 TCTATGATGT AAACACTTTC ACATGCTTCT TATCCGCAAA TCCGCAGGAC TCTAGTGCTG
541 CCATCAACCA GGTGCGCTCT CGGGTACTGG GAGCATGTAT GTGACTGCTT CTAAGGATGG
601 TTCTCTGCGC ATCTGGGATG GAGTATCTGC TGAATGTGTT CGTCCCATAA TTGGGGCACA
661 TGGATCTGTA GAAGCTACTA GTGCAATTTC ACCAAAGACG
Predicted gene structure (within gDNA segment 12410 to 15410):
Exon 1 12790 12823 ( 34 n); cDNA 1 34 ( 34 n); score: 0.824
Intron 1 12824 12920 ( 97 n); Pd: 0.511 (s: 0), Pa: 0.000 (s: 0.82)
Exon 2 12921 12990 ( 70 n); cDNA 35 104 ( 70 n); score: 0.800
Intron 2 12991 13196 ( 206 n); Pd: 0.964 (s: 0.80), Pa: 0.978 (s: 0.88)
Exon 3 13197 13280 ( 84 n); cDNA 105 188 ( 84 n); score: 0.869
Intron 3 13281 13380 ( 100 n); Pd: 0.000 (s: 0.86), Pa: 1.000 (s: 0.82)
Exon 4 13381 13467 ( 87 n); cDNA 189 275 ( 87 n); score: 0.782
Intron 4 13468 13886 ( 419 n); Pd: 0.992 (s: 0.74), Pa: 0.939 (s: 0.86)
Exon 5 13887 13957 ( 71 n); cDNA 276 346 ( 71 n); score: 0.859
Intron 5 13958 14109 ( 152 n); Pd: 0.973 (s: 0.84), Pa: 0.989 (s: 0.78)
Exon 6 14110 14161 ( 52 n); cDNA 347 398 ( 52 n); score: 0.788
Intron 6 14162 14253 ( 92 n); Pd: 0.890 (s: 0.80), Pa: 0.830 (s: 0.92)
Exon 7 14254 14311 ( 58 n); cDNA 399 456 ( 58 n); score: 0.931
Intron 7 14312 14684 ( 373 n); Pd: 0.979 (s: 0.92), Pa: 0.910 (s: 0.88)
Exon 8 14685 14779 ( 95 n); cDNA 457 551 ( 95 n); score: 0.853
Intron 8 14780 14879 ( 100 n); Pd: 0.995 (s: 0.84), Pa: 0.000 (s: 0.88)
Exon 9 14880 15030 ( 151 n); cDNA 552 700 ( 149 n); score: 0.894
MATCH 21326110+ 12030559+ 0.852 702 1.003 C
PGS_21326110+_12030559+ (12790 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15030)
Alignment (genomic DNA sequence = upper lines):
TGCAGCCGCT CGGCTCCAGT GCCGTGGATT TCAGGTAAAC CCCAACCTTG CGCCCCCGCG 12849
|| ||||| |||| |||| |||||||||| |||
CGCGCCCGCT CGGCACCAGC GCCGTGGATT TCAN...... .......... .......... 34
GTGTTGCCTA GTGGCAGTGT TTTTTCTGGT GCTGAACATT GGTGAGGAGT GTTGACGCCG 12909
.......... .......... .......... .......... .......... .......... 34
GTGCTGTGTA GTATGCAGGA TGTCAAGGGC TCATCCAAGA GCTTCCCCAA GCACGAGGCG 12969
| ||||| | ||||| |||| | ||||||| |||||||| ||||||| |
.......... .TGTGCAGAA TGTCAGGGGC CCGTCCAAGA CTTTCCCCAA GCACGAGACC 83
AAGCATGTCT CTGACCATAA GGTGCTTATG ATTCCAATTT TCCCTTGCAA ATGCACCACT 13029
| ||| ||| | || ||||| |
AGGCACATCT CCGATCATAA G......... .......... .......... .......... 104
TGAAAGTTGA AACAATTTTT GTGTCAGACT CCTGTTTATC TGAATATTTA CTACTGCTAT 13089
.......... .......... .......... .......... .......... .......... 104
TGCACATTTT GCACTTATCA CAGTACCATG ATTATGTAGA CAACTTGGGA TTGACCAACA 13149
.......... .......... .......... .......... .......... .......... 104
ATAGATTTTA CTGATGTTTA TTGGCTTACC ATTGCATTTT TCTGTAGAAC GCTGCCCGGT 13209
|| | |||| | |
.......... .......... .......... .......... .......AAT GTTGCCAGAT 117
GTGCGAAATT TAGTCCTGAT GGGAAGTATT TTGCAACTGG GAGTGCTGAT ACATCCATTA 13269
|||||||||| |||||||||| ||||| ||| |||||||||| |||| || ||||||||||
GTGCGAAATT TAGTCCTGAT GGGAAACATT TTGCAACTGG AAGTGGGGAC ACATCCATTA 177
AGTTTTTTGA GGTGAACTTG AAATTTGAAT TGCCACTCAG GTTGCTAGGT GGGGCTTGTG 13329
|||| ||||| |
AGTTCTTTGA G......... .......... .......... .......... .......... 188
CTGTTTTCTA CTTAGTTGCA ACTTGTAACT CACTATTGCT CTGTCCTGCA GGTTGCTAAA 13389
|| | |||
.......... .......... .......... .......... .......... .GTATCAAAA 197
ATTAAGCAGA CTATGGTAGG GGACTCCAAA GATGGTCCTG CCAGGCCTGT GATTCGCACA 13449
|||||||||| | ||| |||| ||||||||| || || |||| | | ||||| | | || |||
ATTAAGCAGA CGATGTTAGG AGACTCCAAA GAAGGCCCTG GCCGACCTGT GGTCCGTACA 257
TTTTATGATC ACACACAGGT GAGCATGTAT TGCTCATATA TGACAGTTTA TTTACTCTTC 13509
|||||||| | | |||
TTTTATGACC ATGTGCAG.. .......... .......... .......... .......... 275
AAGGTCGTGA GACTCTTTTC AACACTTCCA CAAGATTGCC TCCGAGTTAG GTCTCCTGCA 13569
.......... .......... .......... .......... .......... .......... 275
GTATTTTTTT TCCTTTAATA TGCGGAGAGC TGCATATCAT TGCATTATAG AAAGACTGAA 13629
.......... .......... .......... .......... .......... .......... 275
ATACATGGGT AGATCAAATC CACCTGCCAC CACAGACCAC ACTTATATAC ACACGCTCAA 13689
.......... .......... .......... .......... .......... .......... 275
CTCACGTTTA GCACACTGGA TGCACACCTA GCAGCTGCAA TTTGTAGTTA GATATTTGCT 13749
.......... .......... .......... .......... .......... .......... 275
TACTGAGCTG TGTGGAGCAT TGACATGATA TTCAATTTTT TAATAAACAA CATTTTTTTC 13809
.......... .......... .......... .......... .......... .......... 275
CATTTTCACT AGTTTCTACT TCATTTCCCA TTGCTCAAAT TTCCACTGTG CTCGTAAACA 13869
.......... .......... .......... .......... .......... .......... 275
TGATTGATTT CTTGCAGGCC ATCAATGATC TGGATTTTCA TCCTGAGAGT CCAATACTGA 13929
|| |||||||||| ||||||| || |||| || ||||||||||
.......... .......CCC ATCAATGATC TGGATTTCCA TCCTATTAGC CCAATACTGA 318
TATCAGCTGC AAAAGACAAT ACAATAAAGT ATGCTTATCC TTGATGTCTA CACTCCGTGC 13989
|||| || || |||||| ||| || |||||
TATCTGCAGC AAAAGATAAT ACGATAAA.. .......... .......... .......... 346
TGTTAAATTG TCTATTTGAA GTGCTCATAC TAGGATTAAG CATGATTTTT TAGGAATTTT 14049
.......... .......... .......... .......... .......... .......... 346
TTGCGGTATT AATTGCTATC TGTGTTATTG TTTTGTACAT GAAAAAATTT TGCTCAACAG 14109
.......... .......... .......... .......... .......... .......... 346
ATTTTTTGAC TTCTCAAAGA CCAATGCGAG GAAAGCGTTC AGAGTTATTC AGGTTGTAAA 14169
|| ||||| ||||| || | | ||| || ||||| ||| |||||||||| ||
GTTCTTTGAG TTCTCCAAAA CTGCTGCAAG AAAAGCATTC AGAGTTATTC AG........ 398
TTCTAGCAAT CCAATCTCTC TATATATCAT GTAAAATGGT GTGTTCATTG CATTTAACCA 14229
.......... .......... .......... .......... .......... .......... 398
GGCTCATTTG TTAATGCTTG GCAGGATACT CATAATGTTA GATCTGTATG TTTTCATCCT 14289
|||||| |||||||||| | |||||||| ||||||||||
.......... .......... ....GATACT CATAATGTTA GGTCTGTATG TTTTCATCCT 434
TGTGGGGATT ACCTTTTAGC AGGTACTATG ATCTTTTCAC TAAATTTAAA TTTGATTTCT 14349
|| || |||| || ||||||| ||
TGCGGTGATT ACATTTTAGC AG........ .......... .......... .......... 456
AGTTCTGCTG TGATTAACTG ATTCTTGATG TCTGATATCA GTTTGATATG CTCTGATTTT 14409
.......... .......... .......... .......... .......... .......... 456
TATGCATTAT AAGTTGTTAA CATGTTTTCA GTTGTTATCT GTAAAGTAAT TTAATCATTT 14469
.......... .......... .......... .......... .......... .......... 456
CACCAAAACA ATTTGATATT TGGGCTTAAG AATTTGGATT TCGTTCCTGG ATCAACAGTT 14529
.......... .......... .......... .......... .......... .......... 456
TCTGTCTCGT GGGCATTTGA AAAATACTGC AAGCATATCG TATGGAATTT TCTTCTTACA 14589
.......... .......... .......... .......... .......... .......... 456
TATAGTCAAA TATTAACATT CAAATATGTA TTTTTTTTAA AAAAACTCAT TTTCATATAT 14649
.......... .......... .......... .......... .......... .......... 456
TTGGAAGCAA GTGACACTGA TAAAATTATT TGCAGGGACT GATCACCCAG TTGCTCATTT 14709
||||| |||||||||| | |||||| |
.......... .......... .......... .....GGACT GATCACCCAG TAGCTCATCT 481
ATATGATATA AATACTTTTA CATGCTACTT ATCAGCAAAT GCACAGGATT CTAGTTCTCC 14769
|||||| || || ||||| | |||||| ||| ||| |||||| | ||||| | ||||| || |
CTATGATGTA AACACTTTCA CATGCTTCTT ATCCGCAAAT CCGCAGGACT CTAGTGCTGC 541
CATTAACCAG GTAGCTTTTC TCTTTCCTTC TGATTCACAA GCATTAGATT GCATTGGTTA 14829
||| ||||||
CATCAACCAG .......... .......... .......... .......... .......... 551
TATTCTCATC AAAGTTCTCC GCCAGCCATG CTTACTGATG TTGCTGCCAG GTACGCTACT 14889
|| |||| ||
.......... .......... .......... .......... .......... GTGCGCT-CT 560
CCTGTACTGG GAGCTTGTAT GTGACTGCTT CTAAAGATGG TTCTCTGCGC ATTTGGGATG 14949
| ||||||| |||| ||||| |||||||||| |||| ||||| |||||||||| || |||||||
CGGGTACTGG GAGCATGTAT GTGACTGCTT CTAAGGATGG TTCTCTGCGC ATCTGGGATG 620
GAGTATCTGC TGAATGTGTT CGACCTATTA TTGGAGCACA TGGATCTGCA GAAGCTACTA 15009
|||||||||| |||||||||| || || || | |||| ||||| |||||||| | ||||||||||
GAGTATCTGC TGAATGTGTT CGTCCCATAA TTGGGGCACA TGGATCTGTA GAAGCTACTA 680
GCGCAATTTT CACCAGAGAT G 15030
| |||| ||| ||||| ||| |
GTGCAA-TTT CACCAAAGAC G 700
********************************************************************************
EST sequence 107 -strand (File: 18965015-)
1 TGGATTTCAG TATTCAGGAT GTCAAGGGCT CATCCAAAAG CTTCCCCAAG CACGAGGTGA
61 AGCATGTCTC TGNCCATAAG AACGCTGCCC GGTGTGTGAA ATTTAGTCCT GATGGAAAGT
121 ATTTTGCANC TGGGAGTGCT GATACATCCA TTAAGTTTTT TGAGGTTGCT AAGATTAAGC
181 AGACTATGGT AGGAGACTCT AAAGATGGCC CTGCCAGGCC TGTGATACGG ACATTTTATG
241 ATCACACACA GGCCATCAAT GATCTGGATT TTCATCCTGA GAGTCCAATA CTGATATCAG
301 CTGCAAAAGA CAGTACAATA AGATTCTTTG ACTTTTCAAA AACCAATGCG AGGAAAGCGT
361 TCAGAGTTAT TCAGGATACT CATAATGTTA GATCTGTATG TTTTCATCCC TGTGGGGATT
421 TCCTTTTAGC AGGGACTGAT CACCCAGTCG CTCATTTATA TGATATAAAT ACTTTTACAT
481 GCTACTTATC AGCAAATGCA CAGGATTCTA GTTCTCCCC
Predicted gene structure (within gDNA segment 12550 to 15075):
Exon 1 12814 12823 ( 10 n); cDNA 1 10 ( 10 n); score: 1.000
Intron 1 12824 12920 ( 97 n); Pd: 0.511 (s: 0), Pa: 0.000 (s: 0.94)
Exon 2 12921 12990 ( 70 n); cDNA 11 80 ( 70 n); score: 0.943
Intron 2 12991 13196 ( 206 n); Pd: 0.964 (s: 0.94), Pa: 0.978 (s: 0.94)
Exon 3 13197 13280 ( 84 n); cDNA 81 164 ( 84 n); score: 0.964
Intron 3 13281 13380 ( 100 n); Pd: 0.000 (s: 0.96), Pa: 1.000 (s: 0.92)
Exon 4 13381 13467 ( 87 n); cDNA 165 251 ( 87 n); score: 0.931
Intron 4 13468 13886 ( 419 n); Pd: 0.992 (s: 0.94), Pa: 0.939 (s: 1.00)
Exon 5 13887 13957 ( 71 n); cDNA 252 322 ( 71 n); score: 0.972
Intron 5 13958 14109 ( 152 n); Pd: 0.973 (s: 0.96), Pa: 0.989 (s: 0.94)
Exon 6 14110 14161 ( 52 n); cDNA 323 374 ( 52 n); score: 0.942
Intron 6 14162 14253 ( 92 n); Pd: 0.890 (s: 0.94), Pa: 0.830 (s: 0.96)
Exon 7 14254 14311 ( 58 n); cDNA 375 432 ( 58 n); score: 0.966
Intron 7 14312 14684 ( 373 n); Pd: 0.979 (s: 0.96), Pa: 0.910 (s: 0.98)
Exon 8 14685 14771 ( 87 n); cDNA 433 519 ( 87 n); score: 0.977
MATCH 21326110+ 18965015- 0.957 519 1.000 C
PGS_21326110+_18965015- (12814 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14771)
Alignment (genomic DNA sequence = upper lines):
TGGATTTCAG GTAAACCCCA ACCTTGCGCC CCCGCGGTGT TGCCTAGTGG CAGTGTTTTT 12873
||||||||||
TGGATTTCAG .......... .......... .......... .......... .......... 10
TCTGGTGCTG AACATTGGTG AGGAGTGTTG ACGCCGGTGC TGTGTAGTAT GCAGGATGTC 12933
||| |||||||||
.......... .......... .......... .......... .......TAT TCAGGATGTC 23
AAGGGCTCAT CCAAGAGCTT CCCCAAGCAC GAGGCGAAGC ATGTCTCTGA CCATAAGGTG 12993
|||||||||| |||| ||||| |||||||||| |||| ||||| ||||||||| |||||||
AAGGGCTCAT CCAAAAGCTT CCCCAAGCAC GAGGTGAAGC ATGTCTCTGN CCATAAG... 80
CTTATGATTC CAATTTTCCC TTGCAAATGC ACCACTTGAA AGTTGAAACA ATTTTTGTGT 13053
.......... .......... .......... .......... .......... .......... 80
CAGACTCCTG TTTATCTGAA TATTTACTAC TGCTATTGCA CATTTTGCAC TTATCACAGT 13113
.......... .......... .......... .......... .......... .......... 80
ACCATGATTA TGTAGACAAC TTGGGATTGA CCAACAATAG ATTTTACTGA TGTTTATTGG 13173
.......... .......... .......... .......... .......... .......... 80
CTTACCATTG CATTTTTCTG TAGAACGCTG CCCGGTGTGC GAAATTTAGT CCTGATGGGA 13233
||||||| ||||||||| |||||||||| |||||||| |
.......... .......... ...AACGCTG CCCGGTGTGT GAAATTTAGT CCTGATGGAA 117
AGTATTTTGC AACTGGGAGT GCTGATACAT CCATTAAGTT TTTTGAGGTG AACTTGAAAT 13293
|||||||||| | |||||||| |||||||||| |||||||||| |||||||
AGTATTTTGC ANCTGGGAGT GCTGATACAT CCATTAAGTT TTTTGAG... .......... 164
TTGAATTGCC ACTCAGGTTG CTAGGTGGGG CTTGTGCTGT TTTCTACTTA GTTGCAACTT 13353
.......... .......... .......... .......... .......... .......... 164
GTAACTCACT ATTGCTCTGT CCTGCAGGTT GCTAAAATTA AGCAGACTAT GGTAGGGGAC 13413
||| ||||| |||| |||||||||| |||||| |||
.......... .......... .......GTT GCTAAGATTA AGCAGACTAT GGTAGGAGAC 197
TCCAAAGATG GTCCTGCCAG GCCTGTGATT CGCACATTTT ATGATCACAC ACAGGTGAGC 13473
|| ||||||| | |||||||| ||||||||| || ||||||| |||||||||| ||||
TCTAAAGATG GCCCTGCCAG GCCTGTGATA CGGACATTTT ATGATCACAC ACAG...... 251
ATGTATTGCT CATATATGAC AGTTTATTTA CTCTTCAAGG TCGTGAGACT CTTTTCAACA 13533
.......... .......... .......... .......... .......... .......... 251
CTTCCACAAG ATTGCCTCCG AGTTAGGTCT CCTGCAGTAT TTTTTTTCCT TTAATATGCG 13593
.......... .......... .......... .......... .......... .......... 251
GAGAGCTGCA TATCATTGCA TTATAGAAAG ACTGAAATAC ATGGGTAGAT CAAATCCACC 13653
.......... .......... .......... .......... .......... .......... 251
TGCCACCACA GACCACACTT ATATACACAC GCTCAACTCA CGTTTAGCAC ACTGGATGCA 13713
.......... .......... .......... .......... .......... .......... 251
CACCTAGCAG CTGCAATTTG TAGTTAGATA TTTGCTTACT GAGCTGTGTG GAGCATTGAC 13773
.......... .......... .......... .......... .......... .......... 251
ATGATATTCA ATTTTTTAAT AAACAACATT TTTTTCCATT TTCACTAGTT TCTACTTCAT 13833
.......... .......... .......... .......... .......... .......... 251
TTCCCATTGC TCAAATTTCC ACTGTGCTCG TAAACATGAT TGATTTCTTG CAGGCCATCA 13893
|||||||
.......... .......... .......... .......... .......... ...GCCATCA 258
ATGATCTGGA TTTTCATCCT GAGAGTCCAA TACTGATATC AGCTGCAAAA GACAATACAA 13953
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||||
ATGATCTGGA TTTTCATCCT GAGAGTCCAA TACTGATATC AGCTGCAAAA GACAGTACAA 318
TAAAGTATGC TTATCCTTGA TGTCTACACT CCGTGCTGTT AAATTGTCTA TTTGAAGTGC 14013
|||
TAAG...... .......... .......... .......... .......... .......... 322
TCATACTAGG ATTAAGCATG ATTTTTTAGG AATTTTTTGC GGTATTAATT GCTATCTGTG 14073
.......... .......... .......... .......... .......... .......... 322
TTATTGTTTT GTACATGAAA AAATTTTGCT CAACAGATTT TTTGACTTCT CAAAGACCAA 14133
||| |||||||| | |||| |||||
.......... .......... .......... ......ATTC TTTGACTTTT CAAAAACCAA 346
TGCGAGGAAA GCGTTCAGAG TTATTCAGGT TGTAAATTCT AGCAATCCAA TCTCTCTATA 14193
|||||||||| |||||||||| ||||||||
TGCGAGGAAA GCGTTCAGAG TTATTCAG.. .......... .......... .......... 374
TATCATGTAA AATGGTGTGT TCATTGCATT TAACCAGGCT CATTTGTTAA TGCTTGGCAG 14253
.......... .......... .......... .......... .......... .......... 374
GATACTCATA ATGTTAGATC TGTATGTTTT CATCCTTGTG GGGATTACCT TTTAGCAGGT 14313
|||||||||| |||||||||| |||||||||| ||||| |||| |||||| ||| ||||||||
GATACTCATA ATGTTAGATC TGTATGTTTT CATCCCTGTG GGGATTTCCT TTTAGCAG.. 432
ACTATGATCT TTTCACTAAA TTTAAATTTG ATTTCTAGTT CTGCTGTGAT TAACTGATTC 14373
.......... .......... .......... .......... .......... .......... 432
TTGATGTCTG ATATCAGTTT GATATGCTCT GATTTTTATG CATTATAAGT TGTTAACATG 14433
.......... .......... .......... .......... .......... .......... 432
TTTTCAGTTG TTATCTGTAA AGTAATTTAA TCATTTCACC AAAACAATTT GATATTTGGG 14493
.......... .......... .......... .......... .......... .......... 432
CTTAAGAATT TGGATTTCGT TCCTGGATCA ACAGTTTCTG TCTCGTGGGC ATTTGAAAAA 14553
.......... .......... .......... .......... .......... .......... 432
TACTGCAAGC ATATCGTATG GAATTTTCTT CTTACATATA GTCAAATATT AACATTCAAA 14613
.......... .......... .......... .......... .......... .......... 432
TATGTATTTT TTTTAAAAAA ACTCATTTTC ATATATTTGG AAGCAAGTGA CACTGATAAA 14673
.......... .......... .......... .......... .......... .......... 432
ATTATTTGCA GGGACTGATC ACCCAGTTGC TCATTTATAT GATATAAATA CTTTTACATG 14733
||||||||| ||||||| || |||||||||| |||||||||| ||||||||||
.......... .GGACTGATC ACCCAGTCGC TCATTTATAT GATATAAATA CTTTTACATG 481
CTACTTATCA GCAAATGCAC AGGATTCTAG TTCTCCCA 14771
|||||||||| |||||||||| |||||||||| |||||||
CTACTTATCA GCAAATGCAC AGGATTCTAG TTCTCCCC 519
********************************************************************************
EST sequence 76 +strand (File: 21278903+)
1 CGGCACGAGG CCCACGGGAG GACGGAGGGG AGGGCCGAGA TGGACGCGGC GGTGCAGGAG
61 GCCAAGCTGC TGCGGCAGGT GAACGCCCTC ATCGTGGCGC ACCTCCGCGA CCAGAACCTC
121 ACGCAGGCCG CCGTCGCCGT CGCCGCCGCC ACCATGACCC CCAAGGCCGA CGCCTCCCTC
181 CCCAACCACC TCCTCCGACT CGTCGCCAAG GGCCTCGCGG TTGAGCGGGA GGAGGCGGCC
241 AGGGGAGGCG GAGCTCCCCC CGCGTTTGAC
Predicted gene structure (within gDNA segment 11937 to 13287):
Exon 1 12473 12640 ( 168 n); cDNA 49 210 ( 162 n); score: 0.851
MATCH 21326110+ 21278903+ 0.851 168 0.622 C
PGS_21326110+_21278903+ (12473 12640)
Alignment (genomic DNA sequence = upper lines):
GCGGTGCAGG AGGCGAAGCT GCTGCGGCAG GTGAACGCGC TCATCGTGGC GCACCTCCGT 12532
|||||||||| |||| ||||| |||||||||| |||||||| | |||||||||| |||||||||
GCGGTGCAGG AGGCCAAGCT GCTGCGGCAG GTGAACGCCC TCATCGTGGC GCACCTCCGC 108
AGCCAGAACC TCGGGCAGGC CGCAGCCGCC GTCGCCGCCG CCACCATGAC CCCCATCTCC 12592
|||||||| || |||||| ||| | |||| |||||||||| |||||||||| ||||| ||
GACCAGAACC TCACGCAGGC CGCCGTCGCC GTCGCCGCCG CCACCATGAC CCCCAAGGCC 168
GCCGCCGAAT CCGTCCCCGC AAATCAACTC CTACGTCTCG TGGCCAAG 12640
| |||| | || | ||| | || || ||| || || |||| | ||||||
GACGCC---T CCCT-CCC-C -AACCACCTC CTCCGACTCG TCGCCAAG 210
********************************************************************************
EST sequence 16 +strand (File: 25415362+)
1 GCAGGAGGCG AAGCTGCTGC GGCAGGTGAA CGCCCTCATC GTGGCGCACC TCCGCGACCA
61 GAACCTCACG CAGGCCGCCA CCGCCGTCGC CGCCGCCACC ATGACCCCCA AGGCCGACGC
121 CTCCGCCCCC AACCACCTCC TCCGCCTCCG TCGCCAAGGG
Predicted gene structure (within gDNA segment 12178 to 13142):
Exon 1 12478 12586 ( 109 n); cDNA 1 109 ( 109 n); score: 0.927
MATCH 21326110+ 25415362+ 0.927 109 0.681 C
PGS_21326110+_25415362+ (12478 12586)
Alignment (genomic DNA sequence = upper lines):
GCAGGAGGCG AAGCTGCTGC GGCAGGTGAA CGCGCTCATC GTGGCGCACC TCCGTAGCCA 12537
|||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||| |||
GCAGGAGGCG AAGCTGCTGC GGCAGGTGAA CGCCCTCATC GTGGCGCACC TCCGCGACCA 60
GAACCTCGGG CAGGCCGCAG CCGCCGTCGC CGCCGCCACC ATGACCCCC 12586
||||||| | |||||||| |||||||||| |||||||||| |||||||||
GAACCTCACG CAGGCCGCCA CCGCCGTCGC CGCCGCCACC ATGACCCCC 109
********************************************************************************
EST sequence 69 +strand (File: 13120649+)
1 TGGAAGTGGG GACACATCCA TTAAGTTCTT TGAGGTATCA AAAATTAAGC AGACGATGTT
61 AGGAGACTCC AAAGAAGGCC CTGGCCGACC TGTGGTCCGT ACATTTTATG ACCATGTGCA
121 GCCCATCAAT GATCTGGATT TCCATCCTAT TAGCCCAATA CTGATATCTG CAGCAAAAGA
181 TAATACGATA AAGTTCTTTG AGTTCTCCAA AACTGCTGCA AGAAAAGCAT TCAGAGTTAT
241 TCAGGATACT CATAACGTTA GGTCTGTATG TTTTCATCCT TGCGGCGATT ACATTATAGC
301 AGGGACTGAT CACCCAGTAG CTCATCTCTA TGATGTAAAC ACTTTCACAT GCTTCTTATC
361 CGCAAATCCG CAGGACTCTA GTGCTGCCAT CAACCATGTG CGCTACTCGG GTACTGGGAG
421 CATGTATGTG ACTGCTTCTA AGGATGGTTC TCTGCGCATC TGAGATGGAG TATCTGCTGA
481 ATGTGTGCGT CCCATAATTG GGGCACATGG ATCTGTAGAA GCTACTAGTG CAATTTTCAC
541 CA
Predicted gene structure (within gDNA segment 12895 to 15329):
Exon 1 13247 13280 ( 34 n); cDNA 1 34 ( 34 n); score: 0.853
Intron 1 13281 13380 ( 100 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0.82)
Exon 2 13381 13467 ( 87 n); cDNA 35 121 ( 87 n); score: 0.782
Intron 2 13468 13886 ( 419 n); Pd: 0.992 (s: 0.74), Pa: 0.939 (s: 0.86)
Exon 3 13887 13957 ( 71 n); cDNA 122 192 ( 71 n); score: 0.859
Intron 3 13958 14109 ( 152 n); Pd: 0.973 (s: 0.84), Pa: 0.989 (s: 0.78)
Exon 4 14110 14161 ( 52 n); cDNA 193 244 ( 52 n); score: 0.788
Intron 4 14162 14253 ( 92 n); Pd: 0.890 (s: 0.80), Pa: 0.830 (s: 0.90)
Exon 5 14254 14311 ( 58 n); cDNA 245 302 ( 58 n); score: 0.897
Intron 5 14312 14684 ( 373 n); Pd: 0.979 (s: 0.88), Pa: 0.910 (s: 0.88)
Exon 6 14685 14779 ( 95 n); cDNA 303 397 ( 95 n); score: 0.842
Intron 6 14780 14879 ( 100 n); Pd: 0.995 (s: 0.82), Pa: 0.000 (s: 0.90)
Exon 7 14880 15024 ( 145 n); cDNA 398 542 ( 145 n); score: 0.903
MATCH 21326110+ 13120649+ 0.852 542 1.000 C
PGS_21326110+_13120649+ (13247 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15024)
Alignment (genomic DNA sequence = upper lines):
TGGGAGTGCT GATACATCCA TTAAGTTTTT TGAGGTGAAC TTGAAATTTG AATTGCCACT 13306
||| |||| || ||||||| ||||||| || ||||
TGGAAGTGGG GACACATCCA TTAAGTTCTT TGAG...... .......... .......... 34
CAGGTTGCTA GGTGGGGCTT GTGCTGTTTT CTACTTAGTT GCAACTTGTA ACTCACTATT 13366
.......... .......... .......... .......... .......... .......... 34
GCTCTGTCCT GCAGGTTGCT AAAATTAAGC AGACTATGGT AGGGGACTCC AAAGATGGTC 13426
|| | |||||||||| |||| ||| | ||| |||||| ||||| || |
.......... ....GTATCA AAAATTAAGC AGACGATGTT AGGAGACTCC AAAGAAGGCC 80
CTGCCAGGCC TGTGATTCGC ACATTTTATG ATCACACACA GGTGAGCATG TATTGCTCAT 13486
||| | | || |||| | || |||||||||| | || || |
CTGGCCGACC TGTGGTCCGT ACATTTTATG ACCATGTGCA G......... .......... 121
ATATGACAGT TTATTTACTC TTCAAGGTCG TGAGACTCTT TTCAACACTT CCACAAGATT 13546
.......... .......... .......... .......... .......... .......... 121
GCCTCCGAGT TAGGTCTCCT GCAGTATTTT TTTTCCTTTA ATATGCGGAG AGCTGCATAT 13606
.......... .......... .......... .......... .......... .......... 121
CATTGCATTA TAGAAAGACT GAAATACATG GGTAGATCAA ATCCACCTGC CACCACAGAC 13666
.......... .......... .......... .......... .......... .......... 121
CACACTTATA TACACACGCT CAACTCACGT TTAGCACACT GGATGCACAC CTAGCAGCTG 13726
.......... .......... .......... .......... .......... .......... 121
CAATTTGTAG TTAGATATTT GCTTACTGAG CTGTGTGGAG CATTGACATG ATATTCAATT 13786
.......... .......... .......... .......... .......... .......... 121
TTTTAATAAA CAACATTTTT TTCCATTTTC ACTAGTTTCT ACTTCATTTC CCATTGCTCA 13846
.......... .......... .......... .......... .......... .......... 121
AATTTCCACT GTGCTCGTAA ACATGATTGA TTTCTTGCAG GCCATCAATG ATCTGGATTT 13906
||||||||| ||||||||||
.......... .......... .......... .......... CCCATCAATG ATCTGGATTT 141
TCATCCTGAG AGTCCAATAC TGATATCAGC TGCAAAAGAC AATACAATAA AGTATGCTTA 13966
|||||| || ||||||| ||||||| || |||||||| ||||| |||| |
CCATCCTATT AGCCCAATAC TGATATCTGC AGCAAAAGAT AATACGATAA A......... 192
TCCTTGATGT CTACACTCCG TGCTGTTAAA TTGTCTATTT GAAGTGCTCA TACTAGGATT 14026
.......... .......... .......... .......... .......... .......... 192
AAGCATGATT TTTTAGGAAT TTTTTGCGGT ATTAATTGCT ATCTGTGTTA TTGTTTTGTA 14086
.......... .......... .......... .......... .......... .......... 192
CATGAAAAAA TTTTGCTCAA CAGATTTTTT GACTTCTCAA AGACCAATGC GAGGAAAGCG 14146
|| ||| || ||||| | | || ||| || |||||
.......... .......... ...GTTCTTT GAGTTCTCCA AAACTGCTGC AAGAAAAGCA 229
TTCAGAGTTA TTCAGGTTGT AAATTCTAGC AATCCAATCT CTCTATATAT CATGTAAAAT 14206
|||||||||| |||||
TTCAGAGTTA TTCAG..... .......... .......... .......... .......... 244
GGTGTGTTCA TTGCATTTAA CCAGGCTCAT TTGTTAATGC TTGGCAGGAT ACTCATAATG 14266
||| |||||||| |
.......... .......... .......... .......... .......GAT ACTCATAACG 257
TTAGATCTGT ATGTTTTCAT CCTTGTGGGG ATTACCTTTT AGCAGGTACT ATGATCTTTT 14326
|||| ||||| |||||||||| ||||| || | ||||| || | |||||
TTAGGTCTGT ATGTTTTCAT CCTTGCGGCG ATTACATTAT AGCAG..... .......... 302
CACTAAATTT AAATTTGATT TCTAGTTCTG CTGTGATTAA CTGATTCTTG ATGTCTGATA 14386
.......... .......... .......... .......... .......... .......... 302
TCAGTTTGAT ATGCTCTGAT TTTTATGCAT TATAAGTTGT TAACATGTTT TCAGTTGTTA 14446
.......... .......... .......... .......... .......... .......... 302
TCTGTAAAGT AATTTAATCA TTTCACCAAA ACAATTTGAT ATTTGGGCTT AAGAATTTGG 14506
.......... .......... .......... .......... .......... .......... 302
ATTTCGTTCC TGGATCAACA GTTTCTGTCT CGTGGGCATT TGAAAAATAC TGCAAGCATA 14566
.......... .......... .......... .......... .......... .......... 302
TCGTATGGAA TTTTCTTCTT ACATATAGTC AAATATTAAC ATTCAAATAT GTATTTTTTT 14626
.......... .......... .......... .......... .......... .......... 302
TAAAAAAACT CATTTTCATA TATTTGGAAG CAAGTGACAC TGATAAAATT ATTTGCAGGG 14686
||
.......... .......... .......... .......... .......... ........GG 304
ACTGATCACC CAGTTGCTCA TTTATATGAT ATAAATACTT TTACATGCTA CTTATCAGCA 14746
|||||||||| |||| ||||| | | |||||| |||| |||| | ||||||| |||||| |||
ACTGATCACC CAGTAGCTCA TCTCTATGAT GTAAACACTT TCACATGCTT CTTATCCGCA 364
AATGCACAGG ATTCTAGTTC TCCCATTAAC CAGGTAGCTT TTCTCTTTCC TTCTGATTCA 14806
||| | |||| | |||||| | | |||| ||| ||
AATCCGCAGG ACTCTAGTGC TGCCATCAAC CAT....... .......... .......... 397
CAAGCATTAG ATTGCATTGG TTATATTCTC ATCAAAGTTC TCCGCCAGCC ATGCTTACTG 14866
.......... .......... .......... .......... .......... .......... 397
ATGTTGCTGC CAGGTACGCT ACTCCTGTAC TGGGAGCTTG TATGTGACTG CTTCTAAAGA 14926
|| |||| |||| |||| ||||||| || |||||||||| ||||||| ||
.......... ...GTGCGCT ACTCGGGTAC TGGGAGCATG TATGTGACTG CTTCTAAGGA 444
TGGTTCTCTG CGCATTTGGG ATGGAGTATC TGCTGAATGT GTTCGACCTA TTATTGGAGC 14986
|||||||||| ||||| || | |||||||||| |||||||||| || || || | | ||||| ||
TGGTTCTCTG CGCATCTGAG ATGGAGTATC TGCTGAATGT GTGCGTCCCA TAATTGGGGC 504
ACATGGATCT GCAGAAGCTA CTAGCGCAAT TTTCACCA 15024
|||||||||| | |||||||| |||| ||||| ||||||||
ACATGGATCT GTAGAAGCTA CTAGTGCAAT TTTCACCA 542
********************************************************************************
EST sequence 79 +strand (File: 24301133+)
1 CGGCACGAGG GAGAGAACTA GTCTCGAGTT TTCCAAAACT GCTGCAAGAA AAGCATTCAG
61 AGTTATTCAG GATACTCATA ATGTTAGGTC TGTATGTTTT CATCCTTGCG GTGATTACAT
121 TTTAGCAGGG ACTGATCACC CAGTAGCTCA TCTCTATGAT GTAAACACTT TCACATGCTT
181 CTTATCCGCA AATCCGCAGG ACTCTAGTGC TGCCATCAAC CAGGTGCGCT ACTCGGGTAC
241 TGGGAGCATG TATGTGACTG CTTCTAAGGA TGGTTCTCTG CGCATCTGGG ATGGAGTATC
301 TGCTGAATGT GTTCGTCCCA TAATTGGGGC ACATGGATCT GTAGAAGCTA CTAGTGCAAT
361 TTTCACCAAA GACGAGAGGT ACATCCTATC CAGTGGGAAG GATTCGTGTA TAAAGTTATG
421 GGAAGTTGGC ACCGGAAGAC TTGTGAAGCA ATATCCAGGT GTTGTTAATA CACAATTCCG
481 GTGTCAGGCT GTCTTCAACG AAACCGAGGA GTTTGTACTA TCAACCGACG AGCAAAACAA
541 CGAGGTTGTC GTCT
Predicted gene structure (within gDNA segment 13572 to 16290):
Exon 1 14110 14161 ( 52 n); cDNA 20 70 ( 51 n); score: 0.731
Intron 1 14162 14253 ( 92 n); Pd: 0.890 (s: 0.74), Pa: 0.830 (s: 0.92)
Exon 2 14254 14311 ( 58 n); cDNA 71 128 ( 58 n); score: 0.931
Intron 2 14312 14684 ( 373 n); Pd: 0.979 (s: 0.92), Pa: 0.910 (s: 0.88)
Exon 3 14685 14779 ( 95 n); cDNA 129 223 ( 95 n); score: 0.853
Intron 3 14780 14879 ( 100 n); Pd: 0.995 (s: 0.84), Pa: 0.000 (s: 0.90)
Exon 4 14880 15034 ( 155 n); cDNA 224 378 ( 155 n); score: 0.910
Intron 4 15035 15519 ( 485 n); Pd: 0.794 (s: 0.92), Pa: 0.933 (s: 0.84)
Exon 5 15520 15628 ( 109 n); cDNA 379 487 ( 109 n); score: 0.807
Intron 5 15629 15846 ( 218 n); Pd: 1.000 (s: 0.78), Pa: 0.995 (s: 0.82)
Exon 6 15847 15903 ( 57 n); cDNA 488 544 ( 57 n); score: 0.825
Intron 6 15904 15975 ( 72 n); Pd: 0.991 (s: 0.80), Pa: 0.993 (s: 0)
Exon 7 15976 15985 ( 10 n); cDNA 545 554 ( 10 n); score: 1.000
MATCH 21326110+ 24301133+ 0.854 536 0.968 C
PGS_21326110+_24301133+ (14110 14161,14254 14311,14685 14779,14880 15034,15520 15628,15847 15903,15976 15985)
Alignment (genomic DNA sequence = upper lines):
ATTTTTTGAC TTCTCAAAGA CCAATGCGAG GAAAGCGTTC AGAGTTATTC AGGTTGTAAA 14169
| | | || || || || | | ||| || ||||| ||| |||||||||| ||
A-GTCTCGAG TTTTCCAAAA CTGCTGCAAG AAAAGCATTC AGAGTTATTC AG........ 70
TTCTAGCAAT CCAATCTCTC TATATATCAT GTAAAATGGT GTGTTCATTG CATTTAACCA 14229
.......... .......... .......... .......... .......... .......... 70
GGCTCATTTG TTAATGCTTG GCAGGATACT CATAATGTTA GATCTGTATG TTTTCATCCT 14289
|||||| |||||||||| | |||||||| ||||||||||
.......... .......... ....GATACT CATAATGTTA GGTCTGTATG TTTTCATCCT 106
TGTGGGGATT ACCTTTTAGC AGGTACTATG ATCTTTTCAC TAAATTTAAA TTTGATTTCT 14349
|| || |||| || ||||||| ||
TGCGGTGATT ACATTTTAGC AG........ .......... .......... .......... 128
AGTTCTGCTG TGATTAACTG ATTCTTGATG TCTGATATCA GTTTGATATG CTCTGATTTT 14409
.......... .......... .......... .......... .......... .......... 128
TATGCATTAT AAGTTGTTAA CATGTTTTCA GTTGTTATCT GTAAAGTAAT TTAATCATTT 14469
.......... .......... .......... .......... .......... .......... 128
CACCAAAACA ATTTGATATT TGGGCTTAAG AATTTGGATT TCGTTCCTGG ATCAACAGTT 14529
.......... .......... .......... .......... .......... .......... 128
TCTGTCTCGT GGGCATTTGA AAAATACTGC AAGCATATCG TATGGAATTT TCTTCTTACA 14589
.......... .......... .......... .......... .......... .......... 128
TATAGTCAAA TATTAACATT CAAATATGTA TTTTTTTTAA AAAAACTCAT TTTCATATAT 14649
.......... .......... .......... .......... .......... .......... 128
TTGGAAGCAA GTGACACTGA TAAAATTATT TGCAGGGACT GATCACCCAG TTGCTCATTT 14709
||||| |||||||||| | |||||| |
.......... .......... .......... .....GGACT GATCACCCAG TAGCTCATCT 153
ATATGATATA AATACTTTTA CATGCTACTT ATCAGCAAAT GCACAGGATT CTAGTTCTCC 14769
|||||| || || ||||| | |||||| ||| ||| |||||| | ||||| | ||||| || |
CTATGATGTA AACACTTTCA CATGCTTCTT ATCCGCAAAT CCGCAGGACT CTAGTGCTGC 213
CATTAACCAG GTAGCTTTTC TCTTTCCTTC TGATTCACAA GCATTAGATT GCATTGGTTA 14829
||| ||||||
CATCAACCAG .......... .......... .......... .......... .......... 223
TATTCTCATC AAAGTTCTCC GCCAGCCATG CTTACTGATG TTGCTGCCAG GTACGCTACT 14889
|| |||||||
.......... .......... .......... .......... .......... GTGCGCTACT 233
CCTGTACTGG GAGCTTGTAT GTGACTGCTT CTAAAGATGG TTCTCTGCGC ATTTGGGATG 14949
| ||||||| |||| ||||| |||||||||| |||| ||||| |||||||||| || |||||||
CGGGTACTGG GAGCATGTAT GTGACTGCTT CTAAGGATGG TTCTCTGCGC ATCTGGGATG 293
GAGTATCTGC TGAATGTGTT CGACCTATTA TTGGAGCACA TGGATCTGCA GAAGCTACTA 15009
|||||||||| |||||||||| || || || | |||| ||||| |||||||| | ||||||||||
GAGTATCTGC TGAATGTGTT CGTCCCATAA TTGGGGCACA TGGATCTGTA GAAGCTACTA 353
GCGCAATTTT CACCAGAGAT GAGAGGTAAG CGAGCTACCA GCATGTCTAA GGTGCTCTTC 15069
| |||||||| ||||| ||| |||||
GTGCAATTTT CACCAAAGAC GAGAG..... .......... .......... .......... 378
CCTCAAGATA AAATCCAGTC ATTGTTTGGT TTGAAGAACA GAGAGAAAGG CATATGCTGT 15129
.......... .......... .......... .......... .......... .......... 378
ATGATTCAAG ACAGTAACTA CTTCAAACCC TGTTTGGAAT GTGGGAATCT TGTAGTGATT 15189
.......... .......... .......... .......... .......... .......... 378
CTGAATGATT TATAACATGT CCTGGATAAT TTCCTGTGTT TCAGACGTGT CGTAACTTTA 15249
.......... .......... .......... .......... .......... .......... 378
TAACACGAAT AACTCTTTCT CCTTTACCCT ACTATTTCAC CACTAAACAA CTAACTTGCC 15309
.......... .......... .......... .......... .......... .......... 378
TATAAACACT TTTTAGACTT CTTCTGAAAG GCCTAGTGTT TATGTGGTTA TATGCAGCGT 15369
.......... .......... .......... .......... .......... .......... 378
GAATGCACTT GCATATAAGA TTGATCTAAA AAATTGATGT AGTGAACTTT GACTACCCGA 15429
.......... .......... .......... .......... .......... .......... 378
AGTATATGCT TAGATAGTTC ATGGATTTCT TTCATAAAAC TGCACACTGT ATTCTGGTTA 15489
.......... .......... .......... .......... .......... .......... 378
TCTGTTATGA AGTTTACTAC GTTCTTTCAG GTATGTCCTA TCTTGTGGGA AAGATTCTTG 15549
||| ||||| || |||||| | ||||| ||
.......... .......... .......... GTACATCCTA TCCAGTGGGA AGGATTCGTG 408
TGTCAAGTTA TGGGAAGTTG GCACTGGACG ACTTGTGAAG CAATATGCAG GAGCCATTCG 15609
| | |||||| |||||||||| |||| ||| | |||||||||| |||||| ||| | | ||
TATAAAGTTA TGGGAAGTTG GCACCGGAAG ACTTGTGAAG CAATATCCAG GTGTTGTTAA 468
CAGACAATTT CGTTGTCAGG TTAGTTTCTC TGTGTTTCTA TAAGATTATT ATTTTTTCCT 15669
| |||||| || ||||||
TACACAATTC CGGTGTCAG. .......... .......... .......... .......... 487
GATTTAAATT TACTCGTGTG CCATATATAT TATTTTTACC CAAAATTTTA GGAAACAAAA 15729
.......... .......... .......... .......... .......... .......... 487
TATTGCAATT CTTTAATTTG AAAATAGGCT GGTTTGAGCT TGCAGCTTAG GATAACAACA 15789
.......... .......... .......... .......... .......... .......... 487
TACCTAACCT TGCTATGATA GACAATAAAT ATGATAATAA CTGTTCTTAC TATCCAGGCT 15849
|||
.......... .......... .......... .......... .......... .......GCT 490
GTCTTCAATG AAACCGAAGA ATTTGTTCTA TCAGTTGATG AACAAAACAA TGAGGTAAAT 15909
|||||||| | ||||||| || ||||| ||| ||| || | | |||||||| |||
GTCTTCAACG AAACCGAGGA GTTTGTACTA TCAACCGACG AGCAAAACAA CGAG...... 544
TCCAAATTGA GAACAGTATA TATATTTGTA TTTCAGCAAG CTTAACTATG ATACGTCACT 15969
.......... .......... .......... .......... .......... .......... 544
CTTCAGGTTG TCGTCT 15985
|||| ||||||
......GTTG TCGTCT 554
********************************************************************************
EST sequence 58 +strand (File: 14571087+)
1 GCATGGGAGA ATATTCAAAA AGCAAAAGCT GAGGCAGCAA TTCAGAAGTT AGTGGTATGT
61 TCTTTGCTCT AATTCGAACT ATATTGCACT ATTTTTAACT GAATTGATGC TAGGATTGTT
121 TGCAGGACAT TTTGTTTATA TCTAATGCAT CTAGTTGATC CTGAATTGTA CCCACACTTC
181 TATGATATCA GATTAAGCTC GAGAAGAAAA GATCATCTTC CCTGGATAAG ATTTTGAACA
241 CCCTCAAGTC TGCTCAAAGA AAAGCCCAGG TGATGCGTGA GCGTGAGCGT GATGCAGTAA
301 CAGCAAACCA AGATGGAAAA GGCTCTAGGA AGGCAAAAAA GAGAGTGCAG CTTAGCAAGA
361 ATGGTCAAAT CAGTTCACTG AGTGGCTGCT TCACTTGCCA TGCTTTCTGA TACATGTAAT
421 TCCAAAATTG AGTAAGTTGC CATCAGACTG TTAGGGCCTG TTTAGTTCGC ACCCTGAAAA
481 GTTTTTTTTT TGGGGGGGTA CTGTAGCACA TGTGTAACTA TATTAATTAG TGTCTAATCA
541 TGGACCAACT AGACTCAAAA GGTTTGTCTC GCAAAATACA TGTAAACTGT GCAATTGGTT
601 ATTTTTTTAT CTATATTTAA TGCTC
Predicted gene structure (within gDNA segment 13726 to 17349):
Exon 1 14844 14868 ( 25 n); cDNA 387 411 ( 25 n); score: 0.760
Intron 1 14869 15233 ( 365 n); Pd: 0.000 (s: 0), Pa: 0.765 (s: 0)
Exon 2 15234 15240 ( 7 n); cDNA 412 418 ( 7 n); score: 0.714
Intron 2 15241 15907 ( 667 n); Pd: 0.243 (s: 0), Pa: 0.000 (s: 0)
Exon 3 15908 15924 ( 17 n); cDNA 419 435 ( 17 n); score: 0.765
Intron 3 15925 15975 ( 51 n); Pd: 0.022 (s: 0), Pa: 0.993 (s: 0)
Exon 4 15976 15981 ( 6 n); cDNA 436 441 ( 6 n); score: 0.833
Intron 4 15982 16320 ( 339 n); Pd: 0.000 (s: 0), Pa: 0.818 (s: 0)
Exon 5 16321 16334 ( 14 n); cDNA 442 454 ( 13 n); score: 0.571
Intron 5 16335 16505 ( 171 n); Pd: 0.000 (s: 0), Pa: 0.758 (s: 0)
Exon 6 16506 16536 ( 31 n); cDNA 455 486 ( 32 n); score: 0.710
Intron 6 16537 16896 ( 360 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.62)
Exon 7 16897 17040 ( 144 n); cDNA 487 625 ( 139 n); score: 0.736
MATCH 21326110+ 14571087+ 0.736 244 0.390 C
PGS_21326110+_14571087+ (14844 14868,15234 15240,15908 15924,15976 15981,16321 16334,16506 16536,16897 17040)
Alignment (genomic DNA sequence = upper lines):
TTCTCCGCCA GCCATGCTTA CTGATGTTGC TGCCAGGTAC GCTACTCCTG TACTGGGAGC 14903
| || | | ||||||||| |||||
TGCTTCACTT GCCATGCTTT CTGAT..... .......... .......... .......... 411
TTGTATGTGA CTGCTTCTAA AGATGGTTCT CTGCGCATTT GGGATGGAGT ATCTGCTGAA 14963
.......... .......... .......... .......... .......... .......... 411
TGTGTTCGAC CTATTATTGG AGCACATGGA TCTGCAGAAG CTACTAGCGC AATTTTCACC 15023
.......... .......... .......... .......... .......... .......... 411
AGAGATGAGA GGTAAGCGAG CTACCAGCAT GTCTAAGGTG CTCTTCCCTC AAGATAAAAT 15083
.......... .......... .......... .......... .......... .......... 411
CCAGTCATTG TTTGGTTTGA AGAACAGAGA GAAAGGCATA TGCTGTATGA TTCAAGACAG 15143
.......... .......... .......... .......... .......... .......... 411
TAACTACTTC AAACCCTGTT TGGAATGTGG GAATCTTGTA GTGATTCTGA ATGATTTATA 15203
.......... .......... .......... .......... .......... .......... 411
ACATGTCCTG GATAATTTCC TGTGTTTCAG ACGTGTCGTA ACTTTATAAC ACGAATAACT 15263
|| |||
.......... .......... .......... ACATGTA... .......... .......... 418
CTTTCTCCTT TACCCTACTA TTTCACCACT AAACAACTAA CTTGCCTATA AACACTTTTT 15323
.......... .......... .......... .......... .......... .......... 418
AGACTTCTTC TGAAAGGCCT AGTGTTTATG TGGTTATATG CAGCGTGAAT GCACTTGCAT 15383
.......... .......... .......... .......... .......... .......... 418
ATAAGATTGA TCTAAAAAAT TGATGTAGTG AACTTTGACT ACCCGAAGTA TATGCTTAGA 15443
.......... .......... .......... .......... .......... .......... 418
TAGTTCATGG ATTTCTTTCA TAAAACTGCA CACTGTATTC TGGTTATCTG TTATGAAGTT 15503
.......... .......... .......... .......... .......... .......... 418
TACTACGTTC TTTCAGGTAT GTCCTATCTT GTGGGAAAGA TTCTTGTGTC AAGTTATGGG 15563
.......... .......... .......... .......... .......... .......... 418
AAGTTGGCAC TGGACGACTT GTGAAGCAAT ATGCAGGAGC CATTCGCAGA CAATTTCGTT 15623
.......... .......... .......... .......... .......... .......... 418
GTCAGGTTAG TTTCTCTGTG TTTCTATAAG ATTATTATTT TTTCCTGATT TAAATTTACT 15683
.......... .......... .......... .......... .......... .......... 418
CGTGTGCCAT ATATATTATT TTTACCCAAA ATTTTAGGAA ACAAAATATT GCAATTCTTT 15743
.......... .......... .......... .......... .......... .......... 418
AATTTGAAAA TAGGCTGGTT TGAGCTTGCA GCTTAGGATA ACAACATACC TAACCTTGCT 15803
.......... .......... .......... .......... .......... .......... 418
ATGATAGACA ATAAATATGA TAATAACTGT TCTTACTATC CAGGCTGTCT TCAATGAAAC 15863
.......... .......... .......... .......... .......... .......... 418
CGAAGAATTT GTTCTATCAG TTGATGAACA AAACAATGAG GTAAATTCC- AAATTGAGAA 15922
||||| |||||||| |
.......... .......... .......... .......... ....ATTCCA AAATTGAGTA 434
CAGTATATAT ATTTGTATTT CAGCAAGCTT AACTATGATA CGTCACTCTT CAGGTTGTCG 15982
| |||| |
-A........ .......... .......... .......... .......... ...GTTGCC. 441
TCTGGGATGC ACTTACTGCA GAAAAGGTTG CAAGATTGCC CTCTGGCAGC ACTGGTGCTC 16042
.......... .......... .......... .......... .......... .......... 441
CCAGATGGCT CGACCACTCC CCAGTTGAAC CAGTTTTTGT TATTTGTGGA AATGATAGAT 16102
.......... .......... .......... .......... .......... .......... 441
CGATCAGATT CTGGAAACAA ACCGTATAGC TTGTAGATTC AACCATTCAA ATCAAAAGTA 16162
.......... .......... .......... .......... .......... .......... 441
TGCTTTCAGT ATTACGTTTC AGGAGGAATG TGCTCATGTA ACTTTAGTTG TATATGGGAG 16222
.......... .......... .......... .......... .......... .......... 441
AAATTTGCAT AAGCATTTTT TTTATTGGAA ACTGCATAAG CAATTGATTG ATCTAATAGC 16282
.......... .......... .......... .......... .......... .......... 441
AAACCCCAAT GATATGTTTT TTTTTTGGCT CTGCATAGCT GATGACAGTT GTATGAACCC 16342
| | ||| |||
.......... .......... .......... ........AT CA-GACTGTT AG........ 454
TTGACCTGAT TCTTATTGGT CAGGCCCTTT TCGATGATTT GCTATTTTAT CCCAATTGTG 16402
.......... .......... .......... .......... .......... .......... 454
GATTGCGGAA TATATTTCTT CTTCGAATGT AATGATGGTC TCGCCCTACC ACATGTGTGA 16462
.......... .......... .......... .......... .......... .......... 454
TAGCCTATAA AAGTTCTACA ACACATTATT GCATTTCACT TAGGGCATGT TTAGATTG-A 16521
||| ||| |||| | | |
.......... .......... .......... .......... ...GGCCTGT TTAGTTCGCA 471
AGATGAAAAT TTTTTAGGTC ACATCGGATA TGTCGGAAGG ATGTCGGGAG GGGTTTTTAA 16581
|||||| |||||
CCCTGAAAAG TTTTT..... .......... .......... .......... .......... 486
AAACTAATAA AAAAAACAAA TTACATAACT CGTCAGGAAA CTGCAAGACG AATCTATTAA 16641
.......... .......... .......... .......... .......... .......... 486
GTATAATTAA TCTATTATTA GCACATGTGG GTTACTGTAG CACTTAAGGC TAATCATGGA 16701
.......... .......... .......... .......... .......... .......... 486
CTAACTAGGC TTAAAAAATT CATCTCGCGA TTTTCAACCA AACTGTGTAA TTATTTTTTA 16761
.......... .......... .......... .......... .......... .......... 486
TCTACATTTA ATGTTTTATG TATGTGTCTA AAGATTCAAT GTGATGGATG AAAATTTTTT 16821
.......... .......... .......... .......... .......... .......... 486
AGGTGGGAAC TAAACAGGGC CTTATATTTT TTAAAAAAGA TGTGCAAGTG TCAGGCCTTG 16881
.......... .......... .......... .......... .......... .......... 486
TTTAGTTTCG AAAACTTTTT GGTTTTTGAG ACTGTAGCAC TTTCGTTTTT ATTTGACAAA 16941
||||| || | |||||||||| | || | || | ||
.......... .....TTTTT GG--GGGGGT ACTGTAGCAC ATGTGTAACT ATAT--TAAT 527
TATTGTCTAA TCATAGAGTA ACTAGGTTTA AAAGATTTAT CTCGCGATTT ATAGGTAAAC 17001
|| ||||||| |||| || | ||||| | | |||| ||| | ||||| | | | | ||||||
TAGTGTCTAA TCATGGACCA ACTAGACTCA AAAGGTTTGT CTCGCAAAAT ACATGTAAAC 587
TGTGCAATTA GTTTTTATTT TTGTATATAT TTAATGCTT 17040
||||||||| ||| || ||| || | ||||| ||||||||
TGTGCAATTG GTTATT-TTT TTATCTATAT TTAATGCTC 625
********************************************************************************
EST sequence 88 +strand (File: 13469214+)
1 TCTGACAAGA GCAACGAAGA GAATAATTGA TCTACAGTTT CTTTCCCCCG TCTGAAACTT
61 TGGTTAGCTT AAATCTGGGA CACGTATTGG AACAGGAGTA CCATGGGAGT CTGCACTGCA
121 AAAAAAAAAT GCAGATTATC GATCTTAGAT AGAAGGAAAC ATAGTGGGGG GGAAAGGAAC
181 CTTTTGTTTT CTTTTACTAC AGAAGTATCA ATTCGTGCGT TTGTCCCGGT GTTAGTTTCT
241 TCAGGAAACG GACATTGAAC TTAACAGTGC AATTTTCAGA CTTTGCAGCA AGTGCCATCA
301 GACCACTCCA TTCTGTGTAG ACTCGGCCCT CAGGACGTTG TGGCCAACCT GACTATTCAC
361 ATCTTTTGTG CGCCGCCCGT TTCACTTTCG TGGTGTTTCC TTGTAGCCTT TTTTGTCTGC
421 CATGTTTGCT TGTTGCCAGA CGCTGAATCA GGCACGGCGG GCCTTGTTTA GTTCCAAAAT
481 ATTTTGCAAA ATCGACACTG TAGCTCTTTC GTTTGTATTT GACAAATATT GTCTAATCAT
541 AGACTAACTA GGTTC
Predicted gene structure (within gDNA segment 14280 to 17323):
Exon 1 14280 14311 ( 32 n); cDNA 379 409 ( 31 n); score: 0.656
Intron 1 14312 14527 ( 216 n); Pd: 0.979 (s: 0), Pa: 0.640 (s: 0)
Exon 2 14528 14537 ( 10 n); cDNA 410 419 ( 10 n); score: 0.800
Intron 2 14538 14854 ( 317 n); Pd: 0.000 (s: 0), Pa: 0.442 (s: 0)
Exon 3 14855 14879 ( 25 n); cDNA 420 439 ( 20 n); score: 0.720
Intron 3 14880 15883 (1004 n); Pd: 0.978 (s: 0), Pa: 0.361 (s: 0)
Exon 4 15884 15903 ( 20 n); cDNA 440 459 ( 20 n); score: 0.500
Intron 4 15904 16874 ( 971 n); Pd: 0.991 (s: 0), Pa: 0.000 (s: 0.74)
Exon 5 16875 16970 ( 96 n); cDNA 460 555 ( 96 n); score: 0.833
MATCH 21326110+ 13469214+ 0.833 183 0.330 C
PGS_21326110+_13469214+ (14280 14311,14528 14537,14855 14879,15884 15903,16875 16970)
Alignment (genomic DNA sequence = upper lines):
TTTTCATCCT TGTGGGGATT ACCTTTTAGC AGGTACTATG ATCTTTTCAC TAAATTTAAA 14339
||||| | |||| | || |||| ||||
GTTTCACTTT CGTGGTG-TT TCCTTGTAGC CT........ .......... .......... 409
TTTGATTTCT AGTTCTGCTG TGATTAACTG ATTCTTGATG TCTGATATCA GTTTGATATG 14399
.......... .......... .......... .......... .......... .......... 409
CTCTGATTTT TATGCATTAT AAGTTGTTAA CATGTTTTCA GTTGTTATCT GTAAAGTAAT 14459
.......... .......... .......... .......... .......... .......... 409
TTAATCATTT CACCAAAACA ATTTGATATT TGGGCTTAAG AATTTGGATT TCGTTCCTGG 14519
.......... .......... .......... .......... .......... .......... 409
ATCAACAGTT TCTGTCTCGT GGGCATTTGA AAAATACTGC AAGCATATCG TATGGAATTT 14579
|| | |||||
........TT TTTGTCTG.. .......... .......... .......... .......... 419
TCTTCTTACA TATAGTCAAA TATTAACATT CAAATATGTA TTTTTTTTAA AAAAACTCAT 14639
.......... .......... .......... .......... .......... .......... 419
TTTCATATAT TTGGAAGCAA GTGACACTGA TAAAATTATT TGCAGGGACT GATCACCCAG 14699
.......... .......... .......... .......... .......... .......... 419
TTGCTCATTT ATATGATATA AATACTTTTA CATGCTACTT ATCAGCAAAT GCACAGGATT 14759
.......... .......... .......... .......... .......... .......... 419
CTAGTTCTCC CATTAACCAG GTAGCTTTTC TCTTTCCTTC TGATTCACAA GCATTAGATT 14819
.......... .......... .......... .......... .......... .......... 419
GCATTGGTTA TATTCTCATC AAAGTTCTCC GCCAGCCATG CTTACTGATG TTGCTGCCAG 14879
||||| || || ||| ||||||
.......... .......... .......... .....CCATG -TT--TG--C TTGTTGCCAG 439
GTACGCTACT CCTGTACTGG GAGCTTGTAT GTGACTGCTT CTAAAGATGG TTCTCTGCGC 14939
.......... .......... .......... .......... .......... .......... 439
ATTTGGGATG GAGTATCTGC TGAATGTGTT CGACCTATTA TTGGAGCACA TGGATCTGCA 14999
.......... .......... .......... .......... .......... .......... 439
GAAGCTACTA GCGCAATTTT CACCAGAGAT GAGAGGTAAG CGAGCTACCA GCATGTCTAA 15059
.......... .......... .......... .......... .......... .......... 439
GGTGCTCTTC CCTCAAGATA AAATCCAGTC ATTGTTTGGT TTGAAGAACA GAGAGAAAGG 15119
.......... .......... .......... .......... .......... .......... 439
CATATGCTGT ATGATTCAAG ACAGTAACTA CTTCAAACCC TGTTTGGAAT GTGGGAATCT 15179
.......... .......... .......... .......... .......... .......... 439
TGTAGTGATT CTGAATGATT TATAACATGT CCTGGATAAT TTCCTGTGTT TCAGACGTGT 15239
.......... .......... .......... .......... .......... .......... 439
CGTAACTTTA TAACACGAAT AACTCTTTCT CCTTTACCCT ACTATTTCAC CACTAAACAA 15299
.......... .......... .......... .......... .......... .......... 439
CTAACTTGCC TATAAACACT TTTTAGACTT CTTCTGAAAG GCCTAGTGTT TATGTGGTTA 15359
.......... .......... .......... .......... .......... .......... 439
TATGCAGCGT GAATGCACTT GCATATAAGA TTGATCTAAA AAATTGATGT AGTGAACTTT 15419
.......... .......... .......... .......... .......... .......... 439
GACTACCCGA AGTATATGCT TAGATAGTTC ATGGATTTCT TTCATAAAAC TGCACACTGT 15479
.......... .......... .......... .......... .......... .......... 439
ATTCTGGTTA TCTGTTATGA AGTTTACTAC GTTCTTTCAG GTATGTCCTA TCTTGTGGGA 15539
.......... .......... .......... .......... .......... .......... 439
AAGATTCTTG TGTCAAGTTA TGGGAAGTTG GCACTGGACG ACTTGTGAAG CAATATGCAG 15599
.......... .......... .......... .......... .......... .......... 439
GAGCCATTCG CAGACAATTT CGTTGTCAGG TTAGTTTCTC TGTGTTTCTA TAAGATTATT 15659
.......... .......... .......... .......... .......... .......... 439
ATTTTTTCCT GATTTAAATT TACTCGTGTG CCATATATAT TATTTTTACC CAAAATTTTA 15719
.......... .......... .......... .......... .......... .......... 439
GGAAACAAAA TATTGCAATT CTTTAATTTG AAAATAGGCT GGTTTGAGCT TGCAGCTTAG 15779
.......... .......... .......... .......... .......... .......... 439
GATAACAACA TACCTAACCT TGCTATGATA GACAATAAAT ATGATAATAA CTGTTCTTAC 15839
.......... .......... .......... .......... .......... .......... 439
TATCCAGGCT GTCTTCAATG AAACCGAAGA ATTTGTTCTA TCAGTTGATG AACAAAACAA 15899
| || || | ||
.......... .......... .......... .......... ....ACGCTG AATCAGGCAC 455
TGAGGTAAAT TCCAAATTGA GAACAGTATA TATATTTGTA TTTCAGCAAG CTTAACTATG 15959
| |
GGCG...... .......... .......... .......... .......... .......... 459
ATACGTCACT CTTCAGGTTG TCGTCTGGGA TGCACTTACT GCAGAAAAGG TTGCAAGATT 16019
.......... .......... .......... .......... .......... .......... 459
GCCCTCTGGC AGCACTGGTG CTCCCAGATG GCTCGACCAC TCCCCAGTTG AACCAGTTTT 16079
.......... .......... .......... .......... .......... .......... 459
TGTTATTTGT GGAAATGATA GATCGATCAG ATTCTGGAAA CAAACCGTAT AGCTTGTAGA 16139
.......... .......... .......... .......... .......... .......... 459
TTCAACCATT CAAATCAAAA GTATGCTTTC AGTATTACGT TTCAGGAGGA ATGTGCTCAT 16199
.......... .......... .......... .......... .......... .......... 459
GTAACTTTAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTATTG GAAACTGCAT 16259
.......... .......... .......... .......... .......... .......... 459
AAGCAATTGA TTGATCTAAT AGCAAACCCC AATGATATGT TTTTTTTTTG GCTCTGCATA 16319
.......... .......... .......... .......... .......... .......... 459
GCTGATGACA GTTGTATGAA CCCTTGACCT GATTCTTATT GGTCAGGCCC TTTTCGATGA 16379
.......... .......... .......... .......... .......... .......... 459
TTTGCTATTT TATCCCAATT GTGGATTGCG GAATATATTT CTTCTTCGAA TGTAATGATG 16439
.......... .......... .......... .......... .......... .......... 459
GTCTCGCCCT ACCACATGTG TGATAGCCTA TAAAAGTTCT ACAACACATT ATTGCATTTC 16499
.......... .......... .......... .......... .......... .......... 459
ACTTAGGGCA TGTTTAGATT GAAGATGAAA ATTTTTTAGG TCACATCGGA TATGTCGGAA 16559
.......... .......... .......... .......... .......... .......... 459
GGATGTCGGG AGGGGTTTTT AAAAACTAAT AAAAAAAACA AATTACATAA CTCGTCAGGA 16619
.......... .......... .......... .......... .......... .......... 459
AACTGCAAGA CGAATCTATT AAGTATAATT AATCTATTAT TAGCACATGT GGGTTACTGT 16679
.......... .......... .......... .......... .......... .......... 459
AGCACTTAAG GCTAATCATG GACTAACTAG GCTTAAAAAA TTCATCTCGC GATTTTCAAC 16739
.......... .......... .......... .......... .......... .......... 459
CAAACTGTGT AATTATTTTT TATCTACATT TAATGTTTTA TGTATGTGTC TAAAGATTCA 16799
.......... .......... .......... .......... .......... .......... 459
ATGTGATGGA TGAAAATTTT TTAGGTGGGA ACTAAACAGG GCCTTATATT TTTTAAAAAA 16859
.......... .......... .......... .......... .......... .......... 459
GATGTGCAAG TGTCAGGCCT TGTTTAGTTT CGAAAACTTT TTGGTTTTTG AGACTGTAGC 16919
||||| ||||||||| | ||| ||| | | | | ||||||||
.......... .....GGCCT TGTTTAGTTC CAAAATATTT TGCAAAATCG ACACTGTAGC 504
ACTTTCGTTT TTATTTGACA AATATTGTCT AATCATAGAG TAACTAGGTT T 16970
||||||||| ||||||||| |||||||||| ||||||||| ||||||||||
TCTTTCGTTT GTATTTGACA AATATTGTCT AATCATAGAC TAACTAGGTT C 555
********************************************************************************
EST sequence 133 -strand (File: 12027888-)
1 ATCCCCCGCA AAAATCCCCG CCAGGACCTC TTAGTTGCTT GCCCAATCAA ACCCAGGTGC
61 CGCTACTCGG GGTACTTGGG AGCCATGTAT GTGACTGCTT CTAAGGATGT TCTCTGCGCA
121 TCTTGGGATG GAGTATCTTG CTGAATGTGT TCGTCCCCAT AATTGGGGCA CATGGATCTG
181 TAGAAGCTAC TAGTGCAATT TTCACCAAAG ACGAGAGGTA CATCCTATCC AGTGGGAAGG
241 ATTCGTGTAT AAAGTTATGG GAAGTTGGCA CCGGAAGACT TGTGAAGCAA TATCCAGGTG
301 TTGTTAATAC ACAATTCCGG TGTCAGGCTG TCTTCAACGA AACCGAGGAG TTTGTACTAT
361 CAACCGACGA GCAAAACAAC GAGGTTGTCG TCTGGGACGC CCTTACTTCT GAAAGGGTGG
421 CAAGATTGCC GTCTGGCCAC ACCGGCGCCC CTAGGTGGCT GGAGCACTCC CCTGTAGAGC
481 CAGTGTTTGT TACATGCGGA AACGATCGAT CCGTCAGATT CTGGAAATAA ACGGTGTAGA
541 TTCAATTCAA CCCTGGCATT TAAATCATGA AGTTTGTTGT ATCATGAGTA CTTCAGGGTA
601 AAAGAAAGGA ATACTTGTAA TTGTAGTGGC TGTACTTATA CATGCTGTTG ATACATCTTC
661 TTCTAAAAAA AAAAAAAAAA AAA
Predicted gene structure (within gDNA segment 14175 to 17199):
Exon 1 14897 15034 ( 138 n); cDNA 77 217 ( 141 n); score: 0.862
Intron 1 15035 15519 ( 485 n); Pd: 0.794 (s: 0.92), Pa: 0.933 (s: 0.84)
Exon 2 15520 15628 ( 109 n); cDNA 218 326 ( 109 n); score: 0.807
Intron 2 15629 15846 ( 218 n); Pd: 1.000 (s: 0.78), Pa: 0.995 (s: 0.82)
Exon 3 15847 15903 ( 57 n); cDNA 327 383 ( 57 n); score: 0.825
Intron 3 15904 15975 ( 72 n); Pd: 0.991 (s: 0.80), Pa: 0.993 (s: 0.86)
Exon 4 15976 16159 ( 184 n); cDNA 384 565 ( 182 n); score: 0.777
PPA cDNA 665 683
MATCH 21326110+ 12027888- 0.814 488 0.714 C
PGS_21326110+_12027888- (14897 15034,15520 15628,15847 15903,15976 16159)
Alignment (genomic DNA sequence = upper lines):
TGGGAG-CTT GTATGTGACT GCTTCTAAAG ATGGTTCTCT GCGCAT-TTG GGATGGAGTA 14954
|||||| | | |||||||||| |||||||| | || ||||||| |||||| ||| ||||||||||
TGGGAGCCAT GTATGTGACT GCTTCTAAGG AT-GTTCTCT GCGCATCTTG GGATGGAGTA 135
TC-TGCTGAA TGTGTTCG-A CCTATTATTG GAGCACATGG ATCTGCAGAA GCTACTAGCG 15012
|| ||||||| |||||||| || || |||| | |||||||| ||||| |||| |||||||| |
TCTTGCTGAA TGTGTTCGTC CCCATAATTG GGGCACATGG ATCTGTAGAA GCTACTAGTG 195
CAATTTTCAC CAGAGATGAG AGGTAAGCGA GCTACCAGCA TGTCTAAGGT GCTCTTCCCT 15072
|||||||||| || ||| ||| ||
CAATTTTCAC CAAAGACGAG AG........ .......... .......... .......... 217
CAAGATAAAA TCCAGTCATT GTTTGGTTTG AAGAACAGAG AGAAAGGCAT ATGCTGTATG 15132
.......... .......... .......... .......... .......... .......... 217
ATTCAAGACA GTAACTACTT CAAACCCTGT TTGGAATGTG GGAATCTTGT AGTGATTCTG 15192
.......... .......... .......... .......... .......... .......... 217
AATGATTTAT AACATGTCCT GGATAATTTC CTGTGTTTCA GACGTGTCGT AACTTTATAA 15252
.......... .......... .......... .......... .......... .......... 217
CACGAATAAC TCTTTCTCCT TTACCCTACT ATTTCACCAC TAAACAACTA ACTTGCCTAT 15312
.......... .......... .......... .......... .......... .......... 217
AAACACTTTT TAGACTTCTT CTGAAAGGCC TAGTGTTTAT GTGGTTATAT GCAGCGTGAA 15372
.......... .......... .......... .......... .......... .......... 217
TGCACTTGCA TATAAGATTG ATCTAAAAAA TTGATGTAGT GAACTTTGAC TACCCGAAGT 15432
.......... .......... .......... .......... .......... .......... 217
ATATGCTTAG ATAGTTCATG GATTTCTTTC ATAAAACTGC ACACTGTATT CTGGTTATCT 15492
.......... .......... .......... .......... .......... .......... 217
GTTATGAAGT TTACTACGTT CTTTCAGGTA TGTCCTATCT TGTGGGAAAG ATTCTTGTGT 15552
||| ||||||| ||||||| | |||| ||| |
.......... .......... .......GTA CATCCTATCC AGTGGGAAGG ATTCGTGTAT 250
CAAGTTATGG GAAGTTGGCA CTGGACGACT TGTGAAGCAA TATGCAGGAG CCATTCGCAG 15612
||||||||| |||||||||| | ||| |||| |||||||||| ||| |||| | || |
AAAGTTATGG GAAGTTGGCA CCGGAAGACT TGTGAAGCAA TATCCAGGTG TTGTTAATAC 310
ACAATTTCGT TGTCAGGTTA GTTTCTCTGT GTTTCTATAA GATTATTATT TTTTCCTGAT 15672
|||||| || ||||||
ACAATTCCGG TGTCAG.... .......... .......... .......... .......... 326
TTAAATTTAC TCGTGTGCCA TATATATTAT TTTTACCCAA AATTTTAGGA AACAAAATAT 15732
.......... .......... .......... .......... .......... .......... 326
TGCAATTCTT TAATTTGAAA ATAGGCTGGT TTGAGCTTGC AGCTTAGGAT AACAACATAC 15792
.......... .......... .......... .......... .......... .......... 326
CTAACCTTGC TATGATAGAC AATAAATATG ATAATAACTG TTCTTACTAT CCAGGCTGTC 15852
||||||
.......... .......... .......... .......... .......... ....GCTGTC 332
TTCAATGAAA CCGAAGAATT TGTTCTATCA GTTGATGAAC AAAACAATGA GGTAAATTCC 15912
||||| |||| |||| || || ||| |||||| || || | ||||||| || |
TTCAACGAAA CCGAGGAGTT TGTACTATCA ACCGACGAGC AAAACAACGA G......... 383
AAATTGAGAA CAGTATATAT ATTTGTATTT CAGCAAGCTT AACTATGATA CGTCACTCTT 15972
.......... .......... .......... .......... .......... .......... 383
CAGGTTGTCG TCTGGGATGC ACTTACTGCA GAAAAGGTTG CAAGATTGCC CTCTGGCAGC 16032
||||||| ||||||| || |||||| | |||| ||| | |||||||||| |||||| |
...GTTGTCG TCTGGGACGC CCTTACTTCT GAAAGGGTGG CAAGATTGCC GTCTGGCCAC 440
ACTGGTGCTC CCAGATGGCT CGACCACTCC CCAGTTGAAC CAGTTTTTGT TATTTGTGGA 16092
|| || || | | || ||||| || |||||| || || || | |||| ||||| || || |||
ACCGGCGCCC CTAGGTGGCT GGAGCACTCC CCTGTAGAGC CAGTGTTTGT TACATGCGGA 500
AATGATAGAT CGATCAGATT CTGGAAACAA ACCGTATAGC TTGTAGATTC AACCATTCAA 16152
|| ||| ||| | ||||||| ||||||| || || || ||| || | |||| |||| | |
AACGATCGAT CCGTCAGATT CTGGAAATAA ACGGTGTAGA TT-CA-ATTC AACCCTGGCA 558
ATCAAAA 16159
| |||
TTTAAAT 565
********************************************************************************
EST sequence 135 -strand (File: 12038224-)
1 GGAGGCATTG TATGTGACTT GCTTCTTAAG GATGGTTCTN TTGCGCATCT GGGATGGAGG
61 TATCTTGCTG AATGTGTTCG TCCCATAATT GGGGCACATG GATCTTGTAG AAGCTACTTA
121 GTGCAATTTT CACCCAAAGA CGAGAGGTAC ATCCTATCCA GTGGGAAGGA TTCGTGTATA
181 AAGTTATGGG AAGTTGGCAC CGGAAGACTT GTGAAGCAAT ATCCAGGTGT TGTTAATACA
241 CAATTCCGGT GTCAGGCTGT CTTCAACGAA ACCGAGGAGT TTGTACTATC AACCGACGAG
301 CAAAACAACG AGGTTGTCGT NTGGGACGCC CTTACTTCTG AAAGGGTGGC AAGATTGCCG
361 TCTGGCCACA CCGGCGCCCC TAGGTGGCTG GAGCACTCCC CTGTAGAGCC AGTGTTTGTT
421 ACATGCGGAA ACGATCGATC CGTCAGATTC TGGAAATAAA CGGTGTAGAT TCAATTCAAC
481 CCTGGCATTT AAATCATGAA GTTTGTTGTA TCATGAGTAC TTCAGGGTAA AAGAAAGGAA
541 TACTTGTAAT TGTAGTGGCT GTACTTATAC ATGCTGTTGA TACATGGTGN TGTAAAAA
Predicted gene structure (within gDNA segment 14564 to 17129):
Exon 1 14898 15034 ( 137 n); cDNA 1 146 ( 146 n); score: 0.774
Intron 1 15035 15519 ( 485 n); Pd: 0.794 (s: 0.79), Pa: 0.933 (s: 0.84)
Exon 2 15520 15628 ( 109 n); cDNA 147 255 ( 109 n); score: 0.807
Intron 2 15629 15846 ( 218 n); Pd: 1.000 (s: 0.78), Pa: 0.995 (s: 0.82)
Exon 3 15847 15903 ( 57 n); cDNA 256 312 ( 57 n); score: 0.825
Intron 3 15904 15975 ( 72 n); Pd: 0.991 (s: 0.80), Pa: 0.993 (s: 0.84)
Exon 4 15976 16159 ( 184 n); cDNA 313 494 ( 182 n); score: 0.772
MATCH 21326110+ 12038224- 0.786 487 0.814 C
PGS_21326110+_12038224- (14898 15034,15520 15628,15847 15903,15976 16159)
Alignment (genomic DNA sequence = upper lines):
GGGAGC-TTG TATGTGAC-T GCTTCTAAA- GATGGTTCTC -TGCGCATTT GGGATGGAG- 14952
|| || ||| |||||||| | |||||| || ||||||||| ||||||| | |||||||||
GGAGGCATTG TATGTGACTT GCTTCTTAAG GATGGTTCTN TTGCGCATCT GGGATGGAGG 60
TATC-TGCTG AATGTGTTCG ACCTATTATT GGAGCACATG GATC-TGCAG AAGCTAC-TA 15009
|||| ||||| |||||||||| || || ||| || ||||||| |||| || || ||||||| ||
TATCTTGCTG AATGTGTTCG TCCCATAATT GGGGCACATG GATCTTGTAG AAGCTACTTA 120
GCGCAATTTT CA-CCAGAGA TGAGAGGTAA GCGAGCTACC AGCATGTCTA AGGTGCTCTT 15068
| |||||||| || ||| ||| |||||
GTGCAATTTT CACCCAAAGA CGAGAG.... .......... .......... .......... 146
CCCTCAAGAT AAAATCCAGT CATTGTTTGG TTTGAAGAAC AGAGAGAAAG GCATATGCTG 15128
.......... .......... .......... .......... .......... .......... 146
TATGATTCAA GACAGTAACT ACTTCAAACC CTGTTTGGAA TGTGGGAATC TTGTAGTGAT 15188
.......... .......... .......... .......... .......... .......... 146
TCTGAATGAT TTATAACATG TCCTGGATAA TTTCCTGTGT TTCAGACGTG TCGTAACTTT 15248
.......... .......... .......... .......... .......... .......... 146
ATAACACGAA TAACTCTTTC TCCTTTACCC TACTATTTCA CCACTAAACA ACTAACTTGC 15308
.......... .......... .......... .......... .......... .......... 146
CTATAAACAC TTTTTAGACT TCTTCTGAAA GGCCTAGTGT TTATGTGGTT ATATGCAGCG 15368
.......... .......... .......... .......... .......... .......... 146
TGAATGCACT TGCATATAAG ATTGATCTAA AAAATTGATG TAGTGAACTT TGACTACCCG 15428
.......... .......... .......... .......... .......... .......... 146
AAGTATATGC TTAGATAGTT CATGGATTTC TTTCATAAAA CTGCACACTG TATTCTGGTT 15488
.......... .......... .......... .......... .......... .......... 146
ATCTGTTATG AAGTTTACTA CGTTCTTTCA GGTATGTCCT ATCTTGTGGG AAAGATTCTT 15548
||| |||| ||| ||||| || ||||| |
.......... .......... .......... .GTACATCCT ATCCAGTGGG AAGGATTCGT 175
GTGTCAAGTT ATGGGAAGTT GGCACTGGAC GACTTGTGAA GCAATATGCA GGAGCCATTC 15608
|| | ||||| |||||||||| ||||| ||| |||||||||| ||||||| || || | ||
GTATAAAGTT ATGGGAAGTT GGCACCGGAA GACTTGTGAA GCAATATCCA GGTGTTGTTA 235
GCAGACAATT TCGTTGTCAG GTTAGTTTCT CTGTGTTTCT ATAAGATTAT TATTTTTTCC 15668
| |||||| || ||||||
ATACACAATT CCGGTGTCAG .......... .......... .......... .......... 255
TGATTTAAAT TTACTCGTGT GCCATATATA TTATTTTTAC CCAAAATTTT AGGAAACAAA 15728
.......... .......... .......... .......... .......... .......... 255
ATATTGCAAT TCTTTAATTT GAAAATAGGC TGGTTTGAGC TTGCAGCTTA GGATAACAAC 15788
.......... .......... .......... .......... .......... .......... 255
ATACCTAACC TTGCTATGAT AGACAATAAA TATGATAATA ACTGTTCTTA CTATCCAGGC 15848
||
.......... .......... .......... .......... .......... ........GC 257
TGTCTTCAAT GAAACCGAAG AATTTGTTCT ATCAGTTGAT GAACAAAACA ATGAGGTAAA 15908
||||||||| |||||||| | | ||||| || |||| || || ||||||| | |||
TGTCTTCAAC GAAACCGAGG AGTTTGTACT ATCAACCGAC GAGCAAAACA ACGAG..... 312
TTCCAAATTG AGAACAGTAT ATATATTTGT ATTTCAGCAA GCTTAACTAT GATACGTCAC 15968
.......... .......... .......... .......... .......... .......... 312
TCTTCAGGTT GTCGTCTGGG ATGCACTTAC TGCAGAAAAG GTTGCAAGAT TGCCCTCTGG 16028
||| ||||| |||| | || ||||| | | |||| | || ||||||| |||| |||||
.......GTT GTCGTNTGGG ACGCCCTTAC TTCTGAAAGG GTGGCAAGAT TGCCGTCTGG 365
CAGCACTGGT GCTCCCAGAT GGCTCGACCA CTCCCCAGTT GAACCAGTTT TTGTTATTTG 16088
| ||| || || || || | |||| || || |||||| || || ||||| | |||||| ||
CCACACCGGC GCCCCTAGGT GGCTGGAGCA CTCCCCTGTA GAGCCAGTGT TTGTTACATG 425
TGGAAATGAT AGATCGATCA GATTCTGGAA ACAAACCGTA TAGCTTGTAG ATTCAACCAT 16148
||||| ||| |||| ||| |||||||||| | |||| || ||| || | |||||||| |
CGGAAACGAT CGATCCGTCA GATTCTGGAA ATAAACGGTG TAGATT-CA- ATTCAACCCT 483
TCAAATCAAA A 16159
| | |||
GGCATTTAAA T 494
********************************************************************************
EST sequence 134 -strand (File: 12038221-)
1 GTATGTGACT GCTTCNTAAG GATGGTTCTT CTTGCGCATT CTTGGGATGG GAGTATCTGC
61 CTGAATGTGT TCGTCCCCAT AATTGGGGCA CATGGATCTG TAGAAGCTAC TAGTGCAATT
121 TTCACCAAAG ACGAGAGGTA CATCCTATCC AGTGGGAAGG ATTCGTGTAT AAAGTTATGG
181 GAAGTTGGCA CCGGAAGACT TGTGAAGCAA TATCCAGGTG TTGTTAATAC ACAATTCCGG
241 TGTCAGGCTG TCTTCAACGA AACCGAGGAG TTTGTACTAT CAACCGACGA GCAAAACAAC
301 GAGGTTGTCG TNTGGGACGC CCTTACTTCT GAAAGGGTGG CAAGATTGCC GTCTGGCCAC
361 ACCGGCGCCC CTAGGTGGCT GGAGCACTCC CCTGTAGAGC CAGTGTTTGT TACATGCGGA
421 AACGATCGAT CCGTCAGATT CTGGAAATNA ACGGTGTAGA TTCAATTCAA CCCTGGCATT
481 TAAATCATGA AGTTTGTTGT ATCATGAGTA CTTCAGGGTA AAAGAAAGGA ATACTTGTAA
541 TTGTAGTGGC TGTACTTATA CATGCTGTTG ATACATCTTC TTCTAAAAAA AAAAAAAAAA
601 AAAAAAAAA
Predicted gene structure (within gDNA segment 14601 to 17229):
Exon 1 14906 15034 ( 129 n); cDNA 1 137 ( 137 n); score: 0.806
Intron 1 15035 15519 ( 485 n); Pd: 0.794 (s: 0.92), Pa: 0.933 (s: 0.84)
Exon 2 15520 15628 ( 109 n); cDNA 138 246 ( 109 n); score: 0.807
Intron 2 15629 15846 ( 218 n); Pd: 1.000 (s: 0.78), Pa: 0.995 (s: 0.82)
Exon 3 15847 15903 ( 57 n); cDNA 247 303 ( 57 n); score: 0.825
Intron 3 15904 15975 ( 72 n); Pd: 0.991 (s: 0.80), Pa: 0.993 (s: 0.84)
Exon 4 15976 16159 ( 184 n); cDNA 304 485 ( 182 n); score: 0.766
PPA cDNA 585 609
MATCH 21326110+ 12038221- 0.793 479 0.787 C
PGS_21326110+_12038221- (14906 15034,15520 15628,15847 15903,15976 16159)
Alignment (genomic DNA sequence = upper lines):
GTATGTGACT GCTTC-TAAA GATGGTTC-T C-TGCGCA-T -TTGGGATG- GAGTATCTGC 14959
|||||||||| ||||| ||| |||||||| | | |||||| | |||||||| ||||||||||
GTATGTGACT GCTTCNTAAG GATGGTTCTT CTTGCGCATT CTTGGGATGG GAGTATCTGC 60
-TGAATGTGT TCG-ACCTAT TATTGGAGCA CATGGATCTG CAGAAGCTAC TAGCGCAATT 15017
||||||||| ||| || || ||||| ||| |||||||||| ||||||||| ||| ||||||
CTGAATGTGT TCGTCCCCAT AATTGGGGCA CATGGATCTG TAGAAGCTAC TAGTGCAATT 120
TTCACCAGAG ATGAGAGGTA AGCGAGCTAC CAGCATGTCT AAGGTGCTCT TCCCTCAAGA 15077
||||||| || | |||||
TTCACCAAAG ACGAGAG... .......... .......... .......... .......... 137
TAAAATCCAG TCATTGTTTG GTTTGAAGAA CAGAGAGAAA GGCATATGCT GTATGATTCA 15137
.......... .......... .......... .......... .......... .......... 137
AGACAGTAAC TACTTCAAAC CCTGTTTGGA ATGTGGGAAT CTTGTAGTGA TTCTGAATGA 15197
.......... .......... .......... .......... .......... .......... 137
TTTATAACAT GTCCTGGATA ATTTCCTGTG TTTCAGACGT GTCGTAACTT TATAACACGA 15257
.......... .......... .......... .......... .......... .......... 137
ATAACTCTTT CTCCTTTACC CTACTATTTC ACCACTAAAC AACTAACTTG CCTATAAACA 15317
.......... .......... .......... .......... .......... .......... 137
CTTTTTAGAC TTCTTCTGAA AGGCCTAGTG TTTATGTGGT TATATGCAGC GTGAATGCAC 15377
.......... .......... .......... .......... .......... .......... 137
TTGCATATAA GATTGATCTA AAAAATTGAT GTAGTGAACT TTGACTACCC GAAGTATATG 15437
.......... .......... .......... .......... .......... .......... 137
CTTAGATAGT TCATGGATTT CTTTCATAAA ACTGCACACT GTATTCTGGT TATCTGTTAT 15497
.......... .......... .......... .......... .......... .......... 137
GAAGTTTACT ACGTTCTTTC AGGTATGTCC TATCTTGTGG GAAAGATTCT TGTGTCAAGT 15557
||| ||| |||| |||| ||| ||||| ||| | ||||
.......... .......... ..GTACATCC TATCCAGTGG GAAGGATTCG TGTATAAAGT 175
TATGGGAAGT TGGCACTGGA CGACTTGTGA AGCAATATGC AGGAGCCATT CGCAGACAAT 15617
|||||||||| |||||| ||| ||||||||| |||||||| | ||| | || | |||||
TATGGGAAGT TGGCACCGGA AGACTTGTGA AGCAATATCC AGGTGTTGTT AATACACAAT 235
TTCGTTGTCA GGTTAGTTTC TCTGTGTTTC TATAAGATTA TTATTTTTTC CTGATTTAAA 15677
| || ||||| |
TCCGGTGTCA G......... .......... .......... .......... .......... 246
TTTACTCGTG TGCCATATAT ATTATTTTTA CCCAAAATTT TAGGAAACAA AATATTGCAA 15737
.......... .......... .......... .......... .......... .......... 246
TTCTTTAATT TGAAAATAGG CTGGTTTGAG CTTGCAGCTT AGGATAACAA CATACCTAAC 15797
.......... .......... .......... .......... .......... .......... 246
CTTGCTATGA TAGACAATAA ATATGATAAT AACTGTTCTT ACTATCCAGG CTGTCTTCAA 15857
| ||||||||||
.......... .......... .......... .......... .........G CTGTCTTCAA 257
TGAAACCGAA GAATTTGTTC TATCAGTTGA TGAACAAAAC AATGAGGTAA ATTCCAAATT 15917
|||||||| || ||||| | ||||| || || |||||| || |||
CGAAACCGAG GAGTTTGTAC TATCAACCGA CGAGCAAAAC AACGAG.... .......... 303
GAGAACAGTA TATATATTTG TATTTCAGCA AGCTTAACTA TGATACGTCA CTCTTCAGGT 15977
||
.......... .......... .......... .......... .......... ........GT 305
TGTCGTCTGG GATGCACTTA CTGCAGAAAA GGTTGCAAGA TTGCCCTCTG GCAGCACTGG 16037
|||||| ||| || || |||| || | |||| ||| |||||| ||||| |||| || ||| ||
TGTCGTNTGG GACGCCCTTA CTTCTGAAAG GGTGGCAAGA TTGCCGTCTG GCCACACCGG 365
TGCTCCCAGA TGGCTCGACC ACTCCCCAGT TGAACCAGTT TTTGTTATTT GTGGAAATGA 16097
|| || || ||||| || | ||||||| || || ||||| ||||||| | | ||||| ||
CGCCCCTAGG TGGCTGGAGC ACTCCCCTGT AGAGCCAGTG TTTGTTACAT GCGGAAACGA 425
TAGATCGATC AGATTCTGGA AACAAACCGT ATAGCTTGTA GATTCAACCA TTCAAATCAA 16157
| |||| || |||||||||| || ||| || ||| || | |||||||| | | | ||
TCGATCCGTC AGATTCTGGA AATNAACGGT GTAGATT-CA -ATTCAACCC TGGCATTTAA 483
AA 16159
|
AT 485
********************************************************************************
EST sequence 57 +strand (File: 14570760+)
1 GTATCTGCTG AATGTGTTCG ACCTATTATT GGAGCACATG GATCTGCAGA AGCTACTAGC
61 GCAATTTTCA CCAGAGATGA GAGGTATGTC CTATCTTGTG GGAAAGATTC TTGTGTCAAG
121 TTATGGGAAG TTGGCACTGG ACGACTTGTG AAGCAATATG CAGGAGCCAT TCGCAGACAA
181 TTTCGTTGTC AGGCTGTCTT CAATGAAACC GAAGAATTTG TTCTATCAGT TGATGAACAA
241 AACAATGAGG TTGTCGTCTG GGATGCACTT ACTGCAGAAA AGGTTGCAAG ATTGCCCTCT
301 GGCAGCACTG GTGCTCCCAG ATGGCTCGAC CACTCCCCAG TTGAACCAGT TTTTGTTATT
361 TGTGGAAATG ATAGATCGAT CAGATTCTGG AAACAAACCG TATAGCTTGT AGATTCAACC
421 ATTCAAATCA AAAGTATGCT TTCAGTATTA CGTTTCAGGA GGAATGTGCT CATGTAACTT
481 TAGTTGTATA TGGGAGAAAT TTGCATAAGC ATTTTTTTTA TTGGAAACTG CATAAGCAAT
541 TGATTGATCT AATAGCAAAC CCCAATGATA GTTTTTT
Predicted gene structure (within gDNA segment 14652 to 16636):
Exon 1 14952 15034 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000
Intron 1 15035 15519 ( 485 n); Pd: 0.794 (s: 1.00), Pa: 0.933 (s: 1.00)
Exon 2 15520 15628 ( 109 n); cDNA 84 192 ( 109 n); score: 1.000
Intron 2 15629 15846 ( 218 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00)
Exon 3 15847 15903 ( 57 n); cDNA 193 249 ( 57 n); score: 1.000
Intron 3 15904 15975 ( 72 n); Pd: 0.991 (s: 1.00), Pa: 0.993 (s: 1.00)
Exon 4 15976 16304 ( 329 n); cDNA 250 577 ( 328 n); score: 0.997
MATCH 21326110+ 14570760+ 0.998 578 1.002 C
PGS_21326110+_14570760+ (14952 15034,15520 15628,15847 15903,15976 16304)
Alignment (genomic DNA sequence = upper lines):
GTATCTGCTG AATGTGTTCG ACCTATTATT GGAGCACATG GATCTGCAGA AGCTACTAGC 15011
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTATCTGCTG AATGTGTTCG ACCTATTATT GGAGCACATG GATCTGCAGA AGCTACTAGC 60
GCAATTTTCA CCAGAGATGA GAGGTAAGCG AGCTACCAGC ATGTCTAAGG TGCTCTTCCC 15071
|||||||||| |||||||||| |||
GCAATTTTCA CCAGAGATGA GAG....... .......... .......... .......... 83
TCAAGATAAA ATCCAGTCAT TGTTTGGTTT GAAGAACAGA GAGAAAGGCA TATGCTGTAT 15131
.......... .......... .......... .......... .......... .......... 83
GATTCAAGAC AGTAACTACT TCAAACCCTG TTTGGAATGT GGGAATCTTG TAGTGATTCT 15191
.......... .......... .......... .......... .......... .......... 83
GAATGATTTA TAACATGTCC TGGATAATTT CCTGTGTTTC AGACGTGTCG TAACTTTATA 15251
.......... .......... .......... .......... .......... .......... 83
ACACGAATAA CTCTTTCTCC TTTACCCTAC TATTTCACCA CTAAACAACT AACTTGCCTA 15311
.......... .......... .......... .......... .......... .......... 83
TAAACACTTT TTAGACTTCT TCTGAAAGGC CTAGTGTTTA TGTGGTTATA TGCAGCGTGA 15371
.......... .......... .......... .......... .......... .......... 83
ATGCACTTGC ATATAAGATT GATCTAAAAA ATTGATGTAG TGAACTTTGA CTACCCGAAG 15431
.......... .......... .......... .......... .......... .......... 83
TATATGCTTA GATAGTTCAT GGATTTCTTT CATAAAACTG CACACTGTAT TCTGGTTATC 15491
.......... .......... .......... .......... .......... .......... 83
TGTTATGAAG TTTACTACGT TCTTTCAGGT ATGTCCTATC TTGTGGGAAA GATTCTTGTG 15551
|| |||||||||| |||||||||| ||||||||||
.......... .......... ........GT ATGTCCTATC TTGTGGGAAA GATTCTTGTG 115
TCAAGTTATG GGAAGTTGGC ACTGGACGAC TTGTGAAGCA ATATGCAGGA GCCATTCGCA 15611
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCAAGTTATG GGAAGTTGGC ACTGGACGAC TTGTGAAGCA ATATGCAGGA GCCATTCGCA 175
GACAATTTCG TTGTCAGGTT AGTTTCTCTG TGTTTCTATA AGATTATTAT TTTTTCCTGA 15671
|||||||||| |||||||
GACAATTTCG TTGTCAG... .......... .......... .......... .......... 192
TTTAAATTTA CTCGTGTGCC ATATATATTA TTTTTACCCA AAATTTTAGG AAACAAAATA 15731
.......... .......... .......... .......... .......... .......... 192
TTGCAATTCT TTAATTTGAA AATAGGCTGG TTTGAGCTTG CAGCTTAGGA TAACAACATA 15791
.......... .......... .......... .......... .......... .......... 192
CCTAACCTTG CTATGATAGA CAATAAATAT GATAATAACT GTTCTTACTA TCCAGGCTGT 15851
|||||
.......... .......... .......... .......... .......... .....GCTGT 197
CTTCAATGAA ACCGAAGAAT TTGTTCTATC AGTTGATGAA CAAAACAATG AGGTAAATTC 15911
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||
CTTCAATGAA ACCGAAGAAT TTGTTCTATC AGTTGATGAA CAAAACAATG AG........ 249
CAAATTGAGA ACAGTATATA TATTTGTATT TCAGCAAGCT TAACTATGAT ACGTCACTCT 15971
.......... .......... .......... .......... .......... .......... 249
TCAGGTTGTC GTCTGGGATG CACTTACTGC AGAAAAGGTT GCAAGATTGC CCTCTGGCAG 16031
|||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
....GTTGTC GTCTGGGATG CACTTACTGC AGAAAAGGTT GCAAGATTGC CCTCTGGCAG 305
CACTGGTGCT CCCAGATGGC TCGACCACTC CCCAGTTGAA CCAGTTTTTG TTATTTGTGG 16091
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CACTGGTGCT CCCAGATGGC TCGACCACTC CCCAGTTGAA CCAGTTTTTG TTATTTGTGG 365
AAATGATAGA TCGATCAGAT TCTGGAAACA AACCGTATAG CTTGTAGATT CAACCATTCA 16151
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAATGATAGA TCGATCAGAT TCTGGAAACA AACCGTATAG CTTGTAGATT CAACCATTCA 425
AATCAAAAGT ATGCTTTCAG TATTACGTTT CAGGAGGAAT GTGCTCATGT AACTTTAGTT 16211
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AATCAAAAGT ATGCTTTCAG TATTACGTTT CAGGAGGAAT GTGCTCATGT AACTTTAGTT 485
GTATATGGGA GAAATTTGCA TAAGCATTTT TTTTATTGGA AACTGCATAA GCAATTGATT 16271
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTATATGGGA GAAATTTGCA TAAGCATTTT TTTTATTGGA AACTGCATAA GCAATTGATT 545
GATCTAATAG CAAACCCCAA TGATATGTTT TTT 16304
|||||||||| |||||||||| ||||| |||| |||
GATCTAATAG CAAACCCCAA TGATA-GTTT TTT 577
********************************************************************************
EST sequence 37 +strand (File: 13586923+)
1 CTATTATTGG AGCACATGGA TCTGCAGAAG CTACTAGCGC AATTTTCACC AGAGATGAGA
61 GGTATGTCCT ATCTTGTGGG AAAGATTCTT GTGTCAAGTT ATGGGAAGTT GGCACTGGAC
121 GACTTGTGAA GCAATATGCA GGAGCCATTC GCAGACAATT TCGTTGTCAG GCTGTCTTCA
181 ATGAAACCGA AGAATTTGTT CTATCAGTTG ATGAACAAAA CAATGAGGTT GTCGTCTGGG
241 ATGCACTTAC TGCAGAAAAG GTTGCAAGAT TGCCCTCTGG CAGCACTGGT GCTCCCAGAT
301 GGCTCGACCA CTCCCCAGTT GAACCAGTTT TTGTTATTTG TGGAAATGAT AGATCGATCA
361 GATTCTGGAA ACAAACCGTA TAGCTTGTAG ATTCAACCAT TCAAATCAAA AGTATGCTTT
421 CAGTATTACG TTTCAGAGAG GAATGTGCTC ATGTAACTTT AGTTGTATAT GGAAG
Predicted gene structure (within gDNA segment 14674 to 16539):
Exon 1 14974 15034 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000
Intron 1 15035 15519 ( 485 n); Pd: 0.794 (s: 1.00), Pa: 0.933 (s: 1.00)
Exon 2 15520 15628 ( 109 n); cDNA 62 170 ( 109 n); score: 1.000
Intron 2 15629 15846 ( 218 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00)
Exon 3 15847 15903 ( 57 n); cDNA 171 227 ( 57 n); score: 1.000
Intron 3 15904 15975 ( 72 n); Pd: 0.991 (s: 1.00), Pa: 0.993 (s: 1.00)
Exon 4 15976 16222 ( 247 n); cDNA 228 475 ( 248 n); score: 0.988
MATCH 21326110+ 13586923+ 0.994 474 0.998 C
PGS_21326110+_13586923+ (14974 15034,15520 15628,15847 15903,15976 16222)
Alignment (genomic DNA sequence = upper lines):
CTATTATTGG AGCACATGGA TCTGCAGAAG CTACTAGCGC AATTTTCACC AGAGATGAGA 15033
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTATTATTGG AGCACATGGA TCTGCAGAAG CTACTAGCGC AATTTTCACC AGAGATGAGA 60
GGTAAGCGAG CTACCAGCAT GTCTAAGGTG CTCTTCCCTC AAGATAAAAT CCAGTCATTG 15093
|
G......... .......... .......... .......... .......... .......... 61
TTTGGTTTGA AGAACAGAGA GAAAGGCATA TGCTGTATGA TTCAAGACAG TAACTACTTC 15153
.......... .......... .......... .......... .......... .......... 61
AAACCCTGTT TGGAATGTGG GAATCTTGTA GTGATTCTGA ATGATTTATA ACATGTCCTG 15213
.......... .......... .......... .......... .......... .......... 61
GATAATTTCC TGTGTTTCAG ACGTGTCGTA ACTTTATAAC ACGAATAACT CTTTCTCCTT 15273
.......... .......... .......... .......... .......... .......... 61
TACCCTACTA TTTCACCACT AAACAACTAA CTTGCCTATA AACACTTTTT AGACTTCTTC 15333
.......... .......... .......... .......... .......... .......... 61
TGAAAGGCCT AGTGTTTATG TGGTTATATG CAGCGTGAAT GCACTTGCAT ATAAGATTGA 15393
.......... .......... .......... .......... .......... .......... 61
TCTAAAAAAT TGATGTAGTG AACTTTGACT ACCCGAAGTA TATGCTTAGA TAGTTCATGG 15453
.......... .......... .......... .......... .......... .......... 61
ATTTCTTTCA TAAAACTGCA CACTGTATTC TGGTTATCTG TTATGAAGTT TACTACGTTC 15513
.......... .......... .......... .......... .......... .......... 61
TTTCAGGTAT GTCCTATCTT GTGGGAAAGA TTCTTGTGTC AAGTTATGGG AAGTTGGCAC 15573
|||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
......GTAT GTCCTATCTT GTGGGAAAGA TTCTTGTGTC AAGTTATGGG AAGTTGGCAC 115
TGGACGACTT GTGAAGCAAT ATGCAGGAGC CATTCGCAGA CAATTTCGTT GTCAGGTTAG 15633
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||
TGGACGACTT GTGAAGCAAT ATGCAGGAGC CATTCGCAGA CAATTTCGTT GTCAG..... 170
TTTCTCTGTG TTTCTATAAG ATTATTATTT TTTCCTGATT TAAATTTACT CGTGTGCCAT 15693
.......... .......... .......... .......... .......... .......... 170
ATATATTATT TTTACCCAAA ATTTTAGGAA ACAAAATATT GCAATTCTTT AATTTGAAAA 15753
.......... .......... .......... .......... .......... .......... 170
TAGGCTGGTT TGAGCTTGCA GCTTAGGATA ACAACATACC TAACCTTGCT ATGATAGACA 15813
.......... .......... .......... .......... .......... .......... 170
ATAAATATGA TAATAACTGT TCTTACTATC CAGGCTGTCT TCAATGAAAC CGAAGAATTT 15873
||||||| |||||||||| ||||||||||
.......... .......... .......... ...GCTGTCT TCAATGAAAC CGAAGAATTT 197
GTTCTATCAG TTGATGAACA AAACAATGAG GTAAATTCCA AATTGAGAAC AGTATATATA 15933
|||||||||| |||||||||| ||||||||||
GTTCTATCAG TTGATGAACA AAACAATGAG .......... .......... .......... 227
TTTGTATTTC AGCAAGCTTA ACTATGATAC GTCACTCTTC AGGTTGTCGT CTGGGATGCA 15993
|||||||| ||||||||||
.......... .......... .......... .......... ..GTTGTCGT CTGGGATGCA 245
CTTACTGCAG AAAAGGTTGC AAGATTGCCC TCTGGCAGCA CTGGTGCTCC CAGATGGCTC 16053
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTACTGCAG AAAAGGTTGC AAGATTGCCC TCTGGCAGCA CTGGTGCTCC CAGATGGCTC 305
GACCACTCCC CAGTTGAACC AGTTTTTGTT ATTTGTGGAA ATGATAGATC GATCAGATTC 16113
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACCACTCCC CAGTTGAACC AGTTTTTGTT ATTTGTGGAA ATGATAGATC GATCAGATTC 365
TGGAAACAAA CCGTATAGCT TGTAGATTCA ACCATTCAAA TCAAAAGTAT GCTTTCAGTA 16173
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGGAAACAAA CCGTATAGCT TGTAGATTCA ACCATTCAAA TCAAAAGTAT GCTTTCAGTA 425
TTACGTTTCA G-GAGGAATG TGCTCATGTA ACTTTAGTTG TATATGGGAG 16222
|||||||||| | |||||||| |||||||||| |||||||||| ||||||| ||
TTACGTTTCA GAGAGGAATG TGCTCATGTA ACTTTAGTTG TATATGGAAG 475
********************************************************************************
EST sequence 122 +strand (File: 25807618+)
1 TTTTTTTTTT TTTTTTTTTT TTTTTATTTA AACTTTTTTC TTCAAACTTT CAACTTTTCC
61 GTCACATCAA ATGTTTGAAT ACATATATGG AGCATTAAAT ATGGACGAAA AAAACCAATT
121 ACACAGTTTG CATGTAAATT GCGAGACGAA TCTTTTGAGC CTAATTACGT CTTGATTTGA
181 CAATGTGGGG CTACAGTAAA CATTTGCTAA TGACGAATTA ATTAGGCTTA ATAGATTCGT
241 CTCGCAGTTT ACAGGCGAAA TCTGTAATCT GTTTTGTTAT TAGTCTACGT TTAATACTTC
301 AAATGTGTCC GTATACTTCA AAAATTTTAT TTTGGCACAC GAACTAAACA CAGCCAAACT
361 CAACAAAATT ATTCAGCAAT GTTATCTCTA CAAGAAATGA TGCAGCATTT GGCAGTGCTA
421 AATTCGGCTT GAATCCCTCC CAAATATGAA CCTCCGAGTC CAGTCGGATA CCACCAGCAT
481 CCGTGTGCGC CAACTCACTT GTTTGCCTGC ATATACGGAG TACCAGAGCC ACTGAGTGCT
541 ATGGCCCATG GAAACCCAGT CCCCTGGGAG CTCTGCAGCA GCTTGCTCTC CACCCAAGGG
601 TGCAAATTGC CCAAGATGCT TGTACCGGAA TGGGCGGAAA TTGTGCCATC CTGACCCTGG
661 TCCTGTCATG CCCAACGGAC CTTTTGGA
Predicted gene structure (within gDNA segment 17789 to 14092):
Exon 1 17066 16939 ( 128 n); cDNA 64 188 ( 125 n); score: 0.750
Intron 1 16938 16684 ( 255 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.78)
Exon 2 16683 16583 ( 101 n); cDNA 189 285 ( 97 n); score: 0.782
Intron 2 16582 16478 ( 105 n); Pd: 0.000 (s: 0.78), Pa: 0.593 (s: 0)
Exon 3 16477 16452 ( 26 n); cDNA 286 307 ( 22 n); score: 0.692
Intron 3 16451 15877 ( 575 n); Pd: 0.000 (s: 0), Pa: 0.884 (s: 0)
Exon 4 15876 15865 ( 12 n); cDNA 308 319 ( 12 n); score: 0.583
Intron 4 15864 15707 ( 158 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0)
Exon 5 15706 15680 ( 27 n); cDNA 320 345 ( 26 n); score: 0.741
Intron 5 15679 15647 ( 33 n); Pd: 0.000 (s: 0), Pa: 0.334 (s: 0)
Exon 6 15646 15628 ( 19 n); cDNA 346 364 ( 19 n); score: 0.789
Intron 6 15627 15223 ( 405 n); Pd: 0.000 (s: 0), Pa: 0.033 (s: 0)
Exon 7 15222 15201 ( 22 n); cDNA 365 385 ( 21 n); score: 0.818
PPA cDNA 29 1
MATCH 21326110- 25807618+ 0.764 335 0.487 C
PGS_21326110-_25807618+ (17066 16939,16683 16583,16477 16452,15876 15865,15706 15680,15646 15628,15222 15201)
Alignment (genomic DNA sequence = upper lines):
ACATCAAATA TTACGACACA TGCATGAAGC ATTAAATATA TACAAAAATA AAAACTAATT 17007
||||||||| || | ||| | ||| ||| ||||||||| || || | ||||| ||||
ACATCAAATG TTTGAATACA TATATGGAGC ATTAAATATG GAC--GAA-A AAAACCAATT 120
GCACAGTTTA CCTATAAATC GCGAGATAAA TCTTTTAAAC CTAGTTAC-T CTATGATTAG 16948
|||||||| | | ||||| |||||| || |||||| | | ||| |||| | || ||||| |
ACACAGTTTG CATGTAAATT GCGAGACGAA TCTTTTGAGC CTAATTACGT CT-TGATTTG 179
ACAATATTTG TCAAATAAAA ACGAAAGTGC TACAGTCTCA AAAACCAAAA AGTTTTCGAA 16888
||||| |
ACAATGTGG. .......... .......... .......... .......... .......... 188
ACTAAACAAG GCCTGACACT TGCACATCTT TTTTAAAAAA TATAAGGCCC TGTTTAGTTC 16828
.......... .......... .......... .......... .......... .......... 188
CCACCTAAAA AATTTTCATC CATCACATTG AATCTTTAGA CACATACATA AAACATTAAA 16768
.......... .......... .......... .......... .......... .......... 188
TGTAGATAAA AAATAATTAC ACAGTTTGGT TGAAAATCGC GAGATGAATT TTTTAAGCCT 16708
.......... .......... .......... .......... .......... .......... 188
AGTTAGTCCA TGATTAGCCT TAAGTGCTAC AGTAACCCAC ATGTGCTAAT AATAGATTAA 16648
||||| ||||| || || ||||||| | |||||
.......... .......... ....GGCTAC AGTAA---AC ATTTGCTAAT GACGAATTAA 221
TTATACTTAA TAGATTCGTC TTGCAGTTTC CTGACGAGTT ATGTAATTTG TTTTTTTTAT 16588
||| ||||| |||||||||| | ||||||| | | ||| | |||||| || |||| ||||
TTAGGCTTAA TAGATTCGTC TCGCAGTTTA CAGGCGAAAT CTGTAATCTG -TTTTGTTAT 280
TAGTTTTTAA AAACCCCTCC CGACATCCTT CCGACATATC CGATGTGACC TAAAAAATTT 16528
||||
TAGTC..... .......... .......... .......... .......... .......... 285
TCATCTTCAA TCTAAACATG CCCTAAGTGA AATGCAATAA TGTGTTGTAG AACTTTTATA 16468
|| |||| |
.......... .......... .......... .......... .......... TACGTTTA-A 294
GGCTATCACA CATGTGGTAG GGCGAGACCA TCATTACATT CGAAGAAGAA ATATATTCCG 16408
|| ||| | |||||
TACT-TCA-A -ATGTG.... .......... .......... .......... .......... 307
CAATCCACAA TTGGGATAAA ATAGCAAATC ATCGAAAAGG GCCTGACCAA TAAGAATCAG 16348
.......... .......... .......... .......... .......... .......... 307
GTCAAGGGTT CATACAACTG TCATCAGCTA TGCAGAGCCA AAAAAAAAAC ATATCATTGG 16288
.......... .......... .......... .......... .......... .......... 307
GGTTTGCTAT TAGATCAATC AATTGCTTAT GCAGTTTCCA ATAAAAAAAA TGCTTATGCA 16228
.......... .......... .......... .......... .......... .......... 307
AATTTCTCCC ATATACAACT AAAGTTACAT GAGCACATTC CTCCTGAAAC GTAATACTGA 16168
.......... .......... .......... .......... .......... .......... 307
AAGCATACTT TTGATTTGAA TGGTTGAATC TACAAGCTAT ACGGTTTGTT TCCAGAATCT 16108
.......... .......... .......... .......... .......... .......... 307
GATCGATCTA TCATTTCCAC AAATAACAAA AACTGGTTCA ACTGGGGAGT GGTCGAGCCA 16048
.......... .......... .......... .......... .......... .......... 307
TCTGGGAGCA CCAGTGCTGC CAGAGGGCAA TCTTGCAACC TTTTCTGCAG TAAGTGCATC 15988
.......... .......... .......... .......... .......... .......... 307
CCAGACGACA ACCTGAAGAG TGACGTATCA TAGTTAAGCT TGCTGAAATA CAAATATATA 15928
.......... .......... .......... .......... .......... .......... 307
TACTGTTCTC AATTTGGAAT TTACCTCATT GTTTTGTTCA TCAACTGATA GAACAAATTC 15868
| || |
.......... .......... .......... .......... .......... .TCCGTATAC 316
TTCGGTTTCA TTGAAGACAG CCTGGATAGT AAGAACAGTT ATTATCATAT TTATTGTCTA 15808
|||
TTC....... .......... .......... .......... .......... .......... 319
TCATAGCAAG GTTAGGTATG TTGTTATCCT AAGCTGCAAG CTCAAACCAG CCTATTTTCA 15748
.......... .......... .......... .......... .......... .......... 319
AATTAAAGAA TTGCAATATT TTGTTTCCTA AAATTTTGGG TAAAAATAAT ATATATGGCA 15688
|||||| | || | |||||
.......... .......... .......... .......... .AAAAATTTT AT-TTTGGCA 337
CACGAGTAAA TTTAAATCAG GAAAAAATAA TAATCTTATA GAAACACAGA GAAACTAACC 15628
||||| |||||||| ||||| | |
CACGAACT.. .......... .......... .......... .AAACACAGC CAAACTCAAC 364
TGACAACGAA ATTGTCTGCG AATGGCTCCT GCATATTGCT TCACAAGTCG TCCAGTGCCA 15568
.......... .......... .......... .......... .......... .......... 364
ACTTCCCATA ACTTGACACA AGAATCTTTC CCACAAGATA GGACATACCT GAAAGAACGT 15508
.......... .......... .......... .......... .......... .......... 364
AGTAAACTTC ATAACAGATA ACCAGAATAC AGTGTGCAGT TTTATGAAAG AAATCCATGA 15448
.......... .......... .......... .......... .......... .......... 364
ACTATCTAAG CATATACTTC GGGTAGTCAA AGTTCACTAC ATCAATTTTT TAGATCAATC 15388
.......... .......... .......... .......... .......... .......... 364
TTATATGCAA GTGCATTCAC GCTGCATATA ACCACATAAA CACTAGGCCT TTCAGAAGAA 15328
.......... .......... .......... .......... .......... .......... 364
GTCTAAAAAG TGTTTATAGG CAAGTTAGTT GTTTAGTGGT GAAATAGTAG GGTAAAGGAG 15268
.......... .......... .......... .......... .......... .......... 364
AAAGAGTTAT TCGTGTTATA AAGTTACGAC ACGTCTGAAA CACAGGAAAT TATCCAGGAC 15208
|||| ||| ||| |
.......... .......... .......... .......... .....AAAAT TATTCAGCA- 378
ATGTTAT 15201
|||||||
ATGTTAT 385
********************************************************************************
EST sequence 138 -strand (File: 24287802-)
1 AAAGACGAGA GGTACATCCT ATCCAGTGGG AAGGATTCGT GTATAAAGTT ATGGGAAGTT
61 GGCACCGGAA GACTTGTGAA GCAATATCCA GGTGTTGTTA ATACACAATT CCGGTGTCAG
121 GCTGTCTTCA ACGAAACCGA GGAGTTTGTA CTATCAACCG ACGAGCAAAA CAACGAGGTT
181 GTCGTCTGGG ACGCCCTTAC TTCTGAAAGG GTGGCAAGAT TGCCGTCTGG CCACACCGGC
241 GCCCCTAGGT GGCTGGAGCA CTCCCCTGTA GAGCCAGTGT TTGTTACATG CGGAAACGAT
301 CGATCCGTCA GATTCTGGAA ATAAACGGTG TAGATTCAAT TCAACCCTGG CATTTAAATC
361 ATGAAGTTTG TTGTATCATG AGTACTTCAG GGTAAAAGAA AGGAATACTT GTAATTGTAG
421 TGGCTGTACT TATACATGCT GTTGATAC
Predicted gene structure (within gDNA segment 15024 to 17054):
Exon 1 15024 15034 ( 11 n); cDNA 1 11 ( 11 n); score: 0.818
Intron 1 15035 15519 ( 485 n); Pd: 0.794 (s: 0), Pa: 0.933 (s: 0.84)
Exon 2 15520 15628 ( 109 n); cDNA 12 120 ( 109 n); score: 0.807
Intron 2 15629 15846 ( 218 n); Pd: 1.000 (s: 0.78), Pa: 0.995 (s: 0.82)
Exon 3 15847 15903 ( 57 n); cDNA 121 177 ( 57 n); score: 0.825
Intron 3 15904 15975 ( 72 n); Pd: 0.991 (s: 0.80), Pa: 0.993 (s: 0.86)
Exon 4 15976 16159 ( 184 n); cDNA 178 359 ( 182 n); score: 0.777
MATCH 21326110+ 24287802- 0.794 361 0.806 C
PGS_21326110+_24287802- (15024 15034,15520 15628,15847 15903,15976 16159)
Alignment (genomic DNA sequence = upper lines):
AGAGATGAGA GGTAAGCGAG CTACCAGCAT GTCTAAGGTG CTCTTCCCTC AAGATAAAAT 15083
| ||| |||| |
AAAGACGAGA G......... .......... .......... .......... .......... 11
CCAGTCATTG TTTGGTTTGA AGAACAGAGA GAAAGGCATA TGCTGTATGA TTCAAGACAG 15143
.......... .......... .......... .......... .......... .......... 11
TAACTACTTC AAACCCTGTT TGGAATGTGG GAATCTTGTA GTGATTCTGA ATGATTTATA 15203
.......... .......... .......... .......... .......... .......... 11
ACATGTCCTG GATAATTTCC TGTGTTTCAG ACGTGTCGTA ACTTTATAAC ACGAATAACT 15263
.......... .......... .......... .......... .......... .......... 11
CTTTCTCCTT TACCCTACTA TTTCACCACT AAACAACTAA CTTGCCTATA AACACTTTTT 15323
.......... .......... .......... .......... .......... .......... 11
AGACTTCTTC TGAAAGGCCT AGTGTTTATG TGGTTATATG CAGCGTGAAT GCACTTGCAT 15383
.......... .......... .......... .......... .......... .......... 11
ATAAGATTGA TCTAAAAAAT TGATGTAGTG AACTTTGACT ACCCGAAGTA TATGCTTAGA 15443
.......... .......... .......... .......... .......... .......... 11
TAGTTCATGG ATTTCTTTCA TAAAACTGCA CACTGTATTC TGGTTATCTG TTATGAAGTT 15503
.......... .......... .......... .......... .......... .......... 11
TACTACGTTC TTTCAGGTAT GTCCTATCTT GTGGGAAAGA TTCTTGTGTC AAGTTATGGG 15563
||| ||||||| ||||||| || ||| ||| | ||||||||||
.......... ......GTAC ATCCTATCCA GTGGGAAGGA TTCGTGTATA AAGTTATGGG 55
AAGTTGGCAC TGGACGACTT GTGAAGCAAT ATGCAGGAGC CATTCGCAGA CAATTTCGTT 15623
|||||||||| ||| ||||| |||||||||| || |||| | || | | ||||| || |
AAGTTGGCAC CGGAAGACTT GTGAAGCAAT ATCCAGGTGT TGTTAATACA CAATTCCGGT 115
GTCAGGTTAG TTTCTCTGTG TTTCTATAAG ATTATTATTT TTTCCTGATT TAAATTTACT 15683
|||||
GTCAG..... .......... .......... .......... .......... .......... 120
CGTGTGCCAT ATATATTATT TTTACCCAAA ATTTTAGGAA ACAAAATATT GCAATTCTTT 15743
.......... .......... .......... .......... .......... .......... 120
AATTTGAAAA TAGGCTGGTT TGAGCTTGCA GCTTAGGATA ACAACATACC TAACCTTGCT 15803
.......... .......... .......... .......... .......... .......... 120
ATGATAGACA ATAAATATGA TAATAACTGT TCTTACTATC CAGGCTGTCT TCAATGAAAC 15863
||||||| |||| |||||
.......... .......... .......... .......... ...GCTGTCT TCAACGAAAC 137
CGAAGAATTT GTTCTATCAG TTGATGAACA AAACAATGAG GTAAATTCCA AATTGAGAAC 15923
||| || ||| || |||||| || || || |||||| |||
CGAGGAGTTT GTACTATCAA CCGACGAGCA AAACAACGAG .......... .......... 177
AGTATATATA TTTGTATTTC AGCAAGCTTA ACTATGATAC GTCACTCTTC AGGTTGTCGT 15983
||||||||
.......... .......... .......... .......... .......... ..GTTGTCGT 185
CTGGGATGCA CTTACTGCAG AAAAGGTTGC AAGATTGCCC TCTGGCAGCA CTGGTGCTCC 16043
|||||| || |||||| | | ||| ||| || ||||||||| |||||| || | || || ||
CTGGGACGCC CTTACTTCTG AAAGGGTGGC AAGATTGCCG TCTGGCCACA CCGGCGCCCC 245
CAGATGGCTC GACCACTCCC CAGTTGAACC AGTTTTTGTT ATTTGTGGAA ATGATAGATC 16103
|| ||||| || ||||||| | || || || ||| |||||| | || |||| | ||| ||||
TAGGTGGCTG GAGCACTCCC CTGTAGAGCC AGTGTTTGTT ACATGCGGAA ACGATCGATC 305
GATCAGATTC TGGAAACAAA CCGTATAGCT TGTAGATTCA ACCATTCAAA TCAAAA 16159
|||||||| |||||| ||| | || ||| | | | ||||| ||| | | | |||
CGTCAGATTC TGGAAATAAA CGGTGTAGAT T-CA-ATTCA ACCCTGGCAT TTAAAT 359
********************************************************************************
EST sequence 137 -strand (File: 24293407-)
1 AAGACGAGAG GTACATCCTA TCCAGTGGGA AGGATTCGTG TATAAAGTTA TGGGAAGTTG
61 GCACCGGAAG ACTTGTGAAG CAATATCCAG GTGTTGTTAA TACACAATTC CGGTGTCAGG
121 CTGTCTTCAA CGAAACCGAG GAGTTTGTAC TATCAACCGA CGAGCAAAAC AACGAGGTTG
181 TCGTCTGGGA CGCCCTTACT TCTGAAAGGG TGGCAAGATT GCCGTCTGGC CACACCGGCG
241 CCCCTAGGTG GCTGGAGCAC TCCCCTGTAG AGCCAGTGTT TGTTACATGC GGAAACGATC
301 GATCCGTCAG ATTCTGGAAA TAAACGGTGT AGATTCAATT CAACCCTGGC ATTTAAATCA
361 TGAAGTTTGT TGTATCATGA GTACTTCAGG GTAAAAGAAA GGAATACTTG TAATTGTAGT
421 GGCTGTACTT ATACATGCTG TTGATAC
Predicted gene structure (within gDNA segment 15029 to 17054):
Exon 1 15029 15034 ( 6 n); cDNA 5 10 ( 6 n); score: 0.833
Intron 1 15035 15519 ( 485 n); Pd: 0.794 (s: 0), Pa: 0.933 (s: 0.84)
Exon 2 15520 15628 ( 109 n); cDNA 11 119 ( 109 n); score: 0.807
Intron 2 15629 15846 ( 218 n); Pd: 1.000 (s: 0.78), Pa: 0.995 (s: 0.82)
Exon 3 15847 15903 ( 57 n); cDNA 120 176 ( 57 n); score: 0.825
Intron 3 15904 15975 ( 72 n); Pd: 0.991 (s: 0.80), Pa: 0.993 (s: 0.86)
Exon 4 15976 16159 ( 184 n); cDNA 177 358 ( 182 n); score: 0.777
MATCH 21326110+ 24293407- 0.794 356 0.796 C
PGS_21326110+_24293407- (15029 15034,15520 15628,15847 15903,15976 16159)
Alignment (genomic DNA sequence = upper lines):
TGAGAGGTAA GCGAGCTACC AGCATGTCTA AGGTGCTCTT CCCTCAAGAT AAAATCCAGT 15088
|||||
CGAGAG.... .......... .......... .......... .......... .......... 10
CATTGTTTGG TTTGAAGAAC AGAGAGAAAG GCATATGCTG TATGATTCAA GACAGTAACT 15148
.......... .......... .......... .......... .......... .......... 10
ACTTCAAACC CTGTTTGGAA TGTGGGAATC TTGTAGTGAT TCTGAATGAT TTATAACATG 15208
.......... .......... .......... .......... .......... .......... 10
TCCTGGATAA TTTCCTGTGT TTCAGACGTG TCGTAACTTT ATAACACGAA TAACTCTTTC 15268
.......... .......... .......... .......... .......... .......... 10
TCCTTTACCC TACTATTTCA CCACTAAACA ACTAACTTGC CTATAAACAC TTTTTAGACT 15328
.......... .......... .......... .......... .......... .......... 10
TCTTCTGAAA GGCCTAGTGT TTATGTGGTT ATATGCAGCG TGAATGCACT TGCATATAAG 15388
.......... .......... .......... .......... .......... .......... 10
ATTGATCTAA AAAATTGATG TAGTGAACTT TGACTACCCG AAGTATATGC TTAGATAGTT 15448
.......... .......... .......... .......... .......... .......... 10
CATGGATTTC TTTCATAAAA CTGCACACTG TATTCTGGTT ATCTGTTATG AAGTTTACTA 15508
.......... .......... .......... .......... .......... .......... 10
CGTTCTTTCA GGTATGTCCT ATCTTGTGGG AAAGATTCTT GTGTCAAGTT ATGGGAAGTT 15568
||| |||| ||| ||||| || ||||| | || | ||||| ||||||||||
.......... .GTACATCCT ATCCAGTGGG AAGGATTCGT GTATAAAGTT ATGGGAAGTT 59
GGCACTGGAC GACTTGTGAA GCAATATGCA GGAGCCATTC GCAGACAATT TCGTTGTCAG 15628
||||| ||| |||||||||| ||||||| || || | || | |||||| || ||||||
GGCACCGGAA GACTTGTGAA GCAATATCCA GGTGTTGTTA ATACACAATT CCGGTGTCAG 119
GTTAGTTTCT CTGTGTTTCT ATAAGATTAT TATTTTTTCC TGATTTAAAT TTACTCGTGT 15688
.......... .......... .......... .......... .......... .......... 119
GCCATATATA TTATTTTTAC CCAAAATTTT AGGAAACAAA ATATTGCAAT TCTTTAATTT 15748
.......... .......... .......... .......... .......... .......... 119
GAAAATAGGC TGGTTTGAGC TTGCAGCTTA GGATAACAAC ATACCTAACC TTGCTATGAT 15808
.......... .......... .......... .......... .......... .......... 119
AGACAATAAA TATGATAATA ACTGTTCTTA CTATCCAGGC TGTCTTCAAT GAAACCGAAG 15868
|| ||||||||| |||||||| |
.......... .......... .......... ........GC TGTCTTCAAC GAAACCGAGG 141
AATTTGTTCT ATCAGTTGAT GAACAAAACA ATGAGGTAAA TTCCAAATTG AGAACAGTAT 15928
| ||||| || |||| || || ||||||| | |||
AGTTTGTACT ATCAACCGAC GAGCAAAACA ACGAG..... .......... .......... 176
ATATATTTGT ATTTCAGCAA GCTTAACTAT GATACGTCAC TCTTCAGGTT GTCGTCTGGG 15988
||| ||||||||||
.......... .......... .......... .......... .......GTT GTCGTCTGGG 189
ATGCACTTAC TGCAGAAAAG GTTGCAAGAT TGCCCTCTGG CAGCACTGGT GCTCCCAGAT 16048
| || ||||| | | |||| | || ||||||| |||| ||||| | ||| || || || || |
ACGCCCTTAC TTCTGAAAGG GTGGCAAGAT TGCCGTCTGG CCACACCGGC GCCCCTAGGT 249
GGCTCGACCA CTCCCCAGTT GAACCAGTTT TTGTTATTTG TGGAAATGAT AGATCGATCA 16108
|||| || || |||||| || || ||||| | |||||| || ||||| ||| |||| |||
GGCTGGAGCA CTCCCCTGTA GAGCCAGTGT TTGTTACATG CGGAAACGAT CGATCCGTCA 309
GATTCTGGAA ACAAACCGTA TAGCTTGTAG ATTCAACCAT TCAAATCAAA A 16159
|||||||||| | |||| || ||| || | |||||||| | | | |||
GATTCTGGAA ATAAACGGTG TAGATT-CA- ATTCAACCCT GGCATTTAAA T 358
********************************************************************************
EST sequence 35 +strand (File: 13586921+)
1 GAAAGATTCT TGTGTCAAGT TATGGGAAGT TGGCACTGGA CGACTTGTGA AGCAATATGC
61 AGGAGCCATT CGCAGACAAT TTCGTTGTCA GGCTGTCTTC AATGAAACCG AAGAATTTGT
121 TCTATCAGTT GATGAACAAA ACAATGAGGT TGTCGTCTGG GATGCACTTA CTGCAGAAAA
181 GGTTGCAAGA TTGCCCTCTG GCAGCACTGG TGCTCCCAGA TGGCTCGACC ACTCCCCAGT
241 TGAACCAGTT TTTGTTATTT GTGGAAATGA TAGATCGATC AGATTCTGGA AACAAACCGT
301 ATAGCTTGTA GATTCAACCA TTCAAATCAA AAGTATGCTT TCAGTATTAC GTTTCAGGAG
361 GAATGTGCTC ATGTAACTTT AGTTGTATAT GGGAGAAATT TGCATAAGCA TTTTTTTTAT
421 TGGAAACTGC ATAAGCAATT GATTGATATA ATA
Predicted gene structure (within gDNA segment 15238 to 16609):
Exon 1 15538 15628 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000
Intron 1 15629 15846 ( 218 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00)
Exon 2 15847 15903 ( 57 n); cDNA 92 148 ( 57 n); score: 1.000
Intron 2 15904 15975 ( 72 n); Pd: 0.991 (s: 1.00), Pa: 0.993 (s: 1.00)
Exon 3 15976 16280 ( 305 n); cDNA 149 453 ( 305 n); score: 0.997
MATCH 21326110+ 13586921+ 0.998 453 1.000 C
PGS_21326110+_13586921+ (15538 15628,15847 15903,15976 16280)
Alignment (genomic DNA sequence = upper lines):
GAAAGATTCT TGTGTCAAGT TATGGGAAGT TGGCACTGGA CGACTTGTGA AGCAATATGC 15597
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAAAGATTCT TGTGTCAAGT TATGGGAAGT TGGCACTGGA CGACTTGTGA AGCAATATGC 60
AGGAGCCATT CGCAGACAAT TTCGTTGTCA GGTTAGTTTC TCTGTGTTTC TATAAGATTA 15657
|||||||||| |||||||||| |||||||||| |
AGGAGCCATT CGCAGACAAT TTCGTTGTCA G......... .......... .......... 91
TTATTTTTTC CTGATTTAAA TTTACTCGTG TGCCATATAT ATTATTTTTA CCCAAAATTT 15717
.......... .......... .......... .......... .......... .......... 91
TAGGAAACAA AATATTGCAA TTCTTTAATT TGAAAATAGG CTGGTTTGAG CTTGCAGCTT 15777
.......... .......... .......... .......... .......... .......... 91
AGGATAACAA CATACCTAAC CTTGCTATGA TAGACAATAA ATATGATAAT AACTGTTCTT 15837
.......... .......... .......... .......... .......... .......... 91
ACTATCCAGG CTGTCTTCAA TGAAACCGAA GAATTTGTTC TATCAGTTGA TGAACAAAAC 15897
| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.........G CTGTCTTCAA TGAAACCGAA GAATTTGTTC TATCAGTTGA TGAACAAAAC 142
AATGAGGTAA ATTCCAAATT GAGAACAGTA TATATATTTG TATTTCAGCA AGCTTAACTA 15957
||||||
AATGAG.... .......... .......... .......... .......... .......... 148
TGATACGTCA CTCTTCAGGT TGTCGTCTGG GATGCACTTA CTGCAGAAAA GGTTGCAAGA 16017
|| |||||||||| |||||||||| |||||||||| ||||||||||
.......... ........GT TGTCGTCTGG GATGCACTTA CTGCAGAAAA GGTTGCAAGA 190
TTGCCCTCTG GCAGCACTGG TGCTCCCAGA TGGCTCGACC ACTCCCCAGT TGAACCAGTT 16077
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTGCCCTCTG GCAGCACTGG TGCTCCCAGA TGGCTCGACC ACTCCCCAGT TGAACCAGTT 250
TTTGTTATTT GTGGAAATGA TAGATCGATC AGATTCTGGA AACAAACCGT ATAGCTTGTA 16137
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTGTTATTT GTGGAAATGA TAGATCGATC AGATTCTGGA AACAAACCGT ATAGCTTGTA 310
GATTCAACCA TTCAAATCAA AAGTATGCTT TCAGTATTAC GTTTCAGGAG GAATGTGCTC 16197
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATTCAACCA TTCAAATCAA AAGTATGCTT TCAGTATTAC GTTTCAGGAG GAATGTGCTC 370
ATGTAACTTT AGTTGTATAT GGGAGAAATT TGCATAAGCA TTTTTTTTAT TGGAAACTGC 16257
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATGTAACTTT AGTTGTATAT GGGAGAAATT TGCATAAGCA TTTTTTTTAT TGGAAACTGC 430
ATAAGCAATT GATTGATCTA ATA 16280
|||||||||| ||||||| || |||
ATAAGCAATT GATTGATATA ATA 453
********************************************************************************
EST sequence 101 -strand (File: 5688746-)
1 GGGAGCAATT CGCAGACAAT TTCGTTGTCA GGCTGTCTTC AATGAAACCG AGGAATTTGT
61 GCTATCAGTT GATGAACAAA ACAATGAGGT TGTCGTCTGG GATGCACTTA CTGCTGAAAA
121 GGTTACAAGA TTGCCTTCTG GCAGCACTGG TGCTCCTAGA TGGCTCGACC ATTCCCCAGT
181 TGAGCCAGTT TTTGTTAGTT GTGGAAACGA TAGATCGATC AAATTCTGGA AACAAACCGT
241 ATAAGCTTGT AGATTCAACC ACGCAAATCA AAAGAGTATG TTTTCAGTAT TACTGTTTCA
301 GGAGGAATGT GCTAGTGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCGATTTTT
361 TTTTGAAACT GCATAAGCAA TTGTTTGACC TAATAGCAAA TCCCAA
Predicted gene structure (within gDNA segment 15265 to 16683):
Exon 1 15598 15628 ( 31 n); cDNA 1 31 ( 31 n); score: 0.935
Intron 1 15629 15846 ( 218 n); Pd: 1.000 (s: 0), Pa: 0.995 (s: 0.96)
Exon 2 15847 15903 ( 57 n); cDNA 32 88 ( 57 n); score: 0.965
Intron 2 15904 15975 ( 72 n); Pd: 0.991 (s: 0.96), Pa: 0.993 (s: 0.94)
Exon 3 15976 16291 ( 316 n); cDNA 89 406 ( 318 n); score: 0.908
MATCH 21326110+ 5688746- 0.917 404 0.995 C
PGS_21326110+_5688746- (15598 15628,15847 15903,15976 16291)
Alignment (genomic DNA sequence = upper lines):
AGGAGCCATT CGCAGACAAT TTCGTTGTCA GGTTAGTTTC TCTGTGTTTC TATAAGATTA 15657
||||| ||| |||||||||| |||||||||| |
GGGAGCAATT CGCAGACAAT TTCGTTGTCA G......... .......... .......... 31
TTATTTTTTC CTGATTTAAA TTTACTCGTG TGCCATATAT ATTATTTTTA CCCAAAATTT 15717
.......... .......... .......... .......... .......... .......... 31
TAGGAAACAA AATATTGCAA TTCTTTAATT TGAAAATAGG CTGGTTTGAG CTTGCAGCTT 15777
.......... .......... .......... .......... .......... .......... 31
AGGATAACAA CATACCTAAC CTTGCTATGA TAGACAATAA ATATGATAAT AACTGTTCTT 15837
.......... .......... .......... .......... .......... .......... 31
ACTATCCAGG CTGTCTTCAA TGAAACCGAA GAATTTGTTC TATCAGTTGA TGAACAAAAC 15897
| |||||||||| ||||||||| |||||||| | |||||||||| ||||||||||
.........G CTGTCTTCAA TGAAACCGAG GAATTTGTGC TATCAGTTGA TGAACAAAAC 82
AATGAGGTAA ATTCCAAATT GAGAACAGTA TATATATTTG TATTTCAGCA AGCTTAACTA 15957
||||||
AATGAG.... .......... .......... .......... .......... .......... 88
TGATACGTCA CTCTTCAGGT TGTCGTCTGG GATGCACTTA CTGCAGAAAA GGTTGCAAGA 16017
|| |||||||||| |||||||||| |||| ||||| |||| |||||
.......... ........GT TGTCGTCTGG GATGCACTTA CTGCTGAAAA GGTTACAAGA 130
TTGCCCTCTG GCAGCACTGG TGCTCCCAGA TGGCTCGACC ACTCCCCAGT TGAACCAGTT 16077
||||| |||| |||||||||| |||||| ||| |||||||||| | |||||||| ||| ||||||
TTGCCTTCTG GCAGCACTGG TGCTCCTAGA TGGCTCGACC ATTCCCCAGT TGAGCCAGTT 190
TTTGTTATTT GTGGAAATGA TAGATCGATC AGATTCTGGA AACAAACCGT AT-AGCTTGT 16136
||||||| || ||||||| || |||||||||| | |||||||| |||||||||| || |||||||
TTTGTTAGTT GTGGAAACGA TAGATCGATC AAATTCTGGA AACAAACCGT ATAAGCTTGT 250
AGATTCAACC ATTCAAATC- AAA-AGTATG CTTTCAGTAT TAC-GTTTCA GGAGGAATGT 16193
|||||||||| | |||||| ||| |||||| ||||||||| ||| |||||| ||||||||||
AGATTCAACC ACGCAAATCA AAAGAGTATG TTTTCAGTAT TACTGTTTCA GGAGGAATGT 310
GCTCATGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCATTTTTT TTATTGGAAA 16253
||| ||||| |||||||||| |||||||||| |||||||||| ||| ||||| || || ||||
GCTAGTGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCGATTTTT TT-TT-GAAA 368
CTGCATAAGC AATTGATTGA TCTAATAGCA AACCCCAA 16291
|||||||||| ||||| |||| ||||||||| || |||||
CTGCATAAGC AATTGTTTGA CCTAATAGCA AATCCCAA 406
********************************************************************************
EST sequence 105 -strand (File: 12973578-)
1 AATTCGCAGA CAATTTCGTT GTCAGGCTGT CTTCAATGAA ACCGAGGAAT TTGTGCTATC
61 AGTTGATGAA CAAAACAATG AGGTTGTCGT CTGGGATGCA CTTACTGCTG AAAAGGTTAC
121 AAGATTGCCT TCTGGCAGCA CTGGTGCTCC TAGATGGCTC GACCATTCCC CAGTTGAGCC
181 AGTTTTTGTT AGTTGTGGAA ACGATAGATC GATCAAATTC TGGAAACAAA CCGTATAAGC
241 TTGTAGATTC AACCACGCAA ATCAAAAAAA AAAATATTCA GTATTACTGT TTCAGGAGGA
301 ATGTGCTAGT GTAACTTNAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTTGAA
361 ACTGCATAAG CAATTGTTTG ACCTAATAGC AAATCCCAAT CAGATGTTTT TTTTGGT
Predicted gene structure (within gDNA segment 15295 to 16773):
Exon 1 15604 15628 ( 25 n); cDNA 1 25 ( 25 n); score: 0.960
Intron 1 15629 15846 ( 218 n); Pd: 1.000 (s: 0), Pa: 0.995 (s: 0.96)
Exon 2 15847 15903 ( 57 n); cDNA 26 82 ( 57 n); score: 0.965
Intron 2 15904 15975 ( 72 n); Pd: 0.991 (s: 0.96), Pa: 0.993 (s: 0.94)
Exon 3 15976 16309 ( 334 n); cDNA 83 417 ( 335 n); score: 0.886
MATCH 21326110+ 12973578- 0.898 416 0.998 C
PGS_21326110+_12973578- (15604 15628,15847 15903,15976 16309)
Alignment (genomic DNA sequence = upper lines):
CATTCGCAGA CAATTTCGTT GTCAGGTTAG TTTCTCTGTG TTTCTATAAG ATTATTATTT 15663
||||||||| |||||||||| |||||
AATTCGCAGA CAATTTCGTT GTCAG..... .......... .......... .......... 25
TTTCCTGATT TAAATTTACT CGTGTGCCAT ATATATTATT TTTACCCAAA ATTTTAGGAA 15723
.......... .......... .......... .......... .......... .......... 25
ACAAAATATT GCAATTCTTT AATTTGAAAA TAGGCTGGTT TGAGCTTGCA GCTTAGGATA 15783
.......... .......... .......... .......... .......... .......... 25
ACAACATACC TAACCTTGCT ATGATAGACA ATAAATATGA TAATAACTGT TCTTACTATC 15843
.......... .......... .......... .......... .......... .......... 25
CAGGCTGTCT TCAATGAAAC CGAAGAATTT GTTCTATCAG TTGATGAACA AAACAATGAG 15903
||||||| |||||||||| ||| |||||| || ||||||| |||||||||| ||||||||||
...GCTGTCT TCAATGAAAC CGAGGAATTT GTGCTATCAG TTGATGAACA AAACAATGAG 82
GTAAATTCCA AATTGAGAAC AGTATATATA TTTGTATTTC AGCAAGCTTA ACTATGATAC 15963
.......... .......... .......... .......... .......... .......... 82
GTCACTCTTC AGGTTGTCGT CTGGGATGCA CTTACTGCAG AAAAGGTTGC AAGATTGCCC 16023
|||||||| |||||||||| |||||||| | |||||||| | |||||||||
.......... ..GTTGTCGT CTGGGATGCA CTTACTGCTG AAAAGGTTAC AAGATTGCCT 130
TCTGGCAGCA CTGGTGCTCC CAGATGGCTC GACCACTCCC CAGTTGAACC AGTTTTTGTT 16083
|||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||||||||||
TCTGGCAGCA CTGGTGCTCC TAGATGGCTC GACCATTCCC CAGTTGAGCC AGTTTTTGTT 190
ATTTGTGGAA ATGATAGATC GATCAGATTC TGGAAACAAA CCGTAT-AGC TTGTAGATTC 16142
| |||||||| | |||||||| ||||| |||| |||||||||| |||||| ||| ||||||||||
AGTTGTGGAA ACGATAGATC GATCAAATTC TGGAAACAAA CCGTATAAGC TTGTAGATTC 250
AACCATTCAA ATC-AAAAGT ATGCT-TTCA GTATTAC-GT TTCAGGAGGA ATGTGCTCAT 16199
||||| ||| ||| |||| | | |||| ||||||| || |||||||||| ||||||| |
AACCACGCAA ATCAAAAAAA AAAATATTCA GTATTACTGT TTCAGGAGGA ATGTGCTAGT 310
GTAACTTTAG TTGTATATGG GAGAAATTTG CATAAGCATT TTTTTTATTG GAAACTGCAT 16259
||||||| || |||||||||| |||||||||| |||||||| | |||||| || ||||||||||
GTAACTTNAG TTGTATATGG GAGAAATTTG CATAAGCA-T TTTTTT-TT- GAAACTGCAT 367
AAGCAATTGA TTGATCTAAT AGCAAACCCC AATGATATGT TTTTTTTTTG 16309
||||||||| |||| ||||| |||||| ||| ||| | |||| |||||||
AAGCAATTGT TTGACCTAAT AGCAAATCCC AATCAGATGT TTTTTTTGGT 417
********************************************************************************
EST sequence 32 -strand (File: 9307163-)
1 GGAACTAAAC AAAACCTTAG TTTCCAGCGA AATCCAAAAA GTTTTCAAGA TTCCCCGTAA
61 CATCGAATCT TGTGGCACAT GCATGAAACA CTAAATATAT TACACAGTTT GTCTATAAAT
121 CATGAGACGA ATCTTTTGAC TTTAGTTAGT TTATGATTGG ACAATATTTA CCACAAGCAA
181 ACGAAAGTGC TACAGTAGCG AAATCCGAAA TTTTTTCGGA TCAAGAGACC AGGACAAGGA
241 GCGATGCGTT CTTGGCTGCG GCGCAAACCA GGCAGGCGTC GACGGGGGCC TCGCACGCGC
301 GGCACAGGCA CAGGTGGCGG CACGGGAGCA GCAGCACGCA CGCCTCGCCG CCGGCGGACG
361 ACCTGCACTC CTCCACCGGC CCCTGTGGTC CGCGGCCGCC GGAGCAGCCT GGCTCGAAGC
421 AGCACGACCG CGCGTCCTCG GTCTCCCCAT GACCCTTGCA AGCGCCGCCA GTCGCCACCG
481 CGCAGGGGGG C
Predicted gene structure (within gDNA segment 17373 to 14904):
Exon 1 17023 16890 ( 134 n); cDNA 87 218 ( 132 n); score: 0.761
Intron 1 16889 16364 ( 526 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0)
Exon 2 16363 16341 ( 23 n); cDNA 219 239 ( 21 n); score: 0.739
MATCH 21326110- 9307163- 0.761 157 0.320 C
PGS_21326110-_9307163- (17023 16890,16363 16341)
Alignment (genomic DNA sequence = upper lines):
AAAAATAAAA ACTAATTGCA CAGTTTACCT ATAAATCGCG AGATAAATCT TTTAAACCTA 16964
|| | |||| | | ||| || |||||| || ||||||| | ||| ||||| ||| | ||
AACACTAAAT A-T-ATTACA CAGTTTGTCT ATAAATCATG AGACGAATCT TTTGACTTTA 144
GTTACTCTAT GATTAGACAA TATTTGTCAA ATAAAAACGA AAGTGCTACA GTCTCAAAAA 16904
|||| | ||| |||| ||||| ||||| || | |||||| |||||||||| || | |||
GTTAGTTTAT GATTGGACAA TATTTACCAC AAGCAAACGA AAGTGCTACA GTAGCGAAAT 204
CCAAAAAGTT TTCGAAACTA AACAAGGCCT GACACTTGCA CATCTTTTTT AAAAAATATA 16844
|| ||| || ||||
CCGAAATTTT TTCG...... .......... .......... .......... .......... 218
AGGCCCTGTT TAGTTCCCAC CTAAAAAATT TTCATCCATC ACATTGAATC TTTAGACACA 16784
.......... .......... .......... .......... .......... .......... 218
TACATAAAAC ATTAAATGTA GATAAAAAAT AATTACACAG TTTGGTTGAA AATCGCGAGA 16724
.......... .......... .......... .......... .......... .......... 218
TGAATTTTTT AAGCCTAGTT AGTCCATGAT TAGCCTTAAG TGCTACAGTA ACCCACATGT 16664
.......... .......... .......... .......... .......... .......... 218
GCTAATAATA GATTAATTAT ACTTAATAGA TTCGTCTTGC AGTTTCCTGA CGAGTTATGT 16604
.......... .......... .......... .......... .......... .......... 218
AATTTGTTTT TTTTATTAGT TTTTAAAAAC CCCTCCCGAC ATCCTTCCGA CATATCCGAT 16544
.......... .......... .......... .......... .......... .......... 218
GTGACCTAAA AAATTTTCAT CTTCAATCTA AACATGCCCT AAGTGAAATG CAATAATGTG 16484
.......... .......... .......... .......... .......... .......... 218
TTGTAGAACT TTTATAGGCT ATCACACATG TGGTAGGGCG AGACCATCAT TACATTCGAA 16424
.......... .......... .......... .......... .......... .......... 218
GAAGAAATAT ATTCCGCAAT CCACAATTGG GATAAAATAG CAAATCATCG AAAAGGGCCT 16364
.......... .......... .......... .......... .......... .......... 218
GACCAATAAG AATCAGGTCA AGG 16341
|| ||| || | |||| || |||
GATCAA-GAG -ACCAGGACA AGG 239
********************************************************************************
EST sequence 128 -strand (File: 7218093-)
1 TTGGCGTGGA CACGTGAGTT GACACCACAG CCTTGGATGT AAACCGAAGT GGTGGCCCAA
61 ATTCCATCCT TTCACTAAAT TTGAGAAAAA TGAAAGATCA AATGCTAACT CAAAACTCAA
121 AGTTGAAAGG ACAAAAACCT GTGTAGCATA GCAATTAGGC AAGTATTTAT CAATGAGGCC
181 TTGTTTAGTT TCAAGACGAA AAGTTTTTGT GTGTCACATC AAATATGTCG GCACATATTT
241 AAAGTACTAA ACATAGACTA ATAAAAAAAC AAATTACATA ACTTGCCTGG AAAGTGTGAG
301 ACGAATTTAT TAAACCTAAT TAATCCGGCA TTAGCACATG TGGGCTACTG TAGCAGCTAT
361 GGCTACTTAT GGGCTAATTA GGCTTAAAAG ATCCATCTCG CGATTTACAA CCAAACTGTG
421 CAATTAGTTT TCGTTTTCGT CTACATTTAA TGCTCCATAC ATATGTCCAA AGATTTGATG
481 TGATGGATAA AAAGTTTTTT TGGGTGAAGA ACTAAACAAG GACTAAGTGA AGCAAATCAT
541 CACCAATCAA GAGAAATAAA CCCTCTTTGA TCGTGCCTCG TGC
Predicted gene structure (within gDNA segment 14999 to 17729):
Exon 1 14999 15034 ( 36 n); cDNA 97 129 ( 33 n); score: 0.583
Intron 1 15035 15779 ( 745 n); Pd: 0.794 (s: 0), Pa: 0.188 (s: 0)
Exon 2 15780 15807 ( 28 n); cDNA 130 157 ( 28 n); score: 0.607
Intron 2 15808 15883 ( 76 n); Pd: 0.000 (s: 0), Pa: 0.361 (s: 0)
Exon 3 15884 15903 ( 20 n); cDNA 158 177 ( 20 n); score: 0.550
Intron 3 15904 16505 ( 602 n); Pd: 0.991 (s: 0), Pa: 0.758 (s: 0.73)
Exon 4 16506 16747 ( 242 n); cDNA 178 419 ( 242 n); score: 0.769
Intron 4 16748 17004 ( 257 n); Pd: 0.780 (s: 0.90), Pa: 0.000 (s: 0.80)
Exon 5 17005 17091 ( 87 n); cDNA 420 500 ( 81 n); score: 0.770
MATCH 21326110+ 7218093- 0.769 413 0.708 C
PGS_21326110+_7218093- (14999 15034,15780 15807,15884 15903,16506 16747,17005 17091)
Alignment (genomic DNA sequence = upper lines):
AGAAGCTACT AGCGCAATTT TCACCAGAGA TGAGAGGTAA GCGAGCTACC AGCATGTCTA 15058
| | | || | | ||| ||| | || ||| ||
ATCAAATGCT AACTCAAAAC TCA--A-AGT TGAAAG.... .......... .......... 129
AGGTGCTCTT CCCTCAAGAT AAAATCCAGT CATTGTTTGG TTTGAAGAAC AGAGAGAAAG 15118
.......... .......... .......... .......... .......... .......... 129
GCATATGCTG TATGATTCAA GACAGTAACT ACTTCAAACC CTGTTTGGAA TGTGGGAATC 15178
.......... .......... .......... .......... .......... .......... 129
TTGTAGTGAT TCTGAATGAT TTATAACATG TCCTGGATAA TTTCCTGTGT TTCAGACGTG 15238
.......... .......... .......... .......... .......... .......... 129
TCGTAACTTT ATAACACGAA TAACTCTTTC TCCTTTACCC TACTATTTCA CCACTAAACA 15298
.......... .......... .......... .......... .......... .......... 129
ACTAACTTGC CTATAAACAC TTTTTAGACT TCTTCTGAAA GGCCTAGTGT TTATGTGGTT 15358
.......... .......... .......... .......... .......... .......... 129
ATATGCAGCG TGAATGCACT TGCATATAAG ATTGATCTAA AAAATTGATG TAGTGAACTT 15418
.......... .......... .......... .......... .......... .......... 129
TGACTACCCG AAGTATATGC TTAGATAGTT CATGGATTTC TTTCATAAAA CTGCACACTG 15478
.......... .......... .......... .......... .......... .......... 129
TATTCTGGTT ATCTGTTATG AAGTTTACTA CGTTCTTTCA GGTATGTCCT ATCTTGTGGG 15538
.......... .......... .......... .......... .......... .......... 129
AAAGATTCTT GTGTCAAGTT ATGGGAAGTT GGCACTGGAC GACTTGTGAA GCAATATGCA 15598
.......... .......... .......... .......... .......... .......... 129
GGAGCCATTC GCAGACAATT TCGTTGTCAG GTTAGTTTCT CTGTGTTTCT ATAAGATTAT 15658
.......... .......... .......... .......... .......... .......... 129
TATTTTTTCC TGATTTAAAT TTACTCGTGT GCCATATATA TTATTTTTAC CCAAAATTTT 15718
.......... .......... .......... .......... .......... .......... 129
AGGAAACAAA ATATTGCAAT TCTTTAATTT GAAAATAGGC TGGTTTGAGC TTGCAGCTTA 15778
.......... .......... .......... .......... .......... .......... 129
GGATAACAAC ATACCTAACC TTGCTATGAT AGACAATAAA TATGATAATA ACTGTTCTTA 15838
|| || ||| | || | | || || |
.GACAAAAAC CTGTGTAGCA TAGCAATTA. .......... .......... .......... 157
CTATCCAGGC TGTCTTCAAT GAAACCGAAG AATTTGTTCT ATCAGTTGAT GAACAAAACA 15898
| | | | ||
.......... .......... .......... .......... .....GGCAA GTATTTATCA 172
ATGAGGTAAA TTCCAAATTG AGAACAGTAT ATATATTTGT ATTTCAGCAA GCTTAACTAT 15958
|||||
ATGAG..... .......... .......... .......... .......... .......... 177
GATACGTCAC TCTTCAGGTT GTCGTCTGGG ATGCACTTAC TGCAGAAAAG GTTGCAAGAT 16018
.......... .......... .......... .......... .......... .......... 177
TGCCCTCTGG CAGCACTGGT GCTCCCAGAT GGCTCGACCA CTCCCCAGTT GAACCAGTTT 16078
.......... .......... .......... .......... .......... .......... 177
TTGTTATTTG TGGAAATGAT AGATCGATCA GATTCTGGAA ACAAACCGTA TAGCTTGTAG 16138
.......... .......... .......... .......... .......... .......... 177
ATTCAACCAT TCAAATCAAA AGTATGCTTT CAGTATTACG TTTCAGGAGG AATGTGCTCA 16198
.......... .......... .......... .......... .......... .......... 177
TGTAACTTTA GTTGTATATG GGAGAAATTT GCATAAGCAT TTTTTTTATT GGAAACTGCA 16258
.......... .......... .......... .......... .......... .......... 177
TAAGCAATTG ATTGATCTAA TAGCAAACCC CAATGATATG TTTTTTTTTT GGCTCTGCAT 16318
.......... .......... .......... .......... .......... .......... 177
AGCTGATGAC AGTTGTATGA ACCCTTGACC TGATTCTTAT TGGTCAGGCC CTTTTCGATG 16378
.......... .......... .......... .......... .......... .......... 177
ATTTGCTATT TTATCCCAAT TGTGGATTGC GGAATATATT TCTTCTTCGA ATGTAATGAT 16438
.......... .......... .......... .......... .......... .......... 177
GGTCTCGCCC TACCACATGT GTGATAGCCT ATAAAAGTTC TACAACACAT TATTGCATTT 16498
.......... .......... .......... .......... .......... .......... 177
CACTTAGGGC ATGTTTAGAT TGAAGATGAA AA-TTTTT-T AGGTCACATC GGATATGTCG 16556
| | ||||||| | | |||| ||| || ||||| | |||||||| ||||||||
.......GCC TTGTTTAGTT TCAAGACGAA AAGTTTTTGT GTGTCACATC AAATATGTCG 230
GAAGGATGTC GGGAGGGGTT TTTAAAAACT AATAAAAAAA ACAAATTACA TAACTCGTCA 16616
| | || | || | | | ||| |||||||||| ||||||||| ||||| | |
GCA-CATATT TAAAGTACTA AACATAGACT AATAAAAAAA -CAAATTACA TAACTTGCCT 288
GGAAACTGCA AGACGAATCT ATTAAGTATA ATTAATCTAT TATTAGCACA TGTGGGTTAC 16676
||||| || |||||||| | ||||| || ||||||| ||||||||| |||||| |||
GGAAAGTGTG AGACGAATTT ATTAAACCTA ATTAATCCGG CATTAGCACA TGTGGGCTAC 348
TGTAGCACTT AAGGCTAATC ATGGACTAAC TAGGCTTAAA AAATTCATCT CGCGATTTTC 16736
||||||| | | ||||| | |||| |||| |||||||||| | || ||||| |||||||| |
TGTAGCAGCT ATGGCTACTT ATGGGCTAAT TAGGCTTAAA AGATCCATCT CGCGATTTAC 408
AACCAAACTG TGTAATTATT TTTTATCTAC ATTTAATGTT TTATGTATGT GTCTAAAGAT 16796
|||||||||| |
AACCAAACTG T......... .......... .......... .......... .......... 419
TCAATGTGAT GGATGAAAAT TTTTTAGGTG GGAACTAAAC AGGGCCTTAT ATTTTTTAAA 16856
.......... .......... .......... .......... .......... .......... 419
AAAGATGTGC AAGTGTCAGG CCTTGTTTAG TTTCGAAAAC TTTTTGGTTT TTGAGACTGT 16916
.......... .......... .......... .......... .......... .......... 419
AGCACTTTCG TTTTTATTTG ACAAATATTG TCTAATCATA GAGTAACTAG GTTTAAAAGA 16976
.......... .......... .......... .......... .......... .......... 419
TTTATCTCGC GATTTATAGG TAAACTGTGC AATTAGTTTT TATTTTTGTA TATATTTAAT 17036
|| |||||||||| |||| || || |||||||
.......... .......... ........GC AATTAGTTTT CGTTTTCGTC TACATTTAAT 451
GCTTCATGCA TGTGTCGTAA TATTTGATGT GTTGAGAAAT TTTGAAAAGT TTTTG 17091
||| ||| || | |||| || ||||||||| | || | | | |||||| ||||
GCTCCATACA TATGTCCAAA GATTTGATGT GATG-G--A- --TAAAAAGT TTTTT 500
********************************************************************************
EST sequence 36 -strand (File: 13586922-)
1 TCTGCCATAT ACAACTAAAG TTACATGAGC ACATTCCTCC TGAAACGTAA TACTGAAAGC
61 ATACTTTTGA TTGGAATGGT TGAATCTACA AGCTATACGG TTAGTTTCCA CAATCTGATC
121 GATCTATCAT TTCCACAAAT AACAAAAACT GGCTCAAC
Predicted gene structure (within gDNA segment 16544 to 15742):
Exon 1 16223 16066 ( 158 n); cDNA 1 158 ( 158 n); score: 0.968
MATCH 21326110- 13586922- 0.968 158 1.000 C
PGS_21326110-_13586922- (16223 16066)
Alignment (genomic DNA sequence = upper lines):
TCTCCCATAT ACAACTAAAG TTACATGAGC ACATTCCTCC TGAAACGTAA TACTGAAAGC 16164
||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTGCCATAT ACAACTAAAG TTACATGAGC ACATTCCTCC TGAAACGTAA TACTGAAAGC 60
ATACTTTTGA TTTGAATGGT TGAATCTACA AGCTATACGG TTTGTTTCCA GAATCTGATC 16104
|||||||||| || ||||||| |||||||||| |||||||||| || ||||||| |||||||||
ATACTTTTGA TTGGAATGGT TGAATCTACA AGCTATACGG TTAGTTTCCA CAATCTGATC 120
GATCTATCAT TTCCACAAAT AACAAAAACT GGTTCAAC 16066
|||||||||| |||||||||| |||||||||| || |||||
GATCTATCAT TTCCACAAAT AACAAAAACT GGCTCAAC 158
********************************************************************************
EST sequence 26 +strand (File: 27548386+)
1 GGACGAGACA AGGGGAAGAG TTGATGGTGT GTAAATTCAG TTCTTCCAGA GGGTGTGTTT
61 AGTTCACGAA AGAAAATTTT TGGATGTCAT ATTGGACGTT TGACCGAATA TCGGAAGTGG
121 TTTTCGGACA CGAATGAAAA AACTAATTTC ATAACTCGCC TGTAAACCGC GAGACGAATT
181 TATTAAGCCT AATTAATCCT TCATTAGTAC ATGTGGATTA CTATAGTACT TATGACTAAT
241 CATGGACTAA NTAGACTTAA AAGATTCNNC TCACAATTTC CATACAAACT GTGCAATTAG
301 TTTTATTTTT ATCTATACTT AATGCTCTTT GCATATGTTC ATATATTCAA TGTGACATTT
361 TAGAAAAAGA AATTGGGGAA CTAAACAAGG CCTGAACTCA GGCAGGTCAG AAATTAATAA
421 CACAAGTACT CCCTCCGTCC TTAAAAAAAC AAATATAAAA CTGAAACATG ATACATCCTA
481 ATACAATGAA ACTGGACATA TGTATGTTTG GAATGTGTTC CATCTAGTAC TAGTTTAGTT
541 TTTTATAGGA CGAAGAGAGT ACAAAACAAG GTGAAGAGGA GTTTGGGTCA TCATTAAATC
601 AAATTAACAC AGGTTCAATG ATGTTTCAGA AGATTGGTTG CAGCTCTTTT ACATTTACAG
661 ACGACTGAGT ACAGGNAGGC TTATNCACTG NGACAGNTCA TTCAGAGAAC AGNCAAAAGG
721 ATTTGGNCTT CCTCGGGGTG NCCGAAATGG CAAAATCCAT TCTGAATTTC CCTGCTCGGG
781 NTTTCAAGGT TCAGCTGCTC CCAAANGTCA AAATTAGGTT TGGTGGGGAC ATTCCCTTGN
841 NTTTTANNCC TGG
Predicted gene structure (within gDNA segment 15216 to 20066):
Exon 1 16539 16747 ( 209 n); cDNA 86 292 ( 207 n); score: 0.766
Intron 1 16748 17004 ( 257 n); Pd: 0.780 (s: 0.80), Pa: 0.000 (s: 0.78)
Exon 2 17005 17066 ( 62 n); cDNA 293 353 ( 61 n); score: 0.774
MATCH 21326110+ 27548386+ 0.768 271 0.318 C
PGS_21326110+_27548386+ (16539 16747,17005 17066)
Alignment (genomic DNA sequence = upper lines):
GTCACATCGG ATATGTCGGA AGGATGTCGG GAGGGGTTTT TAAAAACTAA TAAAAAAAAC 16598
|||| || || | | | | | || |||| || |||||| | || || | ||||| ||
GTCATATTGG ACGT-TTGAC CGAATATCGG AAGTGGTTTT CGGACACGAA TGAAAAA-AC 143
AAATTACATA ACTCGTCAGG AAACTGCAAG ACGAATCTAT TAAGTATAAT TAATCTATTA 16658
|||| |||| ||||| | | |||| || || |||||| ||| |||| |||| ||||| | |
TAATTTCATA ACTCGCCTGT AAACCGCGAG ACGAATTTAT TAAGCCTAAT TAATCCTTCA 203
TTAGCACATG TGGGTTACTG TAGCACTTAA GGCTAATCAT GGACTAACTA GGCTTAAAAA 16718
|||| ||||| ||| ||||| ||| ||||| | |||||||| ||||||| || | |||||||
TTAGTACATG TGGATTACTA TAGTACTTAT GACTAATCAT GGACTAANTA GACTTAAAAG 263
ATTCATCTCG CGATTTTCAA CCAAACTGTG TAATTATTTT TTATCTACAT TTAATGTTTT 16778
|||| ||| | |||| || ||||||||
ATTCNNCTCA CAATTTCCAT ACAAACTGT. .......... .......... .......... 292
ATGTATGTGT CTAAAGATTC AATGTGATGG ATGAAAATTT TTTAGGTGGG AACTAAACAG 16838
.......... .......... .......... .......... .......... .......... 292
GGCCTTATAT TTTTTAAAAA AGATGTGCAA GTGTCAGGCC TTGTTTAGTT TCGAAAACTT 16898
.......... .......... .......... .......... .......... .......... 292
TTTGGTTTTT GAGACTGTAG CACTTTCGTT TTTATTTGAC AAATATTGTC TAATCATAGA 16958
.......... .......... .......... .......... .......... .......... 292
GTAACTAGGT TTAAAAGATT TATCTCGCGA TTTATAGGTA AACTGTGCAA TTAGTTTTTA 17018
|||| |||| |||||
.......... .......... .......... .......... ......GCAA TTAG-TTTTA 305
TTTTTGTATA TATTTAATGC TTCATGCATG TGTCGTAATA TTTGATGT 17066
||||| | || || ||||||| | ||||| ||| ||| || ||||
TTTTTATCTA TACTTAATGC TCTTTGCATA TGTTCATATA TTCAATGT 353
********************************************************************************
EST sequence 132 +strand (File: 18065753+)
1 GCACGAGGGA TTAGTTCACC CCGAAATCCG AAAAGTTTTC AAGATTCCCC GTCAAATCGA
61 ATCTTGCGGC ATATGCATGA AACACTAAAT ATAGAGGAAA ACAAAAACTA ATTACACAGA
121 TTGTCTGTAA ATCGCGAGAT GAATCTTTTG ATTCTAGTTA GTTCATGATT GAACAATATT
181 TGTCAAATAA AAACGAAAAT GCTACAGTAG CGAAATCGAA ATTTTTTCGG AACTAAACAA
241 GGCCTAAACA GGTCCTAAAT ATAATGTTCA GACAATCCCC TTAGTAAATA ATTATCTGAA
301 AAAATATAGT TACTTATTTG TCATAGAATG TCCACTCTTC TGTTTTCTAC ATGAGGATTT
361 GACAGATCTA AAATAGCTGC TAGGCAGCTT GTAGAACTTG TTTGTGATGA AGAGAACCCT
421 TCAATTTGTT ATTGCGTACT TACAGGAGTG CTGCTGCACA ACCAACGTTG CTTATTCCGG
481 TGGTACTTGT GATGATGTAT AACAGATGGA ATGGGATATT AGTTCCGGAT TATGGTTTCA
541 TGCAACTGCA GTTAATACCA ATGCTTGTTG GGTTTTT
Predicted gene structure (within gDNA segment 17927 to 14909):
Exon 1 17104 16878 ( 227 n); cDNA 16 241 ( 226 n); score: 0.802
Intron 1 16877 16585 ( 293 n); Pd: 0.000 (s: 0.80), Pa: 0.795 (s: 0.51)
Exon 2 16584 16544 ( 41 n); cDNA 242 281 ( 40 n); score: 0.512
Intron 2 16543 15668 ( 876 n); Pd: 0.886 (s: 0.51), Pa: 0.477 (s: 0.64)
Exon 3 15667 15618 ( 50 n); cDNA 282 328 ( 47 n); score: 0.640
MATCH 21326110- 18065753+ 0.773 318 0.551 C
PGS_21326110-_18065753+ (17104 16878,16584 16544,15667 15618)
Alignment (genomic DNA sequence = upper lines):
TCACCCCAAA AACCAAAAAC TTTTCAAAAT TTCTCAACAC ATCAAATATT ACGACACATG 17045
||||||| || | || |||| ||||||| || | | | || ||| ||| || || || |||
TCACCCCGAA ATCCGAAAAG TTTTCAAGAT TCCCCGTCAA ATCGAATCTT GCGGCATATG 75
CATGAAGCAT TAAATATATA CAAAAATAAA AACTAATTGC ACAGTTTACC TATAAATCGC 16985
|||||| || |||||||| | |||| ||| |||||||| | |||| || | | ||||||||
CATGAAACAC TAAATATAGA GGAAAACAAA AACTAATTAC ACAGATTGTC TGTAAATCGC 135
GAGATAAATC TTTTAAACCT AGTTACTCTA TGATTAGACA ATATTTGTCA AATAAAAACG 16925
||||| |||| |||| | || ||||| | | ||||| ||| |||||||||| ||||||||||
GAGATGAATC TTTTGATTCT AGTTAGTTCA TGATTGAACA ATATTTGTCA AATAAAAACG 195
AAAGTGCTAC AGTCTCAAAA ACCAAAAAGT TTTCGAAACT AAACAAGGCC TGACACTTGC 16865
||| |||||| ||| | || | | ||| | ||||| |||| |||||||
AAAATGCTAC AGTAGC-GAA ATCGAAATTT TTTCGGAACT AAACAAG... .......... 241
ACATCTTTTT TAAAAAATAT AAGGCCCTGT TTAGTTCCCA CCTAAAAAAT TTTCATCCAT 16805
.......... .......... .......... .......... .......... .......... 241
CACATTGAAT CTTTAGACAC ATACATAAAA CATTAAATGT AGATAAAAAA TAATTACACA 16745
.......... .......... .......... .......... .......... .......... 241
GTTTGGTTGA AAATCGCGAG ATGAATTTTT TAAGCCTAGT TAGTCCATGA TTAGCCTTAA 16685
.......... .......... .......... .......... .......... .......... 241
GTGCTACAGT AACCCACATG TGCTAATAAT AGATTAATTA TACTTAATAG ATTCGTCTTG 16625
.......... .......... .......... .......... .......... .......... 241
CAGTTTCCTG ACGAGTTATG TAATTTGTTT TTTTTATTAG TTTTTAAAAA CCCCTCCCGA 16565
| || | ||| |
.......... .......... .......... .......... GCCTAAACAG GTCCTAAATA 261
CATCCTTCCG ACATATCCGA TGTGACCTAA AAAATTTTCA TCTTCAATCT AAACATGCCC 16505
| ||| | ||| |||| |
TAATGTTCAG ACA-ATCCCC T......... .......... .......... .......... 281
TAAGTGAAAT GCAATAATGT GTTGTAGAAC TTTTATAGGC TATCACACAT GTGGTAGGGC 16445
.......... .......... .......... .......... .......... .......... 281
GAGACCATCA TTACATTCGA AGAAGAAATA TATTCCGCAA TCCACAATTG GGATAAAATA 16385
.......... .......... .......... .......... .......... .......... 281
GCAAATCATC GAAAAGGGCC TGACCAATAA GAATCAGGTC AAGGGTTCAT ACAACTGTCA 16325
.......... .......... .......... .......... .......... .......... 281
TCAGCTATGC AGAGCCAAAA AAAAAACATA TCATTGGGGT TTGCTATTAG ATCAATCAAT 16265
.......... .......... .......... .......... .......... .......... 281
TGCTTATGCA GTTTCCAATA AAAAAAATGC TTATGCAAAT TTCTCCCATA TACAACTAAA 16205
.......... .......... .......... .......... .......... .......... 281
GTTACATGAG CACATTCCTC CTGAAACGTA ATACTGAAAG CATACTTTTG ATTTGAATGG 16145
.......... .......... .......... .......... .......... .......... 281
TTGAATCTAC AAGCTATACG GTTTGTTTCC AGAATCTGAT CGATCTATCA TTTCCACAAA 16085
.......... .......... .......... .......... .......... .......... 281
TAACAAAAAC TGGTTCAACT GGGGAGTGGT CGAGCCATCT GGGAGCACCA GTGCTGCCAG 16025
.......... .......... .......... .......... .......... .......... 281
AGGGCAATCT TGCAACCTTT TCTGCAGTAA GTGCATCCCA GACGACAACC TGAAGAGTGA 15965
.......... .......... .......... .......... .......... .......... 281
CGTATCATAG TTAAGCTTGC TGAAATACAA ATATATATAC TGTTCTCAAT TTGGAATTTA 15905
.......... .......... .......... .......... .......... .......... 281
CCTCATTGTT TTGTTCATCA ACTGATAGAA CAAATTCTTC GGTTTCATTG AAGACAGCCT 15845
.......... .......... .......... .......... .......... .......... 281
GGATAGTAAG AACAGTTATT ATCATATTTA TTGTCTATCA TAGCAAGGTT AGGTATGTTG 15785
.......... .......... .......... .......... .......... .......... 281
TTATCCTAAG CTGCAAGCTC AAACCAGCCT ATTTTCAAAT TAAAGAATTG CAATATTTTG 15725
.......... .......... .......... .......... .......... .......... 281
TTTCCTAAAA TTTTGGGTAA AAATAATATA TATGGCACAC GAGTAAATTT AAATCAGGAA 15665
|
.......... .......... .......... .......... .......... .......TAG 284
AAAATAATAA TCTTATAGAA ACACAGAGAA ACTAACCTGA CAACGAA 15618
||||||| | ||| | | || | | | || ||| | || || |||
TAAATAATTA TCTGA-A-AA A-ATATAGTT ACTTATTTGT CATAGAA 328
********************************************************************************
EST sequence 120 +strand (File: 25805124+)
1 TTTTTTTTTT TTTTTTTTTT TAAAACAAGA GTTTCGACTA GATTGCTACT CTTAATAAAT
61 TCGAGTAGTT CACACCTCGC GCAGGAATCT CTTAATGTAT GAATCAGTTC AGTTCCCACC
121 GAATTCAGTA AATAAATGCC ACATTACATA GGCCTCAATT GTTTCCAAAC CCAACATTTT
181 CAGACCGCAA AACAGAACCG CTACAAGGTT CTGTACAAGT TTATCTTGCA CCATATATGA
241 ACGAGGATGC TCTTCAGCCC ACACTACAAT CTTCACTCTT CTGTACAGTG TACATGCGCC
301 CAGTTCCTTC CACATATCTT ACCATTTAGG GCCCGTTTAG TTCCCCAAAA ATATCGCATC
361 GAATCTTTAG ACACATGCAT GAAGCATTAA ATATAGATNA AAAGAAAAAC TAATTGCACA
421 GTTATGGGGA AATAGCGAGA CGAATCTTTT AAGCCTAATT AGTCCGTGAT TAGCCATTAA
481 GTGCTACAGT AACCCACATG TGCTAATGAC GGCTTAATTA GTCTCAAAAG ATTCGTCTCG
541 CGGTTTCCAG GCGAGTTCTA AAATTAGTTT TTTCATTTGT GTCCGAAAAC CCTTCNCGAC
601 ATCCGGTTGT CTCGCCTCTG GCTTA
Predicted gene structure (within gDNA segment 19197 to 15763):
Exon 1 18875 18858 ( 18 n); cDNA 339 356 ( 18 n); score: 0.722
Intron 1 18857 17066 (1792 n); Pd: 0.904 (s: 0), Pa: 0.000 (s: 0.84)
Exon 2 17065 17000 ( 66 n); cDNA 357 422 ( 66 n); score: 0.879
Intron 2 16999 16744 ( 256 n); Pd: 0.000 (s: 0.92), Pa: 0.088 (s: 0.82)
Exon 3 16743 16544 ( 200 n); cDNA 423 619 ( 197 n); score: 0.770
Intron 3 16543 16478 ( 66 n); Pd: 0.886 (s: 0.64), Pa: 0.593 (s: 0)
Exon 4 16477 16472 ( 6 n); cDNA 620 625 ( 6 n); score: 0.500
PPA cDNA 21 1
MATCH 21326110- 25805124+ 0.797 290 0.464 C
PGS_21326110-_25805124+ (18875 18858,17065 17000,16743 16544,16477 16472)
Alignment (genomic DNA sequence = upper lines):
AGTACTCCAT AACTATCTGT AAGTTGAGAA TCGCATTTGC ATCAAGCCCA TGTTAAATGA 18816
||| | ||| || ||||
AGTTCCCCAA AAATATCG.. .......... .......... .......... .......... 356
CTCAAGAAGT AGAGAAATCT CCCAATGATA GTTATTTCTT AATGTTAATA AAATGGATAC 18756
.......... .......... .......... .......... .......... .......... 356
TATCAGGCTA TTTGATTGTA CCCATAGGTA GTCCTCTCCT TGGTAGCTTC CAAAGTAGCG 18696
.......... .......... .......... .......... .......... .......... 356
GACAACATTT GGATGGCTAC ACTGCTGCAG CATCTCAATT TCTCCCCGTA TGTCTTCATA 18636
.......... .......... .......... .......... .......... .......... 356
TCCTTCTTCC TGAAAACCAA AGATACATAC TTATATTTTG GAAAAATGCA ACGACTCGGA 18576
.......... .......... .......... .......... .......... .......... 356
AAACAGACAG CAACCACATT TATGAGATTC TCTCACAATT GAGCCCATGC AAACAAAATG 18516
.......... .......... .......... .......... .......... .......... 356
CTCACAACAA AAGCAATATG GTTGCCAAAT ATGAAATATG TCTCGGGTGG CCTTTCAGAA 18456
.......... .......... .......... .......... .......... .......... 356
TATTCACAGA ACTTTGTAAT AGAAAATTAG AAACTAACCC CTTCTGTTAG TGAGATAATC 18396
.......... .......... .......... .......... .......... .......... 356
TTGACAGCCA CAAGCTCCTG CGTTCTGAGA TCCCTTGCTT TGTACACTGC ACCATATGAG 18336
.......... .......... .......... .......... .......... .......... 356
CCTTTCCCTG CATTCCCAAT TGAATTTTGC ATTTCGCAAA ACAGCTCAAA GCTTCAGCCA 18276
.......... .......... .......... .......... .......... .......... 356
TTCTACAAGT AGACATACAG AACTAATGAA ACAATAATTC CAGAGCAAGA GGCGCACCAA 18216
.......... .......... .......... .......... .......... .......... 356
GCTCATGGAG CAGCTCGTAC TTGGTGGAAG GATCCTCTCT GGTAACACTG TCTGGCGCCG 18156
.......... .......... .......... .......... .......... .......... 356
AGCTCACTGA TGGCTTCCGC CTTGAATGCT GCTGCTGTTG TTGCTGCATC AGAGGCGACG 18096
.......... .......... .......... .......... .......... .......... 356
GTTGCCGGAG CTCCTCTGTC TGCTCCACCG CTGGACTCCA GAAAGAGGAC CCGAAACCCC 18036
.......... .......... .......... .......... .......... .......... 356
CGCCGCCGCC AGAAGCAGAT TCATAGGAAC TGGAACCCCC GCTGGTGTGG CGAATGAAGG 17976
.......... .......... .......... .......... .......... .......... 356
TGCCAGAGAA CGACCCGCGG GGGCTCGACG GGCTCCCTGG TCGGCGGATG AATGTGCCGG 17916
.......... .......... .......... .......... .......... .......... 356
AGACCGAGTC CCGGGGGCTC GACGGGGTGC TAGTCCGGCG GATGAATGTG CCAGAGACGG 17856
.......... .......... .......... .......... .......... .......... 356
ATTCGTGAGG GCTGGACGAG CCCCCGGAGC GACGGATGAA TGTGCCTGAG GCGGACCCTC 17796
.......... .......... .......... .......... .......... .......... 356
GAGGGCTGGA GGAGGTCCCC CCCGAGCGTG CGGTGGAGTG GACGACGAAG GTAGAGTATG 17736
.......... .......... .......... .......... .......... .......... 356
GGTCGTCATC GGTAGCGCGG GGGCTGGAGC GCCGCAGATC CAGGAACGGA GATCGAGCGG 17676
.......... .......... .......... .......... .......... .......... 356
AGGCCGGGGC GCCGCTCTTG AAGACCACCG TAGCGGAGAG GGAAGCATCG TCGGGGTCGG 17616
.......... .......... .......... .......... .......... .......... 356
AGGAGTAGGC GTCCTCGTCT TCGTCAAAGG AGGGGCCGCC GAAGTCCTTG GGGAGCCGCT 17556
.......... .......... .......... .......... .......... .......... 356
GGAGAAGCGG AGGCAGCGAG GAGGGGTCTT CCTCCTCGTC TTCCTCCGCC CGCGTGGACG 17496
.......... .......... .......... .......... .......... .......... 356
GGCCCCTGCC GCGCCTGCTG CCGCGGGCGT CGTCCTCGTC GTCATCGCCG TGGACGACGA 17436
.......... .......... .......... .......... .......... .......... 356
AGGTTGAGTA GACGTCGTTT CTCTTGGGAC GCGACCACGG CGAGCGCGGG GAGAAAGCCA 17376
.......... .......... .......... .......... .......... .......... 356
TGGCGTGCCA CGCGAGGTGG GAGGAGACGG TGAAGGTGCT CGTCGGGAAT GGCAAATGGG 17316
.......... .......... .......... .......... .......... .......... 356
GAAAATTGTT TAGTTGGAGC CAGTTCACTC GAATCTGGCA AATATGGGTC GGGCTCGGAT 17256
.......... .......... .......... .......... .......... .......... 356
GGGCCATCCC ATTCTAGGCC CACGTGACAT AGAGAATCCG GTCAAATTCT TCCTTCCCGC 17196
.......... .......... .......... .......... .......... .......... 356
AGTCCCGCTA GGCCCACACG ACCACACCCA GTCACCCGCA GCCACAGGCC GCAGAGAGCT 17136
.......... .......... .......... .......... .......... .......... 356
TCCTCGAAAG GAGCTTCTCT TTTTTCTCCA CTCACCCCAA AAACCAAAAA CTTTTCAAAA 17076
.......... .......... .......... .......... .......... .......... 356
TTTCTCAACA CATCAAATAT TACGACACAT GCATGAAGCA TTAAATATAT ACAAAAATAA 17016
|||| ||| | | ||||||| |||||||||| ||||||||| | |||| ||
.......... CATCGAATCT TTAGACACAT GCATGAAGCA TTAAATATAG ATNAAAAGAA 406
AAACTAATTG CACAGTTTAC CTATAAATCG CGAGATAAAT CTTTTAAACC TAGTTACTCT 16956
|||||||||| ||||||
AAACTAATTG CACAGT.... .......... .......... .......... .......... 422
ATGATTAGAC AATATTTGTC AAATAAAAAC GAAAGTGCTA CAGTCTCAAA AACCAAAAAG 16896
.......... .......... .......... .......... .......... .......... 422
TTTTCGAAAC TAAACAAGGC CTGACACTTG CACATCTTTT TTAAAAAATA TAAGGCCCTG 16836
.......... .......... .......... .......... .......... .......... 422
TTTAGTTCCC ACCTAAAAAA TTTTCATCCA TCACATTGAA TCTTTAGACA CATACATAAA 16776
.......... .......... .......... .......... .......... .......... 422
ACATTAAATG TAGATAAAAA ATAATTACAC AGTTTGGTTG AAAATCGCGA GATGAATTTT 16716
| ||| | |||| |||| || |||| ||
.......... .......... .......... ..TATGG--G GAAATAGCGA GACGAATCTT 448
TTAAGCCTAG TTAGTCCATG ATTAGCC-TT AAGTGCTACA GTAACCCACA TGTGCTAATA 16657
||||||||| ||||||| || ||||||| || |||||||||| |||||||||| |||||||||
TTAAGCCTAA TTAGTCCGTG ATTAGCCATT AAGTGCTACA GTAACCCACA TGTGCTAATG 508
ATAGATTAAT TATACTTAAT AGATTCGTCT TGCAGTTTCC TGACGAGTTA TGTAATTTGT 16597
| | ||||| || || || |||||||||| || |||||| | |||||| | |||| |
ACGGCTTAAT TAGTCTCAAA AGATTCGTCT CGCGGTTTCC AGGCGAGTTC TAAAATTAG- 567
TTTTTTTATT AGTTTTTAAA AACCCCTCCC GACATCCTTC CGACATATCC GATGTGACCT 16537
|||||| ||| || | || ||||| || | ||||||| | | | || |
TTTTTTCATT TGTGTCCGAA AACCCTTCNC GACATCCGGT TGTC-TCGCC TCT....... 619
AAAAAATTTT CATCTTCAAT CTAAACATGC CCTAAGTGAA ATGCAATAAT GTGTTGTAGA 16477
.......... .......... .......... .......... .......... .........G 620
ACTTT 16472
|||
GCTTA 625
********************************************************************************
EST sequence 117 -strand (File: 12622939-)
1 TTTTTTTTTT TTTTTCTTGT AAGTTACGGG TCCTTAAGTT GGTTATGCAA GATGGAGGAG
61 GAATAACAGG GAAGGTAAGT ACCCAGGTAA CTACCCAACT ACCCAACGGT ATTTAGTTGT
121 ACGGCCAATT TTTTTTTTAA AGTATACGGA CACATATTTA AAGTATTAAA TATAGATTAA
181 TAACAAAATA AATTACAGAT TCCGCCTGTA AGCTAANAGA CGAATCTATT AAGCCTAATT
241 AATCTGTCAT TAGCAAATGT TTACTGTAGC ACCATATTGT CAAATCATGA CGTAATTAAA
301 CTCAAAAAAT TTGACTCGCA ATTTACATGC AAACTGTGTA ATTGGTTTTT TTACTCGTCC
361 ACATTTAATG CTATATACAT GTGTCTAAAT ATTTGATGTG ACNAAATTTC TGAAAGTTCG
421 AGGAGAACTA AACATATCCA ATTT
Predicted gene structure (within gDNA segment 15237 to 17587):
Exon 1 15884 15903 ( 20 n); cDNA 158 177 ( 20 n); score: 0.550
Intron 1 15904 16585 ( 682 n); Pd: 0.991 (s: 0), Pa: 0.000 (s: 0.72)
Exon 2 16586 16685 ( 100 n); cDNA 178 273 ( 96 n); score: 0.770
Intron 2 16686 16940 ( 255 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.74)
Exon 3 16941 17066 ( 126 n); cDNA 274 399 ( 126 n); score: 0.762
PPA cDNA 15 1
MATCH 21326110+ 12622939- 0.765 246 0.554 C
PGS_21326110+_12622939- (15884 15903,16586 16685,16941 17066)
Alignment (genomic DNA sequence = upper lines):
TTGATGAACA AAACAATGAG GTAAATTCCA AATTGAGAAC AGTATATATA TTTGTATTTC 15943
|| | | | ||| | ||
TTAAAGTATT AAATATAGAT .......... .......... .......... .......... 177
AGCAAGCTTA ACTATGATAC GTCACTCTTC AGGTTGTCGT CTGGGATGCA CTTACTGCAG 16003
.......... .......... .......... .......... .......... .......... 177
AAAAGGTTGC AAGATTGCCC TCTGGCAGCA CTGGTGCTCC CAGATGGCTC GACCACTCCC 16063
.......... .......... .......... .......... .......... .......... 177
CAGTTGAACC AGTTTTTGTT ATTTGTGGAA ATGATAGATC GATCAGATTC TGGAAACAAA 16123
.......... .......... .......... .......... .......... .......... 177
CCGTATAGCT TGTAGATTCA ACCATTCAAA TCAAAAGTAT GCTTTCAGTA TTACGTTTCA 16183
.......... .......... .......... .......... .......... .......... 177
GGAGGAATGT GCTCATGTAA CTTTAGTTGT ATATGGGAGA AATTTGCATA AGCATTTTTT 16243
.......... .......... .......... .......... .......... .......... 177
TTATTGGAAA CTGCATAAGC AATTGATTGA TCTAATAGCA AACCCCAATG ATATGTTTTT 16303
.......... .......... .......... .......... .......... .......... 177
TTTTTGGCTC TGCATAGCTG ATGACAGTTG TATGAACCCT TGACCTGATT CTTATTGGTC 16363
.......... .......... .......... .......... .......... .......... 177
AGGCCCTTTT CGATGATTTG CTATTTTATC CCAATTGTGG ATTGCGGAAT ATATTTCTTC 16423
.......... .......... .......... .......... .......... .......... 177
TTCGAATGTA ATGATGGTCT CGCCCTACCA CATGTGTGAT AGCCTATAAA AGTTCTACAA 16483
.......... .......... .......... .......... .......... .......... 177
CACATTATTG CATTTCACTT AGGGCATGTT TAGATTGAAG ATGAAAATTT TTTAGGTCAC 16543
.......... .......... .......... .......... .......... .......... 177
ATCGGATATG TCGGAAGGAT GTCGGGAGGG GTTTTTAAAA ACTAATAAAA AAAACAAATT 16603
|||| || |||| |||||
.......... .......... .......... .......... ..TAAT-AAC AAAATAAATT 194
ACATAACTCG TCAGGAAACT GCAAGACGAA TCTATTAAGT ATAATTAATC TATTATTAGC 16663
||| | || | | || || ||||||| ||||||||| ||||||||| | | ||||||
ACAGATTCCG CCTGTAAGCT AANAGACGAA TCTATTAAGC CTAATTAATC TGTCATTAGC 254
ACATGTGGGT TACTGTAGCA CTTAAGGCTA ATCATGGACT AACTAGGCTT AAAAAATTCA 16723
| |||| | |||||||||| |
AAATGT---T TACTGTAGCA CC........ .......... .......... .......... 273
TCTCGCGATT TTCAACCAAA CTGTGTAATT ATTTTTTATC TACATTTAAT GTTTTATGTA 16783
.......... .......... .......... .......... .......... .......... 273
TGTGTCTAAA GATTCAATGT GATGGATGAA AATTTTTTAG GTGGGAACTA AACAGGGCCT 16843
.......... .......... .......... .......... .......... .......... 273
TATATTTTTT AAAAAAGATG TGCAAGTGTC AGGCCTTGTT TAGTTTCGAA AACTTTTTGG 16903
.......... .......... .......... .......... .......... .......... 273
TTTTTGAGAC TGTAGCACTT TCGTTTTTAT TTGACAAATA TTGTCTAATC ATAGAGTAAC 16963
||| ||||| |||| || ||||
.......... .......... .......... .......ATA TTGTCAAATC ATGACGTAAT 296
TAGGTTTAAA AGATTTATCT CGCGATTTAT AGGTAAACTG TGCAATTAGT TTTTATTTTT 17023
|| | ||| | |||| || ||| ||||| | | |||||| || |||| || |||| | |
TAAACTCAAA AAATTTGACT CGCAATTTAC ATGCAAACTG TGTAATTGGT TTTTTTACTC 356
GTATATATTT AATGCTTCAT GCATGTGTCG TAATATTTGA TGT 17066
|| | |||| |||||| || |||||||| ||||||||| |||
GTCCACATTT AATGCTATAT ACATGTGTCT AAATATTTGA TGT 399
********************************************************************************
EST sequence 116 +strand (File: 15856972+)
1 GTGAATCCTT TGCCTTATAG TCACATTTGG AAGTTAGAGG AATGCTTATA TGGTGAGTTT
61 CCAGAGCTTC TGTTGGAGAT TGAGATCCTG CTATGGAAAC GAATGAGATC GATGGGCTAG
121 GATTCGAGGA TAAGTTTTAG TGGCTTTGAG ATATGGCACA TGCATTGTAA TATGGGTGAA
181 TTGTCTGTAT GACGTTTAAT CTGAGATCAC TGGATCTCTT GTTAGGGCTT TAGGTGGTGT
241 TTGGATCCAC GGGACTTAAC TTTAGTCTCT GTATTTAGAC CCTAATTTAG TCTATTAAAT
301 ATAGACTACT TACCAAACTA ATTACATAAA TGAAAGCTAA TTTGCGAGAT AAATTTTTTA
361 AGCCTAATTA ATCTATATTT AGAGAATGTT TACTGTAGCA TCACATAGGC TAATCATGGA
421 TTAATTAGGC TCAATAGATT CGTCTGGATT AATTAGGCTT AATAGATTCG TCTTGTGAAT
481 TAGTCCCAGA TTATGGATGT GTTAAAAAAA AAAAAAAAAA AAA
Predicted gene structure (within gDNA segment 18776 to 16080):
Exon 1 17037 16939 ( 99 n); cDNA 293 391 ( 99 n); score: 0.717
Intron 1 16938 16680 ( 259 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.76)
Exon 2 16679 16626 ( 54 n); cDNA 392 446 ( 55 n); score: 0.759
PPA cDNA 504 523
MATCH 21326110- 15856972+ 0.732 153 0.293 C
PGS_21326110-_15856972+ (17037 16939,16679 16626)
Alignment (genomic DNA sequence = upper lines):
CATTAAATAT ATACAAAAAT AAAAACTAAT TGCACAGTTT ACCTATAAAT CGCGAGATAA 16978
||||||||| | || | |||||||| | || | | | ||| | |||||||||
TATTAAATAT AGACTACTTA CCAAACTAAT TACATAAATG AAAGCTAATT TGCGAGATAA 352
ATCTTTTAAA CCTAGTTACT CTATGATTAG ACAATATTTG TCAAATAAAA ACGAAAGTGC 16918
|| |||||| |||| ||| | |||| |||| | ||| |||
ATTTTTTAAG CCTAATTAAT CTATATTTAG AGAATGTTT. .......... .......... 391
TACAGTCTCA AAAACCAAAA AGTTTTCGAA ACTAAACAAG GCCTGACACT TGCACATCTT 16858
.......... .......... .......... .......... .......... .......... 391
TTTTAAAAAA TATAAGGCCC TGTTTAGTTC CCACCTAAAA AATTTTCATC CATCACATTG 16798
.......... .......... .......... .......... .......... .......... 391
AATCTTTAGA CACATACATA AAACATTAAA TGTAGATAAA AAATAATTAC ACAGTTTGGT 16738
.......... .......... .......... .......... .......... .......... 391
TGAAAATCGC GAGATGAATT TTTTAAGCCT AGTTAGTCCA TGATTAGCCT TAAGTGCTAC 16678
||
.......... .......... .......... .......... .......... ........AC 393
AGTAAC-CCA CATGTGCTAA TAATAGATTA ATTATACTTA ATAGATTCGT CTT 16626
||| | || ||| ||||| | || ||||| |||| || | |||||||||| ||
TGTAGCATCA CATAGGCTAA TCATGGATTA ATTAGGCTCA ATAGATTCGT CTG 446
********************************************************************************
EST sequence 115 -strand (File: 15856082-)
1 TTTTTTTTTT TTTTTTTTTT AACTAAGACC CTATTTAGAT GGGACTAAAA CTTTTAAGTC
61 CTTATCACAT CGGATGTTGG ATATTAATTA CAAATATTAA ACGTAGACTA TTAATATAAC
121 ACATCCATAA TCTTGGACTA ATTCACAAGA CGAATCTATT AAGCCTAATT AATCCAGACG
181 AATCTATGAG CCTAATTAAT CCATGATTAG CCTATGTGAT GCTACAGTAA ACATTCTCTA
241 AATATAGATT AATTAGGCTT AAAAAATTTA TCTCGCAAAT TAGCTTTCAT TTATGTAATT
301 AGTTTGGTAA GTCAGTCTAT ATTTAATAGA CTAAATTAGG GTCTAAATAC AGAGACTAAA
361 GTTAAGTCCC TGGATCCAAA CACCACCTAA AGCCCTAACA AGAGATCCAT GATCTCAGAT
421 TAAACGTCAT ACAGACAATT CACCCATATT ACAAGTGGAT GGGCATATCT CAAAGGCATA
481 AAATTATCTC GAATCTAGCC
Predicted gene structure (within gDNA segment 15595 to 18181):
Exon 1 15775 15846 ( 72 n); cDNA 110 177 ( 68 n); score: 0.625
Intron 1 15847 16628 ( 782 n); Pd: 0.000 (s: 0.58), Pa: 0.000 (s: 0.73)
Exon 2 16629 16679 ( 51 n); cDNA 178 228 ( 51 n); score: 0.745
Intron 2 16680 16938 ( 259 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.82)
Exon 3 16939 17036 ( 98 n); cDNA 229 327 ( 99 n); score: 0.724
PPA cDNA 20 1
MATCH 21326110+ 15856082- 0.697 221 0.442 C
PGS_21326110+_15856082- (15775 15846,16629 16679,16939 17036)
Alignment (genomic DNA sequence = upper lines):
CTTAGGATAA CAACATACCT AACCTTGCTA TGATAGACAA TAAATATGAT AATAACTGTT 15834
||| |||| | |||| | | || |||| | || |||| | || | | ||| |
ATTAATATAA C-ACATCCAT AATCTTGGAC TAATTCACAA GACGAAT-CT ATTAAGCCTA 167
CTTACTATCC AGGCTGTCTT CAATGAAACC GAAGAATTTG TTCTATCAGT TGATGAACAA 15894
||| |||| ||
ATTA--ATCC AG........ .......... .......... .......... .......... 177
AACAATGAGG TAAATTCCAA ATTGAGAACA GTATATATAT TTGTATTTCA GCAAGCTTAA 15954
.......... .......... .......... .......... .......... .......... 177
CTATGATACG TCACTCTTCA GGTTGTCGTC TGGGATGCAC TTACTGCAGA AAAGGTTGCA 16014
.......... .......... .......... .......... .......... .......... 177
AGATTGCCCT CTGGCAGCAC TGGTGCTCCC AGATGGCTCG ACCACTCCCC AGTTGAACCA 16074
.......... .......... .......... .......... .......... .......... 177
GTTTTTGTTA TTTGTGGAAA TGATAGATCG ATCAGATTCT GGAAACAAAC CGTATAGCTT 16134
.......... .......... .......... .......... .......... .......... 177
GTAGATTCAA CCATTCAAAT CAAAAGTATG CTTTCAGTAT TACGTTTCAG GAGGAATGTG 16194
.......... .......... .......... .......... .......... .......... 177
CTCATGTAAC TTTAGTTGTA TATGGGAGAA ATTTGCATAA GCATTTTTTT TATTGGAAAC 16254
.......... .......... .......... .......... .......... .......... 177
TGCATAAGCA ATTGATTGAT CTAATAGCAA ACCCCAATGA TATGTTTTTT TTTTGGCTCT 16314
.......... .......... .......... .......... .......... .......... 177
GCATAGCTGA TGACAGTTGT ATGAACCCTT GACCTGATTC TTATTGGTCA GGCCCTTTTC 16374
.......... .......... .......... .......... .......... .......... 177
GATGATTTGC TATTTTATCC CAATTGTGGA TTGCGGAATA TATTTCTTCT TCGAATGTAA 16434
.......... .......... .......... .......... .......... .......... 177
TGATGGTCTC GCCCTACCAC ATGTGTGATA GCCTATAAAA GTTCTACAAC ACATTATTGC 16494
.......... .......... .......... .......... .......... .......... 177
ATTTCACTTA GGGCATGTTT AGATTGAAGA TGAAAATTTT TTAGGTCACA TCGGATATGT 16554
.......... .......... .......... .......... .......... .......... 177
CGGAAGGATG TCGGGAGGGG TTTTTAAAAA CTAATAAAAA AAACAAATTA CATAACTCGT 16614
.......... .......... .......... .......... .......... .......... 177
CAGGAAACTG CAAGACGAAT CTATTAAGTA TAATTAATCT ATTATTAGCA CATGTG-GGT 16673
|||||| ||| | || ||||||||| || |||||| ||||| |
.......... ....ACGAAT CTA-TGAGCC TAATTAATCC ATGATTAGCC TATGTGATGC 222
TACTGTAGCA CTTAAGGCTA ATCATGGACT AACTAGGCTT AAAAAATTCA TCTCGCGATT 16733
||| ||
TACAGT.... .......... .......... .......... .......... .......... 228
TTCAACCAAA CTGTGTAATT ATTTTTTATC TACATTTAAT GTTTTATGTA TGTGTCTAAA 16793
.......... .......... .......... .......... .......... .......... 228
GATTCAATGT GATGGATGAA AATTTTTTAG GTGGGAACTA AACAGGGCCT TATATTTTTT 16853
.......... .......... .......... .......... .......... .......... 228
AAAAAAGATG TGCAAGTGTC AGGCCTTGTT TAGTTTCGAA AACTTTTTGG TTTTTGAGAC 16913
.......... .......... .......... .......... .......... .......... 228
TGTAGCACTT TCGTTTTTAT TTGACAAATA TTGTCTAATC ATAGAGTAAC TAGGTTTAAA 16973
||| | || ||||| ||||| ||| |||| |||||
.......... .......... .....AAACA TTCTCTAAAT ATAGATTAAT TAGGCTTAAA 263
AGATTTATCT CGCGATTTAT AGGTAAACTG TGCAATTAGT TT-TTATTTT TGTATATATT 17032
| |||||||| ||| | ||| | | | || ||||||| || || | || ||||||
AAATTTATCT CGCAAATTAG CTTTCATTTA TGTAATTAGT TTGGTAAGTC AGTCTATATT 323
TAAT 17036
||||
TAAT 327
********************************************************************************
EST sequence 40 -strand (File: 13152848-)
1 TAAATTGTCT TGCAGTTTCC TGACGAGCTA TGTAATTTGT TTTTTTATTA GTTTCTAAAA
61 ACCCCTCCCG ACATCCTTCC GACACATCCG ATGTGACACC CAAAAAATTT TCGTTCCCAA
121 TCTAAACAGG CCCTTATTTC AAATTCTAGC ATAGATGGGG CGGCATACTC TAATTATTAC
181 ATCAACACAG TTGCCTGAAA GTCCTCCGCC TACGTTTGGA GAGTTGCTTA AACATCCTCC
241 TCAAGACAGA CTGGATTGAT AGGCCTGCCA CCCTTGGATG CGATACTGCC TCGCGGTCTC
301 TGCAGGGTTA CTCGCCTTTA TAATCCCTCT TCCGACTATA ATTATATCAC TGCCTCTATC
361 GTTTATGACA GAAAAGGGAG TGTTATATTG TTGCCCAAGG CCATCTCCTC CAGCAGCCAT
421 CTGAACTCCA GGAGTGGCAT GGATAAACGC TGGGCTCGAC GGTGCTGGTG ACCAAGATGC
481 AGGATTTACT GATATAAATC CTATTACAAA GTCAGGATGT TGCTCAGCGA TCTTTACAGC
541 CGCAGCAGTG TAGTCTCCAT AAG
Predicted gene structure (within gDNA segment 16965 to 13909):
Exon 1 16637 16502 ( 136 n); cDNA 1 136 ( 136 n); score: 0.875
Intron 1 16501 13926 (2576 n); Pd: 0.000 (s: 0.77), Pa: 0.668 (s: 0)
Exon 2 13925 13909 ( 17 n); cDNA 137 152 ( 16 n); score: 0.588
MATCH 21326110- 13152848- 0.875 153 0.272 C
PGS_21326110-_13152848- (16637 16502,13925 13909)
Alignment (genomic DNA sequence = upper lines):
TAGATTCGTC TTGCAGTTTC CTGACGAGTT ATGTAATTTG TTTTTTTTAT TAGTTTTTAA 16578
|| ||| ||| |||||||||| |||||||| | |||||||||| ||||||||| |||||| |||
TAAATT-GTC TTGCAGTTTC CTGACGAGCT ATGTAATTTG -TTTTTTTAT TAGTTTCTAA 58
AAACCCCTCC CGACATCCTT CCGACATATC CGATGTG--A CCTAAAAAAT TTTCATCTTC 16520
|||||||||| |||||||||| |||||| ||| ||||||| | || ||||||| |||| | |
AAACCCCTCC CGACATCCTT CCGACACATC CGATGTGACA CCCAAAAAAT TTTCGTTCCC 118
AATCTAAACA TGCCCTAAGT GAAATGCAAT AATGTGTTGT AGAACTTTTA TAGGCTATCA 16460
|||||||||| ||||| |
AATCTAAACA GGCCCTTA.. .......... .......... .......... .......... 136
CACATGTGGT AGGGCGAGAC CATCATTACA TTCGAAGAAG AAATATATTC CGCAATCCAC 16400
.......... .......... .......... .......... .......... .......... 136
AATTGGGATA AAATAGCAAA TCATCGAAAA GGGCCTGACC AATAAGAATC AGGTCAAGGG 16340
.......... .......... .......... .......... .......... .......... 136
TTCATACAAC TGTCATCAGC TATGCAGAGC CAAAAAAAAA ACATATCATT GGGGTTTGCT 16280
.......... .......... .......... .......... .......... .......... 136
ATTAGATCAA TCAATTGCTT ATGCAGTTTC CAATAAAAAA AATGCTTATG CAAATTTCTC 16220
.......... .......... .......... .......... .......... .......... 136
CCATATACAA CTAAAGTTAC ATGAGCACAT TCCTCCTGAA ACGTAATACT GAAAGCATAC 16160
.......... .......... .......... .......... .......... .......... 136
TTTTGATTTG AATGGTTGAA TCTACAAGCT ATACGGTTTG TTTCCAGAAT CTGATCGATC 16100
.......... .......... .......... .......... .......... .......... 136
TATCATTTCC ACAAATAACA AAAACTGGTT CAACTGGGGA GTGGTCGAGC CATCTGGGAG 16040
.......... .......... .......... .......... .......... .......... 136
CACCAGTGCT GCCAGAGGGC AATCTTGCAA CCTTTTCTGC AGTAAGTGCA TCCCAGACGA 15980
.......... .......... .......... .......... .......... .......... 136
CAACCTGAAG AGTGACGTAT CATAGTTAAG CTTGCTGAAA TACAAATATA TATACTGTTC 15920
.......... .......... .......... .......... .......... .......... 136
TCAATTTGGA ATTTACCTCA TTGTTTTGTT CATCAACTGA TAGAACAAAT TCTTCGGTTT 15860
.......... .......... .......... .......... .......... .......... 136
CATTGAAGAC AGCCTGGATA GTAAGAACAG TTATTATCAT ATTTATTGTC TATCATAGCA 15800
.......... .......... .......... .......... .......... .......... 136
AGGTTAGGTA TGTTGTTATC CTAAGCTGCA AGCTCAAACC AGCCTATTTT CAAATTAAAG 15740
.......... .......... .......... .......... .......... .......... 136
AATTGCAATA TTTTGTTTCC TAAAATTTTG GGTAAAAATA ATATATATGG CACACGAGTA 15680
.......... .......... .......... .......... .......... .......... 136
AATTTAAATC AGGAAAAAAT AATAATCTTA TAGAAACACA GAGAAACTAA CCTGACAACG 15620
.......... .......... .......... .......... .......... .......... 136
AAATTGTCTG CGAATGGCTC CTGCATATTG CTTCACAAGT CGTCCAGTGC CAACTTCCCA 15560
.......... .......... .......... .......... .......... .......... 136
TAACTTGACA CAAGAATCTT TCCCACAAGA TAGGACATAC CTGAAAGAAC GTAGTAAACT 15500
.......... .......... .......... .......... .......... .......... 136
TCATAACAGA TAACCAGAAT ACAGTGTGCA GTTTTATGAA AGAAATCCAT GAACTATCTA 15440
.......... .......... .......... .......... .......... .......... 136
AGCATATACT TCGGGTAGTC AAAGTTCACT ACATCAATTT TTTAGATCAA TCTTATATGC 15380
.......... .......... .......... .......... .......... .......... 136
AAGTGCATTC ACGCTGCATA TAACCACATA AACACTAGGC CTTTCAGAAG AAGTCTAAAA 15320
.......... .......... .......... .......... .......... .......... 136
AGTGTTTATA GGCAAGTTAG TTGTTTAGTG GTGAAATAGT AGGGTAAAGG AGAAAGAGTT 15260
.......... .......... .......... .......... .......... .......... 136
ATTCGTGTTA TAAAGTTACG ACACGTCTGA AACACAGGAA ATTATCCAGG ACATGTTATA 15200
.......... .......... .......... .......... .......... .......... 136
AATCATTCAG AATCACTACA AGATTCCCAC ATTCCAAACA GGGTTTGAAG TAGTTACTGT 15140
.......... .......... .......... .......... .......... .......... 136
CTTGAATCAT ACAGCATATG CCTTTCTCTC TGTTCTTCAA ACCAAACAAT GACTGGATTT 15080
.......... .......... .......... .......... .......... .......... 136
TATCTTGAGG GAAGAGCACC TTAGACATGC TGGTAGCTCG CTTACCTCTC ATCTCTGGTG 15020
.......... .......... .......... .......... .......... .......... 136
AAAATTGCGC TAGTAGCTTC TGCAGATCCA TGTGCTCCAA TAATAGGTCG AACACATTCA 14960
.......... .......... .......... .......... .......... .......... 136
GCAGATACTC CATCCCAAAT GCGCAGAGAA CCATCTTTAG AAGCAGTCAC ATACAAGCTC 14900
.......... .......... .......... .......... .......... .......... 136
CCAGTACAGG AGTAGCGTAC CTGGCAGCAA CATCAGTAAG CATGGCTGGC GGAGAACTTT 14840
.......... .......... .......... .......... .......... .......... 136
GATGAGAATA TAACCAATGC AATCTAATGC TTGTGAATCA GAAGGAAAGA GAAAAGCTAC 14780
.......... .......... .......... .......... .......... .......... 136
CTGGTTAATG GGAGAACTAG AATCCTGTGC ATTTGCTGAT AAGTAGCATG TAAAAGTATT 14720
.......... .......... .......... .......... .......... .......... 136
TATATCATAT AAATGAGCAA CTGGGTGATC AGTCCCTGCA AATAATTTTA TCAGTGTCAC 14660
.......... .......... .......... .......... .......... .......... 136
TTGCTTCCAA ATATATGAAA ATGAGTTTTT TTAAAAAAAA TACATATTTG AATGTTAATA 14600
.......... .......... .......... .......... .......... .......... 136
TTTGACTATA TGTAAGAAGA AAATTCCATA CGATATGCTT GCAGTATTTT TCAAATGCCC 14540
.......... .......... .......... .......... .......... .......... 136
ACGAGACAGA AACTGTTGAT CCAGGAACGA AATCCAAATT CTTAAGCCCA AATATCAAAT 14480
.......... .......... .......... .......... .......... .......... 136
TGTTTTGGTG AAATGATTAA ATTACTTTAC AGATAACAAC TGAAAACATG TTAACAACTT 14420
.......... .......... .......... .......... .......... .......... 136
ATAATGCATA AAAATCAGAG CATATCAAAC TGATATCAGA CATCAAGAAT CAGTTAATCA 14360
.......... .......... .......... .......... .......... .......... 136
CAGCAGAACT AGAAATCAAA TTTAAATTTA GTGAAAAGAT CATAGTACCT GCTAAAAGGT 14300
.......... .......... .......... .......... .......... .......... 136
AATCCCCACA AGGATGAAAA CATACAGATC TAACATTATG AGTATCCTGC CAAGCATTAA 14240
.......... .......... .......... .......... .......... .......... 136
CAAATGAGCC TGGTTAAATG CAATGAACAC ACCATTTTAC ATGATATATA GAGAGATTGG 14180
.......... .......... .......... .......... .......... .......... 136
ATTGCTAGAA TTTACAACCT GAATAACTCT GAACGCTTTC CTCGCATTGG TCTTTGAGAA 14120
.......... .......... .......... .......... .......... .......... 136
GTCAAAAAAT CTGTTGAGCA AAATTTTTTC ATGTACAAAA CAATAACACA GATAGCAATT 14060
.......... .......... .......... .......... .......... .......... 136
AATACCGCAA AAAATTCCTA AAAAATCATG CTTAATCCTA GTATGAGCAC TTCAAATAGA 14000
.......... .......... .......... .......... .......... .......... 136
CAATTTAACA GCACGGAGTG TAGACATCAA GGATAAGCAT ACTTTATTGT ATTGTCTTTT 13940
.......... .......... .......... .......... .......... .......... 136
GCAGCTGATA TCAGTATTGG ACTCTCAGGA T 13909
| | | ||| || | |
.......... ....TTTCAA ATTCT-AGCA T 152
********************************************************************************
EST sequence 52 -strand (File: 6859196-)
1 CCTAGTTACT CCATGATTAG CCTTAAGTGC TACAGTAACC CACATATGCT AATGACAGAT
61 TAATTATGCT TAATAAATTT GTCTTGCAGT TTCCTGACGA GCTATGTAAT TTATTTTTTT
121 ATTAGTTTCT AAAAATCCCT CCCGACATCC TTCCCACACA TTCGATGTGA CACCCAAAAA
181 ATTTTCAGCC CCAATCTAAA CAGGCCAAGC ATGCTGATCG TCGTCATGGC GCTCCGCCGG
241 CGGCGTCAGC GTCAGCAGCA GCAGGCGGTT TACACGCGTA GATTTTTGTG CATGTTCGGC
301 CAGTGTATGG CTGGCCACGA GGCACGGAAG GCGTGCCGCC GGGGATCAAG GCTCCATAGC
361 TCCCCTCCCC TAGCCCTCTC CCTGCGGCCA CGTGGACAAC GTCCATGGTA GAGACGACGA
421 GGAACGCCAT CAGGAACACC ATGCAAAGCT GCTGCCTCCC CATCTTCTCG ATCTCTTCCT
481 GATCGATTTC CTCCTCGTGC
Predicted gene structure (within gDNA segment 17051 to 14660):
Exon 1 16710 16506 ( 205 n); cDNA 1 206 ( 206 n); score: 0.883
MATCH 21326110- 6859196- 0.883 205 0.410 C
PGS_21326110-_6859196- (16710 16506)
Alignment (genomic DNA sequence = upper lines):
CCTAGTTAGT CCATGATTAG CCTTAAGTGC TACAGTAACC CACATGTGCT AATAATAGAT 16651
|||||||| | |||||||||| |||||||||| |||||||||| ||||| |||| ||| | ||||
CCTAGTTACT CCATGATTAG CCTTAAGTGC TACAGTAACC CACATATGCT AATGACAGAT 60
TAATTATACT TAATAGATTC GTCTTGCAGT TTCCTGACGA GTTATGTAAT TTGTTTTTTT 16591
||||||| || ||||| ||| |||||||||| |||||||||| | |||||||| || ||||||
TAATTATGCT TAATAAATTT GTCTTGCAGT TTCCTGACGA GCTATGTAAT TT-ATTTTTT 119
TATTAGTTTT TAAAAACCCC TCCCGACATC CTTCCGACAT ATCCGATGTG --ACCTAAAA 16533
||||||||| |||||| ||| |||||||||| ||||| ||| || ||||||| ||| ||||
TATTAGTTTC TAAAAATCCC TCCCGACATC CTTCCCACAC ATTCGATGTG ACACCCAAAA 179
AATTTTCATC TTCAATCTAA ACATGCC 16506
|||||||| | |||||||| ||| |||
AATTTTCAGC CCCAATCTAA ACAGGCC 206
********************************************************************************
EST sequence 59 -strand (File: 9855330-)
1 AGGCTTACGA ACATCCCACT TACATCTCCA TCACGGGTAC ATGCACACAC AGCGCCTCCG
61 CCCAATTACA GTTTGGATCT TATTAAATTA TTATATAGAC TCATACTAAC CTGATTACTA
121 CTAGTGATTA TGTAGAGCCT AGACTAGAGG CGCCTTGTTG TTCAAAGGAA ATTATTATTC
181 TTAGGCCCTG TTTAGTTCCC CACCAAAAAT TTTTTCATCC ATCCCATCGA ATCTTTGGAC
241 ACATGCATGG AACATTAAAT GTAGATAAAA AAATAAACTA ATTACACAGT TTAGTTGAGA
301 ATCGCGAGAC GAATCTTTTA AGCCTAGTTA CTCCATGATT AGCCTTAAGT GCTACAGTAA
361 CCCACATATG CTAATGACAG ATTAATTATG CTTAATAAAT TTGTCTTGCA GTTTCCTGAC
421 GAGCTATGTA ATTTATTTTT TTATTAGTTT CTAAAAATCC CTCCCGACAT CCTTCCCACA
481 CATTCGATGT GACACCCAAA AAATTTTCAG CCCCAATCTA AACAGGCCAA GCATGCTGAT
541 CGTCGTCATG GCGCTCCGCC GGCGGCGTCA GCGTCAGCAG CAGCAGGCGG TTTA
Predicted gene structure (within gDNA segment 18058 to 15800):
Exon 1 16843 16511 ( 333 n); cDNA 183 523 ( 341 n); score: 0.850
MATCH 21326110- 9855330- 0.850 333 0.561 C
PGS_21326110-_9855330- (16843 16511)
Alignment (genomic DNA sequence = upper lines):
AGGCCCTGTT TAGTT-CCCA CCTAAAAAAT TTTCATCCAT CACATTGAAT CTTTAGACAC 16785
|||||||||| ||||| |||| || |||| | |||||||||| | ||| |||| |||| |||||
AGGCCCTGTT TAGTTCCCCA CCAAAAATTT TTTCATCCAT CCCATCGAAT CTTTGGACAC 242
ATACATAAAA CATTAAATGT AGAT----AA A-AAA-TAAT TACACAGTTT GGTTGAAAAT 16731
|| ||| || |||||||||| |||| || | ||| |||| |||||||||| ||||| |||
ATGCATGGAA CATTAAATGT AGATAAAAAA ATAAACTAAT TACACAGTTT AGTTGAGAAT 302
CGCGAGATGA ATTTTTTAAG CCTAGTTAGT CCATGATTAG CCTTAAGTGC TACAGTAACC 16671
||||||| || || ||||||| |||||||| | |||||||||| |||||||||| ||||||||||
CGCGAGACGA ATCTTTTAAG CCTAGTTACT CCATGATTAG CCTTAAGTGC TACAGTAACC 362
CACATGTGCT AATAATAGAT TAATTATACT TAATAGATTC GTCTTGCAGT TTCCTGACGA 16611
||||| |||| ||| | |||| ||||||| || ||||| ||| |||||||||| ||||||||||
CACATATGCT AATGACAGAT TAATTATGCT TAATAAATTT GTCTTGCAGT TTCCTGACGA 422
GTTATGTAAT TTGTTTTTTT TATTAGTTTT TAAAAACCCC TCCCGACATC CTTCCGACAT 16551
| |||||||| || |||||| ||||||||| |||||| ||| |||||||||| ||||| |||
GCTATGTAAT TT-ATTTTTT TATTAGTTTC TAAAAATCCC TCCCGACATC CTTCCCACAC 481
ATCCGATGTG --ACCTAAAA AATTTTCATC TTCAATCTAA AC 16511
|| ||||||| ||| |||| |||||||| | |||||||| ||
ATTCGATGTG ACACCCAAAA AATTTTCAGC CCCAATCTAA AC 523
********************************************************************************
EST sequence 119 +strand (File: 4714617+)
1 CATGTAAATA TGGGCCTGTT TAGTTTTCAA ACAAAATTTT TCACGCTGTC ACATCGAATG
61 TTTGGACACA TGCATAGTGT TAAATGTAGA AAAAAAAACC AATTACATAG TTCGACAGGA
121 AATTGCGAGA TGAATCTTTT AAGCTTAATT GCGCCAGGAT TTGATAATGT GGTGCTACAA
181 TAAACATTTG TTGATGACGG ATTAATTAGG CTTGATAAAT TCGTCTCGAA GTTTTCTGGC
241 AGAATCTGTA ATTTGTTTTG TTATTAGACT ACGTTTAATA CTTTAAATGT GTGTCCGTAT
301 ATCCGATGTG ACATGTAGGG GCAAATTTTT TTGCCAACTA AACAGGCCCT ATATATGCCA
361 TCAATTTGAA TATGAACAGA AAATTTTCTA AGCATATATA CATAAATATT GTATGCCAAA
421 AAAAAAAAAA AAAAAAAAA
Predicted gene structure (within gDNA segment 18136 to 15930):
Exon 1 16853 16544 ( 310 n); cDNA 1 307 ( 307 n); score: 0.661
PPA cDNA 418 439
MATCH 21326110- 4714617+ 0.661 310 0.706 C
PGS_21326110-_4714617+ (16853 16544)
Alignment (genomic DNA sequence = upper lines):
AAAAAATATA AGGCCCTGTT TAGTTCCCAC CTAAAAAATT TTCATCCATC ACATTGAATC 16794
| | ||| || |||||| ||||| || |||| || | | || |||| ||||
CATGTAAATA TGGGCCTGTT TAGTTTTCAA ACAAAATTTT TCACGCTGTC ACATCGAATG 60
TTTAGACACA TACATAAAAC ATTAAATGTA GATAAAAA-A -TAATTACAC AGTTTGGTTG 16736
||| |||||| | ||| | ||||||||| || ||||| | ||||||| |||| | |
TTTGGACACA TGCAT--AGT GTTAAATGTA GAAAAAAAAA CCAATTACAT AGTTCGACAG 118
AAAATCGCGA GATGAATTTT TTAAGCCTAG TTAGTCCATG ATTAGCCTTA AGTGCTACAG 16676
|||| |||| ||||||| || |||||| || || ||| | ||| | | | ||| | |
GAAATTGCGA GATGAATCTT TTAAGCTTAA TTGCGCCAGG ATTTG-ATAA TGTGGTGCTA 177
TAACCCACAT GTGCTAATAA TAGATTAATT ATACTTAATA GATTCGTCTT GCAGTTTCCT 16616
|| |||| || | || | |||||||| | ||| ||| |||||||| | ||||| ||
CAATAAACAT TTGTTGATGA CGGATTAATT AGGCTTGATA AATTCGTCTC GAAGTTTTCT 237
GACGAGTTAT GTAATTTGTT TTTTTTATTA GTTTTTAAAA ACCCCTCCCG ACATCCTTCC 16556
| | | | |||||||| | ||| |||||| | | | || | | |||
GGCAGAATCT GTAATTTG-T TTTGTTATTA GACTACGTTT AATACTTTAA ATGTGTGTCC 296
GACATATCCG AT 16544
| ||||||| ||
G-TATATCCG AT 307
********************************************************************************
EST sequence 109 +strand (File: 20553288+)
1 CCTGTTTAGT TCCCCATCCA AAAATTTTTC ATCCATCTCA TCGAATCTTT GGACACATGC
61 ATGGAATATT AAATGTAGAT AAAAAAATGA ACTGATTACG CAGTTTAGTT GAGAATCGCT
121 AGACGAATCT TTTAAGCCTA GTTACTCCAT GATTAGCCTT AAGTGCTACA GTAACCCACA
181 TATGCTAATG ACAGATTAAT TATGCTTAAT AAATTTGTCT TGCAGTTTCC TGACGAGCTA
241 TGTAATTTGT TTTTTTATTA GATTCTAAAA ACCCCTCCCG ACATCTTTCC GACATATCCG
301 ATGTGACACG CAGAAAATTT TCGATCCCAA TCTAAACAGG CCCTGAATAC AGTGA
Predicted gene structure (within gDNA segment 17139 to 15994):
Exon 1 16839 16544 ( 296 n); cDNA 1 302 ( 302 n); score: 0.858
MATCH 21326110- 20553288+ 0.858 296 0.834 C
PGS_21326110-_20553288+ (16839 16544)
Alignment (genomic DNA sequence = upper lines):
CCTGTTTAGT T-CCCACCTA AAAAATTTTC ATCCATCACA TTGAATCTTT AGACACATAC 16781
|||||||||| | |||| | | |||| ||||| ||||||| || | |||||||| ||||||| |
CCTGTTTAGT TCCCCATCCA AAAATTTTTC ATCCATCTCA TCGAATCTTT GGACACATGC 60
ATAAAACATT AAATGTAGAT -AAAAAAT-- A---ATTACA CAGTTTGGTT GAAAATCGCG 16727
|| || ||| |||||||||| ||||||| | ||||| |||||| ||| || ||||||
ATGGAATATT AAATGTAGAT AAAAAAATGA ACTGATTACG CAGTTTAGTT GAGAATCGCT 120
AGATGAATTT TTTAAGCCTA GTTAGTCCAT GATTAGCCTT AAGTGCTACA GTAACCCACA 16667
||| |||| | |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||||
AGACGAATCT TTTAAGCCTA GTTACTCCAT GATTAGCCTT AAGTGCTACA GTAACCCACA 180
TGTGCTAATA ATAGATTAAT TATACTTAAT AGATTCGTCT TGCAGTTTCC TGACGAGTTA 16607
| ||||||| | |||||||| ||| |||||| | ||| |||| |||||||||| ||||||| ||
TATGCTAATG ACAGATTAAT TATGCTTAAT AAATTTGTCT TGCAGTTTCC TGACGAGCTA 240
TGTAATTTGT TTTTTTTATT AGTTTTTAAA AACCCCTCCC GACATCCTTC CGACATATCC 16547
||||||||| |||||||||| || || |||| |||||||||| |||||| ||| ||||||||||
TGTAATTTG- TTTTTTTATT AGATTCTAAA AACCCCTCCC GACATCTTTC CGACATATCC 299
GAT 16544
|||
GAT 302
********************************************************************************
EST sequence 22 -strand (File: 16578696-)
1 TTTTTTTTTT TTTTTTTAAA TATGGACGAA AAAAACCAAT TACACAGTTT GCATGTAAAT
61 TGCGAGACGA ATCTTTTGAG CCTAATTACG TCTTGATTTG ACAATGTGGT GCTACAGTAA
121 ACATTTGCTA ATGACGAATT AATTAGGCTT AATAGATTCG TCTCGCAGTT TACAGGCGAA
181 ATCTGTAATC TGTTTGGTTA TTAGTCTACG TTTAATACTT CAAATGTGTC CGTATACTTC
241 AAAAATTTTA TTTGGGCACA CGAACTAAAC ACAGCCAAAC TCAACAAAAT TATTCAGCAA
301 TGTTATCTCT ACAAGAAATG ATGCAGCATT TGGCAGTGCT AAATTCGGCT TGAATCCCTC
361 CCAAATATGA ACCTCCGAGT CCAGTCGGAT ACCACCAGCA TCCGTGTGCG CCAACTCACT
421 TGTTGCTTGC ATATACAGAG TACCAGAGCC ACTGAGTGCT ATGGCCATGG AAACCCAGTC
481 GCCTGGGAGC TCTGCAGCAG CTTGTCTCCA CCCAAGGTGT GCAAATTGCC AAGATGCTTG
541 TACGGAATGG GCGGAAATTG TGCCGTCTGA TCCTGTTCCT GTCATGCGCA ACGGACTT
Predicted gene structure (within gDNA segment 17243 to 14152):
Exon 1 16762 16582 ( 181 n); cDNA 29 207 ( 179 n); score: 0.746
Intron 1 16581 16478 ( 104 n); Pd: 0.000 (s: 0.76), Pa: 0.593 (s: 0)
Exon 2 16477 16467 ( 11 n); cDNA 208 218 ( 11 n); score: 0.636
Intron 2 16466 16232 ( 235 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.58)
Exon 3 16231 16178 ( 54 n); cDNA 219 270 ( 52 n); score: 0.611
Intron 3 16177 15984 ( 194 n); Pd: 0.741 (s: 0.60), Pa: 0.000 (s: 0)
Exon 4 15983 15969 ( 15 n); cDNA 271 286 ( 16 n); score: 0.600
Intron 4 15968 15223 ( 746 n); Pd: 0.861 (s: 0), Pa: 0.033 (s: 0)
Exon 5 15222 15203 ( 20 n); cDNA 287 304 ( 18 n); score: 0.800
Intron 5 15202 14433 ( 770 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0)
Exon 6 14432 14413 ( 20 n); cDNA 305 324 ( 20 n); score: 0.650
Intron 6 14412 14189 ( 224 n); Pd: 0.000 (s: 0), Pa: 0.569 (s: 0)
Exon 7 14188 14152 ( 37 n); cDNA 325 359 ( 35 n); score: 0.622
PPA cDNA 17 1
MATCH 21326110- 16578696- 0.715 338 0.565 C
PGS_21326110-_16578696- (16762 16582,16477 16467,16231 16178,15983 15969,15222 15203,14432 14413,14188 14152)
Alignment (genomic DNA sequence = upper lines):
ATAAAAAATA ATTACACAGT TTGGTTGAAA ATCGCGAGAT GAATTTTTTA AGCCTAGTTA 16703
| ||||| | |||||||||| ||| || || || |||||| |||| |||| |||||| |||
AAAAAAACCA ATTACACAGT TTGCATGTAA ATTGCGAGAC GAATCTTTTG AGCCTAATTA 88
GTCCATGATT AG-C-CTTAA GTGCTACAGT AACCCACATG TGCTAATAAT AGATTAATTA 16645
| ||||| | | | |||||||||| || |||| ||||||| | ||||||||
CGTCTTGATT TGACAATGTG GTGCTACAGT AA---ACATT TGCTAATGAC GAATTAATTA 145
TACTTAATAG ATTCGTCTTG CAGTTTCCTG ACGAGTTATG TAATTTGTTT TTTTTATTAG 16585
|||||||| |||||||| | |||||| | | ||| | || |||| || || | |||||||
GGCTTAATAG ATTCGTCTCG CAGTTTACAG GCGAAATCTG TAATCTG-TT TGGTTATTAG 204
TTTTTAAAAA CCCCTCCCGA CATCCTTCCG ACATATCCGA TGTGACCTAA AAAATTTTCA 16525
| |
TCT....... .......... .......... .......... .......... .......... 207
TCTTCAATCT AAACATGCCC TAAGTGAAAT GCAATAATGT GTTGTAGAAC TTTTATAGGC 16465
| ||| |||
.......... .......... .......... .......... .......ACG TTTAATAC.. 218
TATCACACAT GTGGTAGGGC GAGACCATCA TTACATTCGA AGAAGAAATA TATTCCGCAA 16405
.......... .......... .......... .......... .......... .......... 218
TCCACAATTG GGATAAAATA GCAAATCATC GAAAAGGGCC TGACCAATAA GAATCAGGTC 16345
.......... .......... .......... .......... .......... .......... 218
AAGGGTTCAT ACAACTGTCA TCAGCTATGC AGAGCCAAAA AAAAAACATA TCATTGGGGT 16285
.......... .......... .......... .......... .......... .......... 218
TTGCTATTAG ATCAATCAAT TGCTTATGCA GTTTCCAATA AAAAAAATGC TTATGCAAAT 16225
| |||||
.......... .......... .......... .......... .......... ...TTCAAAT 225
TTCTCCCATA TACAACTAAA GTTACATGAG CACATTCCTC CTGAAACGTA ATACTGAAAG 16165
| | || || ||| | ||| || || | || | || ||||
GTGT-CCGTA TACTTCAAAA ATTTTATTTG GGCACACGAA CT-AAAC... .......... 270
CATACTTTTG ATTTGAATGG TTGAATCTAC AAGCTATACG GTTTGTTTCC AGAATCTGAT 16105
.......... .......... .......... .......... .......... .......... 270
CGATCTATCA TTTCCACAAA TAACAAAAAC TGGTTCAACT GGGGAGTGGT CGAGCCATCT 16045
.......... .......... .......... .......... .......... .......... 270
GGGAGCACCA GTGCTGCCAG AGGGCAATCT TGCAACCTTT TCTGCAGTAA GTGCATCCCA 15985
.......... .......... .......... .......... .......... .......... 270
GAC-GACAAC CTGAAGAGTG ACGTATCATA GTTAAGCTTG CTGAAATACA AATATATATA 15926
|| | ||| || || |
.ACAGCCAAA CTCAACA... .......... .......... .......... .......... 286
CTGTTCTCAA TTTGGAATTT ACCTCATTGT TTTGTTCATC AACTGATAGA ACAAATTCTT 15866
.......... .......... .......... .......... .......... .......... 286
CGGTTTCATT GAAGACAGCC TGGATAGTAA GAACAGTTAT TATCATATTT ATTGTCTATC 15806
.......... .......... .......... .......... .......... .......... 286
ATAGCAAGGT TAGGTATGTT GTTATCCTAA GCTGCAAGCT CAAACCAGCC TATTTTCAAA 15746
.......... .......... .......... .......... .......... .......... 286
TTAAAGAATT GCAATATTTT GTTTCCTAAA ATTTTGGGTA AAAATAATAT ATATGGCACA 15686
.......... .......... .......... .......... .......... .......... 286
CGAGTAAATT TAAATCAGGA AAAAATAATA ATCTTATAGA AACACAGAGA AACTAACCTG 15626
.......... .......... .......... .......... .......... .......... 286
ACAACGAAAT TGTCTGCGAA TGGCTCCTGC ATATTGCTTC ACAAGTCGTC CAGTGCCAAC 15566
.......... .......... .......... .......... .......... .......... 286
TTCCCATAAC TTGACACAAG AATCTTTCCC ACAAGATAGG ACATACCTGA AAGAACGTAG 15506
.......... .......... .......... .......... .......... .......... 286
TAAACTTCAT AACAGATAAC CAGAATACAG TGTGCAGTTT TATGAAAGAA ATCCATGAAC 15446
.......... .......... .......... .......... .......... .......... 286
TATCTAAGCA TATACTTCGG GTAGTCAAAG TTCACTACAT CAATTTTTTA GATCAATCTT 15386
.......... .......... .......... .......... .......... .......... 286
ATATGCAAGT GCATTCACGC TGCATATAAC CACATAAACA CTAGGCCTTT CAGAAGAAGT 15326
.......... .......... .......... .......... .......... .......... 286
CTAAAAAGTG TTTATAGGCA AGTTAGTTGT TTAGTGGTGA AATAGTAGGG TAAAGGAGAA 15266
.......... .......... .......... .......... .......... .......... 286
AGAGTTATTC GTGTTATAAA GTTACGACAC GTCTGAAACA CAGGAAATTA TCCAGGACAT 15206
|||||| | ||| | ||
.......... .......... .......... .......... ...-AAATTA TTCAGCA-AT 301
GTTATAAATC ATTCAGAATC ACTACAAGAT TCCCACATTC CAAACAGGGT TTGAAGTAGT 15146
|||
GTT....... .......... .......... .......... .......... .......... 304
TACTGTCTTG AATCATACAG CATATGCCTT TCTCTCTGTT CTTCAAACCA AACAATGACT 15086
.......... .......... .......... .......... .......... .......... 304
GGATTTTATC TTGAGGGAAG AGCACCTTAG ACATGCTGGT AGCTCGCTTA CCTCTCATCT 15026
.......... .......... .......... .......... .......... .......... 304
CTGGTGAAAA TTGCGCTAGT AGCTTCTGCA GATCCATGTG CTCCAATAAT AGGTCGAACA 14966
.......... .......... .......... .......... .......... .......... 304
CATTCAGCAG ATACTCCATC CCAAATGCGC AGAGAACCAT CTTTAGAAGC AGTCACATAC 14906
.......... .......... .......... .......... .......... .......... 304
AAGCTCCCAG TACAGGAGTA GCGTACCTGG CAGCAACATC AGTAAGCATG GCTGGCGGAG 14846
.......... .......... .......... .......... .......... .......... 304
AACTTTGATG AGAATATAAC CAATGCAATC TAATGCTTGT GAATCAGAAG GAAAGAGAAA 14786
.......... .......... .......... .......... .......... .......... 304
AGCTACCTGG TTAATGGGAG AACTAGAATC CTGTGCATTT GCTGATAAGT AGCATGTAAA 14726
.......... .......... .......... .......... .......... .......... 304
AGTATTTATA TCATATAAAT GAGCAACTGG GTGATCAGTC CCTGCAAATA ATTTTATCAG 14666
.......... .......... .......... .......... .......... .......... 304
TGTCACTTGC TTCCAAATAT ATGAAAATGA GTTTTTTTAA AAAAAATACA TATTTGAATG 14606
.......... .......... .......... .......... .......... .......... 304
TTAATATTTG ACTATATGTA AGAAGAAAAT TCCATACGAT ATGCTTGCAG TATTTTTCAA 14546
.......... .......... .......... .......... .......... .......... 304
ATGCCCACGA GACAGAAACT GTTGATCCAG GAACGAAATC CAAATTCTTA AGCCCAAATA 14486
.......... .......... .......... .......... .......... .......... 304
TCAAATTGTT TTGGTGAAAT GATTAAATTA CTTTACAGAT AACAACTGAA AACATGTTAA 14426
|| | |
.......... .......... .......... .......... .......... ...ATCTCTA 311
CAACTTATAA TGCATAAAAA TCAGAGCATA TCAAACTGAT ATCAGACATC AAGAATCAGT 14366
||| || | |||
CAAGAAATGA TGC....... .......... .......... .......... .......... 324
TAATCACAGC AGAACTAGAA ATCAAATTTA AATTTAGTGA AAAGATCATA GTACCTGCTA 14306
.......... .......... .......... .......... .......... .......... 324
AAAGGTAATC CCCACAAGGA TGAAAACATA CAGATCTAAC ATTATGAGTA TCCTGCCAAG 14246
.......... .......... .......... .......... .......... .......... 324
CATTAACAAA TGAGCCTGGT TAAATGCAAT GAACACACCA TTTTACATGA TATATAGAGA 14186
||
.......... .......... .......... .......... .......... .......AGC 327
GATTGG-ATT GCTAGAATTT ACAACCTGAA TAACT 14152
|||| | | |||| || || | | |||| | ||
ATTTGGCAGT GCTA-AA-TT -CGGCTTGAA TCCCT 359
********************************************************************************
EST sequence 121 +strand (File: 25805794+)
1 TTTTTTTTTT TTTTTTTTTT TCTTCGATTA ACGGTAATTT CTAGACCTTG GGAGCGAACG
61 TGGTAGCTCC TTTTTCTATT ACTTTATTAA GGTAATAAAT TGATACCTAT GAGTATTCAA
121 GTGTCAAGAA CATTGGCTGA TGGAATGATT GATATAGTCA TTTGGTCACC ATTATCAAAC
181 AGTAAAGCAA TGTAAGGTGT AAGCATAACT CACTGCACTA ACTGAAGGCC TATTTAGATC
241 TCACCTCGAA ATTTTACACC CTATCACATC GAGCGTTTGA ACACATGCAT AAAGTATTAA
301 ATATAGGCTA AAACTAATTG CACATATTGC GACTATTTTA CGAGACGAAT TTTTTAAGCC
361 TAATTGCTCC ATGATTTGAT AATGTGGTGC TACAGTAAAC ATTTGCTAAT GATGGATTAA
421 TTGGGCTTAA TAAATTTGTC TCACGGTTTA CTTACGGATT CTGTAATTAT TTTTTTATTA
481 GGGCCCGAAC ACCCACATGC GATACCCTAT AATATCCGAT GTGACACAGT AAAACTTTAC
541 ACCCCCCCTT GTCTCGTCCT CTGGCTACCT A
Predicted gene structure (within gDNA segment 18861 to 16004):
Exon 1 18861 18858 ( 4 n); cDNA 220 223 ( 4 n); score: 0.750
Intron 1 18857 16846 (2012 n); Pd: 0.904 (s: 0), Pa: 0.000 (s: 0.73)
Exon 2 16845 16586 ( 260 n); cDNA 224 480 ( 257 n); score: 0.715
PPA cDNA 24 1
MATCH 21326110- 25805794+ 0.715 264 0.462 C
PGS_21326110-_25805794+ (18861 18858,16845 16586)
Alignment (genomic DNA sequence = upper lines):
ATCTGTAAGT TGAGAATCGC ATTTGCATCA AGCCCATGTT AAATGACTCA AGAAGTAGAG 18802
| ||
AACT...... .......... .......... .......... .......... .......... 223
AAATCTCCCA ATGATAGTTA TTTCTTAATG TTAATAAAAT GGATACTATC AGGCTATTTG 18742
.......... .......... .......... .......... .......... .......... 223
ATTGTACCCA TAGGTAGTCC TCTCCTTGGT AGCTTCCAAA GTAGCGGACA ACATTTGGAT 18682
.......... .......... .......... .......... .......... .......... 223
GGCTACACTG CTGCAGCATC TCAATTTCTC CCCGTATGTC TTCATATCCT TCTTCCTGAA 18622
.......... .......... .......... .......... .......... .......... 223
AACCAAAGAT ACATACTTAT ATTTTGGAAA AATGCAACGA CTCGGAAAAC AGACAGCAAC 18562
.......... .......... .......... .......... .......... .......... 223
CACATTTATG AGATTCTCTC ACAATTGAGC CCATGCAAAC AAAATGCTCA CAACAAAAGC 18502
.......... .......... .......... .......... .......... .......... 223
AATATGGTTG CCAAATATGA AATATGTCTC GGGTGGCCTT TCAGAATATT CACAGAACTT 18442
.......... .......... .......... .......... .......... .......... 223
TGTAATAGAA AATTAGAAAC TAACCCCTTC TGTTAGTGAG ATAATCTTGA CAGCCACAAG 18382
.......... .......... .......... .......... .......... .......... 223
CTCCTGCGTT CTGAGATCCC TTGCTTTGTA CACTGCACCA TATGAGCCTT TCCCTGCATT 18322
.......... .......... .......... .......... .......... .......... 223
CCCAATTGAA TTTTGCATTT CGCAAAACAG CTCAAAGCTT CAGCCATTCT ACAAGTAGAC 18262
.......... .......... .......... .......... .......... .......... 223
ATACAGAACT AATGAAACAA TAATTCCAGA GCAAGAGGCG CACCAAGCTC ATGGAGCAGC 18202
.......... .......... .......... .......... .......... .......... 223
TCGTACTTGG TGGAAGGATC CTCTCTGGTA ACACTGTCTG GCGCCGAGCT CACTGATGGC 18142
.......... .......... .......... .......... .......... .......... 223
TTCCGCCTTG AATGCTGCTG CTGTTGTTGC TGCATCAGAG GCGACGGTTG CCGGAGCTCC 18082
.......... .......... .......... .......... .......... .......... 223
TCTGTCTGCT CCACCGCTGG ACTCCAGAAA GAGGACCCGA AACCCCCGCC GCCGCCAGAA 18022
.......... .......... .......... .......... .......... .......... 223
GCAGATTCAT AGGAACTGGA ACCCCCGCTG GTGTGGCGAA TGAAGGTGCC AGAGAACGAC 17962
.......... .......... .......... .......... .......... .......... 223
CCGCGGGGGC TCGACGGGCT CCCTGGTCGG CGGATGAATG TGCCGGAGAC CGAGTCCCGG 17902
.......... .......... .......... .......... .......... .......... 223
GGGCTCGACG GGGTGCTAGT CCGGCGGATG AATGTGCCAG AGACGGATTC GTGAGGGCTG 17842
.......... .......... .......... .......... .......... .......... 223
GACGAGCCCC CGGAGCGACG GATGAATGTG CCTGAGGCGG ACCCTCGAGG GCTGGAGGAG 17782
.......... .......... .......... .......... .......... .......... 223
GTCCCCCCCG AGCGTGCGGT GGAGTGGACG ACGAAGGTAG AGTATGGGTC GTCATCGGTA 17722
.......... .......... .......... .......... .......... .......... 223
GCGCGGGGGC TGGAGCGCCG CAGATCCAGG AACGGAGATC GAGCGGAGGC CGGGGCGCCG 17662
.......... .......... .......... .......... .......... .......... 223
CTCTTGAAGA CCACCGTAGC GGAGAGGGAA GCATCGTCGG GGTCGGAGGA GTAGGCGTCC 17602
.......... .......... .......... .......... .......... .......... 223
TCGTCTTCGT CAAAGGAGGG GCCGCCGAAG TCCTTGGGGA GCCGCTGGAG AAGCGGAGGC 17542
.......... .......... .......... .......... .......... .......... 223
AGCGAGGAGG GGTCTTCCTC CTCGTCTTCC TCCGCCCGCG TGGACGGGCC CCTGCCGCGC 17482
.......... .......... .......... .......... .......... .......... 223
CTGCTGCCGC GGGCGTCGTC CTCGTCGTCA TCGCCGTGGA CGACGAAGGT TGAGTAGACG 17422
.......... .......... .......... .......... .......... .......... 223
TCGTTTCTCT TGGGACGCGA CCACGGCGAG CGCGGGGAGA AAGCCATGGC GTGCCACGCG 17362
.......... .......... .......... .......... .......... .......... 223
AGGTGGGAGG AGACGGTGAA GGTGCTCGTC GGGAATGGCA AATGGGGAAA ATTGTTTAGT 17302
.......... .......... .......... .......... .......... .......... 223
TGGAGCCAGT TCACTCGAAT CTGGCAAATA TGGGTCGGGC TCGGATGGGC CATCCCATTC 17242
.......... .......... .......... .......... .......... .......... 223
TAGGCCCACG TGACATAGAG AATCCGGTCA AATTCTTCCT TCCCGCAGTC CCGCTAGGCC 17182
.......... .......... .......... .......... .......... .......... 223
CACACGACCA CACCCAGTCA CCCGCAGCCA CAGGCCGCAG AGAGCTTCCT CGAAAGGAGC 17122
.......... .......... .......... .......... .......... .......... 223
TTCTCTTTTT TCTCCACTCA CCCCAAAAAC CAAAAACTTT TCAAAATTTC TCAACACATC 17062
.......... .......... .......... .......... .......... .......... 223
AAATATTACG ACACATGCAT GAAGCATTAA ATATATACAA AAATAAAAAC TAATTGCACA 17002
.......... .......... .......... .......... .......... .......... 223
GTTTACCTAT AAATCGCGAG ATAAATCTTT TAAACCTAGT TACTCTATGA TTAGACAATA 16942
.......... .......... .......... .......... .......... .......... 223
TTTGTCAAAT AAAAACGAAA GTGCTACAGT CTCAAAAACC AAAAAGTTTT CGAAACTAAA 16882
.......... .......... .......... .......... .......... .......... 223
CAAGGCCTGA CACTTGCACA TCTTTTTTAA AAAATATAAG GCCCTGTTTA GTTCCCACCT 16822
||| | ||| |||| | || |||||
.......... .......... .......... ......GAAG G-CCTATTTA GATCTCACCT 246
AAAAAATTTT CATCC-ATCA CATTGAATCT TTAGACACAT ACATAAAACA TTAAATGTAG 16763
||| ||| || || |||| ||| || | || |||||| |||||| | |||||| |||
CGAAATTTTA CACCCTATCA CATCGAGCGT TTGAACACAT GCATAAAGTA TTAAATATAG 306
ATAAAAAATA ATTACACAGT TTGGTTGAAA ATCGCGAGAT GAATTTTTTA AGCCTAGTTA 16703
|||| || ||| |||| ||| | | ||||| |||||||||| |||||| ||
GCTAAAACTA ATTGCACATA TTGCGACTAT TTTACGAGAC GAATTTTTTA AGCCTAATTG 366
GTCCATGA-T T-AGCCTTAA GTGCTACAGT AACCCACATG TGCTAATAAT AGATTAATTA 16645
||||||| | | | | |||||||||| || |||| ||||||| || ||||||||
CTCCATGATT TGATAATGTG GTGCTACAGT AA---ACATT TGCTAATGAT GGATTAATTG 423
TACTTAATAG ATTCGTCTTG CAGTTTCCTG ACGAGTTATG TAATTTGTTT TTTTTATTA 16586
||||||| ||| |||| | |||| || ||| || || ||| || || |||||||||
GGCTTAATAA ATTTGTCTCA CGGTTTACTT ACGGATTCTG TAA-TT-ATT TTTTTATTA 480
********************************************************************************
EST sequence 114 +strand (File: 18388584+)
1 CCCGGTGATG TGAACGCTGG NCATCCGGAG GACCGCGAGT TGGAGGAGCC GAGGTGTTCG
61 ACCCCGACAC GGTTCGAGGC GAACGGTGGA GTTCACGCGG CACTTCGAGC TCCTGCCGTT
121 CGGTCGGGCG GCGGATCTGC CCCGGCATCG CCATGCCGCC GCCAACGTGG AGTTCACGCT
181 GGCCAACCTG CTGCACTGCT TCGACTGGGC GCTGCCGGTG GGGATGGCGC CGGAGGAGCT
241 GAGCATGGAG GAGTCCGGCG GCCTCGGGCT CCACAGGAAG GCGCCCCTCG TGCTCGTGCC
301 CNCTAGATAC ATACAACTAT AGGAGTACCA ATTAAATGGA ATTTAGCTAG TAGCCAAGCC
361 GCGACTTCGG CCTTGTTTAG TTCCTAAATT ATTTTTTTTC CNAAAACGTC ACCTCCNATC
421 TTTAGATATA TATATAAAAT ATTANACTAT ATATAAAATA AAAAATTAAT TGCACAGTTT
481 GTATGAAAAT CACGAGACGA ATCTTTTGAA CCTAACTAGT CCATGATTAG CCATAAGTGT
541 TACAGTAACC CATATGTACT AATGATGGAT TAATTATGCT TAATAATTTC ATCTCGCGGT
601 TCTTCAGGCG AGTTATGAAA TTAGTTTTCA AAAAAAAAAA A
Predicted gene structure (within gDNA segment 19641 to 15919):
Exon 1 17066 17001 ( 66 n); cDNA 411 477 ( 67 n); score: 0.697
Intron 1 17000 16744 ( 257 n); Pd: 0.000 (s: 0.73), Pa: 0.088 (s: 0.82)
Exon 2 16743 16597 ( 147 n); cDNA 478 625 ( 148 n); score: 0.810
Intron 2 16596 16254 ( 343 n); Pd: 0.000 (s: 0.73), Pa: 0.071 (s: 0)
Exon 3 16253 16238 ( 16 n); cDNA 626 641 ( 16 n); score: 0.875
MATCH 21326110- 18388584+ 0.775 229 0.357 C
PGS_21326110-_18388584+ (17066 17001,16743 16597,16253 16238)
Alignment (genomic DNA sequence = upper lines):
ACATCAAATA TTACGACACA TGCATGAAGC ATTAAA-TAT ATACAAAAAT AAAAACTAAT 17008
|| || || || || | | | || || |||| | ||| ||| |||| ||||| ||||
ACCTCCNATC TTTAGATATA TATATAAAAT ATTANACTAT ATATAAAATA AAAAATTAAT 470
TGCACAGTTT ACCTATAAAT CGCGAGATAA ATCTTTTAAA CCTAGTTACT CTATGATTAG 16948
|||||||
TGCACAG... .......... .......... .......... .......... .......... 477
ACAATATTTG TCAAATAAAA ACGAAAGTGC TACAGTCTCA AAAACCAAAA AGTTTTCGAA 16888
.......... .......... .......... .......... .......... .......... 477
ACTAAACAAG GCCTGACACT TGCACATCTT TTTTAAAAAA TATAAGGCCC TGTTTAGTTC 16828
.......... .......... .......... .......... .......... .......... 477
CCACCTAAAA AATTTTCATC CATCACATTG AATCTTTAGA CACATACATA AAACATTAAA 16768
.......... .......... .......... .......... .......... .......... 477
TGTAGATAAA AAATAATTAC ACAGTTTGGT TGAAAATCGC GAGATGAATT TTTTAAGCCT 16708
|||| |||||||| | |||| |||| |||| | |||
.......... .......... ....TTTGTA TGAAAATCAC GAGACGAATC TTTTGAACCT 513
AGTTAGTCCA TGATTAGCCT TAAGTGCTAC AGTAACCCAC ATGTGCTAAT AATAGATTAA 16648
| ||||||| ||||||||| |||||| ||| ||||||||| |||| ||||| || ||||||
AACTAGTCCA TGATTAGCCA TAAGTGTTAC AGTAACCCAT ATGTACTAAT GATGGATTAA 573
TTATACTTAA TAGATTCGTC TTGCAGTT-T CCTGACGAGT TATGTAATTT GTTTTTTTTA 16589
|||| ||||| || ||| || | || ||| | | | ||||| |||| |||| ||
TTATGCTTAA TAATTTCATC TCGCGGTTCT TCAGGCGAGT TATGAAATTA GT........ 625
TTAGTTTTTA AAAACCCCTC CCGACATCCT TCCGACATAT CCGATGTGAC CTAAAAAATT 16529
.......... .......... .......... .......... .......... .......... 625
TTCATCTTCA ATCTAAACAT GCCCTAAGTG AAATGCAATA ATGTGTTGTA GAACTTTTAT 16469
.......... .......... .......... .......... .......... .......... 625
AGGCTATCAC ACATGTGGTA GGGCGAGACC ATCATTACAT TCGAAGAAGA AATATATTCC 16409
.......... .......... .......... .......... .......... .......... 625
GCAATCCACA ATTGGGATAA AATAGCAAAT CATCGAAAAG GGCCTGACCA ATAAGAATCA 16349
.......... .......... .......... .......... .......... .......... 625
GGTCAAGGGT TCATACAACT GTCATCAGCT ATGCAGAGCC AAAAAAAAAA CATATCATTG 16289
.......... .......... .......... .......... .......... .......... 625
GGGTTTGCTA TTAGATCAAT CAATTGCTTA TGCAGTTTCC AATAAAAAAA A 16238
|||| || ||||||| |
.......... .......... .......... .....TTTCA AAAAAAAAAA A 641
********************************************************************************
EST sequence 41 -strand (File: 6674009-)
1 GGCACAGAAT AGTTCAATAA TTTGCCTTCA TCTCAAGACT CCAGGCTTAC GAACATCCCA
61 CTTACATCTC CATCACGGGT ACATGCACAC ACAGCGCCTC CGCCCAATTA CAGTTTGGAT
121 CTTATTAAAT TATTATATAG ACTCATACTA ACCTGATTAC TACTAGTGAT TATGTAGAGC
181 CTAGACTAGA GGCGCCTTGT TGTTCAAAGG AAATTATTAT TCTTAGGCCC TGTTTAGTTC
241 CCCACCAAAA ATTTTTTCAT CCATCCCATC GAATCTTTGG ACACATGCAT GGAACATTAA
301 ATGTAGATAA AAAAATAAAC TAATTACACA GTTTAGTTGA GAATCGCGAG ACGAATCTTT
361 TAAGCCTAGT TACTCCATGA TTAGCCTTAA GTGCTACAGT AACCCACATA TGCTAATGAC
421 AGATTAATTA TGCTTAATAA ATTTGTCTTG CA
Predicted gene structure (within gDNA segment 18268 to 16151):
Exon 1 16843 16623 ( 221 n); cDNA 225 452 ( 228 n); score: 0.846
MATCH 21326110- 6674009- 0.846 221 0.489 C
PGS_21326110-_6674009- (16843 16623)
Alignment (genomic DNA sequence = upper lines):
AGGCCCTGTT TAGTTCC-CA CCTAAAAAAT TTTCATCCAT CACATTGAAT CTTTAGACAC 16785
|||||||||| ||||||| || || |||| | |||||||||| | ||| |||| |||| |||||
AGGCCCTGTT TAGTTCCCCA CCAAAAATTT TTTCATCCAT CCCATCGAAT CTTTGGACAC 284
ATACATAAAA CATTAAATGT AGAT----AA A-AAA-TAAT TACACAGTTT GGTTGAAAAT 16731
|| ||| || |||||||||| |||| || | ||| |||| |||||||||| ||||| |||
ATGCATGGAA CATTAAATGT AGATAAAAAA ATAAACTAAT TACACAGTTT AGTTGAGAAT 344
CGCGAGATGA ATTTTTTAAG CCTAGTTAGT CCATGATTAG CCTTAAGTGC TACAGTAACC 16671
||||||| || || ||||||| |||||||| | |||||||||| |||||||||| ||||||||||
CGCGAGACGA ATCTTTTAAG CCTAGTTACT CCATGATTAG CCTTAAGTGC TACAGTAACC 404
CACATGTGCT AATAATAGAT TAATTATACT TAATAGATTC GTCTTGCA 16623
||||| |||| ||| | |||| ||||||| || ||||| ||| ||||||||
CACATATGCT AATGACAGAT TAATTATGCT TAATAAATTT GTCTTGCA 452
********************************************************************************
EST sequence 131 +strand (File: 12775389+)
1 GCTGTCTGGA CTTAGGCTTT GTTTACTTCC ACCCCAAAAC CTAAATTTTT TCAAGATTCC
61 CAGTCACATC GAATCTTTAG ACGCATACAT GGAGTATTAA ATATAGATGA AAATAAAAAC
121 TAATTGCACA GTTTAGTCGA AATGTACGAG ACAAATCTTT TGAGCCTAGT TAGTCCATAG
181 TTGGACAATA ATTACCATAA ACAAACGAAA GTGCTACAGT GTCACGAAAA TTTTCTCTTC
241 ACCAACTAAA CACGGCCTTA GCTTGTCAGT TGTTAGTGTA AATTTACGTC TACCTTTAGT
301 TGAGAGCTCT TATGCAAATG GTTGGATGGT AAAAGAAATG TCGTCACACA GCATTGTTGA
361 TTAGCTTACA GATTTCTGGG GAGCTGACAC CTGGTGTTCC TTTCTTATCT GGTAATGATA
421 AATTGATAAC TATACAACAT ACAGTTCACT TGTTTTTTTT GGGTTTCTTT GTCTTTTCTT
481 TCCTTATTAT CTTCATACTG GAATCCACAT TCCTACTAAC TAATAATTGA ACTTCAAGGT
541 TTCATGGCAC AAGTCTTCTA AAATTGCAGA TCTCCTAGAA GGGATAGTCA ACTGAAATGC
601 CCTAGTATTT TAAGTCTGAA CTTTTGCAAA CAAATT
Predicted gene structure (within gDNA segment 17867 to 14290):
Exon 1 17100 16825 ( 276 n); cDNA 32 305 ( 274 n); score: 0.703
Intron 1 16824 16467 ( 358 n); Pd: 0.000 (s: 0.54), Pa: 0.878 (s: 0)
Exon 2 16466 16447 ( 20 n); cDNA 306 325 ( 20 n); score: 0.650
Intron 2 16446 14799 (1648 n); Pd: 0.000 (s: 0), Pa: 0.704 (s: 0)
Exon 3 14798 14785 ( 14 n); cDNA 326 339 ( 14 n); score: 0.714
MATCH 21326110- 12775389+ 0.703 310 0.487 C
PGS_21326110-_12775389+ (17100 16825,16466 16447,14798 14785)
Alignment (genomic DNA sequence = upper lines):
CCCAAAAACC AAAAACTTTT CAAAATTTCT CAACACATCA AATATTACGA CACATGCATG 17041
||| |||||| ||| |||| ||| ||| | |||||| ||| || || | ||| ||||
CCCCAAAACC TAAATTTTTT CAAGATTCCC AGTCACATCG AATCTTTAGA CGCATACATG 91
AAGCATTAAA TATATACAAA AATAAAAACT AATTGCACAG TTTACCTATA AATCG-CGAG 16982
|| |||||| |||| | || |||||||||| |||||||||| |||| | | ||| ||||
GAGTATTAAA TATAGATGAA AATAAAAACT AATTGCACAG TTTA-GTCGA AATGTACGAG 150
ATAAATCTTT TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA 16922
| |||||||| | | |||||| || || || || ||||||| || || | | ||||||||
ACAAATCTTT TGAGCCTAGT TAGTCCATAG TTGGACAATA ATTACCATAA ACAAACGAAA 210
GTGCTACAGT CTCAAAAACC AAAAAGTTTT C-GAAACTAA ACAAGGCCTG ACACTTGCAC 16863
|||||||||| ||| || | | || | |||||| ||| ||||| | |||| |
GTGCTACAGT GTCACGAA-A ATTTTCTCTT CACCAACTAA ACACGGCCTT A-GCTTG-TC 267
ATCTTTTTTA AAAAATATAA GGCCCTGTTT AGTTCCCACC TAAAAAATTT TCATCCATCA 16803
| | || |||| || | | ||| |||| |
AGTTGTTAGT GTAAATTTAC GTCTACCTTT AGTTGAGA.. .......... .......... 305
CATTGAATCT TTAGACACAT ACATAAAACA TTAAATGTAG ATAAAAAATA ATTACACAGT 16743
.......... .......... .......... .......... .......... .......... 305
TTGGTTGAAA ATCGCGAGAT GAATTTTTTA AGCCTAGTTA GTCCATGATT AGCCTTAAGT 16683
.......... .......... .......... .......... .......... .......... 305
GCTACAGTAA CCCACATGTG CTAATAATAG ATTAATTATA CTTAATAGAT TCGTCTTGCA 16623
.......... .......... .......... .......... .......... .......... 305
GTTTCCTGAC GAGTTATGTA ATTTGTTTTT TTTATTAGTT TTTAAAAACC CCTCCCGACA 16563
.......... .......... .......... .......... .......... .......... 305
TCCTTCCGAC ATATCCGATG TGACCTAAAA AATTTTCATC TTCAATCTAA ACATGCCCTA 16503
.......... .......... .......... .......... .......... .......... 305
AGTGAAATGC AATAATGTGT TGTAGAACTT TTATAGGCTA TCACACATGT GGTAGGGCGA 16443
||| | | || | ||| ||
.......... .......... .......... ......GCTC TTATGCAAAT GGTTGG.... 325
GACCATCATT ACATTCGAAG AAGAAATATA TTCCGCAATC CACAATTGGG ATAAAATAGC 16383
.......... .......... .......... .......... .......... .......... 325
AAATCATCGA AAAGGGCCTG ACCAATAAGA ATCAGGTCAA GGGTTCATAC AACTGTCATC 16323
.......... .......... .......... .......... .......... .......... 325
AGCTATGCAG AGCCAAAAAA AAAACATATC ATTGGGGTTT GCTATTAGAT CAATCAATTG 16263
.......... .......... .......... .......... .......... .......... 325
CTTATGCAGT TTCCAATAAA AAAAATGCTT ATGCAAATTT CTCCCATATA CAACTAAAGT 16203
.......... .......... .......... .......... .......... .......... 325
TACATGAGCA CATTCCTCCT GAAACGTAAT ACTGAAAGCA TACTTTTGAT TTGAATGGTT 16143
.......... .......... .......... .......... .......... .......... 325
GAATCTACAA GCTATACGGT TTGTTTCCAG AATCTGATCG ATCTATCATT TCCACAAATA 16083
.......... .......... .......... .......... .......... .......... 325
ACAAAAACTG GTTCAACTGG GGAGTGGTCG AGCCATCTGG GAGCACCAGT GCTGCCAGAG 16023
.......... .......... .......... .......... .......... .......... 325
GGCAATCTTG CAACCTTTTC TGCAGTAAGT GCATCCCAGA CGACAACCTG AAGAGTGACG 15963
.......... .......... .......... .......... .......... .......... 325
TATCATAGTT AAGCTTGCTG AAATACAAAT ATATATACTG TTCTCAATTT GGAATTTACC 15903
.......... .......... .......... .......... .......... .......... 325
TCATTGTTTT GTTCATCAAC TGATAGAACA AATTCTTCGG TTTCATTGAA GACAGCCTGG 15843
.......... .......... .......... .......... .......... .......... 325
ATAGTAAGAA CAGTTATTAT CATATTTATT GTCTATCATA GCAAGGTTAG GTATGTTGTT 15783
.......... .......... .......... .......... .......... .......... 325
ATCCTAAGCT GCAAGCTCAA ACCAGCCTAT TTTCAAATTA AAGAATTGCA ATATTTTGTT 15723
.......... .......... .......... .......... .......... .......... 325
TCCTAAAATT TTGGGTAAAA ATAATATATA TGGCACACGA GTAAATTTAA ATCAGGAAAA 15663
.......... .......... .......... .......... .......... .......... 325
AATAATAATC TTATAGAAAC ACAGAGAAAC TAACCTGACA ACGAAATTGT CTGCGAATGG 15603
.......... .......... .......... .......... .......... .......... 325
CTCCTGCATA TTGCTTCACA AGTCGTCCAG TGCCAACTTC CCATAACTTG ACACAAGAAT 15543
.......... .......... .......... .......... .......... .......... 325
CTTTCCCACA AGATAGGACA TACCTGAAAG AACGTAGTAA ACTTCATAAC AGATAACCAG 15483
.......... .......... .......... .......... .......... .......... 325
AATACAGTGT GCAGTTTTAT GAAAGAAATC CATGAACTAT CTAAGCATAT ACTTCGGGTA 15423
.......... .......... .......... .......... .......... .......... 325
GTCAAAGTTC ACTACATCAA TTTTTTAGAT CAATCTTATA TGCAAGTGCA TTCACGCTGC 15363
.......... .......... .......... .......... .......... .......... 325
ATATAACCAC ATAAACACTA GGCCTTTCAG AAGAAGTCTA AAAAGTGTTT ATAGGCAAGT 15303
.......... .......... .......... .......... .......... .......... 325
TAGTTGTTTA GTGGTGAAAT AGTAGGGTAA AGGAGAAAGA GTTATTCGTG TTATAAAGTT 15243
.......... .......... .......... .......... .......... .......... 325
ACGACACGTC TGAAACACAG GAAATTATCC AGGACATGTT ATAAATCATT CAGAATCACT 15183
.......... .......... .......... .......... .......... .......... 325
ACAAGATTCC CACATTCCAA ACAGGGTTTG AAGTAGTTAC TGTCTTGAAT CATACAGCAT 15123
.......... .......... .......... .......... .......... .......... 325
ATGCCTTTCT CTCTGTTCTT CAAACCAAAC AATGACTGGA TTTTATCTTG AGGGAAGAGC 15063
.......... .......... .......... .......... .......... .......... 325
ACCTTAGACA TGCTGGTAGC TCGCTTACCT CTCATCTCTG GTGAAAATTG CGCTAGTAGC 15003
.......... .......... .......... .......... .......... .......... 325
TTCTGCAGAT CCATGTGCTC CAATAATAGG TCGAACACAT TCAGCAGATA CTCCATCCCA 14943
.......... .......... .......... .......... .......... .......... 325
AATGCGCAGA GAACCATCTT TAGAAGCAGT CACATACAAG CTCCCAGTAC AGGAGTAGCG 14883
.......... .......... .......... .......... .......... .......... 325
TACCTGGCAG CAACATCAGT AAGCATGGCT GGCGGAGAAC TTTGATGAGA ATATAACCAA 14823
.......... .......... .......... .......... .......... .......... 325
TGCAATCTAA TGCTTGTGAA TCAGAAGGAA AGAGAAAA 14785
| || | | |||||
.......... .......... ....ATGGTA AAAGAAAT 339
********************************************************************************
EST sequence 130 +strand (File: 7219249+)
1 GCATTAAATA TAGACGAAAA CAAAAACTAA TCATACAGTT TGACTGTAAA TCACGAGACG
61 AATCTTTTGA CTCTAGTTAG TCTATAATTG GATAATATTT ACCACAAACA AACGAAAGTG
121 CTACAGTTGC GAAAACTTTT CAGTTTTCGG AACTAAACAA GGCCTGATTC TGCCTTGTTC
181 CTTTGGCCAA TGCTCACTGT TTATTTATAA TTTGTGCAGA TTCTTTCAAG GCGATCAACG
241 ATGAAGGCAT GCCCATGTAC CAGAGGCCCT TCATGAAGGG CAAGCTGTAC ATCCACTTCT
301 CGGTGGATTT CCCGGACTCG TTGAGCCTGG AGCAGTGCAA GGCGCTGGAG GCTGTGCTCC
361 CACCCAAGCC GGTGTCGCAG TACACTGACA TGGAGCTGGA CGAGTGCGAG GAGACGATGC
421 CGTATGACGT GAACATCGAG GAGGAGATGC GGAGGCGGCA GCAGCAGCAC CAGGAGGCAT
481 ACGACGAGGA CGAGGATATG CCGGGCGGTG CGCAGAGGGT GCAGTGCGCC CAGCAGTAGT
541 TGCCTGCTAT CAGTAGTAGC AGTGATAATG TTTGACGGTG GCGGCAAATT TGTTGTTTCG
601 CATTGTGCGA CTACTGTTGG GTCAAGTTTT CCCTCGCATT TAATGTCACA ACACTTCGGT
661 TACAAAAATG CAGTATTCAT CAATCCGTTA GC
Predicted gene structure (within gDNA segment 17338 to 13942):
Exon 1 17038 16830 ( 209 n); cDNA 1 205 ( 205 n); score: 0.746
Intron 1 16829 15877 ( 953 n); Pd: 0.000 (s: 0.60), Pa: 0.884 (s: 0)
Exon 2 15876 15840 ( 37 n); cDNA 206 243 ( 38 n); score: 0.541
MATCH 21326110- 7219249+ 0.746 246 0.355 C
PGS_21326110-_7219249+ (17038 16830,15876 15840)
Alignment (genomic DNA sequence = upper lines):
GCATTAAATA TATACAAAAA TAAAAACTAA TTGCACAGTT TACCTATAAA TCGCGAGATA 16979
|||||||||| || || |||| ||||||||| | |||||| | || |||| || |||||
GCATTAAATA TAGACGAAAA CAAAAACTAA TCATACAGTT TGACTGTAAA TCACGAGACG 60
AATCTTTTAA ACCTAGTTAC TCTATGATTA GACAATATTT GTCAAATAAA AACGAAAGTG 16919
|||||||| | ||||||| ||||| ||| || ||||||| || | | | ||||||||||
AATCTTTTGA CTCTAGTTAG TCTATAATTG GATAATATTT ACCACAAACA AACGAAAGTG 120
CTACAGTCTC AAAAACCAAA AAGTTTTCGA AACTAAACAA GGCCTGACAC TTGCACATCT 16859
||||||| | ||||| |||||||| |||||||||| ||||||| | ||| | | |
CTACAGTTGC GAAAACTTTT CAGTTTTCGG AACTAAACAA GGCCTGATTC -TGC-CTTGT 178
TTTTTAAAAA ATATAAGGCC CTGTTTAGTT CCCACCTAAA AAATTTTCAT CCATCACATT 16799
| || | || | ||||||| |
TCCTTTGGCC A-AT-GCTCA CTGTTTATT. .......... .......... .......... 205
GAATCTTTAG ACACATACAT AAAACATTAA ATGTAGATAA AAAATAATTA CACAGTTTGG 16739
.......... .......... .......... .......... .......... .......... 205
TTGAAAATCG CGAGATGAAT TTTTTAAGCC TAGTTAGTCC ATGATTAGCC TTAAGTGCTA 16679
.......... .......... .......... .......... .......... .......... 205
CAGTAACCCA CATGTGCTAA TAATAGATTA ATTATACTTA ATAGATTCGT CTTGCAGTTT 16619
.......... .......... .......... .......... .......... .......... 205
CCTGACGAGT TATGTAATTT GTTTTTTTTA TTAGTTTTTA AAAACCCCTC CCGACATCCT 16559
.......... .......... .......... .......... .......... .......... 205
TCCGACATAT CCGATGTGAC CTAAAAAATT TTCATCTTCA ATCTAAACAT GCCCTAAGTG 16499
.......... .......... .......... .......... .......... .......... 205
AAATGCAATA ATGTGTTGTA GAACTTTTAT AGGCTATCAC ACATGTGGTA GGGCGAGACC 16439
.......... .......... .......... .......... .......... .......... 205
ATCATTACAT TCGAAGAAGA AATATATTCC GCAATCCACA ATTGGGATAA AATAGCAAAT 16379
.......... .......... .......... .......... .......... .......... 205
CATCGAAAAG GGCCTGACCA ATAAGAATCA GGTCAAGGGT TCATACAACT GTCATCAGCT 16319
.......... .......... .......... .......... .......... .......... 205
ATGCAGAGCC AAAAAAAAAA CATATCATTG GGGTTTGCTA TTAGATCAAT CAATTGCTTA 16259
.......... .......... .......... .......... .......... .......... 205
TGCAGTTTCC AATAAAAAAA ATGCTTATGC AAATTTCTCC CATATACAAC TAAAGTTACA 16199
.......... .......... .......... .......... .......... .......... 205
TGAGCACATT CCTCCTGAAA CGTAATACTG AAAGCATACT TTTGATTTGA ATGGTTGAAT 16139
.......... .......... .......... .......... .......... .......... 205
CTACAAGCTA TACGGTTTGT TTCCAGAATC TGATCGATCT ATCATTTCCA CAAATAACAA 16079
.......... .......... .......... .......... .......... .......... 205
AAACTGGTTC AACTGGGGAG TGGTCGAGCC ATCTGGGAGC ACCAGTGCTG CCAGAGGGCA 16019
.......... .......... .......... .......... .......... .......... 205
ATCTTGCAAC CTTTTCTGCA GTAAGTGCAT CCCAGACGAC AACCTGAAGA GTGACGTATC 15959
.......... .......... .......... .......... .......... .......... 205
ATAGTTAAGC TTGCTGAAAT ACAAATATAT ATACTGTTCT CAATTTGGAA TTTACCTCAT 15899
.......... .......... .......... .......... .......... .......... 205
TGTTTTGTTC ATCAACTGAT AGAACAAATT CTTCGGTTTC ATTGAAGAC- AGCCTGGATA 15840
| || || | | | ||| || ||| | | | |||
.......... .......... ..TATAATTT GTGCAGATTC TTTCAAGGCG ATCAACGATG 243
********************************************************************************
EST sequence 87 -strand (File: 11678487-)
1 TGGGAAATTT AGCAAGTTGA GATAAGGAGT TGTTGGAGGA GGATTTTTAT GCTTNTAGCA
61 AATTTGGTAG GATAGCATGT TGAAATACCA AGTTGTTGGA GATGCTCTAA GGCATTGTTT
121 AGTTCCCCAG AAAATTTTGC AAAATTTTTC AGATTCTCTG TCACATCAAA TCTTTAGACG
181 CATGCATGAA GTATTAAATA TATATGAAAA TAAAAACTAA TTGCACAATT TGGTCGGAAT
241 TGACGAGACG AATCTTTTGA GTCTAATTAG TATATGATTG GATAATATTT GTCAAATACA
301 AATGAAAGTG GTACTATTGT TATTTTGTAA AATTTTTTGA AACTAAACAA GGCCTTAACT
361 TGCCTGGCCC CAAAAAATAT AACAGAGGAT CTTATTAAGC ACCTCAGACC AGTAAAAAAA
421 CATGTGTTGG CTGCTTTCAA TTAGTAGAAA TATCATATTA TTGGATTCAA TTTTAAACAG
481 ACATCTTTCC CATGTAGTTG CAGGCTGCAT GAAATCTTCA TAGAAGGAAG CAAGGAAAGC
541 GAATGAAGTA ACTCGAGGGA ACTATAGACC ACACAAGTTC AAGTCCACTA AATTAAGTTT
601 TATTTTTGCC TCGTGC
Predicted gene structure (within gDNA segment 18357 to 15269):
Exon 1 17091 16843 ( 249 n); cDNA 140 382 ( 243 n); score: 0.747
Intron 1 16842 16338 ( 505 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.62)
Exon 2 16337 16287 ( 51 n); cDNA 383 431 ( 49 n); score: 0.608
MATCH 21326110- 11678487- 0.723 300 0.487 C
PGS_21326110-_11678487- (17091 16843,16337 16287)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
| |||| ||| ||| | | || | |||||| |||| || | || ||||||| |||| |||||
C-AAAATTTT TCAGATTCTC TG-TCACATC AAATCTTTAG ACGCATGCAT GAAGTATTAA 197
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG ATAAATCTTT 16972
||||||| | |||||||||| |||||||||| ||| || | |||| | |||||||
ATATATATGA AAATAAAAAC TAATTGCACA ATTTGGTCGG AATTGACGAG ACGAATCTTT 257
TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA GTGCTACAGT 16912
| | ||| | || | ||||| || || |||| |||||||||| | ||| |||| ||| ||| |
TGAGTCTAAT TAGTATATGA TTGGATAATA TTTGTCAAAT ACAAATGAAA GTGGTACTAT 317
CTCAAAAACC AAAAAGTTTT CGAAACTAAA CAAGGCCTGA CACTTGCACA TCTTTTTTAA 16852
| |||| |||| ||||||||| |||||||| | |||||| | | ||
TGTTATTTTG TAAAATTTTT TGAAACTAAA CAAGGCCTTA -ACTTGC-C- T-GGCCCCAA 373
AAAATATAAG GCCCTGTTTA GTTCCCACCT AAAAAATTTT CATCCATCAC ATTGAATCTT 16792
|||||||||
AAAATATAA. .......... .......... .......... .......... .......... 382
TAGACACATA CATAAAACAT TAAATGTAGA TAAAAAATAA TTACACAGTT TGGTTGAAAA 16732
.......... .......... .......... .......... .......... .......... 382
TCGCGAGATG AATTTTTTAA GCCTAGTTAG TCCATGATTA GCCTTAAGTG CTACAGTAAC 16672
.......... .......... .......... .......... .......... .......... 382
CCACATGTGC TAATAATAGA TTAATTATAC TTAATAGATT CGTCTTGCAG TTTCCTGACG 16612
.......... .......... .......... .......... .......... .......... 382
AGTTATGTAA TTTGTTTTTT TTATTAGTTT TTAAAAACCC CTCCCGACAT CCTTCCGACA 16552
.......... .......... .......... .......... .......... .......... 382
TATCCGATGT GACCTAAAAA ATTTTCATCT TCAATCTAAA CATGCCCTAA GTGAAATGCA 16492
.......... .......... .......... .......... .......... .......... 382
ATAATGTGTT GTAGAACTTT TATAGGCTAT CACACATGTG GTAGGGCGAG ACCATCATTA 16432
.......... .......... .......... .......... .......... .......... 382
CATTCGAAGA AGAAATATAT TCCGCAATCC ACAATTGGGA TAAAATAGCA AATCATCGAA 16372
.......... .......... .......... .......... .......... .......... 382
AAGGGCCTGA CCAATAAGAA TCAGGTCAAG GGTTCATACA ACTGTCATCA GCTATGCAGA 16312
|| | | | | | || ||||
.......... .......... .......... ....CAGAGG ATCTTATTAA GCACCTCAGA 408
GCCAAAAAAA AAACATATCA TTGGG 16287
||| |||| |||||| | ||||
-CCAGTAAAA AAACATGT-G TTGGC 431
********************************************************************************
EST sequence 142 +strand (File: 11680489+)
1 GCACGAGGCT ATGATTGGAC AATAATCATG AGATGAATCT TTTAAGCCTA TTTAATCTAT
61 GATTGGACAA TAATTGCTAA ATAAAAACGA AAGTGCTATA GTACAAAAAA CCAAAAAGTT
121 TTCGGAACTA AACAAGGCCA TAGGGTTGCA TTGCCCAACT CCTTGCATGA AATTTGGGTT
181 CTGATTTTTA CAAACTTTTC TTGAAATTGC AGGGAATCCT GTACTTAGGC ATTCACGCAG
241 CTTGCCTGAA ACTGGTCGAG GAACAATCCA AAAGGTCTCA TCAATTACAG AGAAACTATC
301 CCAGATGTCT GTGACCTCGA GAACACGAAG CACTGTGAAG CCTGCTGCCC CGGTGCTGAA
361 GGCCGGACAT GGTAAGTCGG ACTTTCTTGG GAAGTCTGAC GATATCCCTC CAGCAAAGAG
421 GCTGACAAGA AAATTGGTCA GCTAAATGAG GATATGTAGA GTGAAAATTC GATCAGCTGC
481 AGGAGGGGAA T
Predicted gene structure (within gDNA segment 17625 to 14361):
Exon 1 16981 16863 ( 119 n); cDNA 33 151 ( 119 n); score: 0.840
MATCH 21326110- 11680489+ 0.840 119 0.242 C
PGS_21326110-_11680489+ (16981 16863)
Alignment (genomic DNA sequence = upper lines):
ATAAATCTTT TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA 16922
|| ||||||| ||| |||| | || ||||||| || ||||||| ||| |||| ||||||||||
ATGAATCTTT TAAGCCTATT TAATCTATGA TTGGACAATA ATTGCTAAAT AAAAACGAAA 92
GTGCTACAGT CTCAAAAACC AAAAAGTTTT CGAAACTAAA CAAGGCCTGA CACTTGCAC 16863
|||||| ||| ||||||| |||||||||| || ||||||| ||||||| | |||||
GTGCTATAGT ACAAAAAACC AAAAAGTTTT CGGAACTAAA CAAGGCCATA GGGTTGCAT 151
********************************************************************************
EST sequence 43 -strand (File: 7553385-)
1 CCACATCACG CAATTATTGA TTATTATTTC CTTGTAGTAG ACTAACTAAT AATGCATAAT
61 ACGTAGTACG TACGTGCAGT GTACATGGAC CACACCACCA AGCAATGCAA CATTTGCAAG
121 ATGCAAACCA TGCAAGAACC AACACGGCAG CGGATGATCC CCAAAGGGTT TTTTTCAACA
181 AAAAAACACA CAAACCCGTG TACACTAATC TGACGACCTC CGGTGGCGCG TCTCGTAAGG
241 TAAGGCCTTG TTTACTTCCT AGAAAATTTT GCAAAATTTT TCAGATTCCC CGTCACATCG
301 AATCTTTAGA CGCATGCATG GAGTATTAAA TATAGACGAA AATAAAAACT AATTGCACAG
361 TTTGGTCGAA ATTGACGAGA CGAATCTTTT GAGCCTAGTT ACTCCATGAT TAGACAATAT
421 TTGTTAAATA AAAACGAAAA TGCTACAGTG TCCATTTCCC AAAATTTTTC GGAACTAAAC
481 AAGGCCTAAA GCTAGAGAAA AGAAAACTGC CATGCCCGTG CACAGGCAGA TTGAGATCGA
541 GAGACTTTGG TTACAGGGCC AGGATGGACC CGGCCCGGAC CTTGCCGCGC TCCCGTTCCC
601 GTGGGCCTTC CGCTTCCGCT TCCCTGGCGG GCAGCGCCCC AT
Predicted gene structure (within gDNA segment 19017 to 15799):
Exon 1 17091 16867 ( 225 n); cDNA 272 494 ( 223 n); score: 0.804
MATCH 21326110- 7553385- 0.804 225 0.350 C
PGS_21326110-_7553385- (17091 16867)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
| |||| ||| ||| | || | | |||||| ||| || | || ||||||| | || |||||
C-AAAATTTT TCAGA-TTCC CCGTCACATC GAATCTTTAG ACGCATGCAT GGAGTATTAA 329
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCG-CGA GATAAATCTT 16973
||||| || | |||||||||| |||||||||| |||| | |||| | ||| || ||||||
ATATAGACGA AAATAAAAAC TAATTGCACA GTTT-GGTCG AAATTGACGA GACGAATCTT 388
TTAAACCTAG TTACTCTATG ATTAGACAAT ATTTGTCAAA TAAAAACGAA AGTGCTACAG 16913
|| | ||||| |||||| ||| |||||||||| |||||| ||| |||||||||| | ||||||||
TTGAGCCTAG TTACTCCATG ATTAGACAAT ATTTGTTAAA TAAAAACGAA AATGCTACAG 448
TCTCAAAAAC CAAAAAGTTT TCGAAACTAA ACAAGGCCTG ACACTT 16867
| || | | | |||| ||| ||| |||||| ||||||||| | ||
TGTCCATTTC CCAAAATTTT TCGGAACTAA ACAAGGCCTA AAGCTA 494
********************************************************************************
EST sequence 90 -strand (File: 13587489-)
1 AATTTTCTGT CACATCGAAA TCTTGCGGCA TATGCATGAA ACATTAAATA TAGACGAAAA
61 TAAAAACTAA TCACACAGTT TGACTGTAAA TCGCGAGACG AATCTTTTGA TCCTAGTTAG
121 TCTATGATTG GACAATATTT ACCACAAACA AACGAAAGTG CTACAGTAGC GAAATCCAAA
181 ATTTTTTCAC ATCTGAACAA GGCCTCAGTT CAAATCTCAA AAGCAAAGCA AAATCTCAAG
241 GCCACTAACC TCGGGGCTGG GACCGGCGAC GTGTCGGAGC CACAGAGCAG AGCAGGGGAG
301 CCGGGGGAAT CCGTAAGAGC CACGGGCGTC TTCCTCCTTT CCGGCCTCCG GGATAGGGCG
361 CGCTGGCATG TGGCGCGCCT CCCGAGCGTG GGCTCAGGTT CCGCTCCAAG AAAGTCGGGC
421 GGAACTTGGC CCTCCTCGCC GACGCGGATC GGTGTCAACT CCTCTTCTGT CTGGAT
Predicted gene structure (within gDNA segment 17607 to 15067):
Exon 1 17078 16867 ( 212 n); cDNA 1 210 ( 210 n); score: 0.802
Intron 1 16866 16384 ( 483 n); Pd: 0.000 (s: 0.74), Pa: 0.162 (s: 0)
Exon 2 16383 16368 ( 16 n); cDNA 211 224 ( 14 n); score: 0.812
MATCH 21326110- 13587489- 0.802 228 0.479 C
PGS_21326110-_13587489- (17078 16867,16383 16368)
Alignment (genomic DNA sequence = upper lines):
AAATTTCTCA ACACATC-AA ATATTACGAC ACATGCATGA AGCATTAAAT ATATACAAAA 17020
|| ||||| |||||| || || || || | | |||||||| | |||||||| ||| || |||
AATTTTCT-G TCACATCGAA ATCTTGCGGC ATATGCATGA AACATTAAAT ATAGACGAAA 59
ATAAAAACTA ATTGCACAGT TTACCTATAA ATCGCGAGAT AAATCTTTTA AACCTAGTTA 16960
|||||||||| || |||||| || || ||| ||||||||| |||||||| | ||||||||
ATAAAAACTA ATCACACAGT TTGACTGTAA ATCGCGAGAC GAATCTTTTG ATCCTAGTTA 119
CTCTATGATT AGACAATATT TGTCAAATAA AAACGAAAGT GCTACAGTCT CAAAAACCAA 16900
||||||||| ||||||||| | || | | |||||||||| |||||||| | ||| ||||
GTCTATGATT GGACAATATT TACCACAAAC AAACGAAAGT GCTACAGTAG CGAAATCCAA 179
AAAGTTTTCG AAACTAAACA AGGCCTGACA CTTGCACATC TTTTTTAAAA AATATAAGGC 16840
|| ||||| | || |||| |||||| || ||
AATTTTTTCA CATCTGAACA AGGCCT--CA GTT....... .......... .......... 210
CCTGTTTAGT TCCCACCTAA AAAATTTTCA TCCATCACAT TGAATCTTTA GACACATACA 16780
.......... .......... .......... .......... .......... .......... 210
TAAAACATTA AATGTAGATA AAAAATAATT ACACAGTTTG GTTGAAAATC GCGAGATGAA 16720
.......... .......... .......... .......... .......... .......... 210
TTTTTTAAGC CTAGTTAGTC CATGATTAGC CTTAAGTGCT ACAGTAACCC ACATGTGCTA 16660
.......... .......... .......... .......... .......... .......... 210
ATAATAGATT AATTATACTT AATAGATTCG TCTTGCAGTT TCCTGACGAG TTATGTAATT 16600
.......... .......... .......... .......... .......... .......... 210
TGTTTTTTTT ATTAGTTTTT AAAAACCCCT CCCGACATCC TTCCGACATA TCCGATGTGA 16540
.......... .......... .......... .......... .......... .......... 210
CCTAAAAAAT TTTCATCTTC AATCTAAACA TGCCCTAAGT GAAATGCAAT AATGTGTTGT 16480
.......... .......... .......... .......... .......... .......... 210
AGAACTTTTA TAGGCTATCA CACATGTGGT AGGGCGAGAC CATCATTACA TTCGAAGAAG 16420
.......... .......... .......... .......... .......... .......... 210
AAATATATTC CGCAATCCAC AATTGGGATA AAATAGCAAA TCATCGAAAA GG 16368
|||| || || |||| |
.......... .......... .......... ......CAAA TC-TC-AAAA GC 224
********************************************************************************
EST sequence 53 -strand (File: 18052346-)
1 TTAAGCCTAG TTACTCCATG ATTGGACAAT GTTTGTCAAA TAAAAACGAA ATGCTACAGT
61 AGCCAAAAAC AAAAAATTTT ACGAACTAAA CAAGGCCTAA AACTACAATA CATAACTAAA
121 ATACATGATG ACAGCTTCAG CAGCCTGTCA GACTAGCAAT GCCAACAGTA CTGCAGCAAC
181 CTGCAGGCTG CAGCCGGCAG AGTCACAGGG GAACCTGCCT ACACCTGCGC TGCCTCCCGC
241 TCGCGGTTCC ACTGCTCAAT CTTTGCCCTC CGCTCCTCGC TGCCTTCCCT CCACGGGCTC
301 TTGCTCCGGC TCCTGGATCG CCCGCGCCGA CGGCGGCTCC CGTCGCTGTC GTGGCTGCGG
361 TGTCTCTCGC TGCTCCTGCG GCTGCCACTA CCGCTACGGT AGTGGTAGTA ATAGTCATGG
421 TCATCGTCAC GGTCCCTGGA CCTGGACGAG CTACCGTGGC GGCGGTACGG GCTCGGGCTG
481 CGGCTGCCGC GGCTATGGCT CCGGTGGGAG CGATGCAGGT GGC
Predicted gene structure (within gDNA segment 17401 to 14449):
Exon 1 16972 16867 ( 106 n); cDNA 1 105 ( 105 n); score: 0.849
Intron 1 16866 16220 ( 647 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.67)
Exon 2 16219 16178 ( 42 n); cDNA 106 144 ( 39 n); score: 0.667
MATCH 21326110- 18052346- 0.849 148 0.283 C
PGS_21326110-_18052346- (16972 16867,16219 16178)
Alignment (genomic DNA sequence = upper lines):
TTAAACCTAG TTACTCTATG ATTAGACAAT ATTTGTCAAA TAAAAACGAA AGTGCTACAG 16913
|||| ||||| |||||| ||| ||| |||||| ||||||||| |||||||||| | ||||||||
TTAAGCCTAG TTACTCCATG ATTGGACAAT GTTTGTCAAA TAAAAACGAA A-TGCTACAG 59
TCTCAAAAAC CAAAAAGTTT TCGAAACTAA ACAAGGCCTG ACACTTGCAC ATCTTTTTTA 16853
| | |||| |||||| ||| | |||||| ||||||||| | |||
TAGCCAAAAA CAAAAAATTT TACGAACTAA ACAAGGCCTA AAACTA.... .......... 105
AAAAATATAA GGCCCTGTTT AGTTCCCACC TAAAAAATTT TCATCCATCA CATTGAATCT 16793
.......... .......... .......... .......... .......... .......... 105
TTAGACACAT ACATAAAACA TTAAATGTAG ATAAAAAATA ATTACACAGT TTGGTTGAAA 16733
.......... .......... .......... .......... .......... .......... 105
ATCGCGAGAT GAATTTTTTA AGCCTAGTTA GTCCATGATT AGCCTTAAGT GCTACAGTAA 16673
.......... .......... .......... .......... .......... .......... 105
CCCACATGTG CTAATAATAG ATTAATTATA CTTAATAGAT TCGTCTTGCA GTTTCCTGAC 16613
.......... .......... .......... .......... .......... .......... 105
GAGTTATGTA ATTTGTTTTT TTTATTAGTT TTTAAAAACC CCTCCCGACA TCCTTCCGAC 16553
.......... .......... .......... .......... .......... .......... 105
ATATCCGATG TGACCTAAAA AATTTTCATC TTCAATCTAA ACATGCCCTA AGTGAAATGC 16493
.......... .......... .......... .......... .......... .......... 105
AATAATGTGT TGTAGAACTT TTATAGGCTA TCACACATGT GGTAGGGCGA GACCATCATT 16433
.......... .......... .......... .......... .......... .......... 105
ACATTCGAAG AAGAAATATA TTCCGCAATC CACAATTGGG ATAAAATAGC AAATCATCGA 16373
.......... .......... .......... .......... .......... .......... 105
AAAGGGCCTG ACCAATAAGA ATCAGGTCAA GGGTTCATAC AACTGTCATC AGCTATGCAG 16313
.......... .......... .......... .......... .......... .......... 105
AGCCAAAAAA AAAACATATC ATTGGGGTTT GCTATTAGAT CAATCAATTG CTTATGCAGT 16253
.......... .......... .......... .......... .......... .......... 105
TTCCAATAAA AAAAATGCTT ATGCAAATTT CTCCCATATA CAACTAAAGT TACATGAGCA 16193
| ||| | ||||||| ||||||| |
.......... .......... .......... ...CAATACA TAACTAAA-A TACATGATGA 131
CATTCCTCCT GAAAC 16178
|| | || | | |
CA-GCTTCA- GCAGC 144
********************************************************************************
EST sequence 45 -strand (File: 7554466-)
1 AACCAAACAG TCAAACATCC AATTAAATTT TTGAGTCTAG TTACTCCATG ATTGGACAAG
61 GTTTGTCAAA TAAAAACGAA ATTGCTAGTG TCAAAAACAG AAAAAATTTT GGATCTAAAC
121 AAGGCCTTAC TTAACAAGCA TACAGTCTTC TCCTTGTCCG CACCATTTCA TTTCTCTTAC
181 ATAAATATAA AAGTCTCATA GATTATTCAT GGGGTGCGTC TACACAACAC CTTGTTGATC
241 CGAAGGTTCA CTGTCCCCCA TTCTGTTCCA ATCGAAAACA CCAATGGCAT ACGCCCAGCC
301 GGTTGTCAAA ACCGCAAGAC CAACAGAGGA AGTGAGTACA ACATTCCTTG GCAAGTTGTC
361 CATAGCTAAT GAAAGCTCCT TGAAATTCTT CATGTCCTTC TCCATATCGC GCAAAAAACG
421 CTTCTCCAGT TTCTTGTAAT TCCTCCACCT TGGTCGAGCA TTCCTGGTCT CATTCACTGC
481 TCTCTTGGCT CCTCCACTCT GAGAGGAGTG GGAGGTGAGA AGTCGGGAGC TCGCCGGCGG
541 CGACACCACG GGGGTCGACG CCCGCTGGAG AACGGACGTG GCAGGGAACC TCAGCTTACG
601 GGCCAGAACG C
Predicted gene structure (within gDNA segment 17551 to 14154):
Exon 1 16966 16871 ( 96 n); cDNA 37 130 ( 94 n); score: 0.833
MATCH 21326110- 7554466- 0.833 96 0.157 C
PGS_21326110-_7554466- (16966 16871)
Alignment (genomic DNA sequence = upper lines):
CTAGTTACTC TATGATTAGA CAATATTTGT CAAATAAAAA CGAAAGTGCT ACAGTCTCAA 16907
|||||||||| |||||| || ||| ||||| |||||||||| ||||| |||| ||| ||||
CTAGTTACTC CATGATTGGA CAAGGTTTGT CAAATAAAAA CGAAATTGCT --AGTGTCAA 94
AAACCAAAAA GTTTTCGAAA CTAAACAAGG CCTGAC 16871
|||| |||| ||| | | |||||||||| ||| ||
AAACAGAAAA AATTTTGGAT CTAAACAAGG CCTTAC 130
********************************************************************************
EST sequence 33 -strand (File: 18066500-)
1 GGGCCCCCCC TCGAGGCCCC CGCGGATCTC GGCGCCCGAG AGGTCGACGC CGACGCCGAC
61 GCCGTCACCG TGGCCCGTCG CCTCGCCCAT CCTGCCGTGC CCCGTGCCGT CACAGGGACA
121 GATCGCTCGG CGCCTGGTAT CGCGCCGCCC GCATTCACAC CGGCACCGCC GGGCCCGCCC
181 CCGCGCTGCC TGCCTGCGTT CGTCGCCGCC TCGGTTTGAC TGGCAGGCTC GCTGTGCTGT
241 GCGGCGCCCA ACTGCCGGCG GGCGTCTGGG AGGAGTTGCA GTTGGGAGGA GTTCGCGCTG
301 GCTGGTCTCG GTCGCGTCGA GTGGCGTGGC CGCGTGGGCG GAGTCGTGGT GCGCGGGGCC
361 GGGGCGGTAC AACCAAGACA AGTTTGCAGT GCACGCGCCG GGGTTGGACT TTTATATTTG
421 GGTCTAGTTT TTTTTTAAAA AAACCAAAAC ATTTTCAAGA TTTCTCGTTA AATCGAATCT
481 TGCGGTATAT ATATAGAGTA TTAAATATAG ATAAAAATAA AAACTAATTA CATAATTTGT
541 CTGTAAATCG CGAGACGAAT CTTTTAAGTC AAATTACTCT ATGATTGGAT AACTTTTGTC
601 AAATAAAAAC GAAAATGCTA TAGTGTTATA ATTTAAACAT TTTCCGGATC TAAACAAGGC
661 TT
Predicted gene structure (within gDNA segment 19888 to 16382):
Exon 1 17097 16874 ( 224 n); cDNA 439 662 ( 224 n); score: 0.777
MATCH 21326110- 18066500- 0.777 224 0.338 C
PGS_21326110-_18066500- (17097 16874)
Alignment (genomic DNA sequence = upper lines):
AAAAACCAAA AACTTTTCAA AATTTCTCAA CACATCAAAT ATTACGACAC ATGCATGAAG 17038
|||||||||| | ||||||| ||||||| | ||| ||| || || | || || ||
AAAAACCAAA ACATTTTCAA GATTTCTCGT TAAATCGAAT CTTGCGGTAT ATATATAGAG 498
CATTAAATAT ATACAAAAAT AAAAACTAAT TGCACAGTTT ACCTATAAAT CGCGAGATAA 16978
||||||||| | | |||||| |||||||||| | || | ||| || ||||| ||||||| |
TATTAAATAT AGATAAAAAT AAAAACTAAT TACATAATTT GTCTGTAAAT CGCGAGACGA 558
ATCTTTTAAA CCTAGTTACT CTATGATTAG ACAATATTTG TCAAATAAAA ACGAAAGTGC 16918
||||||||| | | ||||| |||||||| | | || |||| |||||||||| |||||| |||
ATCTTTTAAG TCAAATTACT CTATGATTGG ATAACTTTTG TCAAATAAAA ACGAAAATGC 618
TACAGTCTCA AAAACCAAAA AGTTTTCGAA ACTAAACAAG GCCT 16874
|| ||| | | || ||| | ||| || | ||||||||| || |
TATAGTGTTA TAATTTAAAC ATTTTCCGGA TCTAAACAAG GCTT 662
********************************************************************************
EST sequence 14 -strand (File: 20549510-)
1 CCCAAAAAGT TTTCAAGATT CCATGTCACA TCGAATCTTG CGGCATATGC ACGAAGCATT
61 AAATATAGAC GAAAACAAAA ACTAATCACA CAGTTTGACT CTAAATCGCG AGACGAATCT
121 TTTGACCATA GTTAGTCTAT AATTGGATAA TATTTACCAC AAACAAACGA AAGTGCTACA
181 GTGCCGAAAT CCGAAATTTT TTCGGAACTA AACAAGGCCT AGCTCAAATT TCAGAAACCT
241 ATGTCCCTTC TGGGAATATC TCGCTTCAAT CTTGCAGGAC AATTCCAGCT ATGAACTCAT
301 TCGACAAAAA GACGGTAATA TTTCCTAACC TTCCCGTTTG AAGCATACAA AGCCCTGATA
361 TTGGTTTCTT ATCCATCTTA TATTCTTATG CATAGGCCCT CACGTGGCAA TCGCAGTGGT
421 CACTCAATCA AGTCAATGGT AGCACAGTAT TCCATCGCAT CCTCACCAAT GCAATTATCA
481 AAATGCAGCT GGCATCAACC AGACTGTCTT ATCTACGGAA ACCAGTACTC CCGCTAGGAT
541 ATCTGAAGTG TGGCACAACG TATGTTCTTC TGGATGAGGA TGGTACCCAG TTCCTCGTGC
601 CG
Predicted gene structure (within gDNA segment 17606 to 14664):
Exon 1 17093 16874 ( 220 n); cDNA 1 220 ( 220 n); score: 0.800
MATCH 21326110- 20549510- 0.800 220 0.365 C
PGS_21326110-_20549510- (17093 16874)
Alignment (genomic DNA sequence = upper lines):
ACCAAAAACT TTTCAAAATT TCTCAACACA TCAAATATTA CGACACATGC ATGAAGCATT 17034
||||||| | |||||| ||| | |||| || ||| || || || |||| | ||||||||
CCCAAAAAGT TTTCAAGATT CCATGTCACA TCGAATCTTG CGGCATATGC ACGAAGCATT 60
AAATATATAC AAAAATAAAA ACTAATTGCA CAGTTTACCT ATAAATCGCG AGATAAATCT 16974
||||||| || |||| |||| |||||| || |||||| || ||||||||| ||| |||||
AAATATAGAC GAAAACAAAA ACTAATCACA CAGTTTGACT CTAAATCGCG AGACGAATCT 120
TTTAAACCTA GTTACTCTAT GATTAGACAA TATTTGTCAA ATAAAAACGA AAGTGCTACA 16914
||| | | || |||| ||||| ||| || || ||||| || | | |||||| ||||||||||
TTTGACCATA GTTAGTCTAT AATTGGATAA TATTTACCAC AAACAAACGA AAGTGCTACA 180
GTCTCAAAAA CCAAAAAGTT TTCGAAACTA AACAAGGCCT 16874
|| | ||| || ||| || |||| ||||| ||||||||||
GTGCCGAAAT CCGAAATTTT TTCGGAACTA AACAAGGCCT 220
********************************************************************************
EST sequence 13 -strand (File: 20548647-)
1 GTTTTCAAGA TTCCATGTCA CATCGAATCT TGCGGCATAT GCACGAAGCA TTAAATATAG
61 ACGAAAACAA AAACTAATCA CACAGTTTGA CTCTAAATCG CGAGACGAAT CTTTTGACCA
121 TAGTTAGTCT ATAATTGGAT AATATTTACC ACAAACAAAC GAAAGTGCTA CAGTGCCGAA
181 ATCCGAAATT TTTTCGGAAC TAAACAAGGC CTAGCTCAAA TTTCAGAAAC CTATGTCCCT
241 TCTGGGAATA TCTCGCTTCA ATCTTGCAGG ACAATTCCAG CTATGAACTC ATTCGACAAA
301 AAGACGGTAA TATTTCCTAA CCTTCCCGTT TGAAGCATAC AAAGCCCTGA TATTGGTTTC
361 TTATCCATCT TATATTCTTA TGCATAGGCC CTCACGTGGC AATCGCAGTG GTCACTCAAT
421 CAAGTCAATG GTAGCACAGT ATTCCATCGC ATCCTCACCA ATGCAATTAT CAAAATGCAG
481 CTGGCATCAA CCAGACTGTC TTATCTACGG AAACCAGTAC TCCCGCTAGG ATATCTGAAG
541 TGTGGCACAA CGTATGTTCT TCTGGATGAG GATGGTACCC AGTTCCTCGT GCCGA
Predicted gene structure (within gDNA segment 17566 to 14659):
Exon 1 17085 16874 ( 212 n); cDNA 1 212 ( 212 n); score: 0.797
MATCH 21326110- 20548647- 0.797 212 0.356 C
PGS_21326110-_20548647- (17085 16874)
Alignment (genomic DNA sequence = upper lines):
CTTTTCAAAA TTTCTCAACA CATCAAATAT TACGACACAT GCATGAAGCA TTAAATATAT 17026
||||||| | || | || |||| ||| | | || || || ||| |||||| |||||||||
GTTTTCAAGA TTCCATGTCA CATCGAATCT TGCGGCATAT GCACGAAGCA TTAAATATAG 60
ACAAAAATAA AAACTAATTG CACAGTTTAC CTATAAATCG CGAGATAAAT CTTTTAAACC 16966
|| |||| || |||||||| |||||||| || ||||||| ||||| ||| ||||| | |
ACGAAAACAA AAACTAATCA CACAGTTTGA CTCTAAATCG CGAGACGAAT CTTTTGACCA 120
TAGTTACTCT ATGATTAGAC AATATTTGTC AAATAAAAAC GAAAGTGCTA CAGTCTCAAA 16906
|||||| ||| || ||| || ||||||| | | | | |||| |||||||||| |||| | ||
TAGTTAGTCT ATAATTGGAT AATATTTACC ACAAACAAAC GAAAGTGCTA CAGTGCCGAA 180
AACCAAAAAG TTTTCGAAAC TAAACAAGGC CT 16874
| || ||| |||||| ||| |||||||||| ||
ATCCGAAATT TTTTCGGAAC TAAACAAGGC CT 212
********************************************************************************
EST sequence 34 -strand (File: 8548754-)
1 AGCGTTGTTT AGTTCCCAAA ATATTTTGCA AAATTTCTCA GATTCCCCAT CACATTGAAT
61 CTTGCGGCAC ATGCATGAAG CACTAAATAT AAATAAAAAA ATAACTAATT ACACAGTTTA
121 CCGCGAGATG AATCTTTTGA GCCTAGTTAG TCCATGATCA GACAATATTT GTCAAATACA
181 AACCAAAATG CTACTATTCC TATTTTGCAA AAAAAATTAG AACTAAACAA GGCCTTAGTG
241 TACTGGATTG AGCGAGCAAA AAAAAATTTA GCCTATGTTA TTTAGCCCCC CTCTTGGTCC
301 ATTTCTGGGT CCGCCGCTGC ATCCAGTCAT GAATACATGA CGTTTTGTTT TCTTTGTCCA
361 AAATGTCTGG TATTCATGAC
Predicted gene structure (within gDNA segment 18049 to 15849):
Exon 1 17066 16874 ( 193 n); cDNA 52 235 ( 184 n); score: 0.777
MATCH 21326110- 8548754- 0.777 193 0.508 C
PGS_21326110-_8548754- (17066 16874)
Alignment (genomic DNA sequence = upper lines):
ACATCAAATA TTACGACACA TGCATGAAGC ATTAAATATA TACAAAAATA AAAACTAATT 17007
|||| ||| || || |||| |||||||||| | |||||||| | ||||| | | ||||||||
ACATTGAATC TTGCGGCACA TGCATGAAGC ACTAAATATA AATAAAAA-A ATAACTAATT 110
GCACAGTTTA CCTATAAATC GCGAGATAAA TCTTTTAAAC CTAGTTACTC TATGATTAGA 16947
||||||||| | | ||||||| || |||||| | | ||||||| || ||||| |||
ACACAGTTTA -C-------C GCGAGATGAA TCTTTTGAGC CTAGTTAGTC CATGATCAGA 162
CAATATTTGT CAAATAAAAA CGAAAGTGCT AC-AGTCTCA AAAACCAAAA AGTTTTCGAA 16888
|||||||||| |||||| ||| | ||| |||| || | || | ||||| | || | |
CAATATTTGT CAAATACAAA CCAAAATGCT ACTATTCCTA TTTTGCAAAA AAAATTAG-A 221
ACTAAACAAG GCCT 16874
|||||||||| ||||
ACTAAACAAG GCCT 235
********************************************************************************
EST sequence 30 -strand (File: 6672435-)
1 CGAAAATAAA ACTAATTACA CAGTTTGCTT GTAAATCGCG AGATGAATCT TTTAACCCTA
61 ATTAGTCTAT GATTGGAGAA TATTTACCAC AAACAAACAA AAGTGCTACA GTAGCGAAAT
121 CCAAAAAGTT TTCGTATCTA AACAAGGCCT TGGTGTGGAA AAAGTTCGTG CTACTGGATG
181 ATGACAGACA GCTTGGGGGC TTGAGCACTT GGTACCCTGG AGGATTTCTA AAGACTGAGC
241 GCACGTCTTG TTTAGTGTAC AATGTACGTT AATCATGGTC TTCATGAGGA AATGTCATCT
301 CCTTTCCACA GCAGGCCAGT GCATAAAATT CAGTTGCGTT TGCGTACCCA TAATCATCAC
361 TCGTGCGGTC ATGCTTAACA CAACTGCAAT TTCAAGCTCC ACTGATGTAA ATGATCTCGC
421 CTTTTGGTAG GCAAGTGTAT CTCAGTTCCT TTTTTCCCCC ACGTTCCTAT GATTTACACA
481 CACTTAAACA GTGCCTTTTT CACAATTGAG GCGAGTTTAA CACTTCAGCA CCAAAACTTT
541 TCATAATACA GACGACACCA ATCAACACTT GGATGCAAAA TAGAACTAAT CTACACC
Predicted gene structure (within gDNA segment 17452 to 14339):
Exon 1 17024 16874 ( 151 n); cDNA 1 150 ( 150 n); score: 0.841
MATCH 21326110- 6672435- 0.841 151 0.253 C
PGS_21326110-_6672435- (17024 16874)
Alignment (genomic DNA sequence = upper lines):
CAAAAATAAA AACTAATTGC ACAGTTTACC TATAAATCGC GAGATAAATC TTTTAAACCT 16965
| |||||| | |||||||| | ||||||| | | |||||||| ||||| |||| |||||| |||
CGAAAATA-A AACTAATTAC ACAGTTTGCT TGTAAATCGC GAGATGAATC TTTTAACCCT 59
AGTTACTCTA TGATTAGACA ATATTTGTCA AATAAAAACG AAAGTGCTAC AGTCTCAAAA 16905
| ||| |||| ||||| || | |||||| || | | |||| |||||||||| ||| | |||
AATTAGTCTA TGATTGGAGA ATATTTACCA CAAACAAACA AAAGTGCTAC AGTAGCGAAA 119
ACCAAAAAGT TTTCGAAACT AAACAAGGCC T 16874
||||||||| ||||| | || |||||||||| |
TCCAAAAAGT TTTCGTATCT AAACAAGGCC T 150
********************************************************************************
EST sequence 38 -strand (File: 6673765-)
1 GAGCATAATT AGTCTATGAT TAGACAATAA TTGTCAAATA AAAACGAAAG TGATACAGTA
61 GCAAAATAAA AAAAAAAATC ACGAACTAAA CAAGGCCTCA GTTTTATATG CATTTTACAC
121 AGTATGGCAA ATTGGTAAAC ATTACCAAAA TTTGTGTGCT TTCCACATTA TGGGGAAAAA
181 AAATTGGCCA CCACTTCTAC CAGTGAGAAG AGGACTACAT ATATATAGTA CGTATGCCTT
241 ATTTTCATGT CTACATGCAT TTAAGGTCTC AAAGATAATC TAAACTGCTT CACATAGCCT
301 CAACTAGAAT TTACATTTAT GCCGATGGAT GTGCTGCACA TGCGACATCT CATATGTCTG
361 TAAATAAGAG CTGAAACAAA ACATGTGCGG TTTACAAGAC CTCCCAACCA TCCTCTAGAT
421 CATCCGATGA AGAAACCAGT TGATATCGTC CAAGA
Predicted gene structure (within gDNA segment 17323 to 14789):
Exon 1 16970 16874 ( 97 n); cDNA 1 98 ( 98 n); score: 0.794
Intron 1 16873 16478 ( 396 n); Pd: 0.000 (s: 0.71), Pa: 0.593 (s: 0)
Exon 2 16477 16453 ( 25 n); cDNA 99 123 ( 25 n); score: 0.680
Intron 2 16452 14799 (1654 n); Pd: 0.000 (s: 0), Pa: 0.704 (s: 0)
Exon 3 14798 14792 ( 7 n); cDNA 124 130 ( 7 n); score: 0.714
MATCH 21326110- 6673765- 0.794 129 0.284 C
PGS_21326110-_6673765- (16970 16874,16477 16453,14798 14792)
Alignment (genomic DNA sequence = upper lines):
AAACCTAGTT ACTCTATGAT TAGACAATAT TTGTCAAATA AAAACGAAAG TGCTACAGTC 16911
| | || || | |||||||| ||||||||| |||||||||| |||||||||| || ||||||
GAGCATAATT AGTCTATGAT TAGACAATAA TTGTCAAATA AAAACGAAAG TGATACAGTA 60
TCAAAAACCA AAAAGTTTTC -GAAACTAAA CAAGGCCTGA CACTTGCACA TCTTTTTTAA 16852
||||| | |||| || ||||||| ||||||||
GCAAAATAAA AAAAAAAATC ACGAACTAAA CAAGGCCT.. .......... .......... 98
AAAATATAAG GCCCTGTTTA GTTCCCACCT AAAAAATTTT CATCCATCAC ATTGAATCTT 16792
.......... .......... .......... .......... .......... .......... 98
TAGACACATA CATAAAACAT TAAATGTAGA TAAAAAATAA TTACACAGTT TGGTTGAAAA 16732
.......... .......... .......... .......... .......... .......... 98
TCGCGAGATG AATTTTTTAA GCCTAGTTAG TCCATGATTA GCCTTAAGTG CTACAGTAAC 16672
.......... .......... .......... .......... .......... .......... 98
CCACATGTGC TAATAATAGA TTAATTATAC TTAATAGATT CGTCTTGCAG TTTCCTGACG 16612
.......... .......... .......... .......... .......... .......... 98
AGTTATGTAA TTTGTTTTTT TTATTAGTTT TTAAAAACCC CTCCCGACAT CCTTCCGACA 16552
.......... .......... .......... .......... .......... .......... 98
TATCCGATGT GACCTAAAAA ATTTTCATCT TCAATCTAAA CATGCCCTAA GTGAAATGCA 16492
.......... .......... .......... .......... .......... .......... 98
ATAATGTGTT GTAGAACTTT TATAGGC-TA TCACACATGT GGTAGGGCGA GACCATCATT 16433
| ||| |||| || | | ||||| ||
.......... ....CAGTTT TATATGCATT TTACACA-GT .......... .......... 123
ACATTCGAAG AAGAAATATA TTCCGCAATC CACAATTGGG ATAAAATAGC AAATCATCGA 16373
.......... .......... .......... .......... .......... .......... 123
AAAGGGCCTG ACCAATAAGA ATCAGGTCAA GGGTTCATAC AACTGTCATC AGCTATGCAG 16313
.......... .......... .......... .......... .......... .......... 123
AGCCAAAAAA AAAACATATC ATTGGGGTTT GCTATTAGAT CAATCAATTG CTTATGCAGT 16253
.......... .......... .......... .......... .......... .......... 123
TTCCAATAAA AAAAATGCTT ATGCAAATTT CTCCCATATA CAACTAAAGT TACATGAGCA 16193
.......... .......... .......... .......... .......... .......... 123
CATTCCTCCT GAAACGTAAT ACTGAAAGCA TACTTTTGAT TTGAATGGTT GAATCTACAA 16133
.......... .......... .......... .......... .......... .......... 123
GCTATACGGT TTGTTTCCAG AATCTGATCG ATCTATCATT TCCACAAATA ACAAAAACTG 16073
.......... .......... .......... .......... .......... .......... 123
GTTCAACTGG GGAGTGGTCG AGCCATCTGG GAGCACCAGT GCTGCCAGAG GGCAATCTTG 16013
.......... .......... .......... .......... .......... .......... 123
CAACCTTTTC TGCAGTAAGT GCATCCCAGA CGACAACCTG AAGAGTGACG TATCATAGTT 15953
.......... .......... .......... .......... .......... .......... 123
AAGCTTGCTG AAATACAAAT ATATATACTG TTCTCAATTT GGAATTTACC TCATTGTTTT 15893
.......... .......... .......... .......... .......... .......... 123
GTTCATCAAC TGATAGAACA AATTCTTCGG TTTCATTGAA GACAGCCTGG ATAGTAAGAA 15833
.......... .......... .......... .......... .......... .......... 123
CAGTTATTAT CATATTTATT GTCTATCATA GCAAGGTTAG GTATGTTGTT ATCCTAAGCT 15773
.......... .......... .......... .......... .......... .......... 123
GCAAGCTCAA ACCAGCCTAT TTTCAAATTA AAGAATTGCA ATATTTTGTT TCCTAAAATT 15713
.......... .......... .......... .......... .......... .......... 123
TTGGGTAAAA ATAATATATA TGGCACACGA GTAAATTTAA ATCAGGAAAA AATAATAATC 15653
.......... .......... .......... .......... .......... .......... 123
TTATAGAAAC ACAGAGAAAC TAACCTGACA ACGAAATTGT CTGCGAATGG CTCCTGCATA 15593
.......... .......... .......... .......... .......... .......... 123
TTGCTTCACA AGTCGTCCAG TGCCAACTTC CCATAACTTG ACACAAGAAT CTTTCCCACA 15533
.......... .......... .......... .......... .......... .......... 123
AGATAGGACA TACCTGAAAG AACGTAGTAA ACTTCATAAC AGATAACCAG AATACAGTGT 15473
.......... .......... .......... .......... .......... .......... 123
GCAGTTTTAT GAAAGAAATC CATGAACTAT CTAAGCATAT ACTTCGGGTA GTCAAAGTTC 15413
.......... .......... .......... .......... .......... .......... 123
ACTACATCAA TTTTTTAGAT CAATCTTATA TGCAAGTGCA TTCACGCTGC ATATAACCAC 15353
.......... .......... .......... .......... .......... .......... 123
ATAAACACTA GGCCTTTCAG AAGAAGTCTA AAAAGTGTTT ATAGGCAAGT TAGTTGTTTA 15293
.......... .......... .......... .......... .......... .......... 123
GTGGTGAAAT AGTAGGGTAA AGGAGAAAGA GTTATTCGTG TTATAAAGTT ACGACACGTC 15233
.......... .......... .......... .......... .......... .......... 123
TGAAACACAG GAAATTATCC AGGACATGTT ATAAATCATT CAGAATCACT ACAAGATTCC 15173
.......... .......... .......... .......... .......... .......... 123
CACATTCCAA ACAGGGTTTG AAGTAGTTAC TGTCTTGAAT CATACAGCAT ATGCCTTTCT 15113
.......... .......... .......... .......... .......... .......... 123
CTCTGTTCTT CAAACCAAAC AATGACTGGA TTTTATCTTG AGGGAAGAGC ACCTTAGACA 15053
.......... .......... .......... .......... .......... .......... 123
TGCTGGTAGC TCGCTTACCT CTCATCTCTG GTGAAAATTG CGCTAGTAGC TTCTGCAGAT 14993
.......... .......... .......... .......... .......... .......... 123
CCATGTGCTC CAATAATAGG TCGAACACAT TCAGCAGATA CTCCATCCCA AATGCGCAGA 14933
.......... .......... .......... .......... .......... .......... 123
GAACCATCTT TAGAAGCAGT CACATACAAG CTCCCAGTAC AGGAGTAGCG TACCTGGCAG 14873
.......... .......... .......... .......... .......... .......... 123
CAACATCAGT AAGCATGGCT GGCGGAGAAC TTTGATGAGA ATATAACCAA TGCAATCTAA 14813
.......... .......... .......... .......... .......... .......... 123
TGCTTGTGAA TCAGAAGGAA A 14792
| || | |
.......... ....ATGGCA A 130
********************************************************************************
EST sequence 54 -strand (File: 14514528-)
1 TTNTTCGTCA CATCAAATCT TTAGATCAAA TCTTTGAACA TATGCATGAA GCATTAAATA
61 TAGATAAAAA GAATAACTAA TTGCACAGTT TGTTTGTGAG ACAAATCTTT TAAGCCTAAT
121 TAGTCCATAA TTGAACAATA ATAACCAAAT ACAAACGAAA ATGCTACACT ATTCAAAACC
181 AACAAATTTT CCCAACTAAA CAAGGCCATA GCCCATAGGC CATAGGGGTG GGGTGTGTGC
241 GGCGCACGTC AACTTATTCG CTCAGCTGAC ACTCTTCGTA TCTTATACGT AGCATTATAT
301 ATGGCACACA AAGATTGAAA ATCTTGCAAT TTGCAGTGCA GCTTACATTG GCCAGCAGTC
361 AAATTGTTTA TTAGCGACTT CTTCAAAACT AGGCAACTCC GTCCTCTCTG AAATTTCCGA
421 TCCATGAAGG CCCAAGCCCA ACCCAACCAG AATTTCCATA TTTGAAACTC TTAGATCTCT
481 TCCTGTTCTG GCGATGACTG ACCACCCTCG TGC
Predicted gene structure (within gDNA segment 17557 to 14365):
Exon 1 17064 16875 ( 190 n); cDNA 25 207 ( 183 n); score: 0.789
MATCH 21326110- 14514528- 0.789 190 0.370 C
PGS_21326110-_14514528- (17064 16875)
Alignment (genomic DNA sequence = upper lines):
ATCAAATATT ACGACACATG CATGAAGCAT TAAATATATA CAAAAATAAA AACTAATTGC 17005
||||||| || ||| ||| |||||||||| |||||||| | ||||| || ||||||||||
ATCAAATCTT TGAACATATG CATGAAGCAT TAAATATAGA TAAAAAGAAT AACTAATTGC 84
ACAGTTTACC TATAAATCGC GAGATAAATC TTTTAAACCT AGTTACTCTA TGATTAGACA 16945
||||||| | | | | |||| ||||| |||||| ||| | ||| || | | ||| |||
ACAGTTT--G T-T---T-GT GAGACAAATC TTTTAAGCCT AATTAGTCCA TAATTGAACA 137
ATATTTGTCA AATAAAAACG AAAGTGCTAC AGTCTCAAAA ACCAAAAAGT TTTCGAAACT 16885
||| | || |||| ||||| ||| |||||| | | | ||| ||||| || | |||| ||||
ATAATAACCA AATACAAACG AAAATGCTAC ACTATTCAAA ACCAACAAAT TTTCCCAACT 197
AAACAAGGCC 16875
||||||||||
AAACAAGGCC 207
********************************************************************************
EST sequence 89 -strand (File: 11996680-)
1 TTACGGCATA TGCATAGAGC ATTAAATATA GATAAAAATA AAAAGTAATT GTACAGTTTG
61 TCTGTAAATC GCGAGATGAA TCTTTTAAGC CTAGTTACTT CATGATTGGA CAATGTTTGT
121 CAAATAAAAA TGAAAGTGCT ACAATGTTAA AATCCAAAAA CTTTTTAGAT CTAAACAAAG
181 CTTAAAAGAG CTATTAACGG TACGACTGTT GGCAGGCAGC GCTGCAATGC AAAGGCTGTT
241 GATGCACAAT GCAATCCTGC AAATCGTCAG CGAAACATTA GACATTGACA GAGTTTAGCA
301 TGTTCACGAC AGTGGAGGGC CCAGGGTATG CCACTAAGTT CTCTGAATGG CGTTGTGGCA
361 AACAGCTAAT GCTGCTACTG GTGCGCTGGA GGCTGGACGC CGGAGCTTCA CATGGCTCCC
421 ACTTTGTACA GTTATACAAA TCTACTAGCT GCTTTAAGCC GAGCAACTGT AACAACAGTA
481 GACATGTACA GTTATACAAA TCTAGCTGGC ACCCCGAACA CCCGAGAGTC CGAGTAGCAT
541 CAACCTTAGG CCATCAGTTT TGCAGCATTT CTGTTCTTCA ATGTCAAAAA TGCTGCTTCA
601 GCAAATGCTT GCGCAGCTTG GGCTTCTGCT TCTGCAGACT CTGCTTCTTT CGCTGCAGCT
661 T
Predicted gene structure (within gDNA segment 17429 to 14024):
Exon 1 17056 16876 ( 181 n); cDNA 1 181 ( 181 n); score: 0.845
MATCH 21326110- 11996680- 0.845 181 0.274 C
PGS_21326110-_11996680- (17056 16876)
Alignment (genomic DNA sequence = upper lines):
TTACGACACA TGCATGAAGC ATTAAATATA TACAAAAATA AAAACTAATT GCACAGTTTA 16997
||||| || | ||||| ||| |||||||||| | ||||||| |||| ||||| | |||||||
TTACGGCATA TGCATAGAGC ATTAAATATA GATAAAAATA AAAAGTAATT GTACAGTTTG 60
CCTATAAATC GCGAGATAAA TCTTTTAAAC CTAGTTACTC TATGATTAGA CAATATTTGT 16937
|| |||||| ||||||| || |||||||| | ||||||||| |||||| || |||| |||||
TCTGTAAATC GCGAGATGAA TCTTTTAAGC CTAGTTACTT CATGATTGGA CAATGTTTGT 120
CAAATAAAAA CGAAAGTGCT ACAGTCTCAA AAACCAAAAA GTTTTCGAAA CTAAACAAGG 16877
|||||||||| ||||||||| ||| | | || || ||||||| |||| | |||||||| |
CAAATAAAAA TGAAAGTGCT ACAATGTTAA AATCCAAAAA CTTTTTAGAT CTAAACAAAG 180
C 16876
|
C 181
********************************************************************************
EST sequence 127 +strand (File: 9301429+)
1 GGTAAGATAA AAAGATTCCC TGCACTAGGA GGGGACGGTA TCCCGGGATA CTGTTTGTGG
61 TGGCTCGTCA CTACTCACTT ATCCTATCAC TTATCTCTGA AGTCACCATC CGCTGAGCTG
121 TTCTTTGGCT TATATACAAG AGCTCTGCTC ACCACTACCA CTGCAATTGA ATTTTTTTTT
181 CTCTTCTGTT TACTTCCCAG AAAATTTTGC AAAATTTTTC ACATTCCCTG TCACATCGAA
241 TCTTTAGACG CATGCATGGA GTATTAAATA TAGACGAAAA TAAAAACTAA TTGCATAGTT
301 TGGTCGAAAT TAACGAGACG AATCTTTTGA ACCTAGTTAG TACATGATTG GACAATATTT
361 GTCAAATACA AACGAAAATG CTACGGTGTC CATTTCCTAA AATTTTTCAG AACTAAACAA
421 GGCCCTGATC TCGTTGTGGT TGGTGCTGGT GCAGACC
Predicted gene structure (within gDNA segment 19434 to 16405):
Exon 1 17091 16878 ( 214 n); cDNA 210 421 ( 212 n); score: 0.780
MATCH 21326110- 9301429+ 0.780 214 0.468 C
PGS_21326110-_9301429+ (17091 16878)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
| |||| ||| || | ||| | |||||| ||| || | || ||||||| | || |||||
C-AAAATTTT TC-ACATTCC CTGTCACATC GAATCTTTAG ACGCATGCAT GGAGTATTAA 267
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG ATAAATCTTT 16972
||||| || | |||||||||| |||||||| | |||| || | |||| | |||||||
ATATAGACGA AAATAAAAAC TAATTGCATA GTTTGGTCGA AATTAACGAG ACGAATCTTT 327
TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA GTGCTACAGT 16912
| |||||||| || | |||| || ||||||| |||||||||| | |||||||| |||||| ||
TGAACCTAGT TAGTACATGA TTGGACAATA TTTGTCAAAT ACAAACGAAA ATGCTACGGT 387
CTCAAAAACC AAAAAGTTTT CGAAACTAAA CAAG 16878
|| | || |||| |||| | ||||||| ||||
GTCCATTTCC TAAAATTTTT CAGAACTAAA CAAG 421
********************************************************************************
EST sequence 47 -strand (File: 9299558-)
1 AGTACAGAAT ACAGATCACA CGCTCTAGCT ACATTCTTCG ATGTATATAT GTATAATCAG
61 GTGTAGTAGC TTAGCTATCT AGCGACTGCG GCGGTACAAG CAGTAGGCGT TGAGGATGGT
121 GAGCAGGACG AGGATGACGG AGGCGACGAG GCCCAGGAAG ACGGAGCTGC CGATGTGACG
181 GCAGAAGTTG CCGTAGATGT TGCAGATCTT GGTCCAGTTG GTGTGTGTGT TGCCCTTGAG
241 CCCGATCCAC GCTACACCAC CCGCTGACCC CGTCGCTGAA GCCATGATAG CTGCGTATAA
301 CACATCGAGC AGAACAAGAA GGAAGAGAGT CTTGGTGGGA GAGGAGCCGG AGATGAGCTT
361 GAGCGAGGTG AGCGCCGTCA GCAAGCTGTA GAAGCACGTC ACGCACTGCG CCACCAGCAG
421 ATATCTACCA GAGCCAGCGA GCACGAAGCA CATGCATGCA TGCATGCGCA TGCAAATAAA
481 GAGTCATCGT GAGAGACCAT ATTTAGGCCT TGTTTAGTTG CCAAAATTTT TCAAGATTCT
541 CCGTCACATC GAATTTTGCG GTACATACAT GAAGCATTAA ATATAAACGA AAATAAAAAC
601 TAATTACGCA GTTTACCTGT AAATCGTGAG ACGAATCTTT TGATTCTAGT TAGTCTATGA
661 TTGGATAATA TTTGCCACAA ACAAACGAAA GTGCTACAGT AGCGAAATTC AAAATTTTTC
721 TCANACTAA
Predicted gene structure (within gDNA segment 20184 to 16467):
Exon 1 19888 19839 ( 50 n); cDNA 409 452 ( 44 n); score: 0.660
Intron 1 19838 19083 ( 756 n); Pd: 0.000 (s: 0.66), Pa: 0.062 (s: 0)
Exon 2 19082 19052 ( 31 n); cDNA 453 483 ( 31 n); score: 0.613
Intron 2 19051 18750 ( 302 n); Pd: 0.000 (s: 0), Pa: 0.484 (s: 0.57)
Exon 3 18749 18710 ( 40 n); cDNA 484 520 ( 37 n); score: 0.575
Intron 3 18709 17092 (1618 n); Pd: 0.000 (s: 0.57), Pa: 0.000 (s: 0.72)
Exon 4 17091 16883 ( 209 n); cDNA 521 729 ( 209 n); score: 0.794
MATCH 21326110- 9299558- 0.768 330 0.453 C
PGS_21326110-_9299558- (19888 19839,19082 19052,18749 18710,17091 16883)
Alignment (genomic DNA sequence = upper lines):
CTCCAGCAAG GCAGCAATTT GCCAGATCGA ATGGAGCATC GCAGTCATCA AGAACAGAAG 19829
| ||| | | |||| || | ||||| | | ||||| | | || || ||
CGCCA-CCA- GCAGATATCT ACCAGAGC-C AGCGAGCA-C GAAG-CA-CA .......... 452
AATTGTTGAG TGGTGGCCTA GGAAGAAGCC AAATGGGGGA GTGAGCAGAT TCATAATGGG 19769
.......... .......... .......... .......... .......... .......... 452
ATATATGGGG ACTAGAGGCT GTCACGACAA GAAAGGGAGA AGAAGCAGTG CAGAGAGTAT 19709
.......... .......... .......... .......... .......... .......... 452
TTGTACAGGA ACCACTTCAA CTAGGTTCCA CCAGTATGGG TTTCAAAGAA TGGAAGAAAT 19649
.......... .......... .......... .......... .......... .......... 452
GCCAAGGAAT TAGGCGAGGC ATACTAGATA ACAAATATAT ACTTTCTTAT TTTTCATTTT 19589
.......... .......... .......... .......... .......... .......... 452
AAACCTAATA GACCATAATG CACTTGCAGT ATGACACTTA AAGAAACAGT TAGGACTTCA 19529
.......... .......... .......... .......... .......... .......... 452
CAGCAATCAT TTTCCAACAC AGACTTGCTT CAAGTTCCCA TAAAAGTACC ATCACATTGA 19469
.......... .......... .......... .......... .......... .......... 452
AGAACTATGC ACAAGCACAA ATGGGTCCGC TTATGGTAAA CTGGCATGGA CAAGTTTCAT 19409
.......... .......... .......... .......... .......... .......... 452
CTGCCACTTC ATTTTGTTTG TTACATCGAT GTGAAGTTTC TTGAACTATG GATTTGAATG 19349
.......... .......... .......... .......... .......... .......... 452
GCAAAACAAA CACTGTTTAG AATACCGTGT TGCGCTTTGA CATGGTTCTT GTCAGCTGGG 19289
.......... .......... .......... .......... .......... .......... 452
CAGCTACACC AAAATCACCT GTTTTGCACA TTGTTGTGGC GCCACAGCAT GCCGACCACA 19229
.......... .......... .......... .......... .......... .......... 452
GAGTCAGGAC ATGCAGAAAT ATGGGTGCTA AGAATGCAAA CTAAAACTTT TGAAGAAAAC 19169
.......... .......... .......... .......... .......... .......... 452
AAATGTGCTT ACCCAACTTC ACCTCGCCTT GCTCAGTTAG AAGAATGTTG CCACCCTTAA 19109
.......... .......... .......... .......... .......... .......... 452
TATCTCTATG AACTTTAAAA ATGGAGTGCA GGTAAGCAAG GCCCTGGAAG AAAATAAGCA 19049
|||| | | ||| | | || || ||| |
.......... .......... ......TGCA TGCATGCATG CGCATGCAAA TAAAGAG... 483
CGCAAAAGTT CAATATCCAA ATACATTTAG TTGCCCAACA AGGCAGCAAA TACTTCAAAT 18989
.......... .......... .......... .......... .......... .......... 483
CTGATGCAAC TATGTTAGAA CCTTTAGTGC TTCTCTACAT ATATAAGCTA TTTGGGATTC 18929
.......... .......... .......... .......... .......... .......... 483
ATCAAGAGGC TCCTCTGTGA TGCCTATCAA ATCAGCAACA CTTCCACCAC CACAGTACTC 18869
.......... .......... .......... .......... .......... .......... 483
CATAACTATC TGTAAGTTGA GAATCGCATT TGCATCAAGC CCATGTTAAA TGACTCAAGA 18809
.......... .......... .......... .......... .......... .......... 483
AGTAGAGAAA TCTCCCAATG ATAGTTATTT CTTAATGTTA ATAAAATGGA TACTATCAGG 18749
.......... .......... .......... .......... .......... .........T 484
CTATTTGATT GTACCCATAG GTAGTCCTCT CCTTGGTAGC TTCCAAAGTA GCGGACAACA 18689
| ||| | | ||||| ||| ||| | || || |
CATCGTGAGA G-A-CCATAT TTAGGCCT-T GTTTAGTTG. .......... .......... 520
TTTGGATGGC TACACTGCTG CAGCATCTCA ATTTCTCCCC GTATGTCTTC ATATCCTTCT 18629
.......... .......... .......... .......... .......... .......... 520
TCCTGAAAAC CAAAGATACA TACTTATATT TTGGAAAAAT GCAACGACTC GGAAAACAGA 18569
.......... .......... .......... .......... .......... .......... 520
CAGCAACCAC ATTTATGAGA TTCTCTCACA ATTGAGCCCA TGCAAACAAA ATGCTCACAA 18509
.......... .......... .......... .......... .......... .......... 520
CAAAAGCAAT ATGGTTGCCA AATATGAAAT ATGTCTCGGG TGGCCTTTCA GAATATTCAC 18449
.......... .......... .......... .......... .......... .......... 520
AGAACTTTGT AATAGAAAAT TAGAAACTAA CCCCTTCTGT TAGTGAGATA ATCTTGACAG 18389
.......... .......... .......... .......... .......... .......... 520
CCACAAGCTC CTGCGTTCTG AGATCCCTTG CTTTGTACAC TGCACCATAT GAGCCTTTCC 18329
.......... .......... .......... .......... .......... .......... 520
CTGCATTCCC AATTGAATTT TGCATTTCGC AAAACAGCTC AAAGCTTCAG CCATTCTACA 18269
.......... .......... .......... .......... .......... .......... 520
AGTAGACATA CAGAACTAAT GAAACAATAA TTCCAGAGCA AGAGGCGCAC CAAGCTCATG 18209
.......... .......... .......... .......... .......... .......... 520
GAGCAGCTCG TACTTGGTGG AAGGATCCTC TCTGGTAACA CTGTCTGGCG CCGAGCTCAC 18149
.......... .......... .......... .......... .......... .......... 520
TGATGGCTTC CGCCTTGAAT GCTGCTGCTG TTGTTGCTGC ATCAGAGGCG ACGGTTGCCG 18089
.......... .......... .......... .......... .......... .......... 520
GAGCTCCTCT GTCTGCTCCA CCGCTGGACT CCAGAAAGAG GACCCGAAAC CCCCGCCGCC 18029
.......... .......... .......... .......... .......... .......... 520
GCCAGAAGCA GATTCATAGG AACTGGAACC CCCGCTGGTG TGGCGAATGA AGGTGCCAGA 17969
.......... .......... .......... .......... .......... .......... 520
GAACGACCCG CGGGGGCTCG ACGGGCTCCC TGGTCGGCGG ATGAATGTGC CGGAGACCGA 17909
.......... .......... .......... .......... .......... .......... 520
GTCCCGGGGG CTCGACGGGG TGCTAGTCCG GCGGATGAAT GTGCCAGAGA CGGATTCGTG 17849
.......... .......... .......... .......... .......... .......... 520
AGGGCTGGAC GAGCCCCCGG AGCGACGGAT GAATGTGCCT GAGGCGGACC CTCGAGGGCT 17789
.......... .......... .......... .......... .......... .......... 520
GGAGGAGGTC CCCCCCGAGC GTGCGGTGGA GTGGACGACG AAGGTAGAGT ATGGGTCGTC 17729
.......... .......... .......... .......... .......... .......... 520
ATCGGTAGCG CGGGGGCTGG AGCGCCGCAG ATCCAGGAAC GGAGATCGAG CGGAGGCCGG 17669
.......... .......... .......... .......... .......... .......... 520
GGCGCCGCTC TTGAAGACCA CCGTAGCGGA GAGGGAAGCA TCGTCGGGGT CGGAGGAGTA 17609
.......... .......... .......... .......... .......... .......... 520
GGCGTCCTCG TCTTCGTCAA AGGAGGGGCC GCCGAAGTCC TTGGGGAGCC GCTGGAGAAG 17549
.......... .......... .......... .......... .......... .......... 520
CGGAGGCAGC GAGGAGGGGT CTTCCTCCTC GTCTTCCTCC GCCCGCGTGG ACGGGCCCCT 17489
.......... .......... .......... .......... .......... .......... 520
GCCGCGCCTG CTGCCGCGGG CGTCGTCCTC GTCGTCATCG CCGTGGACGA CGAAGGTTGA 17429
.......... .......... .......... .......... .......... .......... 520
GTAGACGTCG TTTCTCTTGG GACGCGACCA CGGCGAGCGC GGGGAGAAAG CCATGGCGTG 17369
.......... .......... .......... .......... .......... .......... 520
CCACGCGAGG TGGGAGGAGA CGGTGAAGGT GCTCGTCGGG AATGGCAAAT GGGGAAAATT 17309
.......... .......... .......... .......... .......... .......... 520
GTTTAGTTGG AGCCAGTTCA CTCGAATCTG GCAAATATGG GTCGGGCTCG GATGGGCCAT 17249
.......... .......... .......... .......... .......... .......... 520
CCCATTCTAG GCCCACGTGA CATAGAGAAT CCGGTCAAAT TCTTCCTTCC CGCAGTCCCG 17189
.......... .......... .......... .......... .......... .......... 520
CTAGGCCCAC ACGACCACAC CCAGTCACCC GCAGCCACAG GCCGCAGAGA GCTTCCTCGA 17129
.......... .......... .......... .......... .......... .......... 520
AAGGAGCTTC TCTTTTTTCT CCACTCACCC CAAAAACCAA AAACTTTTCA AAATTTCTCA 17069
| | ||| |||||| | ||| |
.......... .......... .......... .......CCA AAATTTTTCA AGATTCTCCG 543
ACACATCAAA TATTACGACA CATGCATGAA GCATTAAATA TATACAAAAA TAAAAACTAA 17009
|||||| || | || || | ||| |||||| |||||||||| || || |||| ||||||||||
TCACATCGAA TTTTGCGGTA CATACATGAA GCATTAAATA TAAACGAAAA TAAAAACTAA 603
TTGCACAGTT TACCTATAAA TCGCGAGATA AATCTTTTAA ACCTAGTTAC TCTATGATTA 16949
|| | ||||| ||||| |||| ||| |||| |||||||| | ||||||| |||||||||
TTACGCAGTT TACCTGTAAA TCGTGAGACG AATCTTTTGA TTCTAGTTAG TCTATGATTG 663
GACAATATTT GTCAAATAAA AACGAAAGTG CTACAGTCTC AAAAACCAAA AAGTTTTCGA 16889
|| ||||||| | || | | | |||||||||| ||||||| | ||| |||| | ||| |
GATAATATTT GCCACAAACA AACGAAAGTG CTACAGTAGC GAAATTCAAA ATTTTTCTCA 723
AACTAA 16883
|||||
NACTAA 729
********************************************************************************
EST sequence 84 -strand (File: 11552500-)
1 TCATGCGCTG CGACACCAGG TGCCACTCGC GCGGGCCGTA CTGCCGGACG TACGCGCGCA
61 GGACGGCGTC TTCCTCAGGC CGCCAGCGCT GTCGCTCCTT CATCTGCACA GGCNCAGGCC
121 ATCGCCCATC CCACACCACC ACACCTCATA ATGCGCGCTG CTTCCGTTGC ATTTGCAAGA
181 AAAAGATCAA ATCTTTGATT AGCTCATTGC AAGAAAACCA GGAACATCAA ATCGTAACCG
241 TGGATAGTAG TATATATATT AGAAGTTACT AGTGAATCTT TAGCTCATCA GCTTTGAAAA
301 AAGAATGACC AAGAACAGAC TGAGGCTTTG TTTAGTTCGC AAAAATTTTC AAGATTCCTC
361 GTCACATCGA ATCTTTGGTC GCATGCATGG AGCATTAAAT ATAGACGAAA ATAAAAACTA
421 ATTGCACAGT TTACCTGTAA TTTGTGAGAT GAATCTTTTG AGCCTAGTTA CTCCGTGATT
481 GGACAATGTT TGTCAAATAA AAACGAAATG CTACAGTAAC CAAAAAAAGA AAAATCCTCG
541 TGC
Predicted gene structure (within gDNA segment 19294 to 16261):
Exon 1 17091 16887 ( 205 n); cDNA 340 543 ( 204 n); score: 0.810
MATCH 21326110- 11552500- 0.810 205 0.378 C
PGS_21326110-_11552500- (17091 16887)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
|||||| ||| |||| ||| | || |||||| ||| || | | ||||||| | ||||||||
CAAAAA-TTT TCAAGATTCC TCGTCACATC GAATCTTTGG TCGCATGCAT GGAGCATTAA 398
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG ATAAATCTTT 16972
||||| || | |||||||||| |||||||||| |||||||| | || | | ||| || |||||||
ATATAGACGA AAATAAAAAC TAATTGCACA GTTTACCTGT AATTTGTGAG ATGAATCTTT 458
TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA GTGCTACAGT 16912
| | |||||| ||||| ||| || |||||| |||||||||| |||||||||| |||||||||
TGAGCCTAGT TACTCCGTGA TTGGACAATG TTTGTCAAAT AAAAACGAAA -TGCTACAGT 517
-CTCAAAAAC CAAAAAGTTT TCGAAA 16887
|||||| |||| | |||
AACCAAAAAA AGAAAAATCC TCGTGC 543
********************************************************************************
EST sequence 85 -strand (File: 11552512-)
1 CCGCCAGCGC TGTCGCTCCT TCATCTGCAC AGGCCCAGGC CATCGCCCAT CCCACACCAC
61 CACACCTCAT AATGCGCGCT GCTTCCGTTG CATTTGCAAG AAAAAGATCA AATCTTTGAT
121 TAGCTCATTG CAAGAAAACC AGGAACATCA AATCGTAACC GTGGATAGTA GTATATATAT
181 TAGAAGTTAC TAGTGAATCT TTAGCTCATC AGCTTTGAAA AAAGAATGAC CAAGAACAGA
241 CTGAGGCTTT GTTTAGTTCG CAAAAATTTT CAAGATTCCT CGTCACATCG AATCTTTGGT
301 CGCATGCATG GAGCATTAAA TATAGACGAA AATAAAAACT AATTGCACAG TTTACCTGTA
361 ATTTGTGAGA TGAATCTTTT GAGCGTAGTT ACTCCGTGAT TGGACACATG TTTGTCAAAT
421 AAAAACGAAA TGCTACAGTA ACCAAAAAAA GAAAAATCCT CGTGC
Predicted gene structure (within gDNA segment 18899 to 16261):
Exon 1 17091 16887 ( 205 n); cDNA 261 465 ( 205 n); score: 0.795
MATCH 21326110- 11552512- 0.795 205 0.441 C
PGS_21326110-_11552512- (17091 16887)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
|||||| ||| |||| ||| | || |||||| ||| || | | ||||||| | ||||||||
CAAAAA-TTT TCAAGATTCC TCGTCACATC GAATCTTTGG TCGCATGCAT GGAGCATTAA 319
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG ATAAATCTTT 16972
||||| || | |||||||||| |||||||||| |||||||| | || | | ||| || |||||||
ATATAGACGA AAATAAAAAC TAATTGCACA GTTTACCTGT AATTTGTGAG ATGAATCTTT 379
TAAACCTAGT TACTCTATGA TTAGACA-AT ATTTGTCAAA TAAAAACGAA AGTGCTACAG 16913
| | | |||| ||||| ||| || |||| || ||||||||| |||||||||| | ||||||||
TGAGCGTAGT TACTCCGTGA TTGGACACAT GTTTGTCAAA TAAAAACGAA A-TGCTACAG 438
T-CTCAAAAA CCAAAAAGTT TTCGAAA 16887
| |||||| |||| | |||
TAACCAAAAA AAGAAAAATC CTCGTGC 465
********************************************************************************
EST sequence 56 -strand (File: 8088762-)
1 ATCTTGAGCC TAGTTAGTAC ATGGATTGGA TAATANTTTG TCAAATACAA ACGAAAGTGC
61 TACAGTACCT GTTTTGCAAA AATTTTGGAA CTAAACAAGA CCTTAGTTTC CAGCGAAATC
121 CAAAAAGTTT TCAAGATTCC CCGTAACATC GAATCTTGTG GCACATGCAT GAAACACTAA
181 ATATATTACA CAGTTTGTCT ATAAATCATG AGACGAATCT TTTGACTTTA GTTAGTTTAT
241 GATTGGACAA TATTTACCAC AAGCAAACGA AAGTGCTACA GTAGCGAAAT CCGAAATTTT
301 TTCGGATCAA GAGACCAGGA CAAGGAGCGA TGCGTTCTTG GCTGCGGCGC AGACGAGGCA
361 GGCGTNGACG GCGGCCTCGC ACGCGCGGCA CAGGCACAGG TGGCGGCACG GGAGCAGCAG
421 CACGCACGCC TCTCCGCCGC CGCACGACCT GCACTCCTCC ACCGCCCCCT GTGGTC
Predicted gene structure (within gDNA segment 17474 to 15045):
Exon 1 17104 16888 ( 217 n); cDNA 109 306 ( 198 n); score: 0.705
Intron 1 16887 15071 (1817 n); Pd: 0.000 (s: 0.74), Pa: 0.120 (s: 0)
Exon 2 15070 15045 ( 26 n); cDNA 307 330 ( 24 n); score: 0.577
MATCH 21326110- 8088762- 0.705 243 0.511 C
PGS_21326110-_8088762- (17104 16888,15070 15045)
Alignment (genomic DNA sequence = upper lines):
TCACCCCAAA AACCAAAAAC TTTTCAAAAT TTCTCAACAC ATCAAATATT ACGACACATG 17045
|| | | || | ||||||| ||||||| || | | | || ||| ||| || | ||||||
TC-CAGCGAA ATCCAAAAAG TTTTCAAGAT TCCCCGTAAC ATCGAATCTT GTGGCACATG 167
CATGAAGCAT TAAATATATA CAAAAATAAA AACTAATTGC ACAGTTTACC TATAAATCGC 16985
|||||| || ||||||||| | | | ||||||| | ||||||||
CATGAAACAC TAAATATAT- ---------- ---T-A---C ACAGTTTGTC TATAAATCAT 209
GAGATAAATC TTTTAAACCT AGTTACTCTA TGATTAGACA ATATTTGTCA AATAAAAACG 16925
|||| |||| |||| | | ||||| | || ||||| |||| |||||| || | |||||
GAGACGAATC TTTTGACTTT AGTTAGTTTA TGATTGGACA ATATTTACCA CAAGCAAACG 269
AAAGTGCTAC AGTCTCAAAA ACCAAAAAGT TTTCGAAACT AAACAAGGCC TGACACTTGC 16865
|||||||||| ||| | ||| || ||| | ||||| |
AAAGTGCTAC AGTAGCGAAA TCCGAAATTT TTTCGGA... .......... .......... 306
ACATCTTTTT TAAAAAATAT AAGGCCCTGT TTAGTTCCCA CCTAAAAAAT TTTCATCCAT 16805
.......... .......... .......... .......... .......... .......... 306
CACATTGAAT CTTTAGACAC ATACATAAAA CATTAAATGT AGATAAAAAA TAATTACACA 16745
.......... .......... .......... .......... .......... .......... 306
GTTTGGTTGA AAATCGCGAG ATGAATTTTT TAAGCCTAGT TAGTCCATGA TTAGCCTTAA 16685
.......... .......... .......... .......... .......... .......... 306
GTGCTACAGT AACCCACATG TGCTAATAAT AGATTAATTA TACTTAATAG ATTCGTCTTG 16625
.......... .......... .......... .......... .......... .......... 306
CAGTTTCCTG ACGAGTTATG TAATTTGTTT TTTTTATTAG TTTTTAAAAA CCCCTCCCGA 16565
.......... .......... .......... .......... .......... .......... 306
CATCCTTCCG ACATATCCGA TGTGACCTAA AAAATTTTCA TCTTCAATCT AAACATGCCC 16505
.......... .......... .......... .......... .......... .......... 306
TAAGTGAAAT GCAATAATGT GTTGTAGAAC TTTTATAGGC TATCACACAT GTGGTAGGGC 16445
.......... .......... .......... .......... .......... .......... 306
GAGACCATCA TTACATTCGA AGAAGAAATA TATTCCGCAA TCCACAATTG GGATAAAATA 16385
.......... .......... .......... .......... .......... .......... 306
GCAAATCATC GAAAAGGGCC TGACCAATAA GAATCAGGTC AAGGGTTCAT ACAACTGTCA 16325
.......... .......... .......... .......... .......... .......... 306
TCAGCTATGC AGAGCCAAAA AAAAAACATA TCATTGGGGT TTGCTATTAG ATCAATCAAT 16265
.......... .......... .......... .......... .......... .......... 306
TGCTTATGCA GTTTCCAATA AAAAAAATGC TTATGCAAAT TTCTCCCATA TACAACTAAA 16205
.......... .......... .......... .......... .......... .......... 306
GTTACATGAG CACATTCCTC CTGAAACGTA ATACTGAAAG CATACTTTTG ATTTGAATGG 16145
.......... .......... .......... .......... .......... .......... 306
TTGAATCTAC AAGCTATACG GTTTGTTTCC AGAATCTGAT CGATCTATCA TTTCCACAAA 16085
.......... .......... .......... .......... .......... .......... 306
TAACAAAAAC TGGTTCAACT GGGGAGTGGT CGAGCCATCT GGGAGCACCA GTGCTGCCAG 16025
.......... .......... .......... .......... .......... .......... 306
AGGGCAATCT TGCAACCTTT TCTGCAGTAA GTGCATCCCA GACGACAACC TGAAGAGTGA 15965
.......... .......... .......... .......... .......... .......... 306
CGTATCATAG TTAAGCTTGC TGAAATACAA ATATATATAC TGTTCTCAAT TTGGAATTTA 15905
.......... .......... .......... .......... .......... .......... 306
CCTCATTGTT TTGTTCATCA ACTGATAGAA CAAATTCTTC GGTTTCATTG AAGACAGCCT 15845
.......... .......... .......... .......... .......... .......... 306
GGATAGTAAG AACAGTTATT ATCATATTTA TTGTCTATCA TAGCAAGGTT AGGTATGTTG 15785
.......... .......... .......... .......... .......... .......... 306
TTATCCTAAG CTGCAAGCTC AAACCAGCCT ATTTTCAAAT TAAAGAATTG CAATATTTTG 15725
.......... .......... .......... .......... .......... .......... 306
TTTCCTAAAA TTTTGGGTAA AAATAATATA TATGGCACAC GAGTAAATTT AAATCAGGAA 15665
.......... .......... .......... .......... .......... .......... 306
AAAATAATAA TCTTATAGAA ACACAGAGAA ACTAACCTGA CAACGAAATT GTCTGCGAAT 15605
.......... .......... .......... .......... .......... .......... 306
GGCTCCTGCA TATTGCTTCA CAAGTCGTCC AGTGCCAACT TCCCATAACT TGACACAAGA 15545
.......... .......... .......... .......... .......... .......... 306
ATCTTTCCCA CAAGATAGGA CATACCTGAA AGAACGTAGT AAACTTCATA ACAGATAACC 15485
.......... .......... .......... .......... .......... .......... 306
AGAATACAGT GTGCAGTTTT ATGAAAGAAA TCCATGAACT ATCTAAGCAT ATACTTCGGG 15425
.......... .......... .......... .......... .......... .......... 306
TAGTCAAAGT TCACTACATC AATTTTTTAG ATCAATCTTA TATGCAAGTG CATTCACGCT 15365
.......... .......... .......... .......... .......... .......... 306
GCATATAACC ACATAAACAC TAGGCCTTTC AGAAGAAGTC TAAAAAGTGT TTATAGGCAA 15305
.......... .......... .......... .......... .......... .......... 306
GTTAGTTGTT TAGTGGTGAA ATAGTAGGGT AAAGGAGAAA GAGTTATTCG TGTTATAAAG 15245
.......... .......... .......... .......... .......... .......... 306
TTACGACACG TCTGAAACAC AGGAAATTAT CCAGGACATG TTATAAATCA TTCAGAATCA 15185
.......... .......... .......... .......... .......... .......... 306
CTACAAGATT CCCACATTCC AAACAGGGTT TGAAGTAGTT ACTGTCTTGA ATCATACAGC 15125
.......... .......... .......... .......... .......... .......... 306
ATATGCCTTT CTCTCTGTTC TTCAAACCAA ACAATGACTG GATTTTATCT TGAGGGAAGA 15065
||||
.......... .......... .......... .......... .......... ....TCAAGA 312
GCACCTTAGA CATGCTGGTA 15045
| ||| || || | | |
G-ACC-AGGA CAAGGAGCGA 330
********************************************************************************
EST sequence 86 -strand (File: 12617906-)
1 GTCGACAGCA GCTCATTTTT ATCAATATTG TTACCAAATC CTGCAACATT TCATCATTTC
61 GTCAACAATT CATTATTTTC ATTAGTATAA TAATTAGCGG CGCACACACA TCTATATAGT
121 TAATTTTCAC CAGGCAGCTA CTAGACCGAC TGTTAGAACG GGCTGTGCCC GCGCCGTGCC
181 GTGTGCCTGG GTGGTGGCCT AGGCACAGCC TGGTCCCTCA GGCCGGGCCG AGCCAAATCG
241 TCGGGCCACG GGCTGCATGA CCATATATAA TCAAATTGAA TTTTGCGGCA AAAACATAGA
301 ACATTAAATA TATTAAAAAA TAATTAATTA CACAGTATAT CTGTAACTTA CGAGATAAAT
361 CTTTTTAAGA CTAGTTAGTT TATGATTGGA CAATAATTAC TAAATACAAA CGAAAGTGTT
421 ATAATGTCAA AATCCAAAAA AAAATTTGGA TCTAATCGGA AAAAATGACT TATAGGCTTG
481 TTTAGTTCGC GAGCTACTGT AACACTTTCA TTTGTATTTA ACAGTTATTA TCTAATTATG
541 AACTAACCAG ACTTA
Predicted gene structure (within gDNA segment 21074 to 15407):
Exon 1 20470 20463 ( 8 n); cDNA 267 274 ( 8 n); score: 0.750
Intron 1 20462 17065 (3398 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68)
Exon 2 17064 16897 ( 168 n); cDNA 275 440 ( 166 n); score: 0.756
MATCH 21326110- 12617906- 0.756 176 0.317 C
PGS_21326110-_12617906- (20470 20463,17064 16897)
Alignment (genomic DNA sequence = upper lines):
AAAAGCAATG GATACCATCG AGAAGAGGGC ACCAACTGTT GTCGGCACAC TTTACTACGA 20411
| || |||
ATAATCAA.. .......... .......... .......... .......... .......... 274
AAGGGTGTGG GTGGGTGGGG TAGAACTATT TGTTATGGGC TCCTCAAGCA TTTATGTATT 20351
.......... .......... .......... .......... .......... .......... 274
GTCATGATTG GAAACTAGAG AAGTGTAGCA GCCAAGAAGG TGTACAAGAG AGAAAAAAAA 20291
.......... .......... .......... .......... .......... .......... 274
AAGAGTAGAA GTATCAGCAG CAGTAGAAAG GGGAGTAGAT TGTTTTTTTA TATTGGTTTC 20231
.......... .......... .......... .......... .......... .......... 274
TAGCTAGATA TTAATAAATT CCATAGTCAA TTCTTGTAGT ATGGTACTAC ATTATATCAT 20171
.......... .......... .......... .......... .......... .......... 274
CGTCCTAGGG AACCTGAACT TGTATTCTAC CCTGATTTTC CAAACTCTCA CTCACATACC 20111
.......... .......... .......... .......... .......... .......... 274
TCCTCCTAGA TCTAGCCAAT TATGAACTAT CAACTATCCT ACCTGATTTG GACTCCCTGT 20051
.......... .......... .......... .......... .......... .......... 274
GCACTAACTC TTCCTCTAGT GTCAAGCAGA GTCCATAACT TGGAGGTAAG ATGACGCCCT 19991
.......... .......... .......... .......... .......... .......... 274
GGATAATATT TCCCACTTGG AGGTTCATTG TGATTATGAT TTCCAACAGA CCTGTTGGTT 19931
.......... .......... .......... .......... .......... .......... 274
TGATATGCTA ATGTCACAGT AACCCTCTAC GTTCTTGAAT AGCTCCAGCA AGGCAGCAAT 19871
.......... .......... .......... .......... .......... .......... 274
TTGCCAGATC GAATGGAGCA TCGCAGTCAT CAAGAACAGA AGAATTGTTG AGTGGTGGCC 19811
.......... .......... .......... .......... .......... .......... 274
TAGGAAGAAG CCAAATGGGG GAGTGAGCAG ATTCATAATG GGATATATGG GGACTAGAGG 19751
.......... .......... .......... .......... .......... .......... 274
CTGTCACGAC AAGAAAGGGA GAAGAAGCAG TGCAGAGAGT ATTTGTACAG GAACCACTTC 19691
.......... .......... .......... .......... .......... .......... 274
AACTAGGTTC CACCAGTATG GGTTTCAAAG AATGGAAGAA ATGCCAAGGA ATTAGGCGAG 19631
.......... .......... .......... .......... .......... .......... 274
GCATACTAGA TAACAAATAT ATACTTTCTT ATTTTTCATT TTAAACCTAA TAGACCATAA 19571
.......... .......... .......... .......... .......... .......... 274
TGCACTTGCA GTATGACACT TAAAGAAACA GTTAGGACTT CACAGCAATC ATTTTCCAAC 19511
.......... .......... .......... .......... .......... .......... 274
ACAGACTTGC TTCAAGTTCC CATAAAAGTA CCATCACATT GAAGAACTAT GCACAAGCAC 19451
.......... .......... .......... .......... .......... .......... 274
AAATGGGTCC GCTTATGGTA AACTGGCATG GACAAGTTTC ATCTGCCACT TCATTTTGTT 19391
.......... .......... .......... .......... .......... .......... 274
TGTTACATCG ATGTGAAGTT TCTTGAACTA TGGATTTGAA TGGCAAAACA AACACTGTTT 19331
.......... .......... .......... .......... .......... .......... 274
AGAATACCGT GTTGCGCTTT GACATGGTTC TTGTCAGCTG GGCAGCTACA CCAAAATCAC 19271
.......... .......... .......... .......... .......... .......... 274
CTGTTTTGCA CATTGTTGTG GCGCCACAGC ATGCCGACCA CAGAGTCAGG ACATGCAGAA 19211
.......... .......... .......... .......... .......... .......... 274
ATATGGGTGC TAAGAATGCA AACTAAAACT TTTGAAGAAA ACAAATGTGC TTACCCAACT 19151
.......... .......... .......... .......... .......... .......... 274
TCACCTCGCC TTGCTCAGTT AGAAGAATGT TGCCACCCTT AATATCTCTA TGAACTTTAA 19091
.......... .......... .......... .......... .......... .......... 274
AAATGGAGTG CAGGTAAGCA AGGCCCTGGA AGAAAATAAG CACGCAAAAG TTCAATATCC 19031
.......... .......... .......... .......... .......... .......... 274
AAATACATTT AGTTGCCCAA CAAGGCAGCA AATACTTCAA ATCTGATGCA ACTATGTTAG 18971
.......... .......... .......... .......... .......... .......... 274
AACCTTTAGT GCTTCTCTAC ATATATAAGC TATTTGGGAT TCATCAAGAG GCTCCTCTGT 18911
.......... .......... .......... .......... .......... .......... 274
GATGCCTATC AAATCAGCAA CACTTCCACC ACCACAGTAC TCCATAACTA TCTGTAAGTT 18851
.......... .......... .......... .......... .......... .......... 274
GAGAATCGCA TTTGCATCAA GCCCATGTTA AATGACTCAA GAAGTAGAGA AATCTCCCAA 18791
.......... .......... .......... .......... .......... .......... 274
TGATAGTTAT TTCTTAATGT TAATAAAATG GATACTATCA GGCTATTTGA TTGTACCCAT 18731
.......... .......... .......... .......... .......... .......... 274
AGGTAGTCCT CTCCTTGGTA GCTTCCAAAG TAGCGGACAA CATTTGGATG GCTACACTGC 18671
.......... .......... .......... .......... .......... .......... 274
TGCAGCATCT CAATTTCTCC CCGTATGTCT TCATATCCTT CTTCCTGAAA ACCAAAGATA 18611
.......... .......... .......... .......... .......... .......... 274
CATACTTATA TTTTGGAAAA ATGCAACGAC TCGGAAAACA GACAGCAACC ACATTTATGA 18551
.......... .......... .......... .......... .......... .......... 274
GATTCTCTCA CAATTGAGCC CATGCAAACA AAATGCTCAC AACAAAAGCA ATATGGTTGC 18491
.......... .......... .......... .......... .......... .......... 274
CAAATATGAA ATATGTCTCG GGTGGCCTTT CAGAATATTC ACAGAACTTT GTAATAGAAA 18431
.......... .......... .......... .......... .......... .......... 274
ATTAGAAACT AACCCCTTCT GTTAGTGAGA TAATCTTGAC AGCCACAAGC TCCTGCGTTC 18371
.......... .......... .......... .......... .......... .......... 274
TGAGATCCCT TGCTTTGTAC ACTGCACCAT ATGAGCCTTT CCCTGCATTC CCAATTGAAT 18311
.......... .......... .......... .......... .......... .......... 274
TTTGCATTTC GCAAAACAGC TCAAAGCTTC AGCCATTCTA CAAGTAGACA TACAGAACTA 18251
.......... .......... .......... .......... .......... .......... 274
ATGAAACAAT AATTCCAGAG CAAGAGGCGC ACCAAGCTCA TGGAGCAGCT CGTACTTGGT 18191
.......... .......... .......... .......... .......... .......... 274
GGAAGGATCC TCTCTGGTAA CACTGTCTGG CGCCGAGCTC ACTGATGGCT TCCGCCTTGA 18131
.......... .......... .......... .......... .......... .......... 274
ATGCTGCTGC TGTTGTTGCT GCATCAGAGG CGACGGTTGC CGGAGCTCCT CTGTCTGCTC 18071
.......... .......... .......... .......... .......... .......... 274
CACCGCTGGA CTCCAGAAAG AGGACCCGAA ACCCCCGCCG CCGCCAGAAG CAGATTCATA 18011
.......... .......... .......... .......... .......... .......... 274
GGAACTGGAA CCCCCGCTGG TGTGGCGAAT GAAGGTGCCA GAGAACGACC CGCGGGGGCT 17951
.......... .......... .......... .......... .......... .......... 274
CGACGGGCTC CCTGGTCGGC GGATGAATGT GCCGGAGACC GAGTCCCGGG GGCTCGACGG 17891
.......... .......... .......... .......... .......... .......... 274
GGTGCTAGTC CGGCGGATGA ATGTGCCAGA GACGGATTCG TGAGGGCTGG ACGAGCCCCC 17831
.......... .......... .......... .......... .......... .......... 274
GGAGCGACGG ATGAATGTGC CTGAGGCGGA CCCTCGAGGG CTGGAGGAGG TCCCCCCCGA 17771
.......... .......... .......... .......... .......... .......... 274
GCGTGCGGTG GAGTGGACGA CGAAGGTAGA GTATGGGTCG TCATCGGTAG CGCGGGGGCT 17711
.......... .......... .......... .......... .......... .......... 274
GGAGCGCCGC AGATCCAGGA ACGGAGATCG AGCGGAGGCC GGGGCGCCGC TCTTGAAGAC 17651
.......... .......... .......... .......... .......... .......... 274
CACCGTAGCG GAGAGGGAAG CATCGTCGGG GTCGGAGGAG TAGGCGTCCT CGTCTTCGTC 17591
.......... .......... .......... .......... .......... .......... 274
AAAGGAGGGG CCGCCGAAGT CCTTGGGGAG CCGCTGGAGA AGCGGAGGCA GCGAGGAGGG 17531
.......... .......... .......... .......... .......... .......... 274
GTCTTCCTCC TCGTCTTCCT CCGCCCGCGT GGACGGGCCC CTGCCGCGCC TGCTGCCGCG 17471
.......... .......... .......... .......... .......... .......... 274
GGCGTCGTCC TCGTCGTCAT CGCCGTGGAC GACGAAGGTT GAGTAGACGT CGTTTCTCTT 17411
.......... .......... .......... .......... .......... .......... 274
GGGACGCGAC CACGGCGAGC GCGGGGAGAA AGCCATGGCG TGCCACGCGA GGTGGGAGGA 17351
.......... .......... .......... .......... .......... .......... 274
GACGGTGAAG GTGCTCGTCG GGAATGGCAA ATGGGGAAAA TTGTTTAGTT GGAGCCAGTT 17291
.......... .......... .......... .......... .......... .......... 274
CACTCGAATC TGGCAAATAT GGGTCGGGCT CGGATGGGCC ATCCCATTCT AGGCCCACGT 17231
.......... .......... .......... .......... .......... .......... 274
GACATAGAGA ATCCGGTCAA ATTCTTCCTT CCCGCAGTCC CGCTAGGCCC ACACGACCAC 17171
.......... .......... .......... .......... .......... .......... 274
ACCCAGTCAC CCGCAGCCAC AGGCCGCAGA GAGCTTCCTC GAAAGGAGCT TCTCTTTTTT 17111
.......... .......... .......... .......... .......... .......... 274
CTCCACTCAC CCCAAAAACC AAAAACTTTT CAAAATTTCT CAACACATCA AATATTACGA 17051
|| ||| || ||
.......... .......... .......... .......... ......ATTG AATTTTGCGG 288
CACATGCATG AAGCATTAAA TATATACAAA AATAAAAACT AATTGCACAG TTTACCTATA 16991
|| | ||| | ||||||| ||||| ||| ||| || | |||| ||||| | || || ||
CAAAAACATA GAACATTAAA TATATTAAAA AAT---AATT AATTACACAG TATATCTGTA 345
AATCGCGAGA TAAATC-TTT TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT 16932
| | ||||| |||||| ||| ||| ||||| || | ||||| || ||||||| || ||||
ACTTACGAGA TAAATCTTTT TAAGACTAGT TAGTTTATGA TTGGACAATA ATTACTAAAT 405
AAAAACGAAA GTGCTACAGT CTCAAAAACC AAAAA 16897
| |||||||| ||| || | | |||||| || |||||
ACAAACGAAA GTGTTATAAT GTCAAAATCC AAAAA 440
********************************************************************************
EST sequence 39 -strand (File: 6673837-)
1 TAAAAATAAT AACTAATTGC ACAATTTGTC TGTAATTTAC GAGACAAATC TTTTGAGCCT
61 AGTTAGTCCA TGATTGGACA ACATTTGTCA AATACGAACG AAAGTGCTAC AGTGTGCATT
121 GACACAGCAG TTCTGATTCT GAGTATATCT CTGGTGTTCA GGCATCTAGA AGAAGCCGTG
181 AGAAAACCTA GAGCTTGTTG CTGCGCTTTG ATCTCCATAT CCTATTGATT GGGTCAGGTG
241 GTTGGAAATT CTGGAGTTGG CAGTGAGAAC TTTTTGAATG AACAATCCTA TGAACCTTAG
301 ATGTGATGCC ATTTGTCTCT TTCATCATTC TGAATTCTGG TTCCTTGAAT CAATCACTGT
361 AGTTGTTGAT CTTCTTGAAA AGCATGTTTA GCCAGTGGGA GATGAACTGC TCTTGGATTT
421 CATTGTGACA ACTGGTAACT ATTTTTCATG GTACAACAAA GAATTCGCTA CCTATAACAA
481 TTGTAAAATA AGCAGCCGGG CAAACCCTCT GTTAGTAGTA CTTACAGGTT TTGGGCTTTC
541 AACCGGCAAG CTCACTAATC GG
Predicted gene structure (within gDNA segment 17369 to 14367):
Exon 1 17024 16910 ( 115 n); cDNA 1 115 ( 115 n); score: 0.835
Intron 1 16909 16467 ( 443 n); Pd: 0.000 (s: 0.86), Pa: 0.878 (s: 0)
Exon 2 16466 16452 ( 15 n); cDNA 116 130 ( 15 n); score: 0.600
Intron 2 16451 15035 (1417 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0)
Exon 3 15034 15023 ( 12 n); cDNA 131 141 ( 11 n); score: 0.750
Intron 3 15022 14402 ( 621 n); Pd: 0.467 (s: 0), Pa: 0.393 (s: 0)
Exon 4 14401 14367 ( 35 n); cDNA 142 175 ( 34 n); score: 0.657
MATCH 21326110- 6673837- 0.835 177 0.315 C
PGS_21326110-_6673837- (17024 16910,16466 16452,15034 15023,14401 14367)
Alignment (genomic DNA sequence = upper lines):
CAAAAATAAA AACTAATTGC ACAGTTTACC TATAAATCGC GAGATAAATC TTTTAAACCT 16965
|||||||| |||||||||| ||| ||| | | ||| | | |||| ||||| |||| | |||
TAAAAATAAT AACTAATTGC ACAATTTGTC TGTAATTTAC GAGACAAATC TTTTGAGCCT 60
AGTTACTCTA TGATTAGACA ATATTTGTCA AATAAAAACG AAAGTGCTAC AGTCTCAAAA 16905
||||| || | ||||| |||| | |||||||| |||| |||| |||||||||| ||| |
AGTTAGTCCA TGATTGGACA ACATTTGTCA AATACGAACG AAAGTGCTAC AGTGT..... 115
ACCAAAAAGT TTTCGAAACT AAACAAGGCC TGACACTTGC ACATCTTTTT TAAAAAATAT 16845
.......... .......... .......... .......... .......... .......... 115
AAGGCCCTGT TTAGTTCCCA CCTAAAAAAT TTTCATCCAT CACATTGAAT CTTTAGACAC 16785
.......... .......... .......... .......... .......... .......... 115
ATACATAAAA CATTAAATGT AGATAAAAAA TAATTACACA GTTTGGTTGA AAATCGCGAG 16725
.......... .......... .......... .......... .......... .......... 115
ATGAATTTTT TAAGCCTAGT TAGTCCATGA TTAGCCTTAA GTGCTACAGT AACCCACATG 16665
.......... .......... .......... .......... .......... .......... 115
TGCTAATAAT AGATTAATTA TACTTAATAG ATTCGTCTTG CAGTTTCCTG ACGAGTTATG 16605
.......... .......... .......... .......... .......... .......... 115
TAATTTGTTT TTTTTATTAG TTTTTAAAAA CCCCTCCCGA CATCCTTCCG ACATATCCGA 16545
.......... .......... .......... .......... .......... .......... 115
TGTGACCTAA AAAATTTTCA TCTTCAATCT AAACATGCCC TAAGTGAAAT GCAATAATGT 16485
.......... .......... .......... .......... .......... .......... 115
GTTGTAGAAC TTTTATAGGC TATCACACAT GTGGTAGGGC GAGACCATCA TTACATTCGA 16425
|| | ||||| |
.......... ........GC ATTGACACAG CAG....... .......... .......... 130
AGAAGAAATA TATTCCGCAA TCCACAATTG GGATAAAATA GCAAATCATC GAAAAGGGCC 16365
.......... .......... .......... .......... .......... .......... 130
TGACCAATAA GAATCAGGTC AAGGGTTCAT ACAACTGTCA TCAGCTATGC AGAGCCAAAA 16305
.......... .......... .......... .......... .......... .......... 130
AAAAAACATA TCATTGGGGT TTGCTATTAG ATCAATCAAT TGCTTATGCA GTTTCCAATA 16245
.......... .......... .......... .......... .......... .......... 130
AAAAAAATGC TTATGCAAAT TTCTCCCATA TACAACTAAA GTTACATGAG CACATTCCTC 16185
.......... .......... .......... .......... .......... .......... 130
CTGAAACGTA ATACTGAAAG CATACTTTTG ATTTGAATGG TTGAATCTAC AAGCTATACG 16125
.......... .......... .......... .......... .......... .......... 130
GTTTGTTTCC AGAATCTGAT CGATCTATCA TTTCCACAAA TAACAAAAAC TGGTTCAACT 16065
.......... .......... .......... .......... .......... .......... 130
GGGGAGTGGT CGAGCCATCT GGGAGCACCA GTGCTGCCAG AGGGCAATCT TGCAACCTTT 16005
.......... .......... .......... .......... .......... .......... 130
TCTGCAGTAA GTGCATCCCA GACGACAACC TGAAGAGTGA CGTATCATAG TTAAGCTTGC 15945
.......... .......... .......... .......... .......... .......... 130
TGAAATACAA ATATATATAC TGTTCTCAAT TTGGAATTTA CCTCATTGTT TTGTTCATCA 15885
.......... .......... .......... .......... .......... .......... 130
ACTGATAGAA CAAATTCTTC GGTTTCATTG AAGACAGCCT GGATAGTAAG AACAGTTATT 15825
.......... .......... .......... .......... .......... .......... 130
ATCATATTTA TTGTCTATCA TAGCAAGGTT AGGTATGTTG TTATCCTAAG CTGCAAGCTC 15765
.......... .......... .......... .......... .......... .......... 130
AAACCAGCCT ATTTTCAAAT TAAAGAATTG CAATATTTTG TTTCCTAAAA TTTTGGGTAA 15705
.......... .......... .......... .......... .......... .......... 130
AAATAATATA TATGGCACAC GAGTAAATTT AAATCAGGAA AAAATAATAA TCTTATAGAA 15645
.......... .......... .......... .......... .......... .......... 130
ACACAGAGAA ACTAACCTGA CAACGAAATT GTCTGCGAAT GGCTCCTGCA TATTGCTTCA 15585
.......... .......... .......... .......... .......... .......... 130
CAAGTCGTCC AGTGCCAACT TCCCATAACT TGACACAAGA ATCTTTCCCA CAAGATAGGA 15525
.......... .......... .......... .......... .......... .......... 130
CATACCTGAA AGAACGTAGT AAACTTCATA ACAGATAACC AGAATACAGT GTGCAGTTTT 15465
.......... .......... .......... .......... .......... .......... 130
ATGAAAGAAA TCCATGAACT ATCTAAGCAT ATACTTCGGG TAGTCAAAGT TCACTACATC 15405
.......... .......... .......... .......... .......... .......... 130
AATTTTTTAG ATCAATCTTA TATGCAAGTG CATTCACGCT GCATATAACC ACATAAACAC 15345
.......... .......... .......... .......... .......... .......... 130
TAGGCCTTTC AGAAGAAGTC TAAAAAGTGT TTATAGGCAA GTTAGTTGTT TAGTGGTGAA 15285
.......... .......... .......... .......... .......... .......... 130
ATAGTAGGGT AAAGGAGAAA GAGTTATTCG TGTTATAAAG TTACGACACG TCTGAAACAC 15225
.......... .......... .......... .......... .......... .......... 130
AGGAAATTAT CCAGGACATG TTATAAATCA TTCAGAATCA CTACAAGATT CCCACATTCC 15165
.......... .......... .......... .......... .......... .......... 130
AAACAGGGTT TGAAGTAGTT ACTGTCTTGA ATCATACAGC ATATGCCTTT CTCTCTGTTC 15105
.......... .......... .......... .......... .......... .......... 130
TTCAAACCAA ACAATGACTG GATTTTATCT TGAGGGAAGA GCACCTTAGA CATGCTGGTA 15045
.......... .......... .......... .......... .......... .......... 130
GCTCGCTTAC CTCTCATCTC TGGTGAAAAT TGCGCTAGTA GCTTCTGCAG ATCCATGTGC 14985
||| || || ||
.......... TTCTGAT-TC TG........ .......... .......... .......... 141
TCCAATAATA GGTCGAACAC ATTCAGCAGA TACTCCATCC CAAATGCGCA GAGAACCATC 14925
.......... .......... .......... .......... .......... .......... 141
TTTAGAAGCA GTCACATACA AGCTCCCAGT ACAGGAGTAG CGTACCTGGC AGCAACATCA 14865
.......... .......... .......... .......... .......... .......... 141
GTAAGCATGG CTGGCGGAGA ACTTTGATGA GAATATAACC AATGCAATCT AATGCTTGTG 14805
.......... .......... .......... .......... .......... .......... 141
AATCAGAAGG AAAGAGAAAA GCTACCTGGT TAATGGGAGA ACTAGAATCC TGTGCATTTG 14745
.......... .......... .......... .......... .......... .......... 141
CTGATAAGTA GCATGTAAAA GTATTTATAT CATATAAATG AGCAACTGGG TGATCAGTCC 14685
.......... .......... .......... .......... .......... .......... 141
CTGCAAATAA TTTTATCAGT GTCACTTGCT TCCAAATATA TGAAAATGAG TTTTTTTAAA 14625
.......... .......... .......... .......... .......... .......... 141
AAAAATACAT ATTTGAATGT TAATATTTGA CTATATGTAA GAAGAAAATT CCATACGATA 14565
.......... .......... .......... .......... .......... .......... 141
TGCTTGCAGT ATTTTTCAAA TGCCCACGAG ACAGAAACTG TTGATCCAGG AACGAAATCC 14505
.......... .......... .......... .......... .......... .......... 141
AAATTCTTAA GCCCAAATAT CAAATTGTTT TGGTGAAATG ATTAAATTAC TTTACAGATA 14445
.......... .......... .......... .......... .......... .......... 141
ACAACTGAAA ACATGTTAAC AACTTATAAT GCATAAAAAT CAGAGCATAT CAAACTGAT- 14386
|| |||| | ||| |
.......... .......... .......... .......... ...AGTATAT C--TCTGGTG 156
ATCAGACATC AAGAATCAG 14367
|||| |||| |||| ||
TTCAGGCATC TAGAAGAAG 175
********************************************************************************
EST sequence 55 -strand (File: 12501667-)
1 AGAGCATTAA ATATATATAA AAATAATAAC TAATTGCACA ATTTGTCTGT AATTTACGAG
61 ACAAATCTTT TGAGCCTAGT TAGTCCATGA TTGGACAACA TTTGTCAAAT ACGAACGAAA
121 GTGCTACAGT GTGCATTGAC ACAGCAGTTC TGATTCTGAG TATATCTCTG GTGTTCAGGC
181 ATCTAGAAGA AGCCGTGAGA AAACCTAGAG CTTGTTGCTG CGCTTTGATC TCCATATCCT
241 ATTGATTGGG TCAGGTGGTT GGAAATTCTG GAGTTGGCAG TGAGAACTTT TTGAATGAAC
301 AATCCTATGA ACCTTAGATG TGATGCCATT TGTCTCTTTC ATCATTCTGA ATTCTGGTTC
361 CTTGAATCAA
Predicted gene structure (within gDNA segment 17354 to 15412):
Exon 1 17041 16912 ( 130 n); cDNA 1 130 ( 130 n); score: 0.846
MATCH 21326110- 12501667- 0.846 130 0.351 C
PGS_21326110-_12501667- (17041 16912)
Alignment (genomic DNA sequence = upper lines):
GAAGCATTAA ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG 16982
|||||||| ||||||| || |||||| ||| |||||||||| ||| || | || | ||||
AGAGCATTAA ATATATATAA AAATAATAAC TAATTGCACA ATTTGTCTGT AATTTACGAG 60
ATAAATCTTT TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA 16922
| |||||||| | | |||||| || || |||| || ||||| | |||||||||| | |||||||
ACAAATCTTT TGAGCCTAGT TAGTCCATGA TTGGACAACA TTTGTCAAAT ACGAACGAAA 120
GTGCTACAGT 16912
||||||||||
GTGCTACAGT 130
********************************************************************************
EST sequence 48 -strand (File: 6859140-)
1 TCTCCACAGT TTTTTTGACT GATAAGTCAT GACAAAAATC AATGATTGTT GTGAGAGAAA
61 AACATTATTG AATGACGATA GATTTGGCTG ATAAGCTCAA ATAAATAGGC TTGACCAAAT
121 TACGGTGAGT AGTGATTGAT ATGGTGTTTC GAGCATTGTT GTATGTATGA TTTATGTTCA
181 GTTGTTCCTG ATTATATTTC CCGCAAACTG GAGGCAGCGG AAAAGTGGCT TTCAGGGAAA
241 ACCGGAGGCA GCGGAAAACT ACGGCGTTGT TTAGTTTCCA AATCTTTTCA AGATTTTTCG
301 TCACATCGAA TCTTGCGGCA CATGCATGAA ACACTGAATA TAGATAAAAA AGATAACTAA
361 TTGCACAATT TACCTGTAAT TTGCGAGATG AATTTTTTAA ACCTAGTTAG TCTATAATTA
421 AATAATAATT GTCAAATAAA ACCAAAAGTA CTACAATAAG CCTACCTTCC AAAC
Predicted gene structure (within gDNA segment 18945 to 16463):
Exon 1 17091 16914 ( 178 n); cDNA 278 455 ( 178 n); score: 0.820
MATCH 21326110- 6859140- 0.820 178 0.376 C
PGS_21326110-_6859140- (17091 16914)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
| ||| |||| |||| |||| || |||||| ||| || || ||||||||| ||| || | |
CCAAATCTTT TCAAGATTTT TCGTCACATC GAATCTTGCG GCACATGCAT GAAACACTGA 337
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG ATAAATCTTT 16972
||||| | || ||| | ||| |||||||||| ||||||| | || | ||||| || ||| |||
ATATAGATAA AAAAGATAAC TAATTGCACA ATTTACCTGT AATTTGCGAG ATGAATTTTT 397
TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA GTGCTACA 16914
|||||||||| || ||||| | ||| | |||| ||||||||| |||| | ||| || |||||
TAAACCTAGT TAGTCTATAA TTAAATAATA ATTGTCAAAT AAAACCAAAA GTACTACA 455
********************************************************************************
EST sequence 50 -strand (File: 6859177-)
1 TCCACAGTTT TTTTGACTGA TAAGTCATGA CAAAAATCAA TGATTGTTGT GAGAGAAAAA
61 CATTATTGAA TGACGATAGA TTTGGCTGAT AAGCTCAAAT AAATAGGCTT GACCAAATTA
121 CGGTGAGTAG TGATTGATAT GGTGTTTCGA GCATTGTTGT ATGTATGATT TATGTTCAGT
181 TGTTCCTGAT TATATTTCCC GCAAACTGGA GGCAGCGGAA AAGTGGCTTT CAGGGAAAAC
241 CGGAGGCAGC GGAAAACTAC GGCGTTGTTT AGTTTCCAAA TCTTTTCAAG ATTTTTCGTC
301 ACATCGAATC TTGCGGCACA TGCATGAAAC ACTGAATATA GATAAAAAAG ATAACTAATT
361 GCACAATTTA CCTGTAATTT GCGAGATGAA TTTTTTAAAC CTAGTTAGTC TATAATTAAA
421 TAATAATTGT CAAATAAAAC CAAAAGTACT ACAATAAGCC TACCTTCCAA AC
Predicted gene structure (within gDNA segment 18935 to 16463):
Exon 1 17091 16914 ( 178 n); cDNA 276 453 ( 178 n); score: 0.820
MATCH 21326110- 6859177- 0.820 178 0.377 C
PGS_21326110-_6859177- (17091 16914)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
| ||| |||| |||| |||| || |||||| ||| || || ||||||||| ||| || | |
CCAAATCTTT TCAAGATTTT TCGTCACATC GAATCTTGCG GCACATGCAT GAAACACTGA 335
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG ATAAATCTTT 16972
||||| | || ||| | ||| |||||||||| ||||||| | || | ||||| || ||| |||
ATATAGATAA AAAAGATAAC TAATTGCACA ATTTACCTGT AATTTGCGAG ATGAATTTTT 395
TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA GTGCTACA 16914
|||||||||| || ||||| | ||| | |||| ||||||||| |||| | ||| || |||||
TAAACCTAGT TAGTCTATAA TTAAATAATA ATTGTCAAAT AAAACCAAAA GTACTACA 453
********************************************************************************
EST sequence 110 +strand (File: 24978904+)
1 GGCACGAGGG TTTGTTGTTG CTGCTAGTGG AACAATTTCC TCAGCTCATA GGATGCACAC
61 GATTGATCGA GCTGAAGCAA ATCACCGGCA AGGCTGGGGT TGATGCGCGG ATCGTTGGCA
121 TGATGATGGA GGCTTACCAG CCGCTTTGAT CCATCAAGGA TCGCTCTTTG CTATTCAGAA
181 AGGCTACAGG CTCATTGCAG TTATGCCAGC TAAATATTTG CTTGACAAGC TGATCTTGCT
241 GAGATTCATG GGTGCTGAGT TGTACTTAAC CGGTATGATT AGTTGAAGAA AGTTACGGTA
301 TCACCTTAAT TGCTTTTTTC AGTCAAATTT CCTTGGTTAA GGAATTTTAT GGGTGGCCTT
361 CTTCCTTTGG TGTACTGTAT GTGCAGATCC GGCCCTTGGC TTTGCGGGCA TGTTTGACAA
421 AGTTGAACAG CTCCGAGAAC AACTGCCAAA TGTACTTGTT CTGAATCAAG TTACTAAAAA
481 TTTGCAAAAT TTTTTCAGAT TCCCCGTCAC ATCGAATGTT TAGACGTATG CATGGAGTAT
541 TAAATATAGA TGAAAATAAA AACTAATTAC ACAGTTTGGT CGGAATTGAT CAGACGAATC
601 TTTTGAGCCT AGTTAGTCCA TAATTGGACA ATATTTGTCA AATACAAACG AAAATGCTAC
661 TATTCCTATT TTGCAAAATT TTTTGGAAGT AAACAAGGCC TAAGAGAGCA AATTCTG
Predicted gene structure (within gDNA segment 18480 to 16489):
Exon 1 17091 16914 ( 178 n); cDNA 485 661 ( 177 n); score: 0.764
MATCH 21326110- 24978904+ 0.764 178 0.248 C
PGS_21326110-_24978904+ (17091 16914)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
||||| ||| || | ||| | | |||||| ||| || | || |||||| | || |||||
CAAAATTTTT TC-AGATTCC CCGTCACATC GAATGTTTAG ACGTATGCAT GGAGTATTAA 543
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG ATAAATCTTT 16972
||||| | | |||||||||| ||||| |||| |||| || | || | |||||||
ATATAGATGA AAATAAAAAC TAATTACACA GTTTGGTCGG AATTGATCAG ACGAATCTTT 603
TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA GTGCTACA 16914
| | |||||| || || || | || ||||||| |||||||||| | |||||||| ||||||
TGAGCCTAGT TAGTCCATAA TTGGACAATA TTTGTCAAAT ACAAACGAAA ATGCTACT 661
********************************************************************************
EST sequence 44 -strand (File: 6675384-)
1 TGTGTGATGC TCGATAAGTG GTGCACTGCA GAGAAATATA ATGGGCCAAC GGTGCATCAT
61 TTTACAAGTT TAGGCCTGCC TTGTTTAGTC TTTTTAAAAT TCTCCGTCAC ATCGAATTTT
121 ACGACATGAA ATATCAAATA TAGAGGAAAA TAAAAATTAA TTGCACAGTT TACCTGTAAA
181 TCCGAGATAA ATCTTTTGAG CCTAGTTAGT CTATAATTAG ACAATAATTA CCAAATAAAA
241 GCAAAAGTAA TACATGATGC ATTGCTTAAC AAGTTTAGAG AACTAGAATT ACAGACTCAA
301 AAGATTCCTC GTGCCGAATT CGGCACGAGG GAGAGAACTA GTCTCGAGTT TTTTTTTTTT
361 TTTTTTTTTT TTTGGAGAAA CAAAGCTTTG TTATTAGGAA CAGATTACAA ACTTCACATA
421 TTCCACGCAA CCGATCGATT A
Predicted gene structure (within gDNA segment 18101 to 13697):
Exon 1 17084 16914 ( 171 n); cDNA 91 254 ( 164 n); score: 0.807
Intron 1 16913 13778 (3136 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0)
Exon 2 13777 13753 ( 25 n); cDNA 255 277 ( 23 n); score: 0.680
MATCH 21326110- 6675384- 0.807 196 0.444 C
PGS_21326110-_6675384- (17084 16914,13777 13753)
Alignment (genomic DNA sequence = upper lines):
TTTTCAAAAT TTCTCAACAC ATCAAATATT ACGACACATG CATGAAGCAT TAAATATATA 17025
|||| ||||| | | ||| ||| ||| || ||| ||||| | || || ||||||| |
TTTTTAAAAT TCTCCGTCAC ATCGAATTTT ACG--ACATG -A--AA-TAT CAAATATAGA 144
CAAAAATAAA AACTAATTGC ACAGTTTACC TATAAATCGC GAGATAAATC TTTTAAACCT 16965
|||||||| || ||||||| |||||||||| | |||||| | |||||||||| |||| | |||
GGAAAATAAA AATTAATTGC ACAGTTTACC TGTAAATC-C GAGATAAATC TTTTGAGCCT 203
AGTTACTCTA TGATTAGACA ATATTTGTCA AATAAAAACG AAAGTGCTAC AGTCTCAAAA 16905
||||| |||| | |||||||| ||| || || ||||||| | ||||| ||| |
AGTTAGTCTA TAATTAGACA ATAATTACCA AATAAAAGCA AAAGTAATAC A......... 254
ACCAAAAAGT TTTCGAAACT AAACAAGGCC TGACACTTGC ACATCTTTTT TAAAAAATAT 16845
.......... .......... .......... .......... .......... .......... 254
AAGGCCCTGT TTAGTTCCCA CCTAAAAAAT TTTCATCCAT CACATTGAAT CTTTAGACAC 16785
.......... .......... .......... .......... .......... .......... 254
ATACATAAAA CATTAAATGT AGATAAAAAA TAATTACACA GTTTGGTTGA AAATCGCGAG 16725
.......... .......... .......... .......... .......... .......... 254
ATGAATTTTT TAAGCCTAGT TAGTCCATGA TTAGCCTTAA GTGCTACAGT AACCCACATG 16665
.......... .......... .......... .......... .......... .......... 254
TGCTAATAAT AGATTAATTA TACTTAATAG ATTCGTCTTG CAGTTTCCTG ACGAGTTATG 16605
.......... .......... .......... .......... .......... .......... 254
TAATTTGTTT TTTTTATTAG TTTTTAAAAA CCCCTCCCGA CATCCTTCCG ACATATCCGA 16545
.......... .......... .......... .......... .......... .......... 254
TGTGACCTAA AAAATTTTCA TCTTCAATCT AAACATGCCC TAAGTGAAAT GCAATAATGT 16485
.......... .......... .......... .......... .......... .......... 254
GTTGTAGAAC TTTTATAGGC TATCACACAT GTGGTAGGGC GAGACCATCA TTACATTCGA 16425
.......... .......... .......... .......... .......... .......... 254
AGAAGAAATA TATTCCGCAA TCCACAATTG GGATAAAATA GCAAATCATC GAAAAGGGCC 16365
.......... .......... .......... .......... .......... .......... 254
TGACCAATAA GAATCAGGTC AAGGGTTCAT ACAACTGTCA TCAGCTATGC AGAGCCAAAA 16305
.......... .......... .......... .......... .......... .......... 254
AAAAAACATA TCATTGGGGT TTGCTATTAG ATCAATCAAT TGCTTATGCA GTTTCCAATA 16245
.......... .......... .......... .......... .......... .......... 254
AAAAAAATGC TTATGCAAAT TTCTCCCATA TACAACTAAA GTTACATGAG CACATTCCTC 16185
.......... .......... .......... .......... .......... .......... 254
CTGAAACGTA ATACTGAAAG CATACTTTTG ATTTGAATGG TTGAATCTAC AAGCTATACG 16125
.......... .......... .......... .......... .......... .......... 254
GTTTGTTTCC AGAATCTGAT CGATCTATCA TTTCCACAAA TAACAAAAAC TGGTTCAACT 16065
.......... .......... .......... .......... .......... .......... 254
GGGGAGTGGT CGAGCCATCT GGGAGCACCA GTGCTGCCAG AGGGCAATCT TGCAACCTTT 16005
.......... .......... .......... .......... .......... .......... 254
TCTGCAGTAA GTGCATCCCA GACGACAACC TGAAGAGTGA CGTATCATAG TTAAGCTTGC 15945
.......... .......... .......... .......... .......... .......... 254
TGAAATACAA ATATATATAC TGTTCTCAAT TTGGAATTTA CCTCATTGTT TTGTTCATCA 15885
.......... .......... .......... .......... .......... .......... 254
ACTGATAGAA CAAATTCTTC GGTTTCATTG AAGACAGCCT GGATAGTAAG AACAGTTATT 15825
.......... .......... .......... .......... .......... .......... 254
ATCATATTTA TTGTCTATCA TAGCAAGGTT AGGTATGTTG TTATCCTAAG CTGCAAGCTC 15765
.......... .......... .......... .......... .......... .......... 254
AAACCAGCCT ATTTTCAAAT TAAAGAATTG CAATATTTTG TTTCCTAAAA TTTTGGGTAA 15705
.......... .......... .......... .......... .......... .......... 254
AAATAATATA TATGGCACAC GAGTAAATTT AAATCAGGAA AAAATAATAA TCTTATAGAA 15645
.......... .......... .......... .......... .......... .......... 254
ACACAGAGAA ACTAACCTGA CAACGAAATT GTCTGCGAAT GGCTCCTGCA TATTGCTTCA 15585
.......... .......... .......... .......... .......... .......... 254
CAAGTCGTCC AGTGCCAACT TCCCATAACT TGACACAAGA ATCTTTCCCA CAAGATAGGA 15525
.......... .......... .......... .......... .......... .......... 254
CATACCTGAA AGAACGTAGT AAACTTCATA ACAGATAACC AGAATACAGT GTGCAGTTTT 15465
.......... .......... .......... .......... .......... .......... 254
ATGAAAGAAA TCCATGAACT ATCTAAGCAT ATACTTCGGG TAGTCAAAGT TCACTACATC 15405
.......... .......... .......... .......... .......... .......... 254
AATTTTTTAG ATCAATCTTA TATGCAAGTG CATTCACGCT GCATATAACC ACATAAACAC 15345
.......... .......... .......... .......... .......... .......... 254
TAGGCCTTTC AGAAGAAGTC TAAAAAGTGT TTATAGGCAA GTTAGTTGTT TAGTGGTGAA 15285
.......... .......... .......... .......... .......... .......... 254
ATAGTAGGGT AAAGGAGAAA GAGTTATTCG TGTTATAAAG TTACGACACG TCTGAAACAC 15225
.......... .......... .......... .......... .......... .......... 254
AGGAAATTAT CCAGGACATG TTATAAATCA TTCAGAATCA CTACAAGATT CCCACATTCC 15165
.......... .......... .......... .......... .......... .......... 254
AAACAGGGTT TGAAGTAGTT ACTGTCTTGA ATCATACAGC ATATGCCTTT CTCTCTGTTC 15105
.......... .......... .......... .......... .......... .......... 254
TTCAAACCAA ACAATGACTG GATTTTATCT TGAGGGAAGA GCACCTTAGA CATGCTGGTA 15045
.......... .......... .......... .......... .......... .......... 254
GCTCGCTTAC CTCTCATCTC TGGTGAAAAT TGCGCTAGTA GCTTCTGCAG ATCCATGTGC 14985
.......... .......... .......... .......... .......... .......... 254
TCCAATAATA GGTCGAACAC ATTCAGCAGA TACTCCATCC CAAATGCGCA GAGAACCATC 14925
.......... .......... .......... .......... .......... .......... 254
TTTAGAAGCA GTCACATACA AGCTCCCAGT ACAGGAGTAG CGTACCTGGC AGCAACATCA 14865
.......... .......... .......... .......... .......... .......... 254
GTAAGCATGG CTGGCGGAGA ACTTTGATGA GAATATAACC AATGCAATCT AATGCTTGTG 14805
.......... .......... .......... .......... .......... .......... 254
AATCAGAAGG AAAGAGAAAA GCTACCTGGT TAATGGGAGA ACTAGAATCC TGTGCATTTG 14745
.......... .......... .......... .......... .......... .......... 254
CTGATAAGTA GCATGTAAAA GTATTTATAT CATATAAATG AGCAACTGGG TGATCAGTCC 14685
.......... .......... .......... .......... .......... .......... 254
CTGCAAATAA TTTTATCAGT GTCACTTGCT TCCAAATATA TGAAAATGAG TTTTTTTAAA 14625
.......... .......... .......... .......... .......... .......... 254
AAAAATACAT ATTTGAATGT TAATATTTGA CTATATGTAA GAAGAAAATT CCATACGATA 14565
.......... .......... .......... .......... .......... .......... 254
TGCTTGCAGT ATTTTTCAAA TGCCCACGAG ACAGAAACTG TTGATCCAGG AACGAAATCC 14505
.......... .......... .......... .......... .......... .......... 254
AAATTCTTAA GCCCAAATAT CAAATTGTTT TGGTGAAATG ATTAAATTAC TTTACAGATA 14445
.......... .......... .......... .......... .......... .......... 254
ACAACTGAAA ACATGTTAAC AACTTATAAT GCATAAAAAT CAGAGCATAT CAAACTGATA 14385
.......... .......... .......... .......... .......... .......... 254
TCAGACATCA AGAATCAGTT AATCACAGCA GAACTAGAAA TCAAATTTAA ATTTAGTGAA 14325
.......... .......... .......... .......... .......... .......... 254
AAGATCATAG TACCTGCTAA AAGGTAATCC CCACAAGGAT GAAAACATAC AGATCTAACA 14265
.......... .......... .......... .......... .......... .......... 254
TTATGAGTAT CCTGCCAAGC ATTAACAAAT GAGCCTGGTT AAATGCAATG AACACACCAT 14205
.......... .......... .......... .......... .......... .......... 254
TTTACATGAT ATATAGAGAG ATTGGATTGC TAGAATTTAC AACCTGAATA ACTCTGAACG 14145
.......... .......... .......... .......... .......... .......... 254
CTTTCCTCGC ATTGGTCTTT GAGAAGTCAA AAAATCTGTT GAGCAAAATT TTTTCATGTA 14085
.......... .......... .......... .......... .......... .......... 254
CAAAACAATA ACACAGATAG CAATTAATAC CGCAAAAAAT TCCTAAAAAA TCATGCTTAA 14025
.......... .......... .......... .......... .......... .......... 254
TCCTAGTATG AGCACTTCAA ATAGACAATT TAACAGCACG GAGTGTAGAC ATCAAGGATA 13965
.......... .......... .......... .......... .......... .......... 254
AGCATACTTT ATTGTATTGT CTTTTGCAGC TGATATCAGT ATTGGACTCT CAGGATGAAA 13905
.......... .......... .......... .......... .......... .......... 254
ATCCAGATCA TTGATGGCCT GCAAGAAATC AATCATGTTT ACGAGCACAG TGGAAATTTG 13845
.......... .......... .......... .......... .......... .......... 254
AGCAATGGGA AATGAAGTAG AAACTAGTGA AAATGGAAAA AAATGTTGTT TATTAAAAAA 13785
.......... .......... .......... .......... .......... .......... 254
TTGAATATCA TGTCAATGCT CCACACAGCT CA 13753
| | || || |||| ||| || | |
.......TGA TG-CATTGCT TAACA-AGTT TA 277
********************************************************************************
EST sequence 51 -strand (File: 6859195-)
1 TGCATGAAAC ACTGAATATA GATAAAAAAG ATAACTAATT GCACAATTTA CCTGTAATTT
61 GCGAGATGAA TTTTTTAAAC CTAGTTAGTC TATAATTAAA TAATAATTGT CAAATAAAAC
121 CAAAAGTACT ACAATAAGCC TACCTTCCAA AC
Predicted gene structure (within gDNA segment 17479 to 16463):
Exon 1 17046 16914 ( 133 n); cDNA 1 133 ( 133 n); score: 0.835
MATCH 21326110- 6859195- 0.835 133 0.875 C
PGS_21326110-_6859195- (17046 16914)
Alignment (genomic DNA sequence = upper lines):
TGCATGAAGC ATTAAATATA TACAAAAATA AAAACTAATT GCACAGTTTA CCTATAAATC 16987
|||||||| | | | |||||| | ||||| | |||||||| ||||| |||| ||| ||| |
TGCATGAAAC ACTGAATATA GATAAAAAAG ATAACTAATT GCACAATTTA CCTGTAATTT 60
GCGAGATAAA TCTTTTAAAC CTAGTTACTC TATGATTAGA CAATATTTGT CAAATAAAAA 16927
||||||| || | |||||||| ||||||| || ||| |||| | |||| |||| |||||||||
GCGAGATGAA TTTTTTAAAC CTAGTTAGTC TATAATTAAA TAATAATTGT CAAATAAAAC 120
CGAAAGTGCT ACA 16914
| ||||| || |||
CAAAAGTACT ACA 133
********************************************************************************
EST sequence 123 +strand (File: 8548455+)
1 TGGATCTGGC ATGGATCTCA GGAGCAAAGC CAGGGTAAGA TAAAAAGATT CCCTGCACTA
61 GGAGGGGACG GTATCCCGGG ATACTGTTTG TGGTGGCTCG TCACTACTCA CTTATCCTAT
121 CACTTATCTC TGAAGTCACC ATCCGCTGAG CTGTTCTTTG GCTTATATAC AAGAGCTCTG
181 CTCACCACTA CCACTGCAAT TGAATTTTTT TTTCTCTTCT GTTTACTTCC CAGAAAATTT
241 TGCAAAATTT TTCACATTCC CTGTCACATC GAATCTTTAG ACGCATGCAT GGAGTATTAA
301 ATATAGACGA AAATAAAAAC TAATTGCATA GTTTGGTCGA AATTAACGAG ACGAATCTTT
361 TGAACCTAGT TAGTACATGA TTGGACAATA TTTGTCAAAT ACAAACGAAA ATGCTA
Predicted gene structure (within gDNA segment 19599 to 16551):
Exon 1 17091 16916 ( 176 n); cDNA 243 416 ( 174 n); score: 0.790
MATCH 21326110- 8548455+ 0.790 176 0.423 C
PGS_21326110-_8548455+ (17091 16916)
Alignment (genomic DNA sequence = upper lines):
CAAAAACTTT TCAAAATTTC TCAACACATC AAATATTACG ACACATGCAT GAAGCATTAA 17032
| |||| ||| || | ||| | |||||| ||| || | || ||||||| | || |||||
C-AAAATTTT TC-ACATTCC CTGTCACATC GAATCTTTAG ACGCATGCAT GGAGTATTAA 300
ATATATACAA AAATAAAAAC TAATTGCACA GTTTACCTAT AAATCGCGAG ATAAATCTTT 16972
||||| || | |||||||||| |||||||| | |||| || | |||| | |||||||
ATATAGACGA AAATAAAAAC TAATTGCATA GTTTGGTCGA AATTAACGAG ACGAATCTTT 360
TAAACCTAGT TACTCTATGA TTAGACAATA TTTGTCAAAT AAAAACGAAA GTGCTA 16916
| |||||||| || | |||| || ||||||| |||||||||| | |||||||| |||||
TGAACCTAGT TAGTACATGA TTGGACAATA TTTGTCAAAT ACAAACGAAA ATGCTA 416
********************************************************************************
EST sequence 141 +strand (File: 11679374+)
1 ATCTTCTCAA AAACAAAAGA TTTCCCACAT GTCAGCTGGG TTGCCCAAAA GCTTCTCGAT
61 CGCCATTTTC GTGCTATAGA GGAGCCAAAA CATTCCTTAG AGTTTATTCA TCTTCCATCG
121 AAATAATCTG GATATCGACT TGGAAACTCT TTCCACCAAA TCTCTTCGTT TTAATTCACA
181 TCTGGCAATC TTTAACAATT ACTAGTAGTA CTTGATTCCA TTTTCAGTGA ACAACTGCCA
241 ATTGTGAACN ANNNNNNGCC AATATCATAT TCCATGCATG CATGCACACC AAACGCATGG
301 CATCCCGTCC CATCCACCTC CAAAATCATT CGCTCCCATC CATACAAATT ACAAAGGCCT
361 TGTTTAGTTC AGCCTAAAAA CCAAAAATTT TACAAGATTT TCCGTCGTAT CAAATCTTAC
421 GGCACATGAA GCATTAAATA TAAATATAAA TAAAAACTAA TTGAACAGTT TGTCTGTAAA
481 TCACGAGATG AATTT
Predicted gene structure (within gDNA segment 19464 to 16412):
Exon 1 19464 19434 ( 31 n); cDNA 340 368 ( 29 n); score: 0.581
Intron 1 19433 17105 (2329 n); Pd: 0.912 (s: 0), Pa: 0.000 (s: 0.76)
Exon 2 17104 16974 ( 131 n); cDNA 369 495 ( 127 n); score: 0.794
MATCH 21326110- 11679374+ 0.794 162 0.327 C
PGS_21326110-_11679374+ (19464 19434,17104 16974)
Alignment (genomic DNA sequence = upper lines):
CTATGCACAA GCACAAATGG GTCCGCTTAT GGTAAACTGG CATGGACAAG TTTCATCTGC 19405
| || || || ||||| || | |||
CCATACA-AA TTACAAA-GG CCTTGTTTAG T......... .......... .......... 368
CACTTCATTT TGTTTGTTAC ATCGATGTGA AGTTTCTTGA ACTATGGATT TGAATGGCAA 19345
.......... .......... .......... .......... .......... .......... 368
AACAAACACT GTTTAGAATA CCGTGTTGCG CTTTGACATG GTTCTTGTCA GCTGGGCAGC 19285
.......... .......... .......... .......... .......... .......... 368
TACACCAAAA TCACCTGTTT TGCACATTGT TGTGGCGCCA CAGCATGCCG ACCACAGAGT 19225
.......... .......... .......... .......... .......... .......... 368
CAGGACATGC AGAAATATGG GTGCTAAGAA TGCAAACTAA AACTTTTGAA GAAAACAAAT 19165
.......... .......... .......... .......... .......... .......... 368
GTGCTTACCC AACTTCACCT CGCCTTGCTC AGTTAGAAGA ATGTTGCCAC CCTTAATATC 19105
.......... .......... .......... .......... .......... .......... 368
TCTATGAACT TTAAAAATGG AGTGCAGGTA AGCAAGGCCC TGGAAGAAAA TAAGCACGCA 19045
.......... .......... .......... .......... .......... .......... 368
AAAGTTCAAT ATCCAAATAC ATTTAGTTGC CCAACAAGGC AGCAAATACT TCAAATCTGA 18985
.......... .......... .......... .......... .......... .......... 368
TGCAACTATG TTAGAACCTT TAGTGCTTCT CTACATATAT AAGCTATTTG GGATTCATCA 18925
.......... .......... .......... .......... .......... .......... 368
AGAGGCTCCT CTGTGATGCC TATCAAATCA GCAACACTTC CACCACCACA GTACTCCATA 18865
.......... .......... .......... .......... .......... .......... 368
ACTATCTGTA AGTTGAGAAT CGCATTTGCA TCAAGCCCAT GTTAAATGAC TCAAGAAGTA 18805
.......... .......... .......... .......... .......... .......... 368
GAGAAATCTC CCAATGATAG TTATTTCTTA ATGTTAATAA AATGGATACT ATCAGGCTAT 18745
.......... .......... .......... .......... .......... .......... 368
TTGATTGTAC CCATAGGTAG TCCTCTCCTT GGTAGCTTCC AAAGTAGCGG ACAACATTTG 18685
.......... .......... .......... .......... .......... .......... 368
GATGGCTACA CTGCTGCAGC ATCTCAATTT CTCCCCGTAT GTCTTCATAT CCTTCTTCCT 18625
.......... .......... .......... .......... .......... .......... 368
GAAAACCAAA GATACATACT TATATTTTGG AAAAATGCAA CGACTCGGAA AACAGACAGC 18565
.......... .......... .......... .......... .......... .......... 368
AACCACATTT ATGAGATTCT CTCACAATTG AGCCCATGCA AACAAAATGC TCACAACAAA 18505
.......... .......... .......... .......... .......... .......... 368
AGCAATATGG TTGCCAAATA TGAAATATGT CTCGGGTGGC CTTTCAGAAT ATTCACAGAA 18445
.......... .......... .......... .......... .......... .......... 368
CTTTGTAATA GAAAATTAGA AACTAACCCC TTCTGTTAGT GAGATAATCT TGACAGCCAC 18385
.......... .......... .......... .......... .......... .......... 368
AAGCTCCTGC GTTCTGAGAT CCCTTGCTTT GTACACTGCA CCATATGAGC CTTTCCCTGC 18325
.......... .......... .......... .......... .......... .......... 368
ATTCCCAATT GAATTTTGCA TTTCGCAAAA CAGCTCAAAG CTTCAGCCAT TCTACAAGTA 18265
.......... .......... .......... .......... .......... .......... 368
GACATACAGA ACTAATGAAA CAATAATTCC AGAGCAAGAG GCGCACCAAG CTCATGGAGC 18205
.......... .......... .......... .......... .......... .......... 368
AGCTCGTACT TGGTGGAAGG ATCCTCTCTG GTAACACTGT CTGGCGCCGA GCTCACTGAT 18145
.......... .......... .......... .......... .......... .......... 368
GGCTTCCGCC TTGAATGCTG CTGCTGTTGT TGCTGCATCA GAGGCGACGG TTGCCGGAGC 18085
.......... .......... .......... .......... .......... .......... 368
TCCTCTGTCT GCTCCACCGC TGGACTCCAG AAAGAGGACC CGAAACCCCC GCCGCCGCCA 18025
.......... .......... .......... .......... .......... .......... 368
GAAGCAGATT CATAGGAACT GGAACCCCCG CTGGTGTGGC GAATGAAGGT GCCAGAGAAC 17965
.......... .......... .......... .......... .......... .......... 368
GACCCGCGGG GGCTCGACGG GCTCCCTGGT CGGCGGATGA ATGTGCCGGA GACCGAGTCC 17905
.......... .......... .......... .......... .......... .......... 368
CGGGGGCTCG ACGGGGTGCT AGTCCGGCGG ATGAATGTGC CAGAGACGGA TTCGTGAGGG 17845
.......... .......... .......... .......... .......... .......... 368
CTGGACGAGC CCCCGGAGCG ACGGATGAAT GTGCCTGAGG CGGACCCTCG AGGGCTGGAG 17785
.......... .......... .......... .......... .......... .......... 368
GAGGTCCCCC CCGAGCGTGC GGTGGAGTGG ACGACGAAGG TAGAGTATGG GTCGTCATCG 17725
.......... .......... .......... .......... .......... .......... 368
GTAGCGCGGG GGCTGGAGCG CCGCAGATCC AGGAACGGAG ATCGAGCGGA GGCCGGGGCG 17665
.......... .......... .......... .......... .......... .......... 368
CCGCTCTTGA AGACCACCGT AGCGGAGAGG GAAGCATCGT CGGGGTCGGA GGAGTAGGCG 17605
.......... .......... .......... .......... .......... .......... 368
TCCTCGTCTT CGTCAAAGGA GGGGCCGCCG AAGTCCTTGG GGAGCCGCTG GAGAAGCGGA 17545
.......... .......... .......... .......... .......... .......... 368
GGCAGCGAGG AGGGGTCTTC CTCCTCGTCT TCCTCCGCCC GCGTGGACGG GCCCCTGCCG 17485
.......... .......... .......... .......... .......... .......... 368
CGCCTGCTGC CGCGGGCGTC GTCCTCGTCG TCATCGCCGT GGACGACGAA GGTTGAGTAG 17425
.......... .......... .......... .......... .......... .......... 368
ACGTCGTTTC TCTTGGGACG CGACCACGGC GAGCGCGGGG AGAAAGCCAT GGCGTGCCAC 17365
.......... .......... .......... .......... .......... .......... 368
GCGAGGTGGG AGGAGACGGT GAAGGTGCTC GTCGGGAATG GCAAATGGGG AAAATTGTTT 17305
.......... .......... .......... .......... .......... .......... 368
AGTTGGAGCC AGTTCACTCG AATCTGGCAA ATATGGGTCG GGCTCGGATG GGCCATCCCA 17245
.......... .......... .......... .......... .......... .......... 368
TTCTAGGCCC ACGTGACATA GAGAATCCGG TCAAATTCTT CCTTCCCGCA GTCCCGCTAG 17185
.......... .......... .......... .......... .......... .......... 368
GCCCACACGA CCACACCCAG TCACCCGCAG CCACAGGCCG CAGAGAGCTT CCTCGAAAGG 17125
.......... .......... .......... .......... .......... .......... 368
AGCTTCTCTT TTTTCTCCAC TCACCCCAAA AACCAAAAAC TTTTCAAAAT TTCTCAACAC 17065
||| || ||| ||||||||| ||| ||| || || | |
.......... .......... TCAGCCTAAA AACCAAAAAT TTTACAAGAT TTTCCGTCGT 408
ATCAAATATT ACGACACATG CATGAAGCAT TAAATATATA CAAAAATAAA AACTAATTGC 17005
||||||| || ||| || |||||||||| |||||||| | | ||||||| |||||||||
ATCAAATCTT ACG--GCA-- CATGAAGCAT TAAATATAAA TATAAATAAA AACTAATTGA 464
ACAGTTTACC TATAAATCGC GAGATAAATC T 16974
||||||| | | |||||| | ||||| ||| |
ACAGTTTGTC TGTAAATCAC GAGATGAATT T 495
********************************************************************************
EST sequence 129 +strand (File: 14514413+)
1 GATGCAATAA GGAAGGAAGG CTGCAACGTC CACGGCTACT TTGTATGGTC ACTGCTAGAT
61 AACTGGGAGT GGAACTCTGG GTACACGGTG CGGTTTGGAC TCTACTACAT TGACTACAAC
121 AACAACCTGA CAAGGATTCC CAAGGCGTCA GTGGAATGGT TCAAGCAGGT CTTAGCCCAA
181 AAGACGGCTA ATTTGGAGTA CAGTGGTTCG ACAATAGCCA GTAGTTAAGT GTATATAATA
241 TCTACAGCTA CCATCTCTAC ATGCTTTGCG TACCTTTGGA TTAGATTGTG ATTATTCTCA
301 AATGTATATA GCCCACCATT TGGACGACCT TCAACCGTCC AGTTGAATGT GTCGTTATGC
361 TTGTCATACA TGGCCTTGTT TAGTTCACCC CAGAAACCAA AAACTTTTCA AGATTCTCCA
421 TCACATCAAA TCTTGTAGCA CATACATGAA ACACTAAATA TAGACGAAAA TAAAAACTAA
481 TTGCACAGTT TACCT
Predicted gene structure (within gDNA segment 19360 to 16689):
Exon 1 17104 16994 ( 111 n); cDNA 385 495 ( 111 n); score: 0.856
MATCH 21326110- 14514413+ 0.856 111 0.224 C
PGS_21326110-_14514413+ (17104 16994)
Alignment (genomic DNA sequence = upper lines):
TCACCCCAAA AACCAAAAAC TTTTCAAAAT TTCTCAACAC ATCAAATATT ACGACACATG 17045
|||||||| | |||||||||| ||||||| || | || ||| ||||||| || |||||
TCACCCCAGA AACCAAAAAC TTTTCAAGAT TCTCCATCAC ATCAAATCTT GTAGCACATA 444
CATGAAGCAT TAAATATATA CAAAAATAAA AACTAATTGC ACAGTTTACC T 16994
|||||| || |||||||| | | |||||||| |||||||||| |||||||||| |
CATGAAACAC TAAATATAGA CGAAAATAAA AACTAATTGC ACAGTTTACC T 495
********************************************************************************
EST sequence 17 +strand (File: 25451626+)
1 GCCGTCCTCC GCCCCACCTC CCTCCCATGG CCTTCTCCCC GCGCTCGCCG TGGTCGCGCT
61 CCAAAAAGCC CGACATCTAC TCCACCGTTG TGGTCCACGA CGACGAGGAC GACGCCCGCG
121 GCGGCGGCGC CGCCCGCGCG GAGGATGACG ACGACGACGA CCCCTCCGCG CTGCCCCCGC
181 TCCTCCAAGC GCCTCCCCAA GGACTTCGGN GGNGCGTCCT TCGAACGACG AANAACAACC
241 TTACTCCTCG GACCTCGAAG AAGCCTCGCT CTCCGGCAAC GTNGTCAANA AAGCGGCGGG
301 GGCCCCGCCT NCAAATTGTN CTCCTCCCGA TTCCCGTTTC TGGATTTGNN GCGNTTCAAG
361 CCCCGNGGCG GCCAAAGGCG AACCGTTNTN CAACTTNCTC GTCCAAGGGA ACGNGCGCTN
421 CGGGGGGGGG CCTNCAAACC CCGNGAATTC GTNTCCCGGA AGNTTANAAC CCANTNCGGG
481 NGGGCCCCCA AACCCCGNGA GTCCTTTTTC GGGAAAAATT ANTCGGCAAA AANCGTGGGT
541 TCTCCAAACC CCAAAAANNT NTTTCCGGGA AGNTTAATTA A
Predicted gene structure (within gDNA segment 16921 to 19742):
Exon 1 17372 17665 ( 294 n); cDNA 24 297 ( 274 n); score: 0.745
MATCH 21326110+ 25451626+ 0.745 294 0.506 C
PGS_21326110+_25451626+ (17372 17665)
Alignment (genomic DNA sequence = upper lines):
GCCATGGCTT TCTCCCCGCG CTCGCCGTGG TCGCGTCCCA AGAGAAACGA CGTCTACTCA 17431
||||||| | |||||||||| |||||||||| ||||| ||| | | ||| | |||||||
CCCATGGCCT TCTCCCCGCG CTCGCCGTGG TCGCGCTCCA AAAAGCCCGA CATCTACTCC 83
ACCTTCGTCG TCCACGGCGA TGACGACGAG GACGACGCCC GCGGCAGCAG GCGCGGCAGG 17491
||| | || | |||| | ||||||||| |||||||||| || | || | |||||
ACCGTTGTGG TCCA---C-- -GACGACGAG GACGACGCCC GC-G--GC-- G-GCGGC--- 128
GGCCCGTCCA CGCGGGCGGA GGAAGACGAG GAGGAAGACC CCTCCTCGCT GCCTCCGCTT 17551
| ||| || ||| ||||| ||| ||||| || || |||| ||||| |||| ||| |||||
-G-CCG-CC- CGC--GCGGA GGATGACGAC GACGACGACC CCTCCGCGCT GCCCCCGCTC 182
CTCC-AGCGG CTCCCCAAGG ACTTCGGCGG CCCCTCCTTT G-ACGAAGAC GAGGACGCCT 17609
|||| |||| |||||||||| ||||||| || | ||||| | |||| || | | | |
CTCCAAGCGC CTCCCCAAGG ACTTCGGNGG NGCGTCCTTC GAACGACGAA NAACAACCTT 242
ACTCCTCCGA CCCCGACGAT GCTTCCCTCT CCGCTACGGT GGTCTTCAAG AGCGGC 17665
||||||| || || ||| || || || |||| ||| | || ||| || ||||||
ACTCCTCGGA CCTCGAAGAA GCCTCGCTCT CCGGCAACGT NGTCAANAA- AGCGGC 297
********************************************************************************
EST sequence 82 +strand (File: 2352083+)
1 ATAGATGGAT CATAACTCGC CGAAATCTCG TCGGAGCCGG AAACCGGAGC CCAAACCTGA
61 CATATACTCC ACTTTCGTAG TCCACTCCGA CTCTGATTCT GATCAAGGTC GAGATCGAGA
121 CAAACGTAAA GCCAAACCTG AGGAAGACGA AAATGTCGAT TTATACGCTA CAATGGTCTA
181 CAAAGGCGAT AGTGACGGAG AAGGAGAGGA AGATGATGAT GACGATTCTA TGCTTCCTCC
241 TCTTCTCAAG CGTCTTCCCA AGGATTTCGG AGGCGGCGCG TCGCTCGATT ACGACGACGA
301 CGACGGTGAT GAATCTGGAG ATTTCGGTAC GATGATTGTG AAAACAGATC GGAGTAGTCA
361 TAGTAAGAAG AACAGTCCGT ACTCGTCCAA ACCGCGAATG GGAGTTAGTC CTAGGAGGAG
421 AGCGAGAGGC GGAGATGAGG AATCTTCTGA TGAAGAAGAC GAAGAAGAAG ATGATGATGA
481 CGACGACGGA GACTACGGTA CGTTTGTTGT GAAATCTAAG GATAAAAAGG GAAAGAAGAA
541 AGACAAGGAG ATTGATATGA CAACTATGGG AAGAGCTGTT GCGAGTATGC AGAAATCAAA
601 TTTTGGTGGT AAGACTCGGA AATTGGATCC TTCCTCTTCT TCTTCGAAAC TTCACGGTGA
661 AGATAATCGG AAAATGCAGC AGCAAAACAG TAAGATGTCG ACTACGTCTC TTCCGGATAG
721 CATTACTAGA GAAGATCCAA CCACCAAATA CGAATTCCTC AATGAACTTG GGAAAGGATC
781 ATATGGATCT GTATACAAGG CAAGAGATTT GAAAACATCA GAGATTGTTG CTGTGAAAGT
841 CATATCACTT ACTGAAGGGG AGGAGGGGTA TGAAGAGATC CGGGGAGAAA TTGAGATGCT
901 GCAGCAATGT AATCATCCTA ATGTTGTCCG CTACCTAGGG AGTTACCAAG GAGAAGATTA
961 TCTTTGGATA GTGATGGAGT ATTGTGGAGG TGGAAGTGTT GCTGATCTTA TGAATGTTAC
1021 TGAGGAGGCG TTAGAGGAGT ATCAGATAGC ATATATATGT CGGGAGGCGT TGAAGGGCCT
1081 TGCATACTTG CACTCAATAT ATAAAGTCCA TAGAGACATT AAAGGTGGAA ATATCTTGTT
1141 AACTGAACAA GGAGAGGTCA AGTTGGGTGA CTTTGGGGTT GCAGCTCAAC TTACTCGCAC
1201 TATGTCGAAG CGAAACACGT TCATTGGGAC TCCACATTGG ATGGCCCCAG AGGTTATTCA
1261 GGAAAATCGT TATGATGGGA AGGTTGATGT ATGGGCTCTT GGTGTTTCAG CTATTGAGAT
1321 GGCAGAGGGG CTCCCTCCAA GATCATCAGT TCATCCGATG AGGGTTTTGT TCATGATATC
1381 CATCGAGCCA GCTCCAATGC TCGAGGATAA AGAAAAATGG TCCCTGGTCT TTCATGATTT
1441 TGTTGCAAAG TGCCTCACAA AGGAACCACG TCTTCGCCCA ACTGCAGCTG AGATGCTTAA
1501 GCACAAATTT GTTGAGAGAT GTAAAACTGG GGCTTCTGCA ATGTCGCCAA AGATTGAGAA
1561 GTCCAGACAA ATCAGAGCTA CAATGGCTCT GCAAGCGCAA AGTGTTGTCG CACCTTCTTT
1621 GGAGGACACT TCAACACTGG GTCCAAAATC AAGCGAGGAG CTTGGAATTA CTGTTCCATC
1681 TAAACCTCCT CAAAATTCGA CCGAAGCACC TCTAACCAGC ACCCTGAATC GGCAGCATAT
1741 TACTGGCAAC ACTGTGTTGG CTGGAGAAGG TGGTGACTTC GGAACTATGA TCGTTCATGG
1801 TGAGGATGAG ACAGAGGAGA GTGACTCCAG GTCTCAGCTT GTCAGAGAAA AAGAATCTTC
1861 ATCTTCTCAG TTTGAAGGTG TTCCTCGCGA ATTCCCAGGA GAAGAATTAC CTGACTCATG
1921 GATACATGAC AAAAAGAAGC CTCCGGCTAT TGATCTTCCA GTTGAAGCTT CGATTTCACA
1981 GAGCATGCAG GCAAGTTCAT CTCATGAGCA TAGAACCAAG CTACATAACA TAGCTGGAAC
2041 ACAGATGGAA GGTGGCAGTG ATGCAAGTGG TAGTACCTTG AAAAATGAAA CTGTTGGCAG
2101 GAAAGCTTTT GCTTTGCAAG ATAAGTTATG GTCAATCTAC GCAGCTGGAA ACACAGTACC
2161 GATACCGTTC TTGAGAGCAA CAGATATATC CCCAATCGCA CTCTTGTCAG AGAACATGAT
2221 CGGAGGCATG CAACAAGATG GGAATGGAAC TGTAGCCGTC GAAGCACTTC AGGAGCTCTT
2281 CACTTCTTCT GATCCCCAAT CCAAAAAGGG CCGACGTGGA CAAAACGAGA TGCCTCTTCC
2341 TCCAAGCGTA TACCAAAGAC TGACAACAAG CTCTTCTCTG ATGAACCTTG CACAAGTTTT
2401 AGCCTACCAC AGAGCGTGTT ACGAGGAAAT GCCGCTGCAG GAATTGCAAG CAACGCAGGA
2461 GCAGCAAACC ATTCAGAATC TGTGCGATAC TCTTCGCACT ATTCTCCGCC TCTAAATAGT
2521 CTTGTGTTCA TATCTGTTGC TACTCTTGTA TTAGTATAGG TCGTCTCAGC AAGTACATGT
2581 TTATTTTCCT AGAAGTTTTT ATTAAAAACC AATCAATTTT GTCTCCTCTT AGCACAATTG
2641 CTAGAAGATT GAATGGAACA AACGGATTTT GTAACACTCG TATAAATAGT ATCCCCTTAG
Predicted gene structure (within gDNA segment 14914 to 22500):
Exon 1 15495 15519 ( 25 n); cDNA 691 716 ( 26 n); score: 0.680
Intron 1 15520 18164 (2645 n); Pd: 0.679 (s: 0), Pa: 0.000 (s: 0.74)
Exon 2 18165 18218 ( 54 n); cDNA 717 770 ( 54 n); score: 0.759
Intron 2 18219 18328 ( 110 n); Pd: 0.941 (s: 0.76), Pa: 0.878 (s: 0.72)
Exon 3 18329 18417 ( 89 n); cDNA 771 859 ( 89 n); score: 0.742
Intron 3 18418 18626 ( 209 n); Pd: 0.993 (s: 0.70), Pa: 0.998 (s: 0.88)
Exon 4 18627 18734 ( 108 n); cDNA 860 967 ( 108 n); score: 0.843
Intron 4 18735 18859 ( 125 n); Pd: 0.980 (s: 0.82), Pa: 0.787 (s: 0.80)
Exon 5 18860 18967 ( 108 n); cDNA 968 1075 ( 108 n); score: 0.741
Intron 5 18968 19065 ( 98 n); Pd: 0.000 (s: 0.68), Pa: 0.953 (s: 0.84)
Exon 6 19066 19156 ( 91 n); cDNA 1076 1166 ( 91 n); score: 0.813
Intron 6 19157 19270 ( 114 n); Pd: 0.984 (s: 0.78), Pa: 0.000 (s: 0.74)
Exon 7 19271 19323 ( 53 n); cDNA 1167 1219 ( 53 n); score: 0.755
Intron 7 19324 20843 (1520 n); Pd: 0.770 (s: 0.74), Pa: 0.962 (s: 0.90)
Exon 8 20844 20906 ( 63 n); cDNA 1220 1282 ( 63 n); score: 0.905
Intron 8 20907 21626 ( 720 n); Pd: 0.929 (s: 0.90), Pa: 0.999 (s: 0.82)
Exon 9 21627 21671 ( 45 n); cDNA 1283 1327 ( 45 n); score: 0.822
Intron 9 21672 21777 ( 106 n); Pd: 0.992 (s: 0.82), Pa: 0.998 (s: 0)
Exon 10 21778 21813 ( 36 n); cDNA 1328 1363 ( 36 n); score: 0.722
Intron 10 21814 22451 ( 638 n); Pd: 0.596 (s: 0), Pa: 0.894 (s: 0.84)
Exon 11 22452 22500 ( 49 n); cDNA 1364 1412 ( 49 n); score: 0.837
MATCH 21326110+ 2352083+ 0.793 721 0.267 C
PGS_21326110+_2352083+ (15495 15519,18165 18218,18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500)
Alignment (genomic DNA sequence = upper lines):
TATGAAGTTT ACTACGT-TC TTTCAGGTAT GTCCTATCTT GTGGGAAAGA TTCTTGTGTC 15553
|| || || ||||||| || || | |
TAAGATGTCG ACTACGTCTC TTCCGG.... .......... .......... .......... 716
AAGTTATGGG AAGTTGGCAC TGGACGACTT GTGAAGCAAT ATGCAGGAGC CATTCGCAGA 15613
.......... .......... .......... .......... .......... .......... 716
CAATTTCGTT GTCAGGTTAG TTTCTCTGTG TTTCTATAAG ATTATTATTT TTTCCTGATT 15673
.......... .......... .......... .......... .......... .......... 716
TAAATTTACT CGTGTGCCAT ATATATTATT TTTACCCAAA ATTTTAGGAA ACAAAATATT 15733
.......... .......... .......... .......... .......... .......... 716
GCAATTCTTT AATTTGAAAA TAGGCTGGTT TGAGCTTGCA GCTTAGGATA ACAACATACC 15793
.......... .......... .......... .......... .......... .......... 716
TAACCTTGCT ATGATAGACA ATAAATATGA TAATAACTGT TCTTACTATC CAGGCTGTCT 15853
.......... .......... .......... .......... .......... .......... 716
TCAATGAAAC CGAAGAATTT GTTCTATCAG TTGATGAACA AAACAATGAG GTAAATTCCA 15913
.......... .......... .......... .......... .......... .......... 716
AATTGAGAAC AGTATATATA TTTGTATTTC AGCAAGCTTA ACTATGATAC GTCACTCTTC 15973
.......... .......... .......... .......... .......... .......... 716
AGGTTGTCGT CTGGGATGCA CTTACTGCAG AAAAGGTTGC AAGATTGCCC TCTGGCAGCA 16033
.......... .......... .......... .......... .......... .......... 716
CTGGTGCTCC CAGATGGCTC GACCACTCCC CAGTTGAACC AGTTTTTGTT ATTTGTGGAA 16093
.......... .......... .......... .......... .......... .......... 716
ATGATAGATC GATCAGATTC TGGAAACAAA CCGTATAGCT TGTAGATTCA ACCATTCAAA 16153
.......... .......... .......... .......... .......... .......... 716
TCAAAAGTAT GCTTTCAGTA TTACGTTTCA GGAGGAATGT GCTCATGTAA CTTTAGTTGT 16213
.......... .......... .......... .......... .......... .......... 716
ATATGGGAGA AATTTGCATA AGCATTTTTT TTATTGGAAA CTGCATAAGC AATTGATTGA 16273
.......... .......... .......... .......... .......... .......... 716
TCTAATAGCA AACCCCAATG ATATGTTTTT TTTTTGGCTC TGCATAGCTG ATGACAGTTG 16333
.......... .......... .......... .......... .......... .......... 716
TATGAACCCT TGACCTGATT CTTATTGGTC AGGCCCTTTT CGATGATTTG CTATTTTATC 16393
.......... .......... .......... .......... .......... .......... 716
CCAATTGTGG ATTGCGGAAT ATATTTCTTC TTCGAATGTA ATGATGGTCT CGCCCTACCA 16453
.......... .......... .......... .......... .......... .......... 716
CATGTGTGAT AGCCTATAAA AGTTCTACAA CACATTATTG CATTTCACTT AGGGCATGTT 16513
.......... .......... .......... .......... .......... .......... 716
TAGATTGAAG ATGAAAATTT TTTAGGTCAC ATCGGATATG TCGGAAGGAT GTCGGGAGGG 16573
.......... .......... .......... .......... .......... .......... 716
GTTTTTAAAA ACTAATAAAA AAAACAAATT ACATAACTCG TCAGGAAACT GCAAGACGAA 16633
.......... .......... .......... .......... .......... .......... 716
TCTATTAAGT ATAATTAATC TATTATTAGC ACATGTGGGT TACTGTAGCA CTTAAGGCTA 16693
.......... .......... .......... .......... .......... .......... 716
ATCATGGACT AACTAGGCTT AAAAAATTCA TCTCGCGATT TTCAACCAAA CTGTGTAATT 16753
.......... .......... .......... .......... .......... .......... 716
ATTTTTTATC TACATTTAAT GTTTTATGTA TGTGTCTAAA GATTCAATGT GATGGATGAA 16813
.......... .......... .......... .......... .......... .......... 716
AATTTTTTAG GTGGGAACTA AACAGGGCCT TATATTTTTT AAAAAAGATG TGCAAGTGTC 16873
.......... .......... .......... .......... .......... .......... 716
AGGCCTTGTT TAGTTTCGAA AACTTTTTGG TTTTTGAGAC TGTAGCACTT TCGTTTTTAT 16933
.......... .......... .......... .......... .......... .......... 716
TTGACAAATA TTGTCTAATC ATAGAGTAAC TAGGTTTAAA AGATTTATCT CGCGATTTAT 16993
.......... .......... .......... .......... .......... .......... 716
AGGTAAACTG TGCAATTAGT TTTTATTTTT GTATATATTT AATGCTTCAT GCATGTGTCG 17053
.......... .......... .......... .......... .......... .......... 716
TAATATTTGA TGTGTTGAGA AATTTTGAAA AGTTTTTGGT TTTTGGGGTG AGTGGAGAAA 17113
.......... .......... .......... .......... .......... .......... 716
AAAGAGAAGC TCCTTTCGAG GAAGCTCTCT GCGGCCTGTG GCTGCGGGTG ACTGGGTGTG 17173
.......... .......... .......... .......... .......... .......... 716
GTCGTGTGGG CCTAGCGGGA CTGCGGGAAG GAAGAATTTG ACCGGATTCT CTATGTCACG 17233
.......... .......... .......... .......... .......... .......... 716
TGGGCCTAGA ATGGGATGGC CCATCCGAGC CCGACCCATA TTTGCCAGAT TCGAGTGAAC 17293
.......... .......... .......... .......... .......... .......... 716
TGGCTCCAAC TAAACAATTT TCCCCATTTG CCATTCCCGA CGAGCACCTT CACCGTCTCC 17353
.......... .......... .......... .......... .......... .......... 716
TCCCACCTCG CGTGGCACGC CATGGCTTTC TCCCCGCGCT CGCCGTGGTC GCGTCCCAAG 17413
.......... .......... .......... .......... .......... .......... 716
AGAAACGACG TCTACTCAAC CTTCGTCGTC CACGGCGATG ACGACGAGGA CGACGCCCGC 17473
.......... .......... .......... .......... .......... .......... 716
GGCAGCAGGC GCGGCAGGGG CCCGTCCACG CGGGCGGAGG AAGACGAGGA GGAAGACCCC 17533
.......... .......... .......... .......... .......... .......... 716
TCCTCGCTGC CTCCGCTTCT CCAGCGGCTC CCCAAGGACT TCGGCGGCCC CTCCTTTGAC 17593
.......... .......... .......... .......... .......... .......... 716
GAAGACGAGG ACGCCTACTC CTCCGACCCC GACGATGCTT CCCTCTCCGC TACGGTGGTC 17653
.......... .......... .......... .......... .......... .......... 716
TTCAAGAGCG GCGCCCCGGC CTCCGCTCGA TCTCCGTTCC TGGATCTGCG GCGCTCCAGC 17713
.......... .......... .......... .......... .......... .......... 716
CCCCGCGCTA CCGATGACGA CCCATACTCT ACCTTCGTCG TCCACTCCAC CGCACGCTCG 17773
.......... .......... .......... .......... .......... .......... 716
GGGGGGACCT CCTCCAGCCC TCGAGGGTCC GCCTCAGGCA CATTCATCCG TCGCTCCGGG 17833
.......... .......... .......... .......... .......... .......... 716
GGCTCGTCCA GCCCTCACGA ATCCGTCTCT GGCACATTCA TCCGCCGGAC TAGCACCCCG 17893
.......... .......... .......... .......... .......... .......... 716
TCGAGCCCCC GGGACTCGGT CTCCGGCACA TTCATCCGCC GACCAGGGAG CCCGTCGAGC 17953
.......... .......... .......... .......... .......... .......... 716
CCCCGCGGGT CGTTCTCTGG CACCTTCATT CGCCACACCA GCGGGGGTTC CAGTTCCTAT 18013
.......... .......... .......... .......... .......... .......... 716
GAATCTGCTT CTGGCGGCGG CGGGGGTTTC GGGTCCTCTT TCTGGAGTCC AGCGGTGGAG 18073
.......... .......... .......... .......... .......... .......... 716
CAGACAGAGG AGCTCCGGCA ACCGTCGCCT CTGATGCAGC AACAACAGCA GCAGCATTCA 18133
.......... .......... .......... .......... .......... .......... 716
AGGCGGAAGC CATCAGTGAG CTCGGCGCCA GACAGTGTTA CCAGAGAGGA TCCTTCCACC 18193
| || ||| | ||||| || ||| |||||
.......... .......... .......... .ATAGCATTA CTAGAGAAGA TCCAACCACC 745
AAGTACGAGC TGCTCCATGA GCTTGGTGCG CCTCTTGCTC TGGAATTATT GTTTCATTAG 18253
|| ||||| | ||| |||| ||||
AAATACGAAT TCCTCAATGA ACTTG..... .......... .......... .......... 770
TTCTGTATGT CTACTTGTAG AATGGCTGAA GCTTTGAGCT GTTTTGCGAA ATGCAAAATT 18313
.......... .......... .......... .......... .......... .......... 770
CAATTGGGAA TGCAGGGAAA GGCTCATATG GTGCAGTGTA CAAAGCAAGG GATCTCAGAA 18373
||||| || ||||||| | | || || ||| ||||| ||| | | ||
.......... .....GGAAA GGATCATATG GATCTGTATA CAAGGCAAGA GATTTGAAAA 815
CGCAGGAGCT TGTGGCTGTC AAGATTATCT CACTAACAGA AGGGGTTAGT TTCTAATTTT 18433
| ||| | ||| ||||| || | || | |||| || || ||||
CATCAGAGAT TGTTGCTGTG AAAGTCATAT CACTTACTGA AGGG...... .......... 859
CTATTACAAA GTTCTGTGAA TATTCTGAAA GGCCACCCGA GACATATTTC ATATTTGGCA 18493
.......... .......... .......... .......... .......... .......... 859
ACCATATTGC TTTTGTTGTG AGCATTTTGT TTGCATGGGC TCAATTGTGA GAGAATCTCA 18553
.......... .......... .......... .......... .......... .......... 859
TAAATGTGGT TGCTGTCTGT TTTCCGAGTC GTTGCATTTT TCCAAAATAT AAGTATGTAT 18613
.......... .......... .......... .......... .......... .......... 859
CTTTGGTTTT CAGGAAGAAG GATATGAAGA CATACGGGGA GAAATTGAGA TGCTGCAGCA 18673
|| || | | |||||||| || |||||| |||||||||| ||||||||||
.......... ...GAGGAGG GGTATGAAGA GATCCGGGGA GAAATTGAGA TGCTGCAGCA 906
GTGTAGCCAT CCAAATGTTG TCCGCTACTT TGGAAGCTAC CAAGGAGAGG ACTACCTATG 18733
|||| ||| || ||||||| |||||||| | || || ||| |||||||| | | || || ||
ATGTAATCAT CCTAATGTTG TCCGCTACCT AGGGAGTTAC CAAGGAGAAG ATTATCTTTG 966
GGTACAATCA AATAGCCTGA TAGTATCCAT TTTATTAACA TTAAGAAATA ACTATCATTG 18793
|
G......... .......... .......... .......... .......... .......... 967
GGAGATTTCT CTACTTCTTG AGTCATTTAA CATGGGCTTG ATGCAAATGC GATTCTCAAC 18853
.......... .......... .......... .......... .......... .......... 967
TTACAGATAG TTATGGAGTA CTGTGGTGGT GGAAGTGTTG CTGATTTGAT AGGCATCACA 18913
|||| | |||||||| ||||| ||| |||||||||| ||||| | || | ||
......ATAG TGATGGAGTA TTGTGGAGGT GGAAGTGTTG CTGATCTTAT GAATGTTACT 1021
GAGGAGCCTC TTGATGAATC CCAAATAGCT TATATATGTA GAGAAGCACT AAAGGTTCTA 18973
|||||| | | || || | || ||||| ||||||||| | || || | |||
GAGGAGGCGT TAGAGGAGTA TCAGATAGCA TATATATGTC GGGAGGCGTT GAAG...... 1075
ACATAGTTGC ATCAGATTTG AAGTATTTGC TGCCTTGTTG GGCAACTAAA TGTATTTGGA 19033
.......... .......... .......... .......... .......... .......... 1075
TATTGAACTT TTGCGTGCTT ATTTTCTTCC AGGGCCTTGC TTACCTGCAC TCCATTTTTA 19093
|||||||| ||| ||||| || || | ||
.......... .......... .......... ..GGCCTTGC ATACTTGCAC TCAATATATA 1103
AAGTTCATAG AGATATTAAG GGTGGCAACA TTCTTCTAAC TGAGCAAGGC GAGGTGAAGT 19153
|||| ||||| ||| ||||| ||||| || | | | |||| ||| ||||| ||||| ||||
AAGTCCATAG AGACATTAAA GGTGGAAATA TCTTGTTAAC TGAACAAGGA GAGGTCAAGT 1163
TGGGTAAGCA CATTTGTTTT CTTCAAAAGT TTTAGTTTGC ATTCTTAGCA CCCATATTTC 19213
|||
TGG....... .......... .......... .......... .......... .......... 1166
TGCATGTCCT GACTCTGTGG TCGGCATGCT GTGGCGCCAC AACAATGTGC AAAACAGGTG 19273
|||
.......... .......... .......... .......... .......... .......GTG 1169
ATTTTGGTGT AGCTGCCCAG CTGACAAGAA CCATGTCAAA GCGCAACACG GTATTCTAAA 19333
| ||||| || || || || || || | | | ||||| || ||| ||||||
ACTTTGGGGT TGCAGCTCAA CTTACTCGCA CTATGTCGAA GCGAAACACG .......... 1219
CAGTGTTTGT TTTGCCATTC AAATCCATAG TTCAAGAAAC TTCACATCGA TGTAACAAAC 19393
.......... .......... .......... .......... .......... .......... 1219
AAAATGAAGT GGCAGATGAA ACTTGTCCAT GCCAGTTTAC CATAAGCGGA CCCATTTGTG 19453
.......... .......... .......... .......... .......... .......... 1219
CTTGTGCATA GTTCTTCAAT GTGATGGTAC TTTTATGGGA ACTTGAAGCA AGTCTGTGTT 19513
.......... .......... .......... .......... .......... .......... 1219
GGAAAATGAT TGCTGTGAAG TCCTAACTGT TTCTTTAAGT GTCATACTGC AAGTGCATTA 19573
.......... .......... .......... .......... .......... .......... 1219
TGGTCTATTA GGTTTAAAAT GAAAAATAAG AAAGTATATA TTTGTTATCT AGTATGCCTC 19633
.......... .......... .......... .......... .......... .......... 1219
GCCTAATTCC TTGGCATTTC TTCCATTCTT TGAAACCCAT ACTGGTGGAA CCTAGTTGAA 19693
.......... .......... .......... .......... .......... .......... 1219
GTGGTTCCTG TACAAATACT CTCTGCACTG CTTCTTCTCC CTTTCTTGTC GTGACAGCCT 19753
.......... .......... .......... .......... .......... .......... 1219
CTAGTCCCCA TATATCCCAT TATGAATCTG CTCACTCCCC CATTTGGCTT CTTCCTAGGC 19813
.......... .......... .......... .......... .......... .......... 1219
CACCACTCAA CAATTCTTCT GTTCTTGATG ACTGCGATGC TCCATTCGAT CTGGCAAATT 19873
.......... .......... .......... .......... .......... .......... 1219
GCTGCCTTGC TGGAGCTATT CAAGAACGTA GAGGGTTACT GTGACATTAG CATATCAAAC 19933
.......... .......... .......... .......... .......... .......... 1219
CAACAGGTCT GTTGGAAATC ATAATCACAA TGAACCTCCA AGTGGGAAAT ATTATCCAGG 19993
.......... .......... .......... .......... .......... .......... 1219
GCGTCATCTT ACCTCCAAGT TATGGACTCT GCTTGACACT AGAGGAAGAG TTAGTGCACA 20053
.......... .......... .......... .......... .......... .......... 1219
GGGAGTCCAA ATCAGGTAGG ATAGTTGATA GTTCATAATT GGCTAGATCT AGGAGGAGGT 20113
.......... .......... .......... .......... .......... .......... 1219
ATGTGAGTGA GAGTTTGGAA AATCAGGGTA GAATACAAGT TCAGGTTCCC TAGGACGATG 20173
.......... .......... .......... .......... .......... .......... 1219
ATATAATGTA GTACCATACT ACAAGAATTG ACTATGGAAT TTATTAATAT CTAGCTAGAA 20233
.......... .......... .......... .......... .......... .......... 1219
ACCAATATAA AAAAACAATC TACTCCCCTT TCTACTGCTG CTGATACTTC TACTCTTTTT 20293
.......... .......... .......... .......... .......... .......... 1219
TTTTTCTCTC TTGTACACCT TCTTGGCTGC TACACTTCTC TAGTTTCCAA TCATGACAAT 20353
.......... .......... .......... .......... .......... .......... 1219
ACATAAATGC TTGAGGAGCC CATAACAAAT AGTTCTACCC CACCCACCCA CACCCTTTCG 20413
.......... .......... .......... .......... .......... .......... 1219
TAGTAAAGTG TGCCGACAAC AGTTGGTGCC CTCTTCTCGA TGGTATCCAT TGCTTTTCTG 20473
.......... .......... .......... .......... .......... .......... 1219
CATGCACACA CAAACAAACA CTTCTAAATA CACATACTGA CTTGTCGTAT TGGCATGCAG 20533
.......... .......... .......... .......... .......... .......... 1219
TCATGCATTG AGACCAAATC CATCAGGACT GCATCCGCAC AACACAAAAT CTCACCATAC 20593
.......... .......... .......... .......... .......... .......... 1219
ATGCATACGG TGTCTTGGAT GTTTCTGTTG TTGGGGCGCT AATATGTACT TCTACCAAAA 20653
.......... .......... .......... .......... .......... .......... 1219
TGCAAGGACA AACTGTCCCA ATTTTACAGT AAAATAACTA TCATTGTGAA ACAGACTGTC 20713
.......... .......... .......... .......... .......... .......... 1219
AGCATCGCTC TCTAAGCTCA GTCTGTACAG CTTTTACCAA ATAAAAATAA TGCAATGGTT 20773
.......... .......... .......... .......... .......... .......... 1219
TTTGGAAAGA ATAAAGGTTT TAGTGGCACA CTAATTTCCA TAATTTGACC CTTCATGTTT 20833
.......... .......... .......... .......... .......... .......... 1219
ATGCTTTCAG TTCATTGGTA CTCCACATTG GATGGCACCA GAGGTCATTC AAGAAAGTCG 20893
|||||||| | |||||||||| |||||| ||| ||||| |||| | |||| |||
.......... TTCATTGGGA CTCCACATTG GATGGCCCCA GAGGTTATTC AGGAAAATCG 1269
TTATGATGGA AAGGTATCAT GCTATCATCT CTACGGTGTT CAGCTATGGA ATTGTTCATT 20953
||||||||| |||
TTATGATGGG AAG....... .......... .......... .......... .......... 1282
TTAGCAGCTT TTGTGGATGT TGCCATTTTA CTCTAAAGAC TTGGTGGCCG TAAATTTATG 21013
.......... .......... .......... .......... .......... .......... 1282
ATTGGGTTTT CAGTGAACAG GATTTCTTTA ATATTTTGTT TCTTTGGGTG TGGAATGTCC 21073
.......... .......... .......... .......... .......... .......... 1282
TTGCATATGG CAGAACAAGG TTACACGTAA ATTCATAAAA GCCATTAAAT AATTGTTATG 21133
.......... .......... .......... .......... .......... .......... 1282
GAACCCCTGC CAGTGCCAAA ACATGTTTAT TTCTTTTCCT TGTCTCTTGA TGGTTCCTCA 21193
.......... .......... .......... .......... .......... .......... 1282
AGCAAAAAAA AAATAAAATA AAATCATTAC CTACTACTAA GCCTCCAAAA CAAGTCTACT 21253
.......... .......... .......... .......... .......... .......... 1282
GGTTGCAATT AGGGATGAAA ACGGATCGGA TACGGACGGA TATCATCGAT ATCATATTTG 21313
.......... .......... .......... .......... .......... .......... 1282
TTTTCGTATT TCTGGTCGAA TTCGGATTCG AATACGGATA ATGTCAACTA TATCGGATAA 21373
.......... .......... .......... .......... .......... .......... 1282
GATACGATTG GATGTCGACA TCATAAATAT ATGATTTAAG TACTCGGATA CGGATACGGT 21433
.......... .......... .......... .......... .......... .......... 1282
ATCGGATGTA GAACATTCGA ACTCGGATAC GAACTGGTCT GAATCCCTCT AAACGAATTC 21493
.......... .......... .......... .......... .......... .......... 1282
GGTCTCAAAT ACGGTCGGAA AATATCCGTA CCGTTTTCAT CCCTAGTTGC AATGTTGAGA 21553
.......... .......... .......... .......... .......... .......... 1282
AAATTATTTT GGCAGCTGGA ATTCTTCCTT TAGTTTGTCT TACCAAAACA TTTGTTCTTG 21613
.......... .......... .......... .......... .......... .......... 1282
TTTCCTGCAC CAGGTAGATG TTTGGGCATT AGGTGTATCT GCAATTGAGA TGGCAGAGGT 21673
|| |||| | ||||| | ||||| || || ||||||| ||||||||
.......... ...GTTGATG TATGGGCTCT TGGTGTTTCA GCTATTGAGA TGGCAGAG.. 1327
AGACATTGTT CCTTGCTTCT TTCTTTTTTT GACTGTACAC TTTTGTTTTT AATTTTGTGT 21733
.......... .......... .......... .......... .......... .......... 1327
CGTGACAATG CTTTTTAATA TTTATTTTGT ATCTCTGACT GTAGGGCATG CCACCAAGAT 21793
|| | || |||||||
.......... .......... .......... .......... ....GGGCTC CCTCCAAGAT 1343
CCACTGTACA TCCAATGAGA GTAAGAGATG CTTCTCAATG CCTGTTAGTA TCTGCAGTTA 21853
| | || || ||| |||||
CATCAGTTCA TCCGATGAGG .......... .......... .......... .......... 1363
ATGAGGCTAA TAGGTTATAA CAGAATTAAA AAAATCTGCT CTATCTTTGG TGCACTGTAC 21913
.......... .......... .......... .......... .......... .......... 1363
TTTTTATCTC TTTACTGTCA AGGGCGTCGA GGGACAGGGT AGGAGGATCC CGGCTACGTA 21973
.......... .......... .......... .......... .......... .......... 1363
GTTCATAGAC CAATCTGTGG TGTGGGGCGG AGGTTTTACC CCTCAGTGCC CGATTGTTTC 22033
.......... .......... .......... .......... .......... .......... 1363
AGCAAAGGTA GATTAGGGAA TTGGGATAAT TGTTCTTTCT TGATTATCAT CATACGAGTA 22093
.......... .......... .......... .......... .......... .......... 1363
CAAGAATATA TAGGCCATTC GGCCATAACA GCTTGGAGCC AATTGCTCCT AAATCTAAGG 22153
.......... .......... .......... .......... .......... .......... 1363
CCATTATCGG CTCTCCTGCC TTCTAGGCTC TCGCCTGTTC AGTGTGCTCT GCATGCGTGG 22213
.......... .......... .......... .......... .......... .......... 1363
TGACCGCGCC TACGGTTCTG CTGGTGCGCC ATCTGCGGCT CTGCGAGCAT CCTGGGCGTG 22273
.......... .......... .......... .......... .......... .......... 1363
CCGTTTCCTT GTGTAGGCGC GGTCCCACAT GACATTTACT TTCTTTCTGA TGCATTTGCT 22333
.......... .......... .......... .......... .......... .......... 1363
TCTTTACTTT GCCTTGGTAA ATATTTGGTA TACATATCAA TATATTGTTT CATCTTCGTT 22393
.......... .......... .......... .......... .......... .......... 1363
TAGCATGAAT GCTTGATAGA CCGACTAACG ATCTCTCTTC CCCCTTCCCT TATCTCAGGT 22453
||
.......... .......... .......... .......... .......... ........GT 1365
TATCTTCATG ATATCCAGTG AACCAGCACC AATGCTGGAG GATAAGG 22500
| | |||||| ||||||| | | ||||| || |||||| ||| ||||| |
TTTGTTCATG ATATCCATCG AGCCAGCTCC AATGCTCGAG GATAAAG 1412
********************************************************************************
EST sequence 92 +strand (File: 20172268+)
1 GGTCGATTTC AATACCAGAC AGTGTGACTA GGGAAGATCC TTGTACTAAG TATGAATTGC
61 TCCACGAGCT AGGGAAAGGT TCATATGGGG CTGTTTATAA AGCTTGAGAC TTGAGGACTT
121 CAGAAATGGT TGCCATCAAA GTCATATCGT TATCTGAAGG GGAGGAAGGC TATGAAGAAA
181 TTCGAGGTGA AATTGAGATG TTACAGCAGT GCAGTCATCC AAATGTTGTT CGCTATCTTG
241 GGAGCTACCA AGGAGAAGAG TACCTTTGGA TAGTAATGGA GTATTGTGGG GGTGGAAGTG
301 TTGCTGACTT AATGAATGTC ACAGATGAGG CTTTAGAGGA GTATCAAATA GCATTTATTT
361 GTCGAGAGGC ATTGAAGGTG ATTTTGGTGT TGCTGCGCAG CTGACTAGAA CCATGTCCAA
421 ACGTAACACG TTTATCGGCA CTCCCCATTG GATGGCACCA GAAGTTATTC AAGAAAGTCG
481 TTATGATGGG AAGGTAGATG TATGGGCTCT TGGAGTGTCT GCTATTGAAA TGGCGGAGGG
541 TCTTCCTCCT AGGGCAACAG TGCATCCAAT GAGGGTGCTA TTTATGATAT CCATTGAACC
601 AGCTCCAATG CTCGAGGATA AAGAGAAATG GTCTCTTGTA TTCCATGATT TTGTTGCCAA
661 GTGCCTTACA AAAGACACCC GACTTCGTCC AATTGCCTCC GAGATGCTAA AGCACAAATT
721 CATCG
Predicted gene structure (within gDNA segment 17414 to 22387):
Exon 1 18165 18218 ( 54 n); cDNA 19 72 ( 54 n); score: 0.778
Intron 1 18219 18328 ( 110 n); Pd: 0.941 (s: 0.76), Pa: 0.878 (s: 0.68)
Exon 2 18329 18417 ( 89 n); cDNA 73 161 ( 89 n); score: 0.663
Intron 2 18418 18626 ( 209 n); Pd: 0.993 (s: 0.60), Pa: 0.998 (s: 0.84)
Exon 3 18627 18734 ( 108 n); cDNA 162 269 ( 108 n); score: 0.843
Intron 3 18735 18859 ( 125 n); Pd: 0.980 (s: 0.86), Pa: 0.787 (s: 0.80)
Exon 4 18860 18967 ( 108 n); cDNA 270 377 ( 108 n); score: 0.769
Intron 4 18968 19270 ( 303 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.88)
Exon 5 19271 19323 ( 53 n); cDNA 378 430 ( 53 n); score: 0.887
Intron 5 19324 20843 (1520 n); Pd: 0.770 (s: 0.88), Pa: 0.962 (s: 0.88)
Exon 6 20844 20906 ( 63 n); cDNA 431 493 ( 63 n); score: 0.889
Intron 6 20907 21626 ( 720 n); Pd: 0.929 (s: 0.92), Pa: 0.999 (s: 0.80)
Exon 7 21627 21671 ( 45 n); cDNA 494 538 ( 45 n); score: 0.800
Intron 7 21672 21777 ( 106 n); Pd: 0.992 (s: 0.80), Pa: 0.998 (s: 0)
Exon 8 21778 21813 ( 36 n); cDNA 539 574 ( 36 n); score: 0.694
MATCH 21326110+ 20172268+ 0.796 556 0.767 C
PGS_21326110+_20172268+ (18165 18218,18329 18417,18627 18734,18860 18967,19271 19323,20844 20906,21627 21671,21778 21813)
Alignment (genomic DNA sequence = upper lines):
ACAGTGTTAC CAGAGAGGAT CCTTCCACCA AGTACGAGCT GCTCCATGAG CTTGGTGCGC 18224
||||||| || || || ||| |||| || | |||| || | |||||| ||| || |
ACAGTGTGAC TAGGGAAGAT CCTTGTACTA AGTATGAATT GCTCCACGAG CTAG...... 72
CTCTTGCTCT GGAATTATTG TTTCATTAGT TCTGTATGTC TACTTGTAGA ATGGCTGAAG 18284
.......... .......... .......... .......... .......... .......... 72
CTTTGAGCTG TTTTGCGAAA TGCAAAATTC AATTGGGAAT GCAGGGAAAG GCTCATATGG 18344
|||||| | ||||||||
.......... .......... .......... .......... ....GGAAAG GTTCATATGG 88
TGCAGTGTAC AAAGCAAGGG ATCTCAGAAC GCAGGAGCTT GTGGCTGTCA AGATTATCTC 18404
|| || || ||||| | | | | || || || | || || ||| | | || ||
GGCTGTTTAT AAAGCTTGAG ACTTGAGGAC TTCAGAAATG GTTGCCATCA AAGTCATATC 148
ACTAACAGAA GGGGTTAGTT TCTAATTTTC TATTACAAAG TTCTGTGAAT ATTCTGAAAG 18464
|| | ||| |||
GTTATCTGAA GGG....... .......... .......... .......... .......... 161
GCCACCCGAG ACATATTTCA TATTTGGCAA CCATATTGCT TTTGTTGTGA GCATTTTGTT 18524
.......... .......... .......... .......... .......... .......... 161
TGCATGGGCT CAATTGTGAG AGAATCTCAT AAATGTGGTT GCTGTCTGTT TTCCGAGTCG 18584
.......... .......... .......... .......... .......... .......... 161
TTGCATTTTT CCAAAATATA AGTATGTATC TTTGGTTTTC AGGAAGAAGG ATATGAAGAC 18644
|| ||||| ||||||||
.......... .......... .......... .......... ..GAGGAAGG CTATGAAGAA 179
ATACGGGGAG AAATTGAGAT GCTGCAGCAG TGTAGCCATC CAAATGTTGT CCGCTACTTT 18704
|| || || | |||||||||| | | |||||| || || |||| |||||||||| ||||| ||
ATTCGAGGTG AAATTGAGAT GTTACAGCAG TGCAGTCATC CAAATGTTGT TCGCTATCTT 239
GGAAGCTACC AAGGAGAGGA CTACCTATGG GTACAATCAA ATAGCCTGAT AGTATCCATT 18764
|| ||||||| ||||||| || ||||| |||
GGGAGCTACC AAGGAGAAGA GTACCTTTGG .......... .......... .......... 269
TTATTAACAT TAAGAAATAA CTATCATTGG GAGATTTCTC TACTTCTTGA GTCATTTAAC 18824
.......... .......... .......... .......... .......... .......... 269
ATGGGCTTGA TGCAAATGCG ATTCTCAACT TACAGATAGT TATGGAGTAC TGTGGTGGTG 18884
||||| |||||||| ||||| ||||
.......... .......... .......... .....ATAGT AATGGAGTAT TGTGGGGGTG 294
GAAGTGTTGC TGATTTGATA GGCATCACAG AGGAGCCTCT TGATGAATCC CAAATAGCTT 18944
|||||||||| ||| || || |||||| | ||| || | || || | |||||||| |
GAAGTGTTGC TGACTTAATG AATGTCACAG ATGAGGCTTT AGAGGAGTAT CAAATAGCAT 354
ATATATGTAG AGAAGCACTA AAGGTTCTAA CATAGTTGCA TCAGATTTGA AGTATTTGCT 19004
||| ||| | ||| ||| | |||
TTATTTGTCG AGAGGCATTG AAG....... .......... .......... .......... 377
GCCTTGTTGG GCAACTAAAT GTATTTGGAT ATTGAACTTT TGCGTGCTTA TTTTCTTCCA 19064
.......... .......... .......... .......... .......... .......... 377
GGGCCTTGCT TACCTGCACT CCATTTTTAA AGTTCATAGA GATATTAAGG GTGGCAACAT 19124
.......... .......... .......... .......... .......... .......... 377
TCTTCTAACT GAGCAAGGCG AGGTGAAGTT GGGTAAGCAC ATTTGTTTTC TTCAAAAGTT 19184
.......... .......... .......... .......... .......... .......... 377
TTAGTTTGCA TTCTTAGCAC CCATATTTCT GCATGTCCTG ACTCTGTGGT CGGCATGCTG 19244
.......... .......... .......... .......... .......... .......... 377
TGGCGCCACA ACAATGTGCA AAACAGGTGA TTTTGGTGTA GCTGCCCAGC TGACAAGAAC 19304
|||| ||||||||| ||||| |||| |||| |||||
.......... .......... ......GTGA TTTTGGTGTT GCTGCGCAGC TGACTAGAAC 411
CATGTCAAAG CGCAACACGG TATTCTAAAC AGTGTTTGTT TTGCCATTCA AATCCATAGT 19364
|||||| || || ||||||
CATGTCCAAA CGTAACACG. .......... .......... .......... .......... 430
TCAAGAAACT TCACATCGAT GTAACAAACA AAATGAAGTG GCAGATGAAA CTTGTCCATG 19424
.......... .......... .......... .......... .......... .......... 430
CCAGTTTACC ATAAGCGGAC CCATTTGTGC TTGTGCATAG TTCTTCAATG TGATGGTACT 19484
.......... .......... .......... .......... .......... .......... 430
TTTATGGGAA CTTGAAGCAA GTCTGTGTTG GAAAATGATT GCTGTGAAGT CCTAACTGTT 19544
.......... .......... .......... .......... .......... .......... 430
TCTTTAAGTG TCATACTGCA AGTGCATTAT GGTCTATTAG GTTTAAAATG AAAAATAAGA 19604
.......... .......... .......... .......... .......... .......... 430
AAGTATATAT TTGTTATCTA GTATGCCTCG CCTAATTCCT TGGCATTTCT TCCATTCTTT 19664
.......... .......... .......... .......... .......... .......... 430
GAAACCCATA CTGGTGGAAC CTAGTTGAAG TGGTTCCTGT ACAAATACTC TCTGCACTGC 19724
.......... .......... .......... .......... .......... .......... 430
TTCTTCTCCC TTTCTTGTCG TGACAGCCTC TAGTCCCCAT ATATCCCATT ATGAATCTGC 19784
.......... .......... .......... .......... .......... .......... 430
TCACTCCCCC ATTTGGCTTC TTCCTAGGCC ACCACTCAAC AATTCTTCTG TTCTTGATGA 19844
.......... .......... .......... .......... .......... .......... 430
CTGCGATGCT CCATTCGATC TGGCAAATTG CTGCCTTGCT GGAGCTATTC AAGAACGTAG 19904
.......... .......... .......... .......... .......... .......... 430
AGGGTTACTG TGACATTAGC ATATCAAACC AACAGGTCTG TTGGAAATCA TAATCACAAT 19964
.......... .......... .......... .......... .......... .......... 430
GAACCTCCAA GTGGGAAATA TTATCCAGGG CGTCATCTTA CCTCCAAGTT ATGGACTCTG 20024
.......... .......... .......... .......... .......... .......... 430
CTTGACACTA GAGGAAGAGT TAGTGCACAG GGAGTCCAAA TCAGGTAGGA TAGTTGATAG 20084
.......... .......... .......... .......... .......... .......... 430
TTCATAATTG GCTAGATCTA GGAGGAGGTA TGTGAGTGAG AGTTTGGAAA ATCAGGGTAG 20144
.......... .......... .......... .......... .......... .......... 430
AATACAAGTT CAGGTTCCCT AGGACGATGA TATAATGTAG TACCATACTA CAAGAATTGA 20204
.......... .......... .......... .......... .......... .......... 430
CTATGGAATT TATTAATATC TAGCTAGAAA CCAATATAAA AAAACAATCT ACTCCCCTTT 20264
.......... .......... .......... .......... .......... .......... 430
CTACTGCTGC TGATACTTCT ACTCTTTTTT TTTTCTCTCT TGTACACCTT CTTGGCTGCT 20324
.......... .......... .......... .......... .......... .......... 430
ACACTTCTCT AGTTTCCAAT CATGACAATA CATAAATGCT TGAGGAGCCC ATAACAAATA 20384
.......... .......... .......... .......... .......... .......... 430
GTTCTACCCC ACCCACCCAC ACCCTTTCGT AGTAAAGTGT GCCGACAACA GTTGGTGCCC 20444
.......... .......... .......... .......... .......... .......... 430
TCTTCTCGAT GGTATCCATT GCTTTTCTGC ATGCACACAC AAACAAACAC TTCTAAATAC 20504
.......... .......... .......... .......... .......... .......... 430
ACATACTGAC TTGTCGTATT GGCATGCAGT CATGCATTGA GACCAAATCC ATCAGGACTG 20564
.......... .......... .......... .......... .......... .......... 430
CATCCGCACA ACACAAAATC TCACCATACA TGCATACGGT GTCTTGGATG TTTCTGTTGT 20624
.......... .......... .......... .......... .......... .......... 430
TGGGGCGCTA ATATGTACTT CTACCAAAAT GCAAGGACAA ACTGTCCCAA TTTTACAGTA 20684
.......... .......... .......... .......... .......... .......... 430
AAATAACTAT CATTGTGAAA CAGACTGTCA GCATCGCTCT CTAAGCTCAG TCTGTACAGC 20744
.......... .......... .......... .......... .......... .......... 430
TTTTACCAAA TAAAAATAAT GCAATGGTTT TTGGAAAGAA TAAAGGTTTT AGTGGCACAC 20804
.......... .......... .......... .......... .......... .......... 430
TAATTTCCAT AATTTGACCC TTCATGTTTA TGCTTTCAGT TCATTGGTAC TCCACATTGG 20864
| | || || || ||| ||||||
.......... .......... .......... .........T TTATCGGCAC TCCCCATTGG 451
ATGGCACCAG AGGTCATTCA AGAAAGTCGT TATGATGGAA AGGTATCATG CTATCATCTC 20924
|||||||||| | || ||||| |||||||||| |||||||| | ||
ATGGCACCAG AAGTTATTCA AGAAAGTCGT TATGATGGGA AG........ .......... 493
TACGGTGTTC AGCTATGGAA TTGTTCATTT TAGCAGCTTT TGTGGATGTT GCCATTTTAC 20984
.......... .......... .......... .......... .......... .......... 493
TCTAAAGACT TGGTGGCCGT AAATTTATGA TTGGGTTTTC AGTGAACAGG ATTTCTTTAA 21044
.......... .......... .......... .......... .......... .......... 493
TATTTTGTTT CTTTGGGTGT GGAATGTCCT TGCATATGGC AGAACAAGGT TACACGTAAA 21104
.......... .......... .......... .......... .......... .......... 493
TTCATAAAAG CCATTAAATA ATTGTTATGG AACCCCTGCC AGTGCCAAAA CATGTTTATT 21164
.......... .......... .......... .......... .......... .......... 493
TCTTTTCCTT GTCTCTTGAT GGTTCCTCAA GCAAAAAAAA AATAAAATAA AATCATTACC 21224
.......... .......... .......... .......... .......... .......... 493
TACTACTAAG CCTCCAAAAC AAGTCTACTG GTTGCAATTA GGGATGAAAA CGGATCGGAT 21284
.......... .......... .......... .......... .......... .......... 493
ACGGACGGAT ATCATCGATA TCATATTTGT TTTCGTATTT CTGGTCGAAT TCGGATTCGA 21344
.......... .......... .......... .......... .......... .......... 493
ATACGGATAA TGTCAACTAT ATCGGATAAG ATACGATTGG ATGTCGACAT CATAAATATA 21404
.......... .......... .......... .......... .......... .......... 493
TGATTTAAGT ACTCGGATAC GGATACGGTA TCGGATGTAG AACATTCGAA CTCGGATACG 21464
.......... .......... .......... .......... .......... .......... 493
AACTGGTCTG AATCCCTCTA AACGAATTCG GTCTCAAATA CGGTCGGAAA ATATCCGTAC 21524
.......... .......... .......... .......... .......... .......... 493
CGTTTTCATC CCTAGTTGCA ATGTTGAGAA AATTATTTTG GCAGCTGGAA TTCTTCCTTT 21584
.......... .......... .......... .......... .......... .......... 493
AGTTTGTCTT ACCAAAACAT TTGTTCTTGT TTCCTGCACC AGGTAGATGT TTGGGCATTA 21644
|||||||| ||||| |
.......... .......... .......... .......... ..GTAGATGT ATGGGCTCTT 511
GGTGTATCTG CAATTGAGAT GGCAGAGGTA GACATTGTTC CTTGCTTCTT TCTTTTTTTG 21704
|| || |||| | ||||| || ||| |||
GGAGTGTCTG CTATTGAAAT GGCGGAG... .......... .......... .......... 538
ACTGTACACT TTTGTTTTTA ATTTTGTGTC GTGACAATGC TTTTTAATAT TTATTTTGTA 21764
.......... .......... .......... .......... .......... .......... 538
TCTCTGACTG TAGGGCATGC CACCAAGATC CACTGTACAT CCAATGAGA 21813
|| | | | || || | || || ||| ||||||||
.......... ...GGTCTTC CTCCTAGGGC AACAGTGCAT CCAATGAGG 574
********************************************************************************
EST sequence 95 +strand (File: 13607727+)
1 GGTCGATTTC AATACCAGAC AGTGTGACTA GGGAAGATCC TTGTACTAAG TATGAATTGC
61 TCCACGAGCT AGGGAAAGGT TCATATGGGG CTGTTTATAA AGCTTGAGAC TTGAGGACTT
121 CAGAAATGGT TGCCATCAAA GTCATATCGT TATCTGAAGG GGAGGAAGGC TATGAAGAAA
181 TTCGAGGTGA AATTGAGATG TTACAGCAGT GCAGTCATCC AAATGTTGTT CGCTATCTTG
241 GGAGCTACCA AGGAGAAGAG TACCTTTGGA TAGTAATGGA GTATTGTGGG GGTGGAAGTG
301 TTGCTGACTT AATGAATGTC ACAGATGAGG CTTTAGAGGA GTATCAAATA GCATTTATTT
361 GTCGAGAGGC ATTGAAGGTG ATTTTGGTGT TGCTGCGCAG CTGACTAGAA CCATGTCCAA
421 ACGTAACACG TTTATCGGCA CTCCCCATTG GATGGCACCA GAAGTTATTC AAGAAAGTCG
481 TTATGATGGG AAGGTAGATG TATGGGCTCT TGGAGTGTCT GCTATTGAAA TGGCGGAGGG
541 TCTTCCTCCT AGGGCAACAG TGCATCCAAT GAGGGTGCTA TTTATGATAT CCATTGAACC
601 AGC
Predicted gene structure (within gDNA segment 17414 to 21777):
Exon 1 18165 18218 ( 54 n); cDNA 19 72 ( 54 n); score: 0.778
Intron 1 18219 18328 ( 110 n); Pd: 0.941 (s: 0.76), Pa: 0.878 (s: 0.68)
Exon 2 18329 18417 ( 89 n); cDNA 73 161 ( 89 n); score: 0.663
Intron 2 18418 18626 ( 209 n); Pd: 0.993 (s: 0.60), Pa: 0.998 (s: 0.84)
Exon 3 18627 18734 ( 108 n); cDNA 162 269 ( 108 n); score: 0.843
Intron 3 18735 18859 ( 125 n); Pd: 0.980 (s: 0.86), Pa: 0.787 (s: 0.80)
Exon 4 18860 18967 ( 108 n); cDNA 270 377 ( 108 n); score: 0.769
Intron 4 18968 19270 ( 303 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.88)
Exon 5 19271 19323 ( 53 n); cDNA 378 430 ( 53 n); score: 0.887
Intron 5 19324 20843 (1520 n); Pd: 0.770 (s: 0.88), Pa: 0.962 (s: 0.88)
Exon 6 20844 20906 ( 63 n); cDNA 431 493 ( 63 n); score: 0.889
Intron 6 20907 21626 ( 720 n); Pd: 0.929 (s: 0.92), Pa: 0.999 (s: 0.80)
Exon 7 21627 21671 ( 45 n); cDNA 494 538 ( 45 n); score: 0.800
MATCH 21326110+ 13607727+ 0.796 520 0.862 C
PGS_21326110+_13607727+ (18165 18218,18329 18417,18627 18734,18860 18967,19271 19323,20844 20906,21627 21671)
Alignment (genomic DNA sequence = upper lines):
ACAGTGTTAC CAGAGAGGAT CCTTCCACCA AGTACGAGCT GCTCCATGAG CTTGGTGCGC 18224
||||||| || || || ||| |||| || | |||| || | |||||| ||| || |
ACAGTGTGAC TAGGGAAGAT CCTTGTACTA AGTATGAATT GCTCCACGAG CTAG...... 72
CTCTTGCTCT GGAATTATTG TTTCATTAGT TCTGTATGTC TACTTGTAGA ATGGCTGAAG 18284
.......... .......... .......... .......... .......... .......... 72
CTTTGAGCTG TTTTGCGAAA TGCAAAATTC AATTGGGAAT GCAGGGAAAG GCTCATATGG 18344
|||||| | ||||||||
.......... .......... .......... .......... ....GGAAAG GTTCATATGG 88
TGCAGTGTAC AAAGCAAGGG ATCTCAGAAC GCAGGAGCTT GTGGCTGTCA AGATTATCTC 18404
|| || || ||||| | | | | || || || | || || ||| | | || ||
GGCTGTTTAT AAAGCTTGAG ACTTGAGGAC TTCAGAAATG GTTGCCATCA AAGTCATATC 148
ACTAACAGAA GGGGTTAGTT TCTAATTTTC TATTACAAAG TTCTGTGAAT ATTCTGAAAG 18464
|| | ||| |||
GTTATCTGAA GGG....... .......... .......... .......... .......... 161
GCCACCCGAG ACATATTTCA TATTTGGCAA CCATATTGCT TTTGTTGTGA GCATTTTGTT 18524
.......... .......... .......... .......... .......... .......... 161
TGCATGGGCT CAATTGTGAG AGAATCTCAT AAATGTGGTT GCTGTCTGTT TTCCGAGTCG 18584
.......... .......... .......... .......... .......... .......... 161
TTGCATTTTT CCAAAATATA AGTATGTATC TTTGGTTTTC AGGAAGAAGG ATATGAAGAC 18644
|| ||||| ||||||||
.......... .......... .......... .......... ..GAGGAAGG CTATGAAGAA 179
ATACGGGGAG AAATTGAGAT GCTGCAGCAG TGTAGCCATC CAAATGTTGT CCGCTACTTT 18704
|| || || | |||||||||| | | |||||| || || |||| |||||||||| ||||| ||
ATTCGAGGTG AAATTGAGAT GTTACAGCAG TGCAGTCATC CAAATGTTGT TCGCTATCTT 239
GGAAGCTACC AAGGAGAGGA CTACCTATGG GTACAATCAA ATAGCCTGAT AGTATCCATT 18764
|| ||||||| ||||||| || ||||| |||
GGGAGCTACC AAGGAGAAGA GTACCTTTGG .......... .......... .......... 269
TTATTAACAT TAAGAAATAA CTATCATTGG GAGATTTCTC TACTTCTTGA GTCATTTAAC 18824
.......... .......... .......... .......... .......... .......... 269
ATGGGCTTGA TGCAAATGCG ATTCTCAACT TACAGATAGT TATGGAGTAC TGTGGTGGTG 18884
||||| |||||||| ||||| ||||
.......... .......... .......... .....ATAGT AATGGAGTAT TGTGGGGGTG 294
GAAGTGTTGC TGATTTGATA GGCATCACAG AGGAGCCTCT TGATGAATCC CAAATAGCTT 18944
|||||||||| ||| || || |||||| | ||| || | || || | |||||||| |
GAAGTGTTGC TGACTTAATG AATGTCACAG ATGAGGCTTT AGAGGAGTAT CAAATAGCAT 354
ATATATGTAG AGAAGCACTA AAGGTTCTAA CATAGTTGCA TCAGATTTGA AGTATTTGCT 19004
||| ||| | ||| ||| | |||
TTATTTGTCG AGAGGCATTG AAG....... .......... .......... .......... 377
GCCTTGTTGG GCAACTAAAT GTATTTGGAT ATTGAACTTT TGCGTGCTTA TTTTCTTCCA 19064
.......... .......... .......... .......... .......... .......... 377
GGGCCTTGCT TACCTGCACT CCATTTTTAA AGTTCATAGA GATATTAAGG GTGGCAACAT 19124
.......... .......... .......... .......... .......... .......... 377
TCTTCTAACT GAGCAAGGCG AGGTGAAGTT GGGTAAGCAC ATTTGTTTTC TTCAAAAGTT 19184
.......... .......... .......... .......... .......... .......... 377
TTAGTTTGCA TTCTTAGCAC CCATATTTCT GCATGTCCTG ACTCTGTGGT CGGCATGCTG 19244
.......... .......... .......... .......... .......... .......... 377
TGGCGCCACA ACAATGTGCA AAACAGGTGA TTTTGGTGTA GCTGCCCAGC TGACAAGAAC 19304
|||| ||||||||| ||||| |||| |||| |||||
.......... .......... ......GTGA TTTTGGTGTT GCTGCGCAGC TGACTAGAAC 411
CATGTCAAAG CGCAACACGG TATTCTAAAC AGTGTTTGTT TTGCCATTCA AATCCATAGT 19364
|||||| || || ||||||
CATGTCCAAA CGTAACACG. .......... .......... .......... .......... 430
TCAAGAAACT TCACATCGAT GTAACAAACA AAATGAAGTG GCAGATGAAA CTTGTCCATG 19424
.......... .......... .......... .......... .......... .......... 430
CCAGTTTACC ATAAGCGGAC CCATTTGTGC TTGTGCATAG TTCTTCAATG TGATGGTACT 19484
.......... .......... .......... .......... .......... .......... 430
TTTATGGGAA CTTGAAGCAA GTCTGTGTTG GAAAATGATT GCTGTGAAGT CCTAACTGTT 19544
.......... .......... .......... .......... .......... .......... 430
TCTTTAAGTG TCATACTGCA AGTGCATTAT GGTCTATTAG GTTTAAAATG AAAAATAAGA 19604
.......... .......... .......... .......... .......... .......... 430
AAGTATATAT TTGTTATCTA GTATGCCTCG CCTAATTCCT TGGCATTTCT TCCATTCTTT 19664
.......... .......... .......... .......... .......... .......... 430
GAAACCCATA CTGGTGGAAC CTAGTTGAAG TGGTTCCTGT ACAAATACTC TCTGCACTGC 19724
.......... .......... .......... .......... .......... .......... 430
TTCTTCTCCC TTTCTTGTCG TGACAGCCTC TAGTCCCCAT ATATCCCATT ATGAATCTGC 19784
.......... .......... .......... .......... .......... .......... 430
TCACTCCCCC ATTTGGCTTC TTCCTAGGCC ACCACTCAAC AATTCTTCTG TTCTTGATGA 19844
.......... .......... .......... .......... .......... .......... 430
CTGCGATGCT CCATTCGATC TGGCAAATTG CTGCCTTGCT GGAGCTATTC AAGAACGTAG 19904
.......... .......... .......... .......... .......... .......... 430
AGGGTTACTG TGACATTAGC ATATCAAACC AACAGGTCTG TTGGAAATCA TAATCACAAT 19964
.......... .......... .......... .......... .......... .......... 430
GAACCTCCAA GTGGGAAATA TTATCCAGGG CGTCATCTTA CCTCCAAGTT ATGGACTCTG 20024
.......... .......... .......... .......... .......... .......... 430
CTTGACACTA GAGGAAGAGT TAGTGCACAG GGAGTCCAAA TCAGGTAGGA TAGTTGATAG 20084
.......... .......... .......... .......... .......... .......... 430
TTCATAATTG GCTAGATCTA GGAGGAGGTA TGTGAGTGAG AGTTTGGAAA ATCAGGGTAG 20144
.......... .......... .......... .......... .......... .......... 430
AATACAAGTT CAGGTTCCCT AGGACGATGA TATAATGTAG TACCATACTA CAAGAATTGA 20204
.......... .......... .......... .......... .......... .......... 430
CTATGGAATT TATTAATATC TAGCTAGAAA CCAATATAAA AAAACAATCT ACTCCCCTTT 20264
.......... .......... .......... .......... .......... .......... 430
CTACTGCTGC TGATACTTCT ACTCTTTTTT TTTTCTCTCT TGTACACCTT CTTGGCTGCT 20324
.......... .......... .......... .......... .......... .......... 430
ACACTTCTCT AGTTTCCAAT CATGACAATA CATAAATGCT TGAGGAGCCC ATAACAAATA 20384
.......... .......... .......... .......... .......... .......... 430
GTTCTACCCC ACCCACCCAC ACCCTTTCGT AGTAAAGTGT GCCGACAACA GTTGGTGCCC 20444
.......... .......... .......... .......... .......... .......... 430
TCTTCTCGAT GGTATCCATT GCTTTTCTGC ATGCACACAC AAACAAACAC TTCTAAATAC 20504
.......... .......... .......... .......... .......... .......... 430
ACATACTGAC TTGTCGTATT GGCATGCAGT CATGCATTGA GACCAAATCC ATCAGGACTG 20564
.......... .......... .......... .......... .......... .......... 430
CATCCGCACA ACACAAAATC TCACCATACA TGCATACGGT GTCTTGGATG TTTCTGTTGT 20624
.......... .......... .......... .......... .......... .......... 430
TGGGGCGCTA ATATGTACTT CTACCAAAAT GCAAGGACAA ACTGTCCCAA TTTTACAGTA 20684
.......... .......... .......... .......... .......... .......... 430
AAATAACTAT CATTGTGAAA CAGACTGTCA GCATCGCTCT CTAAGCTCAG TCTGTACAGC 20744
.......... .......... .......... .......... .......... .......... 430
TTTTACCAAA TAAAAATAAT GCAATGGTTT TTGGAAAGAA TAAAGGTTTT AGTGGCACAC 20804
.......... .......... .......... .......... .......... .......... 430
TAATTTCCAT AATTTGACCC TTCATGTTTA TGCTTTCAGT TCATTGGTAC TCCACATTGG 20864
| | || || || ||| ||||||
.......... .......... .......... .........T TTATCGGCAC TCCCCATTGG 451
ATGGCACCAG AGGTCATTCA AGAAAGTCGT TATGATGGAA AGGTATCATG CTATCATCTC 20924
|||||||||| | || ||||| |||||||||| |||||||| | ||
ATGGCACCAG AAGTTATTCA AGAAAGTCGT TATGATGGGA AG........ .......... 493
TACGGTGTTC AGCTATGGAA TTGTTCATTT TAGCAGCTTT TGTGGATGTT GCCATTTTAC 20984
.......... .......... .......... .......... .......... .......... 493
TCTAAAGACT TGGTGGCCGT AAATTTATGA TTGGGTTTTC AGTGAACAGG ATTTCTTTAA 21044
.......... .......... .......... .......... .......... .......... 493
TATTTTGTTT CTTTGGGTGT GGAATGTCCT TGCATATGGC AGAACAAGGT TACACGTAAA 21104
.......... .......... .......... .......... .......... .......... 493
TTCATAAAAG CCATTAAATA ATTGTTATGG AACCCCTGCC AGTGCCAAAA CATGTTTATT 21164
.......... .......... .......... .......... .......... .......... 493
TCTTTTCCTT GTCTCTTGAT GGTTCCTCAA GCAAAAAAAA AATAAAATAA AATCATTACC 21224
.......... .......... .......... .......... .......... .......... 493
TACTACTAAG CCTCCAAAAC AAGTCTACTG GTTGCAATTA GGGATGAAAA CGGATCGGAT 21284
.......... .......... .......... .......... .......... .......... 493
ACGGACGGAT ATCATCGATA TCATATTTGT TTTCGTATTT CTGGTCGAAT TCGGATTCGA 21344
.......... .......... .......... .......... .......... .......... 493
ATACGGATAA TGTCAACTAT ATCGGATAAG ATACGATTGG ATGTCGACAT CATAAATATA 21404
.......... .......... .......... .......... .......... .......... 493
TGATTTAAGT ACTCGGATAC GGATACGGTA TCGGATGTAG AACATTCGAA CTCGGATACG 21464
.......... .......... .......... .......... .......... .......... 493
AACTGGTCTG AATCCCTCTA AACGAATTCG GTCTCAAATA CGGTCGGAAA ATATCCGTAC 21524
.......... .......... .......... .......... .......... .......... 493
CGTTTTCATC CCTAGTTGCA ATGTTGAGAA AATTATTTTG GCAGCTGGAA TTCTTCCTTT 21584
.......... .......... .......... .......... .......... .......... 493
AGTTTGTCTT ACCAAAACAT TTGTTCTTGT TTCCTGCACC AGGTAGATGT TTGGGCATTA 21644
|||||||| ||||| |
.......... .......... .......... .......... ..GTAGATGT ATGGGCTCTT 511
GGTGTATCTG CAATTGAGAT GGCAGAG 21671
|| || |||| | ||||| || ||| |||
GGAGTGTCTG CTATTGAAAT GGCGGAG 538
********************************************************************************
EST sequence 91 +strand (File: 13613476+)
1 GGGTACATTG AGGCCACAGG GCAGTAAGGT GTCGTCGAGT TCAATACCGG ACAGTGTGAC
61 TAGGGAAGAT CCTTGTACTA AGTATGAATT GCTCCACGAG CTAGGGAAGG GTTCATATGG
121 GGCTGTTTAT AAAGCTCGAG ACTTGAGGAC TTCAGAAATG GTTGCCATCA AAGTCATATC
181 ATTATCTGAA GGGGAGGAAG GCTATGAAGA AATTCGAGGT GAAATTGAGA TGTTGCAGCA
241 GTGCAGTCAT CCAAATGTTG TTCGCTATCT TGGGAGCTAC CAAGGAGAAG AGTACCTTTG
301 GATAGTAATG GAGTATTGTG GGGGTGGAAG TGTTGCTGAC TTAATGAATG TCACAGATGA
361 GGCTTTAGAG GAGTATCAAA TAGCATTTAT TTGTCGAGAG GCATTGAAGG GCCTCTCCTA
421 TCTGCACTCG ATTTTTAAAG TACACAGAGA TATTAAAGGT GGCAATATCT TACTGACTGA
481 TCAAGGAGAG GTTAAGTTAG GTGATTTTGG TGTTGCTGCG CAGCTGACTA GAACCATGTC
541 CAAACGT
Predicted gene structure (within gDNA segment 17254 to 19758):
Exon 1 18165 18218 ( 54 n); cDNA 51 104 ( 54 n); score: 0.778
Intron 1 18219 18328 ( 110 n); Pd: 0.941 (s: 0.76), Pa: 0.878 (s: 0.66)
Exon 2 18329 18417 ( 89 n); cDNA 105 193 ( 89 n); score: 0.663
Intron 2 18418 18626 ( 209 n); Pd: 0.993 (s: 0.62), Pa: 0.998 (s: 0.86)
Exon 3 18627 18734 ( 108 n); cDNA 194 301 ( 108 n); score: 0.852
Intron 3 18735 18859 ( 125 n); Pd: 0.980 (s: 0.86), Pa: 0.787 (s: 0.80)
Exon 4 18860 18967 ( 108 n); cDNA 302 409 ( 108 n); score: 0.769
Intron 4 18968 19065 ( 98 n); Pd: 0.000 (s: 0.72), Pa: 0.953 (s: 0.84)
Exon 5 19066 19156 ( 91 n); cDNA 410 500 ( 91 n); score: 0.813
Intron 5 19157 19270 ( 114 n); Pd: 0.984 (s: 0.80), Pa: 0.000 (s: 0.87)
Exon 6 19271 19317 ( 47 n); cDNA 501 547 ( 47 n); score: 0.872
MATCH 21326110+ 13613476+ 0.778 497 0.909 C
PGS_21326110+_13613476+ (18165 18218,18329 18417,18627 18734,18860 18967,19066 19156,19271 19317)
Alignment (genomic DNA sequence = upper lines):
ACAGTGTTAC CAGAGAGGAT CCTTCCACCA AGTACGAGCT GCTCCATGAG CTTGGTGCGC 18224
||||||| || || || ||| |||| || | |||| || | |||||| ||| || |
ACAGTGTGAC TAGGGAAGAT CCTTGTACTA AGTATGAATT GCTCCACGAG CTAG...... 104
CTCTTGCTCT GGAATTATTG TTTCATTAGT TCTGTATGTC TACTTGTAGA ATGGCTGAAG 18284
.......... .......... .......... .......... .......... .......... 104
CTTTGAGCTG TTTTGCGAAA TGCAAAATTC AATTGGGAAT GCAGGGAAAG GCTCATATGG 18344
|||| | | ||||||||
.......... .......... .......... .......... ....GGAAGG GTTCATATGG 120
TGCAGTGTAC AAAGCAAGGG ATCTCAGAAC GCAGGAGCTT GTGGCTGTCA AGATTATCTC 18404
|| || || ||||| | | | | || || || | || || ||| | | || ||
GGCTGTTTAT AAAGCTCGAG ACTTGAGGAC TTCAGAAATG GTTGCCATCA AAGTCATATC 180
ACTAACAGAA GGGGTTAGTT TCTAATTTTC TATTACAAAG TTCTGTGAAT ATTCTGAAAG 18464
| || | ||| |||
ATTATCTGAA GGG....... .......... .......... .......... .......... 193
GCCACCCGAG ACATATTTCA TATTTGGCAA CCATATTGCT TTTGTTGTGA GCATTTTGTT 18524
.......... .......... .......... .......... .......... .......... 193
TGCATGGGCT CAATTGTGAG AGAATCTCAT AAATGTGGTT GCTGTCTGTT TTCCGAGTCG 18584
.......... .......... .......... .......... .......... .......... 193
TTGCATTTTT CCAAAATATA AGTATGTATC TTTGGTTTTC AGGAAGAAGG ATATGAAGAC 18644
|| ||||| ||||||||
.......... .......... .......... .......... ..GAGGAAGG CTATGAAGAA 211
ATACGGGGAG AAATTGAGAT GCTGCAGCAG TGTAGCCATC CAAATGTTGT CCGCTACTTT 18704
|| || || | |||||||||| | |||||||| || || |||| |||||||||| ||||| ||
ATTCGAGGTG AAATTGAGAT GTTGCAGCAG TGCAGTCATC CAAATGTTGT TCGCTATCTT 271
GGAAGCTACC AAGGAGAGGA CTACCTATGG GTACAATCAA ATAGCCTGAT AGTATCCATT 18764
|| ||||||| ||||||| || ||||| |||
GGGAGCTACC AAGGAGAAGA GTACCTTTGG .......... .......... .......... 301
TTATTAACAT TAAGAAATAA CTATCATTGG GAGATTTCTC TACTTCTTGA GTCATTTAAC 18824
.......... .......... .......... .......... .......... .......... 301
ATGGGCTTGA TGCAAATGCG ATTCTCAACT TACAGATAGT TATGGAGTAC TGTGGTGGTG 18884
||||| |||||||| ||||| ||||
.......... .......... .......... .....ATAGT AATGGAGTAT TGTGGGGGTG 326
GAAGTGTTGC TGATTTGATA GGCATCACAG AGGAGCCTCT TGATGAATCC CAAATAGCTT 18944
|||||||||| ||| || || |||||| | ||| || | || || | |||||||| |
GAAGTGTTGC TGACTTAATG AATGTCACAG ATGAGGCTTT AGAGGAGTAT CAAATAGCAT 386
ATATATGTAG AGAAGCACTA AAGGTTCTAA CATAGTTGCA TCAGATTTGA AGTATTTGCT 19004
||| ||| | ||| ||| | |||
TTATTTGTCG AGAGGCATTG AAG....... .......... .......... .......... 409
GCCTTGTTGG GCAACTAAAT GTATTTGGAT ATTGAACTTT TGCGTGCTTA TTTTCTTCCA 19064
.......... .......... .......... .......... .......... .......... 409
GGGCCTTGCT TACCTGCACT CCATTTTTAA AGTTCATAGA GATATTAAGG GTGGCAACAT 19124
||||| | || ||||||| | |||||||| ||| || ||| |||||||| | ||||||| ||
.GGCCTCTCC TATCTGCACT CGATTTTTAA AGTACACAGA GATATTAAAG GTGGCAATAT 468
TCTTCTAACT GAGCAAGGCG AGGTGAAGTT GGGTAAGCAC ATTTGTTTTC TTCAAAAGTT 19184
| || ||| || ||||| | |||| ||||| |
CTTACTGACT GATCAAGGAG AGGTTAAGTT AG........ .......... .......... 500
TTAGTTTGCA TTCTTAGCAC CCATATTTCT GCATGTCCTG ACTCTGTGGT CGGCATGCTG 19244
.......... .......... .......... .......... .......... .......... 500
TGGCGCCACA ACAATGTGCA AAACAGGTGA TTTTGGTGTA GCTGCCCAGC TGACAAGAAC 19304
|||| ||||||||| ||||| |||| |||| |||||
.......... .......... ......GTGA TTTTGGTGTT GCTGCGCAGC TGACTAGAAC 534
CATGTCAAAG CGC 19317
|||||| || ||
CATGTCCAAA CGT 547
********************************************************************************
EST sequence 96 +strand (File: 21922100+)
1 GGGTACATTT GAGGCCACAG GGCAGTAAGG TGTCGTCGAG TTCAATACCG GACAGTGTGA
61 CTAGGGAAGA TCCTTGTACT AAGTATGAAT TGCTCCACGA GCTAGGGAAG GGTTCATATG
121 GGGCTGTTTA TAAAGCTCGA GACTTGAGGA CTTCAGAAAT GGTTGCCATC AAAGTCATAT
181 CATTATCTGA AGGGGAGGAA GGCTATGAAG AAATTCGAGG TGAAATTGAG ATGTTGCAGC
241 AGTGCAGTCA TCCAAATGTT GTTCGCTATC TTGGGAGCTA CCAAGGAGAA GAGTACCTTT
301 GGATAGTAAT GGAGTATTGT GGGGGTGGAA GTGTTGCTGA CTTAATGAAT GTCACAGATG
361 AGGCTTTAGA GGAGTATCAA ATAGCATTTA TTTGTCGAGA GGCATTGAAG GGCCTCTCCT
421 ATCTGCACTC GATTTTTAAA GTACACAGAG ATATTAAAGG TGGCAATATC TTACTGACTG
Predicted gene structure (within gDNA segment 17249 to 19902):
Exon 1 18165 18218 ( 54 n); cDNA 52 105 ( 54 n); score: 0.778
Intron 1 18219 18328 ( 110 n); Pd: 0.941 (s: 0.76), Pa: 0.878 (s: 0.66)
Exon 2 18329 18417 ( 89 n); cDNA 106 194 ( 89 n); score: 0.663
Intron 2 18418 18626 ( 209 n); Pd: 0.993 (s: 0.62), Pa: 0.998 (s: 0.86)
Exon 3 18627 18734 ( 108 n); cDNA 195 302 ( 108 n); score: 0.852
Intron 3 18735 18859 ( 125 n); Pd: 0.980 (s: 0.86), Pa: 0.787 (s: 0.80)
Exon 4 18860 18967 ( 108 n); cDNA 303 410 ( 108 n); score: 0.769
Intron 4 18968 19065 ( 98 n); Pd: 0.000 (s: 0.72), Pa: 0.953 (s: 0.84)
Exon 5 19066 19135 ( 70 n); cDNA 411 480 ( 70 n); score: 0.814
MATCH 21326110+ 21922100+ 0.776 429 0.894 C
PGS_21326110+_21922100+ (18165 18218,18329 18417,18627 18734,18860 18967,19066 19135)
Alignment (genomic DNA sequence = upper lines):
ACAGTGTTAC CAGAGAGGAT CCTTCCACCA AGTACGAGCT GCTCCATGAG CTTGGTGCGC 18224
||||||| || || || ||| |||| || | |||| || | |||||| ||| || |
ACAGTGTGAC TAGGGAAGAT CCTTGTACTA AGTATGAATT GCTCCACGAG CTAG...... 105
CTCTTGCTCT GGAATTATTG TTTCATTAGT TCTGTATGTC TACTTGTAGA ATGGCTGAAG 18284
.......... .......... .......... .......... .......... .......... 105
CTTTGAGCTG TTTTGCGAAA TGCAAAATTC AATTGGGAAT GCAGGGAAAG GCTCATATGG 18344
|||| | | ||||||||
.......... .......... .......... .......... ....GGAAGG GTTCATATGG 121
TGCAGTGTAC AAAGCAAGGG ATCTCAGAAC GCAGGAGCTT GTGGCTGTCA AGATTATCTC 18404
|| || || ||||| | | | | || || || | || || ||| | | || ||
GGCTGTTTAT AAAGCTCGAG ACTTGAGGAC TTCAGAAATG GTTGCCATCA AAGTCATATC 181
ACTAACAGAA GGGGTTAGTT TCTAATTTTC TATTACAAAG TTCTGTGAAT ATTCTGAAAG 18464
| || | ||| |||
ATTATCTGAA GGG....... .......... .......... .......... .......... 194
GCCACCCGAG ACATATTTCA TATTTGGCAA CCATATTGCT TTTGTTGTGA GCATTTTGTT 18524
.......... .......... .......... .......... .......... .......... 194
TGCATGGGCT CAATTGTGAG AGAATCTCAT AAATGTGGTT GCTGTCTGTT TTCCGAGTCG 18584
.......... .......... .......... .......... .......... .......... 194
TTGCATTTTT CCAAAATATA AGTATGTATC TTTGGTTTTC AGGAAGAAGG ATATGAAGAC 18644
|| ||||| ||||||||
.......... .......... .......... .......... ..GAGGAAGG CTATGAAGAA 212
ATACGGGGAG AAATTGAGAT GCTGCAGCAG TGTAGCCATC CAAATGTTGT CCGCTACTTT 18704
|| || || | |||||||||| | |||||||| || || |||| |||||||||| ||||| ||
ATTCGAGGTG AAATTGAGAT GTTGCAGCAG TGCAGTCATC CAAATGTTGT TCGCTATCTT 272
GGAAGCTACC AAGGAGAGGA CTACCTATGG GTACAATCAA ATAGCCTGAT AGTATCCATT 18764
|| ||||||| ||||||| || ||||| |||
GGGAGCTACC AAGGAGAAGA GTACCTTTGG .......... .......... .......... 302
TTATTAACAT TAAGAAATAA CTATCATTGG GAGATTTCTC TACTTCTTGA GTCATTTAAC 18824
.......... .......... .......... .......... .......... .......... 302
ATGGGCTTGA TGCAAATGCG ATTCTCAACT TACAGATAGT TATGGAGTAC TGTGGTGGTG 18884
||||| |||||||| ||||| ||||
.......... .......... .......... .....ATAGT AATGGAGTAT TGTGGGGGTG 327
GAAGTGTTGC TGATTTGATA GGCATCACAG AGGAGCCTCT TGATGAATCC CAAATAGCTT 18944
|||||||||| ||| || || |||||| | ||| || | || || | |||||||| |
GAAGTGTTGC TGACTTAATG AATGTCACAG ATGAGGCTTT AGAGGAGTAT CAAATAGCAT 387
ATATATGTAG AGAAGCACTA AAGGTTCTAA CATAGTTGCA TCAGATTTGA AGTATTTGCT 19004
||| ||| | ||| ||| | |||
TTATTTGTCG AGAGGCATTG AAG....... .......... .......... .......... 410
GCCTTGTTGG GCAACTAAAT GTATTTGGAT ATTGAACTTT TGCGTGCTTA TTTTCTTCCA 19064
.......... .......... .......... .......... .......... .......... 410
GGGCCTTGCT TACCTGCACT CCATTTTTAA AGTTCATAGA GATATTAAGG GTGGCAACAT 19124
||||| | || ||||||| | |||||||| ||| || ||| |||||||| | ||||||| ||
.GGCCTCTCC TATCTGCACT CGATTTTTAA AGTACACAGA GATATTAAAG GTGGCAATAT 469
TCTTCTAACT G 19135
| || ||| |
CTTACTGACT G 480
********************************************************************************
EST sequence 94 +strand (File: 17069519+)
1 GGTGACTAGG GAAGATCCTT GTACTAAGTA TGAATTGCTC CACGAGCTAG GGAAGGGTTC
61 ATATGGGGCT GTTTATAAAG CTCGAGACTT GAGGACTTCA GAAATGGTTG CCATCAAAGT
121 CATATCATTA TCTGAAGGGG AGGAAGGCTA TGAAGAAATT CGAGGTGAAA TTGAGATGTT
181 GCAGCAGTGC AGTCATCCAA ATGTTGTTCG CTATCTTGGG AGCTACCAAG GCGAAGAGTA
241 CCTTTGGATA GTAATGGAGT ATTGTGGGGG TGGAAGTGTT GCTGACTTAA TGAATGTCAC
301 AGATGAGGCT TTAGAGGAGT ATCAAATAGC ATTTATTTGT CGAGAGGCAT TGAAGGGCCT
361 CTCCTATCTG CACTCTATTT TTTAAGTACA CAGAGA
Predicted gene structure (within gDNA segment 17524 to 19757):
Exon 1 18169 18218 ( 50 n); cDNA 1 50 ( 50 n); score: 0.740
Intron 1 18219 18328 ( 110 n); Pd: 0.941 (s: 0.74), Pa: 0.878 (s: 0.66)
Exon 2 18329 18417 ( 89 n); cDNA 51 139 ( 89 n); score: 0.663
Intron 2 18418 18626 ( 209 n); Pd: 0.993 (s: 0.62), Pa: 0.998 (s: 0.86)
Exon 3 18627 18734 ( 108 n); cDNA 140 247 ( 108 n); score: 0.843
Intron 3 18735 18859 ( 125 n); Pd: 0.980 (s: 0.84), Pa: 0.787 (s: 0.80)
Exon 4 18860 18967 ( 108 n); cDNA 248 355 ( 108 n); score: 0.769
Intron 4 18968 19065 ( 98 n); Pd: 0.000 (s: 0.72), Pa: 0.953 (s: 0.80)
Exon 5 19066 19106 ( 41 n); cDNA 356 396 ( 41 n); score: 0.805
MATCH 21326110+ 17069519+ 0.761 396 1.000 C
PGS_21326110+_17069519+ (18169 18218,18329 18417,18627 18734,18860 18967,19066 19106)
Alignment (genomic DNA sequence = upper lines):
TGTTACCAGA GAGGATCCTT CCACCAAGTA CGAGCTGCTC CATGAGCTTG GTGCGCCTCT 18228
|| || || || ||||||| || ||||| || ||||| || ||||| |
GGTGACTAGG GAAGATCCTT GTACTAAGTA TGAATTGCTC CACGAGCTAG .......... 50
TGCTCTGGAA TTATTGTTTC ATTAGTTCTG TATGTCTACT TGTAGAATGG CTGAAGCTTT 18288
.......... .......... .......... .......... .......... .......... 50
GAGCTGTTTT GCGAAATGCA AAATTCAATT GGGAATGCAG GGAAAGGCTC ATATGGTGCA 18348
|||| || || |||||| ||
.......... .......... .......... .......... GGAAGGGTTC ATATGGGGCT 70
GTGTACAAAG CAAGGGATCT CAGAACGCAG GAGCTTGTGG CTGTCAAGAT TATCTCACTA 18408
|| || |||| | | || | || || || | || | | |||| | || ||| ||
GTTTATAAAG CTCGAGACTT GAGGACTTCA GAAATGGTTG CCATCAAAGT CATATCATTA 130
ACAGAAGGGG TTAGTTTCTA ATTTTCTATT ACAAAGTTCT GTGAATATTC TGAAAGGCCA 18468
| ||||||
TCTGAAGGG. .......... .......... .......... .......... .......... 139
CCCGAGACAT ATTTCATATT TGGCAACCAT ATTGCTTTTG TTGTGAGCAT TTTGTTTGCA 18528
.......... .......... .......... .......... .......... .......... 139
TGGGCTCAAT TGTGAGAGAA TCTCATAAAT GTGGTTGCTG TCTGTTTTCC GAGTCGTTGC 18588
.......... .......... .......... .......... .......... .......... 139
ATTTTTCCAA AATATAAGTA TGTATCTTTG GTTTTCAGGA AGAAGGATAT GAAGACATAC 18648
|| ||||| ||| ||||| || |
.......... .......... .......... ........GA GGAAGGCTAT GAAGAAATTC 161
GGGGAGAAAT TGAGATGCTG CAGCAGTGTA GCCATCCAAA TGTTGTCCGC TACTTTGGAA 18708
| || ||||| ||||||| || |||||||| | | |||||||| |||||| ||| || |||| |
GAGGTGAAAT TGAGATGTTG CAGCAGTGCA GTCATCCAAA TGTTGTTCGC TATCTTGGGA 221
GCTACCAAGG AGAGGACTAC CTATGGGTAC AATCAAATAG CCTGATAGTA TCCATTTTAT 18768
|||||||||| || || ||| || |||
GCTACCAAGG CGAAGAGTAC CTTTGG.... .......... .......... .......... 247
TAACATTAAG AAATAACTAT CATTGGGAGA TTTCTCTACT TCTTGAGTCA TTTAACATGG 18828
.......... .......... .......... .......... .......... .......... 247
GCTTGATGCA AATGCGATTC TCAACTTACA GATAGTTATG GAGTACTGTG GTGGTGGAAG 18888
||||| ||| ||||| |||| | ||||||||
.......... .......... .......... .ATAGTAATG GAGTATTGTG GGGGTGGAAG 276
TGTTGCTGAT TTGATAGGCA TCACAGAGGA GCCTCTTGAT GAATCCCAAA TAGCTTATAT 18948
||||||||| || || ||||||| || | || | || || | |||| |||| | |||
TGTTGCTGAC TTAATGAATG TCACAGATGA GGCTTTAGAG GAGTATCAAA TAGCATTTAT 336
ATGTAGAGAA GCACTAAAGG TTCTAACATA GTTGCATCAG ATTTGAAGTA TTTGCTGCCT 19008
||| |||| ||| | |||
TTGTCGAGAG GCATTGAAG. .......... .......... .......... .......... 355
TGTTGGGCAA CTAAATGTAT TTGGATATTG AACTTTTGCG TGCTTATTTT CTTCCAGGGC 19068
|||
.......... .......... .......... .......... .......... .......GGC 358
CTTGCTTACC TGCACTCCAT TTTTAAAGTT CATAGAGA 19106
|| | || | ||||||| || |||| |||| || |||||
CTCTCCTATC TGCACTCTAT TTTTTAAGTA CACAGAGA 396
********************************************************************************
EST sequence 81 +strand (File: 22136893+)
1 ATGGATCATA ACTCGCCGAA ATCTCGTCGG AGCCGGAAAC CGGAGCCCAA ACCTGACATA
61 TACTCCACTT TCGTAGTCCA CTCCGACTCT GATTCTGATC AAGGTCGAGA TCGAGACAAA
121 CGTAAAGCCA AACCTGAGGA AGACGAAAAT GTCGATTTAT ACGCTACAAT GGTCTACAAA
181 GGCGATAGTG ACGGAGAAGG AGAGGAAGAT GATGATGACG ATTCTATGCT TCCTCCTCTT
241 CTCAAGCGTC TTCCCAAGGA TTTCGGAGGC GGCGCGTCGC TCGATTACGA CGACGACGAC
301 GGTGATGAAT CTGGAGATTT CGGTACGATG ATTGTGAAAA CAGATCGGAG TAGTCATAGT
361 AAGAAGAACA GTCCGTACTC GTCCAAACCG CGAATGGGAG TTAGTCCTAG GAGGAGAGCG
421 AGAGGCGGAG ATGAGGAATC TTCTGATGAA GAAGACGAAG AAGAAGATGA TGATGACGAC
481 GACGGAGACT ACGGTACGTT TGTTGTGAAA TCTAAGGATA AAAAGGGAAA GAAGAAAGAC
541 AAGGAGATTG ATATGACAAC TATGGGAAGA GCTGTTGCGA GTATGCAGAA ATCAAATTTT
601 GGTGGTAAGA CTCGGAAATT GGATCCTTCC TCTTCTTCTT CGAAACTTCA CGGTGAAGAT
661 AATCGGAAAA TGCAGCAGCA AAACAGGAAA GGATCATATG GATCTGTATA CAAGGCAAGA
721 GATTTGAAAA CATCAGAGAT TGTTGCTGTG AAAGTCATAT CACTTACTGA AGGGGAGGAG
781 GGGTATGAAG AGATCCGGGG AGAAATTGAG ATGCTGCAGC AATGTAATCA TCCTAATGTT
841 GTCCGCTACC TAGGGAGTTA CCAAGGAGAA GATTATCTTT GGATAGTGAT GGAGTATTGT
901 GGAGGTGGAA GTGTTGCTGA TCTTATGAAT GTTACTGAGG AGGCGTTAGA GGAGTATCAG
961 ATAGCATATA TATGTCGGGA GGCGTTGAAG GGCCTTGCAT ACTTGCACTC AATATATAAA
1021 GTCCATAGAG ACATTAAAGG TGGAAATATC TTGTTAACTG AACAAGGAGA GGTCAAGTTG
1081 GGTGACTTTG GGGTTGCAGC TCAACTTACT CGCACTATGT CGAAGCGAAA CACGTTCATT
1141 GGGACTCCAC ATTGGATGGC CCCAGAGGTT ATTCAGGAAA ATCGTTATGA TGGGAAGGTT
1201 GATGTATGGG CTCTTGGTGT TTCAGCTATT GAGATGGCAG AGGGGCTCCC TCCAAGATCA
1261 TCAGTTCATC CGATGAGGGT TTTGTTCATG ATATCCATCG AGCCAGCTCC AATGCTCGAG
1321 GATAAAGAAA AATGGTCCCT GGTCTTTCAT GATTTTGTTG CAAAGTGCCT CACAAAGGAA
1381 CCACGTCTTC GCCCAACTGC AGCTGAGATG CTTAAGCACA AATTTGTTGA GAGATGTAAA
1441 ACTGGGGCTT CTGCAATGTC GCCAAAGATT GAGAAGTCCA GACAAATCAG AGCTACAATG
1501 GCTCTGCAAG CGCAAAGTGT TGTCGCACCT TCTTTGGAGG ACACTTCAAC ACTGGGTCCA
1561 AAATCAAGCG AGGAGCTTGG AATTACTGTT CCATCTAAAC CTCCTCAAAA TTCGACCGAA
1621 GCACCTCTAA CCAGCACCCT GAATCGGCAG CATATTACTG GCAACACTGT GTTGGCTGGA
1681 GAAGGTGGTG ACTTCGGAAC TATGATCGTT CATGGTGAGG ATGAGACAGA GGAGAGTGAC
1741 TCCAGGTCTC AGCTTGTCAG AGAAAAAGAA TCTTCATCTT CTCAGTTTGA AGGTGTTCCT
1801 CGCGAATTCC CAGGAGAAGA ATTACCTGAC TCATGGATAC ATGACAAAAA GAAGCCTCCG
1861 GCTATTGATC TTCCAGTTGA AGCTTCGATT TCACAGAGCA TGCAGGCAAG TTCATCTCAT
1921 GAGCATAGAA CCAAGCTACA TAACATAGCT GGAACACAGA TGGAAGGTGG CAGTGATGCA
1981 AGTGGTAGTA CCTTGAAAAA TGAAACTGTT GGCAGGAAAG CTTTTGCTTT GCAAGATAAG
2041 TTATGGTCAA TCTACGCAGC TGGAAACACA GTACCGATAC CGTTCTTGAG AGCAACAGAT
2101 ATATCCCCAA TCGCACTCTT GTCAGAGAAC ATGATCGGAG GCATGCAACA AGATGGGAAT
2161 GGAACTGTAG CCGTCGAAGC ACTTCAGGAG CTCTTCACTT CTTCTGATCC CCAATCCAAA
2221 AAGGGCCGAC GTGGACAAAA CGAGATGCCT CTTCCTCCAA GCGTATACCA AAGACTGACA
2281 ACAAGCTCTT CTCTGATGAA CCTTGCACAA GTTTTAGCCT ACCACAGAGC GTGTTACGAG
2341 GAAATGCCGC TGCAGGAATT GCAAGCAACG CAGGAGCAGC AAACCATTCA GAATCTGTGC
2401 GATACTCTTC GCACTATTCT CCGCCTCTAA ATAGTCTTGT GTTCATATCT GTTGCTCTCT
Predicted gene structure (within gDNA segment 14866 to 22500):
Exon 1 14866 14879 ( 14 n); cDNA 666 678 ( 13 n); score: 0.643
Intron 1 14880 15135 ( 256 n); Pd: 0.978 (s: 0), Pa: 0.000 (s: 0)
Exon 2 15136 15142 ( 7 n); cDNA 679 685 ( 7 n); score: 0.857
Intron 2 15143 18328 (3186 n); Pd: 0.635 (s: 0), Pa: 0.878 (s: 0.72)
Exon 3 18329 18417 ( 89 n); cDNA 686 774 ( 89 n); score: 0.742
Intron 3 18418 18626 ( 209 n); Pd: 0.993 (s: 0.70), Pa: 0.998 (s: 0.88)
Exon 4 18627 18734 ( 108 n); cDNA 775 882 ( 108 n); score: 0.843
Intron 4 18735 18859 ( 125 n); Pd: 0.980 (s: 0.82), Pa: 0.787 (s: 0.80)
Exon 5 18860 18967 ( 108 n); cDNA 883 990 ( 108 n); score: 0.741
Intron 5 18968 19065 ( 98 n); Pd: 0.000 (s: 0.68), Pa: 0.953 (s: 0.84)
Exon 6 19066 19156 ( 91 n); cDNA 991 1081 ( 91 n); score: 0.813
Intron 6 19157 19270 ( 114 n); Pd: 0.984 (s: 0.78), Pa: 0.000 (s: 0.74)
Exon 7 19271 19323 ( 53 n); cDNA 1082 1134 ( 53 n); score: 0.755
Intron 7 19324 20843 (1520 n); Pd: 0.770 (s: 0.74), Pa: 0.962 (s: 0.90)
Exon 8 20844 20906 ( 63 n); cDNA 1135 1197 ( 63 n); score: 0.905
Intron 8 20907 21626 ( 720 n); Pd: 0.929 (s: 0.90), Pa: 0.999 (s: 0.82)
Exon 9 21627 21671 ( 45 n); cDNA 1198 1242 ( 45 n); score: 0.822
Intron 9 21672 21777 ( 106 n); Pd: 0.992 (s: 0.82), Pa: 0.998 (s: 0)
Exon 10 21778 21813 ( 36 n); cDNA 1243 1278 ( 36 n); score: 0.722
Intron 10 21814 22451 ( 638 n); Pd: 0.596 (s: 0), Pa: 0.894 (s: 0.84)
Exon 11 22452 22500 ( 49 n); cDNA 1279 1327 ( 49 n); score: 0.837
MATCH 21326110+ 22136893+ 0.797 663 0.270 C
PGS_21326110+_22136893+ (14866 14879,15136 15142,18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500)
Alignment (genomic DNA sequence = upper lines):
GATGTTGCTG CCAGGTACGC TACTCCTGTA CTGGGAGCTT GTATGTGACT GCTTCTAAAG 14925
|| ||| | |||
GAAAATGCAG -CAG...... .......... .......... .......... .......... 678
ATGGTTCTCT GCGCATTTGG GATGGAGTAT CTGCTGAATG TGTTCGACCT ATTATTGGAG 14985
.......... .......... .......... .......... .......... .......... 678
CACATGGATC TGCAGAAGCT ACTAGCGCAA TTTTCACCAG AGATGAGAGG TAAGCGAGCT 15045
.......... .......... .......... .......... .......... .......... 678
ACCAGCATGT CTAAGGTGCT CTTCCCTCAA GATAAAATCC AGTCATTGTT TGGTTTGAAG 15105
.......... .......... .......... .......... .......... .......... 678
AACAGAGAGA AAGGCATATG CTGTATGATT CAAGACAGTA ACTACTTCAA ACCCTGTTTG 15165
||| |||
.......... .......... .......... CAAAACA... .......... .......... 685
GAATGTGGGA ATCTTGTAGT GATTCTGAAT GATTTATAAC ATGTCCTGGA TAATTTCCTG 15225
.......... .......... .......... .......... .......... .......... 685
TGTTTCAGAC GTGTCGTAAC TTTATAACAC GAATAACTCT TTCTCCTTTA CCCTACTATT 15285
.......... .......... .......... .......... .......... .......... 685
TCACCACTAA ACAACTAACT TGCCTATAAA CACTTTTTAG ACTTCTTCTG AAAGGCCTAG 15345
.......... .......... .......... .......... .......... .......... 685
TGTTTATGTG GTTATATGCA GCGTGAATGC ACTTGCATAT AAGATTGATC TAAAAAATTG 15405
.......... .......... .......... .......... .......... .......... 685
ATGTAGTGAA CTTTGACTAC CCGAAGTATA TGCTTAGATA GTTCATGGAT TTCTTTCATA 15465
.......... .......... .......... .......... .......... .......... 685
AAACTGCACA CTGTATTCTG GTTATCTGTT ATGAAGTTTA CTACGTTCTT TCAGGTATGT 15525
.......... .......... .......... .......... .......... .......... 685
CCTATCTTGT GGGAAAGATT CTTGTGTCAA GTTATGGGAA GTTGGCACTG GACGACTTGT 15585
.......... .......... .......... .......... .......... .......... 685
GAAGCAATAT GCAGGAGCCA TTCGCAGACA ATTTCGTTGT CAGGTTAGTT TCTCTGTGTT 15645
.......... .......... .......... .......... .......... .......... 685
TCTATAAGAT TATTATTTTT TCCTGATTTA AATTTACTCG TGTGCCATAT ATATTATTTT 15705
.......... .......... .......... .......... .......... .......... 685
TACCCAAAAT TTTAGGAAAC AAAATATTGC AATTCTTTAA TTTGAAAATA GGCTGGTTTG 15765
.......... .......... .......... .......... .......... .......... 685
AGCTTGCAGC TTAGGATAAC AACATACCTA ACCTTGCTAT GATAGACAAT AAATATGATA 15825
.......... .......... .......... .......... .......... .......... 685
ATAACTGTTC TTACTATCCA GGCTGTCTTC AATGAAACCG AAGAATTTGT TCTATCAGTT 15885
.......... .......... .......... .......... .......... .......... 685
GATGAACAAA ACAATGAGGT AAATTCCAAA TTGAGAACAG TATATATATT TGTATTTCAG 15945
.......... .......... .......... .......... .......... .......... 685
CAAGCTTAAC TATGATACGT CACTCTTCAG GTTGTCGTCT GGGATGCACT TACTGCAGAA 16005
.......... .......... .......... .......... .......... .......... 685
AAGGTTGCAA GATTGCCCTC TGGCAGCACT GGTGCTCCCA GATGGCTCGA CCACTCCCCA 16065
.......... .......... .......... .......... .......... .......... 685
GTTGAACCAG TTTTTGTTAT TTGTGGAAAT GATAGATCGA TCAGATTCTG GAAACAAACC 16125
.......... .......... .......... .......... .......... .......... 685
GTATAGCTTG TAGATTCAAC CATTCAAATC AAAAGTATGC TTTCAGTATT ACGTTTCAGG 16185
.......... .......... .......... .......... .......... .......... 685
AGGAATGTGC TCATGTAACT TTAGTTGTAT ATGGGAGAAA TTTGCATAAG CATTTTTTTT 16245
.......... .......... .......... .......... .......... .......... 685
ATTGGAAACT GCATAAGCAA TTGATTGATC TAATAGCAAA CCCCAATGAT ATGTTTTTTT 16305
.......... .......... .......... .......... .......... .......... 685
TTTGGCTCTG CATAGCTGAT GACAGTTGTA TGAACCCTTG ACCTGATTCT TATTGGTCAG 16365
.......... .......... .......... .......... .......... .......... 685
GCCCTTTTCG ATGATTTGCT ATTTTATCCC AATTGTGGAT TGCGGAATAT ATTTCTTCTT 16425
.......... .......... .......... .......... .......... .......... 685
CGAATGTAAT GATGGTCTCG CCCTACCACA TGTGTGATAG CCTATAAAAG TTCTACAACA 16485
.......... .......... .......... .......... .......... .......... 685
CATTATTGCA TTTCACTTAG GGCATGTTTA GATTGAAGAT GAAAATTTTT TAGGTCACAT 16545
.......... .......... .......... .......... .......... .......... 685
CGGATATGTC GGAAGGATGT CGGGAGGGGT TTTTAAAAAC TAATAAAAAA AACAAATTAC 16605
.......... .......... .......... .......... .......... .......... 685
ATAACTCGTC AGGAAACTGC AAGACGAATC TATTAAGTAT AATTAATCTA TTATTAGCAC 16665
.......... .......... .......... .......... .......... .......... 685
ATGTGGGTTA CTGTAGCACT TAAGGCTAAT CATGGACTAA CTAGGCTTAA AAAATTCATC 16725
.......... .......... .......... .......... .......... .......... 685
TCGCGATTTT CAACCAAACT GTGTAATTAT TTTTTATCTA CATTTAATGT TTTATGTATG 16785
.......... .......... .......... .......... .......... .......... 685
TGTCTAAAGA TTCAATGTGA TGGATGAAAA TTTTTTAGGT GGGAACTAAA CAGGGCCTTA 16845
.......... .......... .......... .......... .......... .......... 685
TATTTTTTAA AAAAGATGTG CAAGTGTCAG GCCTTGTTTA GTTTCGAAAA CTTTTTGGTT 16905
.......... .......... .......... .......... .......... .......... 685
TTTGAGACTG TAGCACTTTC GTTTTTATTT GACAAATATT GTCTAATCAT AGAGTAACTA 16965
.......... .......... .......... .......... .......... .......... 685
GGTTTAAAAG ATTTATCTCG CGATTTATAG GTAAACTGTG CAATTAGTTT TTATTTTTGT 17025
.......... .......... .......... .......... .......... .......... 685
ATATATTTAA TGCTTCATGC ATGTGTCGTA ATATTTGATG TGTTGAGAAA TTTTGAAAAG 17085
.......... .......... .......... .......... .......... .......... 685
TTTTTGGTTT TTGGGGTGAG TGGAGAAAAA AGAGAAGCTC CTTTCGAGGA AGCTCTCTGC 17145
.......... .......... .......... .......... .......... .......... 685
GGCCTGTGGC TGCGGGTGAC TGGGTGTGGT CGTGTGGGCC TAGCGGGACT GCGGGAAGGA 17205
.......... .......... .......... .......... .......... .......... 685
AGAATTTGAC CGGATTCTCT ATGTCACGTG GGCCTAGAAT GGGATGGCCC ATCCGAGCCC 17265
.......... .......... .......... .......... .......... .......... 685
GACCCATATT TGCCAGATTC GAGTGAACTG GCTCCAACTA AACAATTTTC CCCATTTGCC 17325
.......... .......... .......... .......... .......... .......... 685
ATTCCCGACG AGCACCTTCA CCGTCTCCTC CCACCTCGCG TGGCACGCCA TGGCTTTCTC 17385
.......... .......... .......... .......... .......... .......... 685
CCCGCGCTCG CCGTGGTCGC GTCCCAAGAG AAACGACGTC TACTCAACCT TCGTCGTCCA 17445
.......... .......... .......... .......... .......... .......... 685
CGGCGATGAC GACGAGGACG ACGCCCGCGG CAGCAGGCGC GGCAGGGGCC CGTCCACGCG 17505
.......... .......... .......... .......... .......... .......... 685
GGCGGAGGAA GACGAGGAGG AAGACCCCTC CTCGCTGCCT CCGCTTCTCC AGCGGCTCCC 17565
.......... .......... .......... .......... .......... .......... 685
CAAGGACTTC GGCGGCCCCT CCTTTGACGA AGACGAGGAC GCCTACTCCT CCGACCCCGA 17625
.......... .......... .......... .......... .......... .......... 685
CGATGCTTCC CTCTCCGCTA CGGTGGTCTT CAAGAGCGGC GCCCCGGCCT CCGCTCGATC 17685
.......... .......... .......... .......... .......... .......... 685
TCCGTTCCTG GATCTGCGGC GCTCCAGCCC CCGCGCTACC GATGACGACC CATACTCTAC 17745
.......... .......... .......... .......... .......... .......... 685
CTTCGTCGTC CACTCCACCG CACGCTCGGG GGGGACCTCC TCCAGCCCTC GAGGGTCCGC 17805
.......... .......... .......... .......... .......... .......... 685
CTCAGGCACA TTCATCCGTC GCTCCGGGGG CTCGTCCAGC CCTCACGAAT CCGTCTCTGG 17865
.......... .......... .......... .......... .......... .......... 685
CACATTCATC CGCCGGACTA GCACCCCGTC GAGCCCCCGG GACTCGGTCT CCGGCACATT 17925
.......... .......... .......... .......... .......... .......... 685
CATCCGCCGA CCAGGGAGCC CGTCGAGCCC CCGCGGGTCG TTCTCTGGCA CCTTCATTCG 17985
.......... .......... .......... .......... .......... .......... 685
CCACACCAGC GGGGGTTCCA GTTCCTATGA ATCTGCTTCT GGCGGCGGCG GGGGTTTCGG 18045
.......... .......... .......... .......... .......... .......... 685
GTCCTCTTTC TGGAGTCCAG CGGTGGAGCA GACAGAGGAG CTCCGGCAAC CGTCGCCTCT 18105
.......... .......... .......... .......... .......... .......... 685
GATGCAGCAA CAACAGCAGC AGCATTCAAG GCGGAAGCCA TCAGTGAGCT CGGCGCCAGA 18165
.......... .......... .......... .......... .......... .......... 685
CAGTGTTACC AGAGAGGATC CTTCCACCAA GTACGAGCTG CTCCATGAGC TTGGTGCGCC 18225
.......... .......... .......... .......... .......... .......... 685
TCTTGCTCTG GAATTATTGT TTCATTAGTT CTGTATGTCT ACTTGTAGAA TGGCTGAAGC 18285
.......... .......... .......... .......... .......... .......... 685
TTTGAGCTGT TTTGCGAAAT GCAAAATTCA ATTGGGAATG CAGGGAAAGG CTCATATGGT 18345
||||||| ||||||||
.......... .......... .......... .......... ...GGAAAGG ATCATATGGA 702
GCAGTGTACA AAGCAAGGGA TCTCAGAACG CAGGAGCTTG TGGCTGTCAA GATTATCTCA 18405
| || |||| | ||||| || | | | ||| ||| ||| | ||||| || | || |||
TCTGTATACA AGGCAAGAGA TTTGAAAACA TCAGAGATTG TTGCTGTGAA AGTCATATCA 762
CTAACAGAAG GGGTTAGTTT CTAATTTTCT ATTACAAAGT TCTGTGAATA TTCTGAAAGG 18465
|| || |||| ||
CTTACTGAAG GG........ .......... .......... .......... .......... 774
CCACCCGAGA CATATTTCAT ATTTGGCAAC CATATTGCTT TTGTTGTGAG CATTTTGTTT 18525
.......... .......... .......... .......... .......... .......... 774
GCATGGGCTC AATTGTGAGA GAATCTCATA AATGTGGTTG CTGTCTGTTT TCCGAGTCGT 18585
.......... .......... .......... .......... .......... .......... 774
TGCATTTTTC CAAAATATAA GTATGTATCT TTGGTTTTCA GGAAGAAGGA TATGAAGACA 18645
|| || || |||||||| |
.......... .......... .......... .......... .GAGGAGGGG TATGAAGAGA 793
TACGGGGAGA AATTGAGATG CTGCAGCAGT GTAGCCATCC AAATGTTGTC CGCTACTTTG 18705
| |||||||| |||||||||| |||||||| | ||| ||||| ||||||||| |||||| | |
TCCGGGGAGA AATTGAGATG CTGCAGCAAT GTAATCATCC TAATGTTGTC CGCTACCTAG 853
GAAGCTACCA AGGAGAGGAC TACCTATGGG TACAATCAAA TAGCCTGATA GTATCCATTT 18765
| || ||||| |||||| || || || |||
GGAGTTACCA AGGAGAAGAT TATCTTTGG. .......... .......... .......... 882
TATTAACATT AAGAAATAAC TATCATTGGG AGATTTCTCT ACTTCTTGAG TCATTTAACA 18825
.......... .......... .......... .......... .......... .......... 882
TGGGCTTGAT GCAAATGCGA TTCTCAACTT ACAGATAGTT ATGGAGTACT GTGGTGGTGG 18885
||||| |||||||| | |||| |||||
.......... .......... .......... ....ATAGTG ATGGAGTATT GTGGAGGTGG 908
AAGTGTTGCT GATTTGATAG GCATCACAGA GGAGCCTCTT GATGAATCCC AAATAGCTTA 18945
|||||||||| ||| | || | || || |||| | | || || | | | ||||| ||
AAGTGTTGCT GATCTTATGA ATGTTACTGA GGAGGCGTTA GAGGAGTATC AGATAGCATA 968
TATATGTAGA GAAGCACTAA AGGTTCTAAC ATAGTTGCAT CAGATTTGAA GTATTTGCTG 19005
||||||| | || || | | ||
TATATGTCGG GAGGCGTTGA AG........ .......... .......... .......... 990
CCTTGTTGGG CAACTAAATG TATTTGGATA TTGAACTTTT GCGTGCTTAT TTTCTTCCAG 19065
.......... .......... .......... .......... .......... .......... 990
GGCCTTGCTT ACCTGCACTC CATTTTTAAA GTTCATAGAG ATATTAAGGG TGGCAACATT 19125
|||||||| | || ||||||| || | |||| || ||||||| | ||||| || ||| || ||
GGCCTTGCAT ACTTGCACTC AATATATAAA GTCCATAGAG ACATTAAAGG TGGAAATATC 1050
CTTCTAACTG AGCAAGGCGA GGTGAAGTTG GGTAAGCACA TTTGTTTTCT TCAAAAGTTT 19185
| |||||| | ||||| || ||| |||||| |
TTGTTAACTG AACAAGGAGA GGTCAAGTTG G......... .......... .......... 1081
TAGTTTGCAT TCTTAGCACC CATATTTCTG CATGTCCTGA CTCTGTGGTC GGCATGCTGT 19245
.......... .......... .......... .......... .......... .......... 1081
GGCGCCACAA CAATGTGCAA AACAGGTGAT TTTGGTGTAG CTGCCCAGCT GACAAGAACC 19305
|||| ||||| || | | || || || || | ||
.......... .......... .....GTGAC TTTGGGGTTG CAGCTCAACT TACTCGCACT 1116
ATGTCAAAGC GCAACACGGT ATTCTAAACA GTGTTTGTTT TGCCATTCAA ATCCATAGTT 19365
||||| |||| | ||||||
ATGTCGAAGC GAAACACG.. .......... .......... .......... .......... 1134
CAAGAAACTT CACATCGATG TAACAAACAA AATGAAGTGG CAGATGAAAC TTGTCCATGC 19425
.......... .......... .......... .......... .......... .......... 1134
CAGTTTACCA TAAGCGGACC CATTTGTGCT TGTGCATAGT TCTTCAATGT GATGGTACTT 19485
.......... .......... .......... .......... .......... .......... 1134
TTATGGGAAC TTGAAGCAAG TCTGTGTTGG AAAATGATTG CTGTGAAGTC CTAACTGTTT 19545
.......... .......... .......... .......... .......... .......... 1134
CTTTAAGTGT CATACTGCAA GTGCATTATG GTCTATTAGG TTTAAAATGA AAAATAAGAA 19605
.......... .......... .......... .......... .......... .......... 1134
AGTATATATT TGTTATCTAG TATGCCTCGC CTAATTCCTT GGCATTTCTT CCATTCTTTG 19665
.......... .......... .......... .......... .......... .......... 1134
AAACCCATAC TGGTGGAACC TAGTTGAAGT GGTTCCTGTA CAAATACTCT CTGCACTGCT 19725
.......... .......... .......... .......... .......... .......... 1134
TCTTCTCCCT TTCTTGTCGT GACAGCCTCT AGTCCCCATA TATCCCATTA TGAATCTGCT 19785
.......... .......... .......... .......... .......... .......... 1134
CACTCCCCCA TTTGGCTTCT TCCTAGGCCA CCACTCAACA ATTCTTCTGT TCTTGATGAC 19845
.......... .......... .......... .......... .......... .......... 1134
TGCGATGCTC CATTCGATCT GGCAAATTGC TGCCTTGCTG GAGCTATTCA AGAACGTAGA 19905
.......... .......... .......... .......... .......... .......... 1134
GGGTTACTGT GACATTAGCA TATCAAACCA ACAGGTCTGT TGGAAATCAT AATCACAATG 19965
.......... .......... .......... .......... .......... .......... 1134
AACCTCCAAG TGGGAAATAT TATCCAGGGC GTCATCTTAC CTCCAAGTTA TGGACTCTGC 20025
.......... .......... .......... .......... .......... .......... 1134
TTGACACTAG AGGAAGAGTT AGTGCACAGG GAGTCCAAAT CAGGTAGGAT AGTTGATAGT 20085
.......... .......... .......... .......... .......... .......... 1134
TCATAATTGG CTAGATCTAG GAGGAGGTAT GTGAGTGAGA GTTTGGAAAA TCAGGGTAGA 20145
.......... .......... .......... .......... .......... .......... 1134
ATACAAGTTC AGGTTCCCTA GGACGATGAT ATAATGTAGT ACCATACTAC AAGAATTGAC 20205
.......... .......... .......... .......... .......... .......... 1134
TATGGAATTT ATTAATATCT AGCTAGAAAC CAATATAAAA AAACAATCTA CTCCCCTTTC 20265
.......... .......... .......... .......... .......... .......... 1134
TACTGCTGCT GATACTTCTA CTCTTTTTTT TTTCTCTCTT GTACACCTTC TTGGCTGCTA 20325
.......... .......... .......... .......... .......... .......... 1134
CACTTCTCTA GTTTCCAATC ATGACAATAC ATAAATGCTT GAGGAGCCCA TAACAAATAG 20385
.......... .......... .......... .......... .......... .......... 1134
TTCTACCCCA CCCACCCACA CCCTTTCGTA GTAAAGTGTG CCGACAACAG TTGGTGCCCT 20445
.......... .......... .......... .......... .......... .......... 1134
CTTCTCGATG GTATCCATTG CTTTTCTGCA TGCACACACA AACAAACACT TCTAAATACA 20505
.......... .......... .......... .......... .......... .......... 1134
CATACTGACT TGTCGTATTG GCATGCAGTC ATGCATTGAG ACCAAATCCA TCAGGACTGC 20565
.......... .......... .......... .......... .......... .......... 1134
ATCCGCACAA CACAAAATCT CACCATACAT GCATACGGTG TCTTGGATGT TTCTGTTGTT 20625
.......... .......... .......... .......... .......... .......... 1134
GGGGCGCTAA TATGTACTTC TACCAAAATG CAAGGACAAA CTGTCCCAAT TTTACAGTAA 20685
.......... .......... .......... .......... .......... .......... 1134
AATAACTATC ATTGTGAAAC AGACTGTCAG CATCGCTCTC TAAGCTCAGT CTGTACAGCT 20745
.......... .......... .......... .......... .......... .......... 1134
TTTACCAAAT AAAAATAATG CAATGGTTTT TGGAAAGAAT AAAGGTTTTA GTGGCACACT 20805
.......... .......... .......... .......... .......... .......... 1134
AATTTCCATA ATTTGACCCT TCATGTTTAT GCTTTCAGTT CATTGGTACT CCACATTGGA 20865
|| |||||| ||| ||||||||||
.......... .......... .......... ........TT CATTGGGACT CCACATTGGA 1156
TGGCACCAGA GGTCATTCAA GAAAGTCGTT ATGATGGAAA GGTATCATGC TATCATCTCT 20925
|||| ||||| ||| ||||| |||| ||||| ||||||| || |
TGGCCCCAGA GGTTATTCAG GAAAATCGTT ATGATGGGAA G......... .......... 1197
ACGGTGTTCA GCTATGGAAT TGTTCATTTT AGCAGCTTTT GTGGATGTTG CCATTTTACT 20985
.......... .......... .......... .......... .......... .......... 1197
CTAAAGACTT GGTGGCCGTA AATTTATGAT TGGGTTTTCA GTGAACAGGA TTTCTTTAAT 21045
.......... .......... .......... .......... .......... .......... 1197
ATTTTGTTTC TTTGGGTGTG GAATGTCCTT GCATATGGCA GAACAAGGTT ACACGTAAAT 21105
.......... .......... .......... .......... .......... .......... 1197
TCATAAAAGC CATTAAATAA TTGTTATGGA ACCCCTGCCA GTGCCAAAAC ATGTTTATTT 21165
.......... .......... .......... .......... .......... .......... 1197
CTTTTCCTTG TCTCTTGATG GTTCCTCAAG CAAAAAAAAA ATAAAATAAA ATCATTACCT 21225
.......... .......... .......... .......... .......... .......... 1197
ACTACTAAGC CTCCAAAACA AGTCTACTGG TTGCAATTAG GGATGAAAAC GGATCGGATA 21285
.......... .......... .......... .......... .......... .......... 1197
CGGACGGATA TCATCGATAT CATATTTGTT TTCGTATTTC TGGTCGAATT CGGATTCGAA 21345
.......... .......... .......... .......... .......... .......... 1197
TACGGATAAT GTCAACTATA TCGGATAAGA TACGATTGGA TGTCGACATC ATAAATATAT 21405
.......... .......... .......... .......... .......... .......... 1197
GATTTAAGTA CTCGGATACG GATACGGTAT CGGATGTAGA ACATTCGAAC TCGGATACGA 21465
.......... .......... .......... .......... .......... .......... 1197
ACTGGTCTGA ATCCCTCTAA ACGAATTCGG TCTCAAATAC GGTCGGAAAA TATCCGTACC 21525
.......... .......... .......... .......... .......... .......... 1197
GTTTTCATCC CTAGTTGCAA TGTTGAGAAA ATTATTTTGG CAGCTGGAAT TCTTCCTTTA 21585
.......... .......... .......... .......... .......... .......... 1197
GTTTGTCTTA CCAAAACATT TGTTCTTGTT TCCTGCACCA GGTAGATGTT TGGGCATTAG 21645
|| ||||| ||||| | |
.......... .......... .......... .......... .GTTGATGTA TGGGCTCTTG 1216
GTGTATCTGC AATTGAGATG GCAGAGGTAG ACATTGTTCC TTGCTTCTTT CTTTTTTTGA 21705
|||| || || ||||||||| ||||||
GTGTTTCAGC TATTGAGATG GCAGAG.... .......... .......... .......... 1242
CTGTACACTT TTGTTTTTAA TTTTGTGTCG TGACAATGCT TTTTAATATT TATTTTGTAT 21765
.......... .......... .......... .......... .......... .......... 1242
CTCTGACTGT AGGGCATGCC ACCAAGATCC ACTGTACATC CAATGAGAGT AAGAGATGCT 21825
|| | || |||||||| | || |||| | |||||
.......... ..GGGCTCCC TCCAAGATCA TCAGTTCATC CGATGAGG.. .......... 1278
TCTCAATGCC TGTTAGTATC TGCAGTTAAT GAGGCTAATA GGTTATAACA GAATTAAAAA 21885
.......... .......... .......... .......... .......... .......... 1278
AATCTGCTCT ATCTTTGGTG CACTGTACTT TTTATCTCTT TACTGTCAAG GGCGTCGAGG 21945
.......... .......... .......... .......... .......... .......... 1278
GACAGGGTAG GAGGATCCCG GCTACGTAGT TCATAGACCA ATCTGTGGTG TGGGGCGGAG 22005
.......... .......... .......... .......... .......... .......... 1278
GTTTTACCCC TCAGTGCCCG ATTGTTTCAG CAAAGGTAGA TTAGGGAATT GGGATAATTG 22065
.......... .......... .......... .......... .......... .......... 1278
TTCTTTCTTG ATTATCATCA TACGAGTACA AGAATATATA GGCCATTCGG CCATAACAGC 22125
.......... .......... .......... .......... .......... .......... 1278
TTGGAGCCAA TTGCTCCTAA ATCTAAGGCC ATTATCGGCT CTCCTGCCTT CTAGGCTCTC 22185
.......... .......... .......... .......... .......... .......... 1278
GCCTGTTCAG TGTGCTCTGC ATGCGTGGTG ACCGCGCCTA CGGTTCTGCT GGTGCGCCAT 22245
.......... .......... .......... .......... .......... .......... 1278
CTGCGGCTCT GCGAGCATCC TGGGCGTGCC GTTTCCTTGT GTAGGCGCGG TCCCACATGA 22305
.......... .......... .......... .......... .......... .......... 1278
CATTTACTTT CTTTCTGATG CATTTGCTTC TTTACTTTGC CTTGGTAAAT ATTTGGTATA 22365
.......... .......... .......... .......... .......... .......... 1278
CATATCAATA TATTGTTTCA TCTTCGTTTA GCATGAATGC TTGATAGACC GACTAACGAT 22425
.......... .......... .......... .......... .......... .......... 1278
CTCTCTTCCC CCTTCCCTTA TCTCAGGTTA TCTTCATGAT ATCCAGTGAA CCAGCACCAA 22485
||| | |||||||| ||||| || ||||| ||||
.......... .......... ......GTTT TGTTCATGAT ATCCATCGAG CCAGCTCCAA 1312
TGCTGGAGGA TAAGG 22500
|||| ||||| ||| |
TGCTCGAGGA TAAAG 1327
********************************************************************************
EST sequence 80 +strand (File: 18176307+)
1 GCCTGACTCT CTTTCTCTCT CTCCCGGCGA CGACGGTTTA GAGTCGCCAT AGATGGATCA
61 TAACTCGCCG AAATCTCGTC GGAGCCGGAA ACCGGAGCCC AAACCTGACA TATACTCCAC
121 TTTCGTAGTC CACTCCGACT CTGATTCTGA TCAAGGTCGA GATCGAGACA AACGTAAAGC
181 CAAACCTGAG GAAGACGAAA ATGTCGATTT ATACGCTACA ATGGTCTACA AAGGCGATAG
241 TGACGGAGAA GGAGAGGAAG ATGATGATGA CGATTCTATG CTTCCTCCTC TTCTCAAGCG
301 TCTTCCCAAG GATTTCGGAG GCGGCGCGTC GCTCGATTAC GACGACGACG ACGGTGATGA
361 ATCTGGAGAT TTCGGTACGA TGATTGTGAA AACAGATCGG AGTAGTCATA GTAAGAAGAA
421 CAGTCCGTAC TCGTCCAAAC CGCGAATGGG AGTTAGTCCT AGGAGGAGAG CGAGAGGCGG
481 AGATGAGGAA TCTTCTGATG AAGAAGACGA AGAAGAAGAT GATGATGACG ACGACGGAGA
541 CTACGGTACG TTTGTTGTGA AATCTAAGGA TAAAAAGGGA AAGAAGAAAG ACAAGGAGAT
601 TGATATGACA ACTATGGGAA GAGCTGTTGC GAGTATGCAG AAATCAAATT TTGGTGGTAA
661 GACTCGGAAA TTGGATCCTT CCTCTTCTTC TTCGAAACTT CACGGTGAAG ATAATCGGAA
721 AATGCAGCAG CAAAACAGGA AAGGATCATA TGGATCTGTA TACAAGGCAA GAGATTTGAA
781 AACATCAGAG ATTGTTGCTG TGAAAGTCAT ATCACTTACT GAAGGGGAGG AGGGGTATGA
841 AGAGATCCGG GGAGAAATTG AGATGCTGCA GCAATGTAAT CATCCTAATG TTGTCCGCTA
901 CCTAGGGAGT TACCAAGGAG AAGATTATCT TTGGATAGTG ATGGAGTATT GTGGAGGTGG
961 AAGTGTTGCT GATCTTATGA ATGTTACTGA GGAGGCGTTA GAGGAGTATC AGATAGCATA
1021 TATATGTCGG GAGGCGTTGA AGGGCCTTGC ATACTTGCAC TCAATATATA AAGTCCATAG
1081 AGACATTAAA GGTGGAAATA TCTTGTTAAC TGAACAAGGA GAGGTCAAGT TGGGTGACTT
1141 TGGGGTTGCA GCTCAACTTA CTCGCACTAT GTCGAAGCGA AACACGTTCA TTGGGACTCC
1201 ACATTGGATG GCCCCAGAGG TTATTCAGGA AAATCGTTAT GATGGGAAGG TTGATGTATG
1261 GGCTCTTGGT GTTTCAGCTA TTGAGATGGC AGAGGGGCTC CCTCCAAGAT CATCAGTTCA
1321 TCCGATGAGG GTTTTGTTCA TGATATCCAT CGAGCCAGCT CCAATGCTCG AGGATAAAGA
1381 AAAATGGTCC CTGGTCTTTC ATGATTTTGT TGCAAAGTGC CTCACAAAGG AACCACGTCT
1441 TCGCCCAACT GCAGCTGAGA TGCTTAAGCA CAAATTTGTT GAGAGATGTA AAACTGGGGC
1501 TTCTGCAATG TCGCCAAAGA TTGAGAAGTC CAGACAAATC AGAGCTACAA TGGCTCTGCA
1561 AGCGCAAAGT GTTGTCGCAC CTTCTTTGGA GGACACTTCA ACACTGGGTC CAAAATCAAG
1621 CGAGGAGCTT GGAATTACTG TTCCATCTAA ACCTCCTCAA AATTCGACCG AAGCACCTCT
1681 AACCAGCACC CTGAATCGGC AGCATATTAC TGGCAACACT GTGTTGGCTG GAGAAGGTGG
1741 TGACTTCGGA ACTATGATCG TTCATGGTGA GGATGAGACA GAGGAGAGTG ACTCCAGGTC
1801 TCAGCTTGTC AGAGAAAAAG AATCTTCATC TTCTCAGTTT GAAGGTGTTC CTCGCGAATT
1861 CCCAGGAGAA GAATTACCTG ACTCATGGAT ACATGACAAA AAGAAGCCTC CGGCTATTGA
1921 TCTTCCAGTT GAAGCTTCGA TTTCACAGAG CATGCAGGCA AGTTCATCTC ATGAGCATAG
1981 AACCAAGCTA CATAACATAG CTGGAACACA GATGGAAGGT GGCAGTGATG CAAGTGGTAG
2041 TACCTTGAAA AATGAAACTG TTGGCAGGAA AGCTTTTGCT TTGCAAGATA AGTTATGGTC
2101 AATCTACGCA GCTGGAAACA CAGTACCGAT ACCGTTCTTG AGAGCAACAG ATATATCCCC
2161 AATCGCACTC TTGTCAGAGA ACATGATCGG AGGCATGCAA CAAGATGGGA ATGGAACTGT
2221 AGCCGTCGAA GCACTTCAGG AGCTCTTCAC TTCTTCTGAT CCCCAATCCA AAAAGGGCCG
2281 ACGTGGACAA AACGAGATGC CTCTTCCTCC AAGCGTATAC CAAAGACTGA CAACAAGCTC
2341 TTCTCTGATG AACCTTGCAC AAGTTTTAGC CTACCACAGA GCGTGTTACG AGGAAATGCC
2401 GCTGCAGGAA TTGCAAGCAA CGCAGGAGCA GCAAACCATT CAGAATCTGT GCGATACTCT
2461 TCGCACTATT CTCCGCCTCT AAATAGTCTT GTGTTCATAT CTGTTGCTAC TCTTGTATTA
2521 GTATAGGTCG TCTCAGCAAG TACATGTTTA TTTTCCTAGA AGTTTTTATT AAAAACCAAT
2581 CAATTTTGTC TCAAAAAAAA AAAAAAAA
Predicted gene structure (within gDNA segment 14898 to 22500):
Exon 1 18329 18417 ( 89 n); cDNA 738 826 ( 89 n); score: 0.742
Intron 1 18418 18626 ( 209 n); Pd: 0.993 (s: 0.70), Pa: 0.998 (s: 0.88)
Exon 2 18627 18734 ( 108 n); cDNA 827 934 ( 108 n); score: 0.843
Intron 2 18735 18859 ( 125 n); Pd: 0.980 (s: 0.82), Pa: 0.787 (s: 0.80)
Exon 3 18860 18967 ( 108 n); cDNA 935 1042 ( 108 n); score: 0.741
Intron 3 18968 19065 ( 98 n); Pd: 0.000 (s: 0.68), Pa: 0.953 (s: 0.84)
Exon 4 19066 19156 ( 91 n); cDNA 1043 1133 ( 91 n); score: 0.813
Intron 4 19157 19270 ( 114 n); Pd: 0.984 (s: 0.78), Pa: 0.000 (s: 0.74)
Exon 5 19271 19323 ( 53 n); cDNA 1134 1186 ( 53 n); score: 0.755
Intron 5 19324 20843 (1520 n); Pd: 0.770 (s: 0.74), Pa: 0.962 (s: 0.90)
Exon 6 20844 20906 ( 63 n); cDNA 1187 1249 ( 63 n); score: 0.905
Intron 6 20907 21626 ( 720 n); Pd: 0.929 (s: 0.90), Pa: 0.999 (s: 0.82)
Exon 7 21627 21671 ( 45 n); cDNA 1250 1294 ( 45 n); score: 0.822
Intron 7 21672 21777 ( 106 n); Pd: 0.992 (s: 0.82), Pa: 0.998 (s: 0)
Exon 8 21778 21813 ( 36 n); cDNA 1295 1330 ( 36 n); score: 0.722
Intron 8 21814 22451 ( 638 n); Pd: 0.596 (s: 0), Pa: 0.894 (s: 0.84)
Exon 9 22452 22500 ( 49 n); cDNA 1331 1379 ( 49 n); score: 0.837
PPA cDNA 2593 2608
MATCH 21326110+ 18176307+ 0.797 642 0.246 C
PGS_21326110+_18176307+ (18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500)
Alignment (genomic DNA sequence = upper lines):
GGAAAGGCTC ATATGGTGCA GTGTACAAAG CAAGGGATCT CAGAACGCAG GAGCTTGTGG 18388
||||||| || |||||| | || ||||| | |||| ||| | | ||| ||| |||| |
GGAAAGGATC ATATGGATCT GTATACAAGG CAAGAGATTT GAAAACATCA GAGATTGTTG 797
CTGTCAAGAT TATCTCACTA ACAGAAGGGG TTAGTTTCTA ATTTTCTATT ACAAAGTTCT 18448
|||| || | || ||||| || ||||||
CTGTGAAAGT CATATCACTT ACTGAAGGG. .......... .......... .......... 826
GTGAATATTC TGAAAGGCCA CCCGAGACAT ATTTCATATT TGGCAACCAT ATTGCTTTTG 18508
.......... .......... .......... .......... .......... .......... 826
TTGTGAGCAT TTTGTTTGCA TGGGCTCAAT TGTGAGAGAA TCTCATAAAT GTGGTTGCTG 18568
.......... .......... .......... .......... .......... .......... 826
TCTGTTTTCC GAGTCGTTGC ATTTTTCCAA AATATAAGTA TGTATCTTTG GTTTTCAGGA 18628
||
.......... .......... .......... .......... .......... ........GA 828
AGAAGGATAT GAAGACATAC GGGGAGAAAT TGAGATGCTG CAGCAGTGTA GCCATCCAAA 18688
|| || ||| ||||| || | |||||||||| |||||||||| ||||| |||| ||||| ||
GGAGGGGTAT GAAGAGATCC GGGGAGAAAT TGAGATGCTG CAGCAATGTA ATCATCCTAA 888
TGTTGTCCGC TACTTTGGAA GCTACCAAGG AGAGGACTAC CTATGGGTAC AATCAAATAG 18748
|||||||||| ||| | || | | |||||||| ||| || || || |||
TGTTGTCCGC TACCTAGGGA GTTACCAAGG AGAAGATTAT CTTTGG.... .......... 934
CCTGATAGTA TCCATTTTAT TAACATTAAG AAATAACTAT CATTGGGAGA TTTCTCTACT 18808
.......... .......... .......... .......... .......... .......... 934
TCTTGAGTCA TTTAACATGG GCTTGATGCA AATGCGATTC TCAACTTACA GATAGTTATG 18868
||||| |||
.......... .......... .......... .......... .......... .ATAGTGATG 943
GAGTACTGTG GTGGTGGAAG TGTTGCTGAT TTGATAGGCA TCACAGAGGA GCCTCTTGAT 18928
||||| |||| | |||||||| |||||||||| | || | || ||||| | | | ||
GAGTATTGTG GAGGTGGAAG TGTTGCTGAT CTTATGAATG TTACTGAGGA GGCGTTAGAG 1003
GAATCCCAAA TAGCTTATAT ATGTAGAGAA GCACTAAAGG TTCTAACATA GTTGCATCAG 18988
|| | || | |||| ||||| |||| | || || | |||
GAGTATCAGA TAGCATATAT ATGTCGGGAG GCGTTGAAG. .......... .......... 1042
ATTTGAAGTA TTTGCTGCCT TGTTGGGCAA CTAAATGTAT TTGGATATTG AACTTTTGCG 19048
.......... .......... .......... .......... .......... .......... 1042
TGCTTATTTT CTTCCAGGGC CTTGCTTACC TGCACTCCAT TTTTAAAGTT CATAGAGATA 19108
||| ||||| ||| ||||||| || | |||||| |||||||| |
.......... .......GGC CTTGCATACT TGCACTCAAT ATATAAAGTC CATAGAGACA 1085
TTAAGGGTGG CAACATTCTT CTAACTGAGC AAGGCGAGGT GAAGTTGGGT AAGCACATTT 19168
|||| ||||| || || | ||||||| | |||| ||||| |||||||
TTAAAGGTGG AAATATCTTG TTAACTGAAC AAGGAGAGGT CAAGTTGG.. .......... 1133
GTTTTCTTCA AAAGTTTTAG TTTGCATTCT TAGCACCCAT ATTTCTGCAT GTCCTGACTC 19228
.......... .......... .......... .......... .......... .......... 1133
TGTGGTCGGC ATGCTGTGGC GCCACAACAA TGTGCAAAAC AGGTGATTTT GGTGTAGCTG 19288
|||| ||| || || || |
.......... .......... .......... .......... ..GTGACTTT GGGGTTGCAG 1151
CCCAGCTGAC AAGAACCATG TCAAAGCGCA ACACGGTATT CTAAACAGTG TTTGTTTTGC 19348
| || || || | || ||| || ||||| | |||||
CTCAACTTAC TCGCACTATG TCGAAGCGAA ACACG..... .......... .......... 1186
CATTCAAATC CATAGTTCAA GAAACTTCAC ATCGATGTAA CAAACAAAAT GAAGTGGCAG 19408
.......... .......... .......... .......... .......... .......... 1186
ATGAAACTTG TCCATGCCAG TTTACCATAA GCGGACCCAT TTGTGCTTGT GCATAGTTCT 19468
.......... .......... .......... .......... .......... .......... 1186
TCAATGTGAT GGTACTTTTA TGGGAACTTG AAGCAAGTCT GTGTTGGAAA ATGATTGCTG 19528
.......... .......... .......... .......... .......... .......... 1186
TGAAGTCCTA ACTGTTTCTT TAAGTGTCAT ACTGCAAGTG CATTATGGTC TATTAGGTTT 19588
.......... .......... .......... .......... .......... .......... 1186
AAAATGAAAA ATAAGAAAGT ATATATTTGT TATCTAGTAT GCCTCGCCTA ATTCCTTGGC 19648
.......... .......... .......... .......... .......... .......... 1186
ATTTCTTCCA TTCTTTGAAA CCCATACTGG TGGAACCTAG TTGAAGTGGT TCCTGTACAA 19708
.......... .......... .......... .......... .......... .......... 1186
ATACTCTCTG CACTGCTTCT TCTCCCTTTC TTGTCGTGAC AGCCTCTAGT CCCCATATAT 19768
.......... .......... .......... .......... .......... .......... 1186
CCCATTATGA ATCTGCTCAC TCCCCCATTT GGCTTCTTCC TAGGCCACCA CTCAACAATT 19828
.......... .......... .......... .......... .......... .......... 1186
CTTCTGTTCT TGATGACTGC GATGCTCCAT TCGATCTGGC AAATTGCTGC CTTGCTGGAG 19888
.......... .......... .......... .......... .......... .......... 1186
CTATTCAAGA ACGTAGAGGG TTACTGTGAC ATTAGCATAT CAAACCAACA GGTCTGTTGG 19948
.......... .......... .......... .......... .......... .......... 1186
AAATCATAAT CACAATGAAC CTCCAAGTGG GAAATATTAT CCAGGGCGTC ATCTTACCTC 20008
.......... .......... .......... .......... .......... .......... 1186
CAAGTTATGG ACTCTGCTTG ACACTAGAGG AAGAGTTAGT GCACAGGGAG TCCAAATCAG 20068
.......... .......... .......... .......... .......... .......... 1186
GTAGGATAGT TGATAGTTCA TAATTGGCTA GATCTAGGAG GAGGTATGTG AGTGAGAGTT 20128
.......... .......... .......... .......... .......... .......... 1186
TGGAAAATCA GGGTAGAATA CAAGTTCAGG TTCCCTAGGA CGATGATATA ATGTAGTACC 20188
.......... .......... .......... .......... .......... .......... 1186
ATACTACAAG AATTGACTAT GGAATTTATT AATATCTAGC TAGAAACCAA TATAAAAAAA 20248
.......... .......... .......... .......... .......... .......... 1186
CAATCTACTC CCCTTTCTAC TGCTGCTGAT ACTTCTACTC TTTTTTTTTT CTCTCTTGTA 20308
.......... .......... .......... .......... .......... .......... 1186
CACCTTCTTG GCTGCTACAC TTCTCTAGTT TCCAATCATG ACAATACATA AATGCTTGAG 20368
.......... .......... .......... .......... .......... .......... 1186
GAGCCCATAA CAAATAGTTC TACCCCACCC ACCCACACCC TTTCGTAGTA AAGTGTGCCG 20428
.......... .......... .......... .......... .......... .......... 1186
ACAACAGTTG GTGCCCTCTT CTCGATGGTA TCCATTGCTT TTCTGCATGC ACACACAAAC 20488
.......... .......... .......... .......... .......... .......... 1186
AAACACTTCT AAATACACAT ACTGACTTGT CGTATTGGCA TGCAGTCATG CATTGAGACC 20548
.......... .......... .......... .......... .......... .......... 1186
AAATCCATCA GGACTGCATC CGCACAACAC AAAATCTCAC CATACATGCA TACGGTGTCT 20608
.......... .......... .......... .......... .......... .......... 1186
TGGATGTTTC TGTTGTTGGG GCGCTAATAT GTACTTCTAC CAAAATGCAA GGACAAACTG 20668
.......... .......... .......... .......... .......... .......... 1186
TCCCAATTTT ACAGTAAAAT AACTATCATT GTGAAACAGA CTGTCAGCAT CGCTCTCTAA 20728
.......... .......... .......... .......... .......... .......... 1186
GCTCAGTCTG TACAGCTTTT ACCAAATAAA AATAATGCAA TGGTTTTTGG AAAGAATAAA 20788
.......... .......... .......... .......... .......... .......... 1186
GGTTTTAGTG GCACACTAAT TTCCATAATT TGACCCTTCA TGTTTATGCT TTCAGTTCAT 20848
|||||
.......... .......... .......... .......... .......... .....TTCAT 1191
TGGTACTCCA CATTGGATGG CACCAGAGGT CATTCAAGAA AGTCGTTATG ATGGAAAGGT 20908
||| |||||| |||||||||| | |||||||| ||||| ||| | |||||||| |||| |||
TGGGACTCCA CATTGGATGG CCCCAGAGGT TATTCAGGAA AATCGTTATG ATGGGAAG.. 1249
ATCATGCTAT CATCTCTACG GTGTTCAGCT ATGGAATTGT TCATTTTAGC AGCTTTTGTG 20968
.......... .......... .......... .......... .......... .......... 1249
GATGTTGCCA TTTTACTCTA AAGACTTGGT GGCCGTAAAT TTATGATTGG GTTTTCAGTG 21028
.......... .......... .......... .......... .......... .......... 1249
AACAGGATTT CTTTAATATT TTGTTTCTTT GGGTGTGGAA TGTCCTTGCA TATGGCAGAA 21088
.......... .......... .......... .......... .......... .......... 1249
CAAGGTTACA CGTAAATTCA TAAAAGCCAT TAAATAATTG TTATGGAACC CCTGCCAGTG 21148
.......... .......... .......... .......... .......... .......... 1249
CCAAAACATG TTTATTTCTT TTCCTTGTCT CTTGATGGTT CCTCAAGCAA AAAAAAAATA 21208
.......... .......... .......... .......... .......... .......... 1249
AAATAAAATC ATTACCTACT ACTAAGCCTC CAAAACAAGT CTACTGGTTG CAATTAGGGA 21268
.......... .......... .......... .......... .......... .......... 1249
TGAAAACGGA TCGGATACGG ACGGATATCA TCGATATCAT ATTTGTTTTC GTATTTCTGG 21328
.......... .......... .......... .......... .......... .......... 1249
TCGAATTCGG ATTCGAATAC GGATAATGTC AACTATATCG GATAAGATAC GATTGGATGT 21388
.......... .......... .......... .......... .......... .......... 1249
CGACATCATA AATATATGAT TTAAGTACTC GGATACGGAT ACGGTATCGG ATGTAGAACA 21448
.......... .......... .......... .......... .......... .......... 1249
TTCGAACTCG GATACGAACT GGTCTGAATC CCTCTAAACG AATTCGGTCT CAAATACGGT 21508
.......... .......... .......... .......... .......... .......... 1249
CGGAAAATAT CCGTACCGTT TTCATCCCTA GTTGCAATGT TGAGAAAATT ATTTTGGCAG 21568
.......... .......... .......... .......... .......... .......... 1249
CTGGAATTCT TCCTTTAGTT TGTCTTACCA AAACATTTGT TCTTGTTTCC TGCACCAGGT 21628
||
.......... .......... .......... .......... .......... ........GT 1251
AGATGTTTGG GCATTAGGTG TATCTGCAAT TGAGATGGCA GAGGTAGACA TTGTTCCTTG 21688
||||| ||| || | |||| | || || || |||||||||| |||
TGATGTATGG GCTCTTGGTG TTTCAGCTAT TGAGATGGCA GAG....... .......... 1294
CTTCTTTCTT TTTTTGACTG TACACTTTTG TTTTTAATTT TGTGTCGTGA CAATGCTTTT 21748
.......... .......... .......... .......... .......... .......... 1294
TAATATTTAT TTTGTATCTC TGACTGTAGG GCATGCCACC AAGATCCACT GTACATCCAA 21808
| | | || || |||||| | || ||||| |
.......... .......... .........G GGCTCCCTCC AAGATCATCA GTTCATCCGA 1325
TGAGAGTAAG AGATGCTTCT CAATGCCTGT TAGTATCTGC AGTTAATGAG GCTAATAGGT 21868
||||
TGAGG..... .......... .......... .......... .......... .......... 1330
TATAACAGAA TTAAAAAAAT CTGCTCTATC TTTGGTGCAC TGTACTTTTT ATCTCTTTAC 21928
.......... .......... .......... .......... .......... .......... 1330
TGTCAAGGGC GTCGAGGGAC AGGGTAGGAG GATCCCGGCT ACGTAGTTCA TAGACCAATC 21988
.......... .......... .......... .......... .......... .......... 1330
TGTGGTGTGG GGCGGAGGTT TTACCCCTCA GTGCCCGATT GTTTCAGCAA AGGTAGATTA 22048
.......... .......... .......... .......... .......... .......... 1330
GGGAATTGGG ATAATTGTTC TTTCTTGATT ATCATCATAC GAGTACAAGA ATATATAGGC 22108
.......... .......... .......... .......... .......... .......... 1330
CATTCGGCCA TAACAGCTTG GAGCCAATTG CTCCTAAATC TAAGGCCATT ATCGGCTCTC 22168
.......... .......... .......... .......... .......... .......... 1330
CTGCCTTCTA GGCTCTCGCC TGTTCAGTGT GCTCTGCATG CGTGGTGACC GCGCCTACGG 22228
.......... .......... .......... .......... .......... .......... 1330
TTCTGCTGGT GCGCCATCTG CGGCTCTGCG AGCATCCTGG GCGTGCCGTT TCCTTGTGTA 22288
.......... .......... .......... .......... .......... .......... 1330
GGCGCGGTCC CACATGACAT TTACTTTCTT TCTGATGCAT TTGCTTCTTT ACTTTGCCTT 22348
.......... .......... .......... .......... .......... .......... 1330
GGTAAATATT TGGTATACAT ATCAATATAT TGTTTCATCT TCGTTTAGCA TGAATGCTTG 22408
.......... .......... .......... .......... .......... .......... 1330
ATAGACCGAC TAACGATCTC TCTTCCCCCT TCCCTTATCT CAGGTTATCT TCATGATATC 22468
||| | | ||||||||||
.......... .......... .......... .......... ...GTTTTGT TCATGATATC 1347
CAGTGAACCA GCACCAATGC TGGAGGATAA GG 22500
|| || ||| || ||||||| | |||||||| |
CATCGAGCCA GCTCCAATGC TCGAGGATAA AG 1379
********************************************************************************
EST sequence 93 +strand (File: 13615373+)
1 GAGATGTTGC AGCAGTGCAG TCATCCAAAT GTTGTTCGCT ATCTTGGGAG CTACCAAGGC
61 GAAGAGTACC TTTGGATAGT AATGGAGTAT TGTGGGGGTG GAAGTGTTGC TGACTTAATG
121 AATGTCACAG ATGAGGCTTT AGAGGAGTAT CAAATAGCAT TTATTTGTCG AGAGGCATTG
181 AAGGGCCTCT CCTATCTGCA CTCTATTTTT AAAGTACACA GAGATATTAA AGGTGGCAAT
241 ATCTTACTGA CTGATCAAGG AGAGGTTAAG TTAGGTGATT TTGGTGTTGC TGCGCAGCTG
301 ACTAGAACCA TGTCCAAACG TAACACGTTT ATCGGCACTC CCCATTGGAT GGCACCAGAA
361 GTTATTCAAG AAAGTCGTTA TGATGGGAAG GTAGATGTAT GGGCTCTCGG AGTGTCTGCT
421 ATTGAAATGG CGGAGGGTCT TCCTCCTAGG GCAACAGTGC ATCCAATGAG GGTGCTATTT
481 ATGATATCCA TTGAACCAGC TCCAATGCTT GAGGATAAAG AGAAATGGTC TCTTGTATTC
541 CATGATTTTG TTGCCAAGTG CCTTACAAAA GACACCCGAC TTCGTCCAAC TGCCTTCGAG
601 ATGCTAAAGC ACAAATTCAT CGAAAAATTC AAGCAGGAGC TTTCTGTATG ATGCCGAAGA
661 TT
Predicted gene structure (within gDNA segment 18276 to 22500):
Exon 1 18660 18734 ( 75 n); cDNA 1 75 ( 75 n); score: 0.853
Intron 1 18735 18859 ( 125 n); Pd: 0.980 (s: 0.84), Pa: 0.787 (s: 0.80)
Exon 2 18860 18967 ( 108 n); cDNA 76 183 ( 108 n); score: 0.769
Intron 2 18968 19065 ( 98 n); Pd: 0.000 (s: 0.72), Pa: 0.953 (s: 0.84)
Exon 3 19066 19156 ( 91 n); cDNA 184 274 ( 91 n); score: 0.813
Intron 3 19157 19270 ( 114 n); Pd: 0.984 (s: 0.80), Pa: 0.000 (s: 0.88)
Exon 4 19271 19323 ( 53 n); cDNA 275 327 ( 53 n); score: 0.887
Intron 4 19324 20843 (1520 n); Pd: 0.770 (s: 0.88), Pa: 0.962 (s: 0.88)
Exon 5 20844 20906 ( 63 n); cDNA 328 390 ( 63 n); score: 0.889
Intron 5 20907 21626 ( 720 n); Pd: 0.929 (s: 0.92), Pa: 0.999 (s: 0.80)
Exon 6 21627 21671 ( 45 n); cDNA 391 435 ( 45 n); score: 0.800
Intron 6 21672 21777 ( 106 n); Pd: 0.992 (s: 0.80), Pa: 0.998 (s: 0)
Exon 7 21778 21813 ( 36 n); cDNA 436 471 ( 36 n); score: 0.694
Intron 7 21814 22451 ( 638 n); Pd: 0.596 (s: 0), Pa: 0.894 (s: 0.84)
Exon 8 22452 22500 ( 49 n); cDNA 472 520 ( 49 n); score: 0.837
MATCH 21326110+ 13615373+ 0.831 520 0.785 C
PGS_21326110+_13615373+ (18660 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500)
Alignment (genomic DNA sequence = upper lines):
GAGATGCTGC AGCAGTGTAG CCATCCAAAT GTTGTCCGCT ACTTTGGAAG CTACCAAGGA 18719
|||||| ||| ||||||| || ||||||||| ||||| |||| | |||| || |||||||||
GAGATGTTGC AGCAGTGCAG TCATCCAAAT GTTGTTCGCT ATCTTGGGAG CTACCAAGGC 60
GAGGACTACC TATGGGTACA ATCAAATAGC CTGATAGTAT CCATTTTATT AACATTAAGA 18779
|| || |||| | |||
GAAGAGTACC TTTGG..... .......... .......... .......... .......... 75
AATAACTATC ATTGGGAGAT TTCTCTACTT CTTGAGTCAT TTAACATGGG CTTGATGCAA 18839
.......... .......... .......... .......... .......... .......... 75
ATGCGATTCT CAACTTACAG ATAGTTATGG AGTACTGTGG TGGTGGAAGT GTTGCTGATT 18899
||||| |||| |||| ||||| ||||||||| |||||||| |
.......... .......... ATAGTAATGG AGTATTGTGG GGGTGGAAGT GTTGCTGACT 115
TGATAGGCAT CACAGAGGAG CCTCTTGATG AATCCCAAAT AGCTTATATA TGTAGAGAAG 18959
| || | |||||| ||| || | || | | | ||||| ||| | ||| ||| |||| |
TAATGAATGT CACAGATGAG GCTTTAGAGG AGTATCAAAT AGCATTTATT TGTCGAGAGG 175
CACTAAAGGT TCTAACATAG TTGCATCAGA TTTGAAGTAT TTGCTGCCTT GTTGGGCAAC 19019
|| | |||
CATTGAAG.. .......... .......... .......... .......... .......... 183
TAAATGTATT TGGATATTGA ACTTTTGCGT GCTTATTTTC TTCCAGGGCC TTGCTTACCT 19079
|||| | | || ||
.......... .......... .......... .......... ......GGCC TCTCCTATCT 197
GCACTCCATT TTTAAAGTTC ATAGAGATAT TAAGGGTGGC AACATTCTTC TAACTGAGCA 19139
|||||| ||| |||||||| | | |||||||| ||| |||||| || || | | | ||||| ||
GCACTCTATT TTTAAAGTAC ACAGAGATAT TAAAGGTGGC AATATCTTAC TGACTGATCA 257
AGGCGAGGTG AAGTTGGGTA AGCACATTTG TTTTCTTCAA AAGTTTTAGT TTGCATTCTT 19199
||| ||||| ||||| |
AGGAGAGGTT AAGTTAG... .......... .......... .......... .......... 274
AGCACCCATA TTTCTGCATG TCCTGACTCT GTGGTCGGCA TGCTGTGGCG CCACAACAAT 19259
.......... .......... .......... .......... .......... .......... 274
GTGCAAAACA GGTGATTTTG GTGTAGCTGC CCAGCTGACA AGAACCATGT CAAAGCGCAA 19319
||||||||| |||| ||||| |||||||| |||||||||| | || || ||
.......... .GTGATTTTG GTGTTGCTGC GCAGCTGACT AGAACCATGT CCAAACGTAA 323
CACGGTATTC TAAACAGTGT TTGTTTTGCC ATTCAAATCC ATAGTTCAAG AAACTTCACA 19379
||||
CACG...... .......... .......... .......... .......... .......... 327
TCGATGTAAC AAACAAAATG AAGTGGCAGA TGAAACTTGT CCATGCCAGT TTACCATAAG 19439
.......... .......... .......... .......... .......... .......... 327
CGGACCCATT TGTGCTTGTG CATAGTTCTT CAATGTGATG GTACTTTTAT GGGAACTTGA 19499
.......... .......... .......... .......... .......... .......... 327
AGCAAGTCTG TGTTGGAAAA TGATTGCTGT GAAGTCCTAA CTGTTTCTTT AAGTGTCATA 19559
.......... .......... .......... .......... .......... .......... 327
CTGCAAGTGC ATTATGGTCT ATTAGGTTTA AAATGAAAAA TAAGAAAGTA TATATTTGTT 19619
.......... .......... .......... .......... .......... .......... 327
ATCTAGTATG CCTCGCCTAA TTCCTTGGCA TTTCTTCCAT TCTTTGAAAC CCATACTGGT 19679
.......... .......... .......... .......... .......... .......... 327
GGAACCTAGT TGAAGTGGTT CCTGTACAAA TACTCTCTGC ACTGCTTCTT CTCCCTTTCT 19739
.......... .......... .......... .......... .......... .......... 327
TGTCGTGACA GCCTCTAGTC CCCATATATC CCATTATGAA TCTGCTCACT CCCCCATTTG 19799
.......... .......... .......... .......... .......... .......... 327
GCTTCTTCCT AGGCCACCAC TCAACAATTC TTCTGTTCTT GATGACTGCG ATGCTCCATT 19859
.......... .......... .......... .......... .......... .......... 327
CGATCTGGCA AATTGCTGCC TTGCTGGAGC TATTCAAGAA CGTAGAGGGT TACTGTGACA 19919
.......... .......... .......... .......... .......... .......... 327
TTAGCATATC AAACCAACAG GTCTGTTGGA AATCATAATC ACAATGAACC TCCAAGTGGG 19979
.......... .......... .......... .......... .......... .......... 327
AAATATTATC CAGGGCGTCA TCTTACCTCC AAGTTATGGA CTCTGCTTGA CACTAGAGGA 20039
.......... .......... .......... .......... .......... .......... 327
AGAGTTAGTG CACAGGGAGT CCAAATCAGG TAGGATAGTT GATAGTTCAT AATTGGCTAG 20099
.......... .......... .......... .......... .......... .......... 327
ATCTAGGAGG AGGTATGTGA GTGAGAGTTT GGAAAATCAG GGTAGAATAC AAGTTCAGGT 20159
.......... .......... .......... .......... .......... .......... 327
TCCCTAGGAC GATGATATAA TGTAGTACCA TACTACAAGA ATTGACTATG GAATTTATTA 20219
.......... .......... .......... .......... .......... .......... 327
ATATCTAGCT AGAAACCAAT ATAAAAAAAC AATCTACTCC CCTTTCTACT GCTGCTGATA 20279
.......... .......... .......... .......... .......... .......... 327
CTTCTACTCT TTTTTTTTTC TCTCTTGTAC ACCTTCTTGG CTGCTACACT TCTCTAGTTT 20339
.......... .......... .......... .......... .......... .......... 327
CCAATCATGA CAATACATAA ATGCTTGAGG AGCCCATAAC AAATAGTTCT ACCCCACCCA 20399
.......... .......... .......... .......... .......... .......... 327
CCCACACCCT TTCGTAGTAA AGTGTGCCGA CAACAGTTGG TGCCCTCTTC TCGATGGTAT 20459
.......... .......... .......... .......... .......... .......... 327
CCATTGCTTT TCTGCATGCA CACACAAACA AACACTTCTA AATACACATA CTGACTTGTC 20519
.......... .......... .......... .......... .......... .......... 327
GTATTGGCAT GCAGTCATGC ATTGAGACCA AATCCATCAG GACTGCATCC GCACAACACA 20579
.......... .......... .......... .......... .......... .......... 327
AAATCTCACC ATACATGCAT ACGGTGTCTT GGATGTTTCT GTTGTTGGGG CGCTAATATG 20639
.......... .......... .......... .......... .......... .......... 327
TACTTCTACC AAAATGCAAG GACAAACTGT CCCAATTTTA CAGTAAAATA ACTATCATTG 20699
.......... .......... .......... .......... .......... .......... 327
TGAAACAGAC TGTCAGCATC GCTCTCTAAG CTCAGTCTGT ACAGCTTTTA CCAAATAAAA 20759
.......... .......... .......... .......... .......... .......... 327
ATAATGCAAT GGTTTTTGGA AAGAATAAAG GTTTTAGTGG CACACTAATT TCCATAATTT 20819
.......... .......... .......... .......... .......... .......... 327
GACCCTTCAT GTTTATGCTT TCAGTTCATT GGTACTCCAC ATTGGATGGC ACCAGAGGTC 20879
|| || || ||||| | |||||||||| |||||| ||
.......... .......... ....TTTATC GGCACTCCCC ATTGGATGGC ACCAGAAGTT 363
ATTCAAGAAA GTCGTTATGA TGGAAAGGTA TCATGCTATC ATCTCTACGG TGTTCAGCTA 20939
|||||||||| |||||||||| ||| |||
ATTCAAGAAA GTCGTTATGA TGGGAAG... .......... .......... .......... 390
TGGAATTGTT CATTTTAGCA GCTTTTGTGG ATGTTGCCAT TTTACTCTAA AGACTTGGTG 20999
.......... .......... .......... .......... .......... .......... 390
GCCGTAAATT TATGATTGGG TTTTCAGTGA ACAGGATTTC TTTAATATTT TGTTTCTTTG 21059
.......... .......... .......... .......... .......... .......... 390
GGTGTGGAAT GTCCTTGCAT ATGGCAGAAC AAGGTTACAC GTAAATTCAT AAAAGCCATT 21119
.......... .......... .......... .......... .......... .......... 390
AAATAATTGT TATGGAACCC CTGCCAGTGC CAAAACATGT TTATTTCTTT TCCTTGTCTC 21179
.......... .......... .......... .......... .......... .......... 390
TTGATGGTTC CTCAAGCAAA AAAAAAATAA AATAAAATCA TTACCTACTA CTAAGCCTCC 21239
.......... .......... .......... .......... .......... .......... 390
AAAACAAGTC TACTGGTTGC AATTAGGGAT GAAAACGGAT CGGATACGGA CGGATATCAT 21299
.......... .......... .......... .......... .......... .......... 390
CGATATCATA TTTGTTTTCG TATTTCTGGT CGAATTCGGA TTCGAATACG GATAATGTCA 21359
.......... .......... .......... .......... .......... .......... 390
ACTATATCGG ATAAGATACG ATTGGATGTC GACATCATAA ATATATGATT TAAGTACTCG 21419
.......... .......... .......... .......... .......... .......... 390
GATACGGATA CGGTATCGGA TGTAGAACAT TCGAACTCGG ATACGAACTG GTCTGAATCC 21479
.......... .......... .......... .......... .......... .......... 390
CTCTAAACGA ATTCGGTCTC AAATACGGTC GGAAAATATC CGTACCGTTT TCATCCCTAG 21539
.......... .......... .......... .......... .......... .......... 390
TTGCAATGTT GAGAAAATTA TTTTGGCAGC TGGAATTCTT CCTTTAGTTT GTCTTACCAA 21599
.......... .......... .......... .......... .......... .......... 390
AACATTTGTT CTTGTTTCCT GCACCAGGTA GATGTTTGGG CATTAGGTGT ATCTGCAATT 21659
||| ||||| |||| | | || || ||||| |||
.......... .......... .......GTA GATGTATGGG CTCTCGGAGT GTCTGCTATT 423
GAGATGGCAG AGGTAGACAT TGTTCCTTGC TTCTTTCTTT TTTTGACTGT ACACTTTTGT 21719
|| ||||| | ||
GAAATGGCGG AG........ .......... .......... .......... .......... 435
TTTTAATTTT GTGTCGTGAC AATGCTTTTT AATATTTATT TTGTATCTCT GACTGTAGGG 21779
||
.......... .......... .......... .......... .......... ........GG 437
CATGCCACCA AGATCCACTG TACATCCAAT GAGAGTAAGA GATGCTTCTC AATGCCTGTT 21839
| || || || | || | | |||||||| |||
TCTTCCTCCT AGGGCAACAG TGCATCCAAT GAGG...... .......... .......... 471
AGTATCTGCA GTTAATGAGG CTAATAGGTT ATAACAGAAT TAAAAAAATC TGCTCTATCT 21899
.......... .......... .......... .......... .......... .......... 471
TTGGTGCACT GTACTTTTTA TCTCTTTACT GTCAAGGGCG TCGAGGGACA GGGTAGGAGG 21959
.......... .......... .......... .......... .......... .......... 471
ATCCCGGCTA CGTAGTTCAT AGACCAATCT GTGGTGTGGG GCGGAGGTTT TACCCCTCAG 22019
.......... .......... .......... .......... .......... .......... 471
TGCCCGATTG TTTCAGCAAA GGTAGATTAG GGAATTGGGA TAATTGTTCT TTCTTGATTA 22079
.......... .......... .......... .......... .......... .......... 471
TCATCATACG AGTACAAGAA TATATAGGCC ATTCGGCCAT AACAGCTTGG AGCCAATTGC 22139
.......... .......... .......... .......... .......... .......... 471
TCCTAAATCT AAGGCCATTA TCGGCTCTCC TGCCTTCTAG GCTCTCGCCT GTTCAGTGTG 22199
.......... .......... .......... .......... .......... .......... 471
CTCTGCATGC GTGGTGACCG CGCCTACGGT TCTGCTGGTG CGCCATCTGC GGCTCTGCGA 22259
.......... .......... .......... .......... .......... .......... 471
GCATCCTGGG CGTGCCGTTT CCTTGTGTAG GCGCGGTCCC ACATGACATT TACTTTCTTT 22319
.......... .......... .......... .......... .......... .......... 471
CTGATGCATT TGCTTCTTTA CTTTGCCTTG GTAAATATTT GGTATACATA TCAATATATT 22379
.......... .......... .......... .......... .......... .......... 471
GTTTCATCTT CGTTTAGCAT GAATGCTTGA TAGACCGACT AACGATCTCT CTTCCCCCTT 22439
.......... .......... .......... .......... .......... .......... 471
CCCTTATCTC AGGTTATCTT CATGATATCC AGTGAACCAG CACCAATGCT GGAGGATAAG 22499
|| | || ||||||||| | |||||||| | |||||||| ||||||||
.......... ..GTGCTATT TATGATATCC ATTGAACCAG CTCCAATGCT TGAGGATAAA 519
G 22500
|
G 520
********************************************************************************
EST sequence 98 +strand (File: 13610520+)
1 GAGATGTTGC AGCAGTGCAG TCATCCAAAT GTTGTTCGCT ATCTTGGGAG CTACCAAGGC
61 GAAGAGTACC TTTGGATAGT AATGGAGTAT TGTGGGGGTG GAAGTGTTGC TGACTTAATG
121 AATGTCACAG ATGAGGCTTT AGAGGAGTAT CAAATAGCAT TTATTTGTCG AGAGGCATTG
181 AAGGGCCTCT CCTATCTGCA CTCTATTTTT AAAGTACACA GAGATATTAA AGGTGGCAAT
241 ATCTTACTGA CTGATCAAGG AGAGGTTAAG TTAGGTGATT TTGGTGTTGC TGCGCAGCTG
301 ACTAGAACCA TGTCCAAACG TAACACGTTT ATCGGCACTC CCCATTGGAT GGCACCAGAA
361 GTTATTCAAG AAAGTCGTTA TGATGGGAAG GTAGATGTAT GGGCTCTCGG AGTGTCTGCT
421 ATTGAAATGG CGGAGGGTCT TCCTCCTAGG GCAACAGTGC ATCCAATGAG GGTGCTATTT
481 ATGATATCCA TTGAACCAGC TCCAATGCTT GAGGATAAAG AGAAATGGTC TCTTGTATTC
541 CATGATTTTG TTGCCAAGTG CCTTACAAAA GACACCCGAC TTCGTCCAAC TGCCTCCGAG
601 ATGCTAAAGC ACAAATTCAT CGAAAAATTC AAAGCAGGAG CTTCTGTAAT GATGCCGAAG
661 ATTGAGAAGG CCAAACAAAT TAGGGCATCA ATGGCCTTGG AAGCGCCAAA TATTGTTTCC
721 GAGACTCCCC GAGTATTTGG AGTCC
Predicted gene structure (within gDNA segment 18276 to 22500):
Exon 1 18660 18734 ( 75 n); cDNA 1 75 ( 75 n); score: 0.853
Intron 1 18735 18859 ( 125 n); Pd: 0.980 (s: 0.84), Pa: 0.787 (s: 0.80)
Exon 2 18860 18967 ( 108 n); cDNA 76 183 ( 108 n); score: 0.769
Intron 2 18968 19065 ( 98 n); Pd: 0.000 (s: 0.72), Pa: 0.953 (s: 0.84)
Exon 3 19066 19156 ( 91 n); cDNA 184 274 ( 91 n); score: 0.813
Intron 3 19157 19270 ( 114 n); Pd: 0.984 (s: 0.80), Pa: 0.000 (s: 0.88)
Exon 4 19271 19323 ( 53 n); cDNA 275 327 ( 53 n); score: 0.887
Intron 4 19324 20843 (1520 n); Pd: 0.770 (s: 0.88), Pa: 0.962 (s: 0.88)
Exon 5 20844 20906 ( 63 n); cDNA 328 390 ( 63 n); score: 0.889
Intron 5 20907 21626 ( 720 n); Pd: 0.929 (s: 0.92), Pa: 0.999 (s: 0.80)
Exon 6 21627 21671 ( 45 n); cDNA 391 435 ( 45 n); score: 0.800
Intron 6 21672 21777 ( 106 n); Pd: 0.992 (s: 0.80), Pa: 0.998 (s: 0)
Exon 7 21778 21813 ( 36 n); cDNA 436 471 ( 36 n); score: 0.694
Intron 7 21814 22451 ( 638 n); Pd: 0.596 (s: 0), Pa: 0.894 (s: 0.84)
Exon 8 22452 22500 ( 49 n); cDNA 472 520 ( 49 n); score: 0.837
MATCH 21326110+ 13610520+ 0.831 520 0.698 C
PGS_21326110+_13610520+ (18660 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500)
Alignment (genomic DNA sequence = upper lines):
GAGATGCTGC AGCAGTGTAG CCATCCAAAT GTTGTCCGCT ACTTTGGAAG CTACCAAGGA 18719
|||||| ||| ||||||| || ||||||||| ||||| |||| | |||| || |||||||||
GAGATGTTGC AGCAGTGCAG TCATCCAAAT GTTGTTCGCT ATCTTGGGAG CTACCAAGGC 60
GAGGACTACC TATGGGTACA ATCAAATAGC CTGATAGTAT CCATTTTATT AACATTAAGA 18779
|| || |||| | |||
GAAGAGTACC TTTGG..... .......... .......... .......... .......... 75
AATAACTATC ATTGGGAGAT TTCTCTACTT CTTGAGTCAT TTAACATGGG CTTGATGCAA 18839
.......... .......... .......... .......... .......... .......... 75
ATGCGATTCT CAACTTACAG ATAGTTATGG AGTACTGTGG TGGTGGAAGT GTTGCTGATT 18899
||||| |||| |||| ||||| ||||||||| |||||||| |
.......... .......... ATAGTAATGG AGTATTGTGG GGGTGGAAGT GTTGCTGACT 115
TGATAGGCAT CACAGAGGAG CCTCTTGATG AATCCCAAAT AGCTTATATA TGTAGAGAAG 18959
| || | |||||| ||| || | || | | | ||||| ||| | ||| ||| |||| |
TAATGAATGT CACAGATGAG GCTTTAGAGG AGTATCAAAT AGCATTTATT TGTCGAGAGG 175
CACTAAAGGT TCTAACATAG TTGCATCAGA TTTGAAGTAT TTGCTGCCTT GTTGGGCAAC 19019
|| | |||
CATTGAAG.. .......... .......... .......... .......... .......... 183
TAAATGTATT TGGATATTGA ACTTTTGCGT GCTTATTTTC TTCCAGGGCC TTGCTTACCT 19079
|||| | | || ||
.......... .......... .......... .......... ......GGCC TCTCCTATCT 197
GCACTCCATT TTTAAAGTTC ATAGAGATAT TAAGGGTGGC AACATTCTTC TAACTGAGCA 19139
|||||| ||| |||||||| | | |||||||| ||| |||||| || || | | | ||||| ||
GCACTCTATT TTTAAAGTAC ACAGAGATAT TAAAGGTGGC AATATCTTAC TGACTGATCA 257
AGGCGAGGTG AAGTTGGGTA AGCACATTTG TTTTCTTCAA AAGTTTTAGT TTGCATTCTT 19199
||| ||||| ||||| |
AGGAGAGGTT AAGTTAG... .......... .......... .......... .......... 274
AGCACCCATA TTTCTGCATG TCCTGACTCT GTGGTCGGCA TGCTGTGGCG CCACAACAAT 19259
.......... .......... .......... .......... .......... .......... 274
GTGCAAAACA GGTGATTTTG GTGTAGCTGC CCAGCTGACA AGAACCATGT CAAAGCGCAA 19319
||||||||| |||| ||||| |||||||| |||||||||| | || || ||
.......... .GTGATTTTG GTGTTGCTGC GCAGCTGACT AGAACCATGT CCAAACGTAA 323
CACGGTATTC TAAACAGTGT TTGTTTTGCC ATTCAAATCC ATAGTTCAAG AAACTTCACA 19379
||||
CACG...... .......... .......... .......... .......... .......... 327
TCGATGTAAC AAACAAAATG AAGTGGCAGA TGAAACTTGT CCATGCCAGT TTACCATAAG 19439
.......... .......... .......... .......... .......... .......... 327
CGGACCCATT TGTGCTTGTG CATAGTTCTT CAATGTGATG GTACTTTTAT GGGAACTTGA 19499
.......... .......... .......... .......... .......... .......... 327
AGCAAGTCTG TGTTGGAAAA TGATTGCTGT GAAGTCCTAA CTGTTTCTTT AAGTGTCATA 19559
.......... .......... .......... .......... .......... .......... 327
CTGCAAGTGC ATTATGGTCT ATTAGGTTTA AAATGAAAAA TAAGAAAGTA TATATTTGTT 19619
.......... .......... .......... .......... .......... .......... 327
ATCTAGTATG CCTCGCCTAA TTCCTTGGCA TTTCTTCCAT TCTTTGAAAC CCATACTGGT 19679
.......... .......... .......... .......... .......... .......... 327
GGAACCTAGT TGAAGTGGTT CCTGTACAAA TACTCTCTGC ACTGCTTCTT CTCCCTTTCT 19739
.......... .......... .......... .......... .......... .......... 327
TGTCGTGACA GCCTCTAGTC CCCATATATC CCATTATGAA TCTGCTCACT CCCCCATTTG 19799
.......... .......... .......... .......... .......... .......... 327
GCTTCTTCCT AGGCCACCAC TCAACAATTC TTCTGTTCTT GATGACTGCG ATGCTCCATT 19859
.......... .......... .......... .......... .......... .......... 327
CGATCTGGCA AATTGCTGCC TTGCTGGAGC TATTCAAGAA CGTAGAGGGT TACTGTGACA 19919
.......... .......... .......... .......... .......... .......... 327
TTAGCATATC AAACCAACAG GTCTGTTGGA AATCATAATC ACAATGAACC TCCAAGTGGG 19979
.......... .......... .......... .......... .......... .......... 327
AAATATTATC CAGGGCGTCA TCTTACCTCC AAGTTATGGA CTCTGCTTGA CACTAGAGGA 20039
.......... .......... .......... .......... .......... .......... 327
AGAGTTAGTG CACAGGGAGT CCAAATCAGG TAGGATAGTT GATAGTTCAT AATTGGCTAG 20099
.......... .......... .......... .......... .......... .......... 327
ATCTAGGAGG AGGTATGTGA GTGAGAGTTT GGAAAATCAG GGTAGAATAC AAGTTCAGGT 20159
.......... .......... .......... .......... .......... .......... 327
TCCCTAGGAC GATGATATAA TGTAGTACCA TACTACAAGA ATTGACTATG GAATTTATTA 20219
.......... .......... .......... .......... .......... .......... 327
ATATCTAGCT AGAAACCAAT ATAAAAAAAC AATCTACTCC CCTTTCTACT GCTGCTGATA 20279
.......... .......... .......... .......... .......... .......... 327
CTTCTACTCT TTTTTTTTTC TCTCTTGTAC ACCTTCTTGG CTGCTACACT TCTCTAGTTT 20339
.......... .......... .......... .......... .......... .......... 327
CCAATCATGA CAATACATAA ATGCTTGAGG AGCCCATAAC AAATAGTTCT ACCCCACCCA 20399
.......... .......... .......... .......... .......... .......... 327
CCCACACCCT TTCGTAGTAA AGTGTGCCGA CAACAGTTGG TGCCCTCTTC TCGATGGTAT 20459
.......... .......... .......... .......... .......... .......... 327
CCATTGCTTT TCTGCATGCA CACACAAACA AACACTTCTA AATACACATA CTGACTTGTC 20519
.......... .......... .......... .......... .......... .......... 327
GTATTGGCAT GCAGTCATGC ATTGAGACCA AATCCATCAG GACTGCATCC GCACAACACA 20579
.......... .......... .......... .......... .......... .......... 327
AAATCTCACC ATACATGCAT ACGGTGTCTT GGATGTTTCT GTTGTTGGGG CGCTAATATG 20639
.......... .......... .......... .......... .......... .......... 327
TACTTCTACC AAAATGCAAG GACAAACTGT CCCAATTTTA CAGTAAAATA ACTATCATTG 20699
.......... .......... .......... .......... .......... .......... 327
TGAAACAGAC TGTCAGCATC GCTCTCTAAG CTCAGTCTGT ACAGCTTTTA CCAAATAAAA 20759
.......... .......... .......... .......... .......... .......... 327
ATAATGCAAT GGTTTTTGGA AAGAATAAAG GTTTTAGTGG CACACTAATT TCCATAATTT 20819
.......... .......... .......... .......... .......... .......... 327
GACCCTTCAT GTTTATGCTT TCAGTTCATT GGTACTCCAC ATTGGATGGC ACCAGAGGTC 20879
|| || || ||||| | |||||||||| |||||| ||
.......... .......... ....TTTATC GGCACTCCCC ATTGGATGGC ACCAGAAGTT 363
ATTCAAGAAA GTCGTTATGA TGGAAAGGTA TCATGCTATC ATCTCTACGG TGTTCAGCTA 20939
|||||||||| |||||||||| ||| |||
ATTCAAGAAA GTCGTTATGA TGGGAAG... .......... .......... .......... 390
TGGAATTGTT CATTTTAGCA GCTTTTGTGG ATGTTGCCAT TTTACTCTAA AGACTTGGTG 20999
.......... .......... .......... .......... .......... .......... 390
GCCGTAAATT TATGATTGGG TTTTCAGTGA ACAGGATTTC TTTAATATTT TGTTTCTTTG 21059
.......... .......... .......... .......... .......... .......... 390
GGTGTGGAAT GTCCTTGCAT ATGGCAGAAC AAGGTTACAC GTAAATTCAT AAAAGCCATT 21119
.......... .......... .......... .......... .......... .......... 390
AAATAATTGT TATGGAACCC CTGCCAGTGC CAAAACATGT TTATTTCTTT TCCTTGTCTC 21179
.......... .......... .......... .......... .......... .......... 390
TTGATGGTTC CTCAAGCAAA AAAAAAATAA AATAAAATCA TTACCTACTA CTAAGCCTCC 21239
.......... .......... .......... .......... .......... .......... 390
AAAACAAGTC TACTGGTTGC AATTAGGGAT GAAAACGGAT CGGATACGGA CGGATATCAT 21299
.......... .......... .......... .......... .......... .......... 390
CGATATCATA TTTGTTTTCG TATTTCTGGT CGAATTCGGA TTCGAATACG GATAATGTCA 21359
.......... .......... .......... .......... .......... .......... 390
ACTATATCGG ATAAGATACG ATTGGATGTC GACATCATAA ATATATGATT TAAGTACTCG 21419
.......... .......... .......... .......... .......... .......... 390
GATACGGATA CGGTATCGGA TGTAGAACAT TCGAACTCGG ATACGAACTG GTCTGAATCC 21479
.......... .......... .......... .......... .......... .......... 390
CTCTAAACGA ATTCGGTCTC AAATACGGTC GGAAAATATC CGTACCGTTT TCATCCCTAG 21539
.......... .......... .......... .......... .......... .......... 390
TTGCAATGTT GAGAAAATTA TTTTGGCAGC TGGAATTCTT CCTTTAGTTT GTCTTACCAA 21599
.......... .......... .......... .......... .......... .......... 390
AACATTTGTT CTTGTTTCCT GCACCAGGTA GATGTTTGGG CATTAGGTGT ATCTGCAATT 21659
||| ||||| |||| | | || || ||||| |||
.......... .......... .......GTA GATGTATGGG CTCTCGGAGT GTCTGCTATT 423
GAGATGGCAG AGGTAGACAT TGTTCCTTGC TTCTTTCTTT TTTTGACTGT ACACTTTTGT 21719
|| ||||| | ||
GAAATGGCGG AG........ .......... .......... .......... .......... 435
TTTTAATTTT GTGTCGTGAC AATGCTTTTT AATATTTATT TTGTATCTCT GACTGTAGGG 21779
||
.......... .......... .......... .......... .......... ........GG 437
CATGCCACCA AGATCCACTG TACATCCAAT GAGAGTAAGA GATGCTTCTC AATGCCTGTT 21839
| || || || | || | | |||||||| |||
TCTTCCTCCT AGGGCAACAG TGCATCCAAT GAGG...... .......... .......... 471
AGTATCTGCA GTTAATGAGG CTAATAGGTT ATAACAGAAT TAAAAAAATC TGCTCTATCT 21899
.......... .......... .......... .......... .......... .......... 471
TTGGTGCACT GTACTTTTTA TCTCTTTACT GTCAAGGGCG TCGAGGGACA GGGTAGGAGG 21959
.......... .......... .......... .......... .......... .......... 471
ATCCCGGCTA CGTAGTTCAT AGACCAATCT GTGGTGTGGG GCGGAGGTTT TACCCCTCAG 22019
.......... .......... .......... .......... .......... .......... 471
TGCCCGATTG TTTCAGCAAA GGTAGATTAG GGAATTGGGA TAATTGTTCT TTCTTGATTA 22079
.......... .......... .......... .......... .......... .......... 471
TCATCATACG AGTACAAGAA TATATAGGCC ATTCGGCCAT AACAGCTTGG AGCCAATTGC 22139
.......... .......... .......... .......... .......... .......... 471
TCCTAAATCT AAGGCCATTA TCGGCTCTCC TGCCTTCTAG GCTCTCGCCT GTTCAGTGTG 22199
.......... .......... .......... .......... .......... .......... 471
CTCTGCATGC GTGGTGACCG CGCCTACGGT TCTGCTGGTG CGCCATCTGC GGCTCTGCGA 22259
.......... .......... .......... .......... .......... .......... 471
GCATCCTGGG CGTGCCGTTT CCTTGTGTAG GCGCGGTCCC ACATGACATT TACTTTCTTT 22319
.......... .......... .......... .......... .......... .......... 471
CTGATGCATT TGCTTCTTTA CTTTGCCTTG GTAAATATTT GGTATACATA TCAATATATT 22379
.......... .......... .......... .......... .......... .......... 471
GTTTCATCTT CGTTTAGCAT GAATGCTTGA TAGACCGACT AACGATCTCT CTTCCCCCTT 22439
.......... .......... .......... .......... .......... .......... 471
CCCTTATCTC AGGTTATCTT CATGATATCC AGTGAACCAG CACCAATGCT GGAGGATAAG 22499
|| | || ||||||||| | |||||||| | |||||||| ||||||||
.......... ..GTGCTATT TATGATATCC ATTGAACCAG CTCCAATGCT TGAGGATAAA 519
G 22500
|
G 520
********************************************************************************
EST sequence 49 +strand (File: 13316811+)
1 GCACGAGGTA GTTATGGAGT ACTGTGGTGG TGGAAGTGTT GCTGATTTGA TAGGCATCAC
61 AGAGGAGCCT CTTGATGAAT CCCAAATAGC TTATATATGT AGAGAAGCAC TAAAGGGCCT
121 TGCTTACCTG CACTCCATTT TTAAAGTTCA TAGAGATATT AAGGGTGGCA ACATTCTTCT
181 AACTGAGCAA GGCGAGGTGA AGTTGGGTGA TTTTGGTGTA GCTGCCCAGC TGACAAGAAC
241 CATGTCAAAG CGCAACACGT TCATTGGTAC TCCACATTGG ATGGCACCAG AGGTCATTCA
301 AGAAAGTCGT TATGATGGAA AGGTAGATGT TTGGGCATTA CGTGTATC
Predicted gene structure (within gDNA segment 18521 to 21989):
Exon 1 18854 18967 ( 114 n); cDNA 1 115 ( 115 n); score: 0.956
Intron 1 18968 19065 ( 98 n); Pd: 0.000 (s: 1.00), Pa: 0.953 (s: 1.00)
Exon 2 19066 19156 ( 91 n); cDNA 116 206 ( 91 n); score: 1.000
Intron 2 19157 19270 ( 114 n); Pd: 0.984 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 3 19271 19323 ( 53 n); cDNA 207 259 ( 53 n); score: 1.000
Intron 3 19324 20843 (1520 n); Pd: 0.770 (s: 1.00), Pa: 0.962 (s: 1.00)
Exon 4 20844 20906 ( 63 n); cDNA 260 322 ( 63 n); score: 1.000
Intron 4 20907 21626 ( 720 n); Pd: 0.929 (s: 1.00), Pa: 0.999 (s: 0)
Exon 5 21627 21652 ( 26 n); cDNA 323 348 ( 26 n); score: 0.962
MATCH 21326110+ 13316811+ 0.984 347 0.997 C
PGS_21326110+_13316811+ (18854 18967,19066 19156,19271 19323,20844 20906,21627 21652)
Alignment (genomic DNA sequence = upper lines):
TTAC-AGATA GTTATGGAGT ACTGTGGTGG TGGAAGTGTT GCTGATTTGA TAGGCATCAC 18912
|| || || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCACGAGGTA GTTATGGAGT ACTGTGGTGG TGGAAGTGTT GCTGATTTGA TAGGCATCAC 60
AGAGGAGCCT CTTGATGAAT CCCAAATAGC TTATATATGT AGAGAAGCAC TAAAGGTTCT 18972
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||
AGAGGAGCCT CTTGATGAAT CCCAAATAGC TTATATATGT AGAGAAGCAC TAAAG..... 115
AACATAGTTG CATCAGATTT GAAGTATTTG CTGCCTTGTT GGGCAACTAA ATGTATTTGG 19032
.......... .......... .......... .......... .......... .......... 115
ATATTGAACT TTTGCGTGCT TATTTTCTTC CAGGGCCTTG CTTACCTGCA CTCCATTTTT 19092
||||||| |||||||||| ||||||||||
.......... .......... .......... ...GGCCTTG CTTACCTGCA CTCCATTTTT 142
AAAGTTCATA GAGATATTAA GGGTGGCAAC ATTCTTCTAA CTGAGCAAGG CGAGGTGAAG 19152
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAGTTCATA GAGATATTAA GGGTGGCAAC ATTCTTCTAA CTGAGCAAGG CGAGGTGAAG 202
TTGGGTAAGC ACATTTGTTT TCTTCAAAAG TTTTAGTTTG CATTCTTAGC ACCCATATTT 19212
||||
TTGG...... .......... .......... .......... .......... .......... 206
CTGCATGTCC TGACTCTGTG GTCGGCATGC TGTGGCGCCA CAACAATGTG CAAAACAGGT 19272
||
.......... .......... .......... .......... .......... ........GT 208
GATTTTGGTG TAGCTGCCCA GCTGACAAGA ACCATGTCAA AGCGCAACAC GGTATTCTAA 19332
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |
GATTTTGGTG TAGCTGCCCA GCTGACAAGA ACCATGTCAA AGCGCAACAC G......... 259
ACAGTGTTTG TTTTGCCATT CAAATCCATA GTTCAAGAAA CTTCACATCG ATGTAACAAA 19392
.......... .......... .......... .......... .......... .......... 259
CAAAATGAAG TGGCAGATGA AACTTGTCCA TGCCAGTTTA CCATAAGCGG ACCCATTTGT 19452
.......... .......... .......... .......... .......... .......... 259
GCTTGTGCAT AGTTCTTCAA TGTGATGGTA CTTTTATGGG AACTTGAAGC AAGTCTGTGT 19512
.......... .......... .......... .......... .......... .......... 259
TGGAAAATGA TTGCTGTGAA GTCCTAACTG TTTCTTTAAG TGTCATACTG CAAGTGCATT 19572
.......... .......... .......... .......... .......... .......... 259
ATGGTCTATT AGGTTTAAAA TGAAAAATAA GAAAGTATAT ATTTGTTATC TAGTATGCCT 19632
.......... .......... .......... .......... .......... .......... 259
CGCCTAATTC CTTGGCATTT CTTCCATTCT TTGAAACCCA TACTGGTGGA ACCTAGTTGA 19692
.......... .......... .......... .......... .......... .......... 259
AGTGGTTCCT GTACAAATAC TCTCTGCACT GCTTCTTCTC CCTTTCTTGT CGTGACAGCC 19752
.......... .......... .......... .......... .......... .......... 259
TCTAGTCCCC ATATATCCCA TTATGAATCT GCTCACTCCC CCATTTGGCT TCTTCCTAGG 19812
.......... .......... .......... .......... .......... .......... 259
CCACCACTCA ACAATTCTTC TGTTCTTGAT GACTGCGATG CTCCATTCGA TCTGGCAAAT 19872
.......... .......... .......... .......... .......... .......... 259
TGCTGCCTTG CTGGAGCTAT TCAAGAACGT AGAGGGTTAC TGTGACATTA GCATATCAAA 19932
.......... .......... .......... .......... .......... .......... 259
CCAACAGGTC TGTTGGAAAT CATAATCACA ATGAACCTCC AAGTGGGAAA TATTATCCAG 19992
.......... .......... .......... .......... .......... .......... 259
GGCGTCATCT TACCTCCAAG TTATGGACTC TGCTTGACAC TAGAGGAAGA GTTAGTGCAC 20052
.......... .......... .......... .......... .......... .......... 259
AGGGAGTCCA AATCAGGTAG GATAGTTGAT AGTTCATAAT TGGCTAGATC TAGGAGGAGG 20112
.......... .......... .......... .......... .......... .......... 259
TATGTGAGTG AGAGTTTGGA AAATCAGGGT AGAATACAAG TTCAGGTTCC CTAGGACGAT 20172
.......... .......... .......... .......... .......... .......... 259
GATATAATGT AGTACCATAC TACAAGAATT GACTATGGAA TTTATTAATA TCTAGCTAGA 20232
.......... .......... .......... .......... .......... .......... 259
AACCAATATA AAAAAACAAT CTACTCCCCT TTCTACTGCT GCTGATACTT CTACTCTTTT 20292
.......... .......... .......... .......... .......... .......... 259
TTTTTTCTCT CTTGTACACC TTCTTGGCTG CTACACTTCT CTAGTTTCCA ATCATGACAA 20352
.......... .......... .......... .......... .......... .......... 259
TACATAAATG CTTGAGGAGC CCATAACAAA TAGTTCTACC CCACCCACCC ACACCCTTTC 20412
.......... .......... .......... .......... .......... .......... 259
GTAGTAAAGT GTGCCGACAA CAGTTGGTGC CCTCTTCTCG ATGGTATCCA TTGCTTTTCT 20472
.......... .......... .......... .......... .......... .......... 259
GCATGCACAC ACAAACAAAC ACTTCTAAAT ACACATACTG ACTTGTCGTA TTGGCATGCA 20532
.......... .......... .......... .......... .......... .......... 259
GTCATGCATT GAGACCAAAT CCATCAGGAC TGCATCCGCA CAACACAAAA TCTCACCATA 20592
.......... .......... .......... .......... .......... .......... 259
CATGCATACG GTGTCTTGGA TGTTTCTGTT GTTGGGGCGC TAATATGTAC TTCTACCAAA 20652
.......... .......... .......... .......... .......... .......... 259
ATGCAAGGAC AAACTGTCCC AATTTTACAG TAAAATAACT ATCATTGTGA AACAGACTGT 20712
.......... .......... .......... .......... .......... .......... 259
CAGCATCGCT CTCTAAGCTC AGTCTGTACA GCTTTTACCA AATAAAAATA ATGCAATGGT 20772
.......... .......... .......... .......... .......... .......... 259
TTTTGGAAAG AATAAAGGTT TTAGTGGCAC ACTAATTTCC ATAATTTGAC CCTTCATGTT 20832
.......... .......... .......... .......... .......... .......... 259
TATGCTTTCA GTTCATTGGT ACTCCACATT GGATGGCACC AGAGGTCATT CAAGAAAGTC 20892
||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .TTCATTGGT ACTCCACATT GGATGGCACC AGAGGTCATT CAAGAAAGTC 308
GTTATGATGG AAAGGTATCA TGCTATCATC TCTACGGTGT TCAGCTATGG AATTGTTCAT 20952
|||||||||| ||||
GTTATGATGG AAAG...... .......... .......... .......... .......... 322
TTTAGCAGCT TTTGTGGATG TTGCCATTTT ACTCTAAAGA CTTGGTGGCC GTAAATTTAT 21012
.......... .......... .......... .......... .......... .......... 322
GATTGGGTTT TCAGTGAACA GGATTTCTTT AATATTTTGT TTCTTTGGGT GTGGAATGTC 21072
.......... .......... .......... .......... .......... .......... 322
CTTGCATATG GCAGAACAAG GTTACACGTA AATTCATAAA AGCCATTAAA TAATTGTTAT 21132
.......... .......... .......... .......... .......... .......... 322
GGAACCCCTG CCAGTGCCAA AACATGTTTA TTTCTTTTCC TTGTCTCTTG ATGGTTCCTC 21192
.......... .......... .......... .......... .......... .......... 322
AAGCAAAAAA AAAATAAAAT AAAATCATTA CCTACTACTA AGCCTCCAAA ACAAGTCTAC 21252
.......... .......... .......... .......... .......... .......... 322
TGGTTGCAAT TAGGGATGAA AACGGATCGG ATACGGACGG ATATCATCGA TATCATATTT 21312
.......... .......... .......... .......... .......... .......... 322
GTTTTCGTAT TTCTGGTCGA ATTCGGATTC GAATACGGAT AATGTCAACT ATATCGGATA 21372
.......... .......... .......... .......... .......... .......... 322
AGATACGATT GGATGTCGAC ATCATAAATA TATGATTTAA GTACTCGGAT ACGGATACGG 21432
.......... .......... .......... .......... .......... .......... 322
TATCGGATGT AGAACATTCG AACTCGGATA CGAACTGGTC TGAATCCCTC TAAACGAATT 21492
.......... .......... .......... .......... .......... .......... 322
CGGTCTCAAA TACGGTCGGA AAATATCCGT ACCGTTTTCA TCCCTAGTTG CAATGTTGAG 21552
.......... .......... .......... .......... .......... .......... 322
AAAATTATTT TGGCAGCTGG AATTCTTCCT TTAGTTTGTC TTACCAAAAC ATTTGTTCTT 21612
.......... .......... .......... .......... .......... .......... 322
GTTTCCTGCA CCAGGTAGAT GTTTGGGCAT TAGGTGTATC 21652
|||||| |||||||||| || |||||||
.......... ....GTAGAT GTTTGGGCAT TACGTGTATC 348
********************************************************************************
EST sequence 67 +strand (File: 13263258+)
1 CAGCTCTTGA CGAACCGCGA ATAGCTTATA TATGATCGAG AAACACTAAA GGGTCTTGCT
61 TACTTGCACA CAATTTTCAA AGTTCATAGA GATATTAAGG GTGGCAACAT TCTACTGACT
121 GAGCAAGGCG AGGTGAAGTT GGGCGATTTT GGTGTTGCTG CCCAACTGGC GAAGAACCAT
181 GTCAAAGCGC AACACGTTCA TCGGTACTCC ACACTGGATG GCACCAGAGG TCATTCAAGA
241 GAGTCGGTTT GATGGGAAGG TAGATGTTTG AGCTCTTGGA GAGACTGCAT TAGAGATGGC
301 ATAGGGCATG CCACCGAGAT CCACTGTGCA TCCAATGAGA GTGATCTTCA TGATATCTAG
361 TGAACGTGCA ACGATGCTGG AGGATAAGGA GAAAGGGTCT TTTCTCTTTG CAGAATATAA
421 TGGCCAAGGC CCTTACAAGG GATGCGGGAC TCCGGGCCGG TGGGATGGAG ATGCTTAGGC
481 GAAAATTATT TGGAAGTGCG GCACTGGGGG CTTTGAAATT GGTGGGCGAG GATTCGGGGG
541 CCAAGATCAT GCAAGAAACC GGTGGGCGAA ACAACCTGCG TTGCTTTCAA GGATGAATGG
601 GAAGCGAACG TTCGAATTTT TTTAAAAATT GGAAAAAATG GTTGTTTTAA CATTGGGGTA
661 AGTCGATTAG AAAAACAAAT ATATGGTTCA GGAGGTGAAT TTGTGGTAAT TAATGGAAAA
721 TCTAAAAAAT AGAGAAAAAA AAATTGAAAT TATTAGATTT GTAAAAAGAA AAAATATAAT
781 TAGTGATTAT GAGATTAAAT TTTATAAATC AAAAATAAAA AAGACAAACA CTTTTTAAAA
841 TCTCTTAACC GAATAAAACT ATTTTTAATA CCGATAAAGA GCCAAAATAT AGGATAT
Predicted gene structure (within gDNA segment 18542 to 22500):
Exon 1 18917 18967 ( 51 n); cDNA 1 51 ( 51 n); score: 0.804
Intron 1 18968 19065 ( 98 n); Pd: 0.000 (s: 0.82), Pa: 0.953 (s: 0.90)
Exon 2 19066 19156 ( 91 n); cDNA 52 142 ( 91 n); score: 0.923
Intron 2 19157 19270 ( 114 n); Pd: 0.984 (s: 0.96), Pa: 0.000 (s: 0.88)
Exon 3 19271 19323 ( 53 n); cDNA 143 196 ( 54 n); score: 0.887
Intron 3 19324 20843 (1520 n); Pd: 0.770 (s: 0.90), Pa: 0.962 (s: 0.94)
Exon 4 20844 20906 ( 63 n); cDNA 197 259 ( 63 n); score: 0.905
Intron 4 20907 21626 ( 720 n); Pd: 0.929 (s: 0.90), Pa: 0.999 (s: 0.76)
Exon 5 21627 21671 ( 45 n); cDNA 260 304 ( 45 n); score: 0.756
Intron 5 21672 21777 ( 106 n); Pd: 0.992 (s: 0.76), Pa: 0.998 (s: 0)
Exon 6 21778 21813 ( 36 n); cDNA 305 340 ( 36 n); score: 0.944
Intron 6 21814 22451 ( 638 n); Pd: 0.596 (s: 0), Pa: 0.894 (s: 0.88)
Exon 7 22452 22500 ( 49 n); cDNA 341 389 ( 49 n); score: 0.878
MATCH 21326110+ 13263258+ 0.888 388 0.433 C
PGS_21326110+_13263258+ (18917 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500)
Alignment (genomic DNA sequence = upper lines):
GAGCCTCTTG ATGAATCCCA AATAGCTTAT ATATG-TAGA GAAGCACTAA AGGTTCTAAC 18975
|| |||||| | ||| | | |||||||||| ||||| | || ||| |||||| ||
CAG-CTCTTG ACGAACCGCG AATAGCTTAT ATATGATCGA GAAACACTAA AG........ 51
ATAGTTGCAT CAGATTTGAA GTATTTGCTG CCTTGTTGGG CAACTAAATG TATTTGGATA 19035
.......... .......... .......... .......... .......... .......... 51
TTGAACTTTT GCGTGCTTAT TTTCTTCCAG GGCCTTGCTT ACCTGCACTC CATTTTTAAA 19095
|| ||||||| || ||||| | ||||| |||
.......... .......... .......... GGTCTTGCTT ACTTGCACAC AATTTTCAAA 81
GTTCATAGAG ATATTAAGGG TGGCAACATT CTTCTAACTG AGCAAGGCGA GGTGAAGTTG 19155
|||||||||| |||||||||| |||||||||| || || |||| |||||||||| ||||||||||
GTTCATAGAG ATATTAAGGG TGGCAACATT CTACTGACTG AGCAAGGCGA GGTGAAGTTG 141
GGTAAGCACA TTTGTTTTCT TCAAAAGTTT TAGTTTGCAT TCTTAGCACC CATATTTCTG 19215
|
G......... .......... .......... .......... .......... .......... 142
CATGTCCTGA CTCTGTGGTC GGCATGCTGT GGCGCCACAA CAATGTGCAA AACAGGTGAT 19275
| |||
.......... .......... .......... .......... .......... .....GCGAT 147
TTTGGTGTAG CTGCCCAGCT GAC-AAGAAC CATGTCAAAG CGCAACACGG TATTCTAAAC 19334
|||||||| | ||||||| || | | |||||| |||||||||| |||||||||
TTTGGTGTTG CTGCCCAACT GGCGAAGAAC CATGTCAAAG CGCAACACG. .......... 196
AGTGTTTGTT TTGCCATTCA AATCCATAGT TCAAGAAACT TCACATCGAT GTAACAAACA 19394
.......... .......... .......... .......... .......... .......... 196
AAATGAAGTG GCAGATGAAA CTTGTCCATG CCAGTTTACC ATAAGCGGAC CCATTTGTGC 19454
.......... .......... .......... .......... .......... .......... 196
TTGTGCATAG TTCTTCAATG TGATGGTACT TTTATGGGAA CTTGAAGCAA GTCTGTGTTG 19514
.......... .......... .......... .......... .......... .......... 196
GAAAATGATT GCTGTGAAGT CCTAACTGTT TCTTTAAGTG TCATACTGCA AGTGCATTAT 19574
.......... .......... .......... .......... .......... .......... 196
GGTCTATTAG GTTTAAAATG AAAAATAAGA AAGTATATAT TTGTTATCTA GTATGCCTCG 19634
.......... .......... .......... .......... .......... .......... 196
CCTAATTCCT TGGCATTTCT TCCATTCTTT GAAACCCATA CTGGTGGAAC CTAGTTGAAG 19694
.......... .......... .......... .......... .......... .......... 196
TGGTTCCTGT ACAAATACTC TCTGCACTGC TTCTTCTCCC TTTCTTGTCG TGACAGCCTC 19754
.......... .......... .......... .......... .......... .......... 196
TAGTCCCCAT ATATCCCATT ATGAATCTGC TCACTCCCCC ATTTGGCTTC TTCCTAGGCC 19814
.......... .......... .......... .......... .......... .......... 196
ACCACTCAAC AATTCTTCTG TTCTTGATGA CTGCGATGCT CCATTCGATC TGGCAAATTG 19874
.......... .......... .......... .......... .......... .......... 196
CTGCCTTGCT GGAGCTATTC AAGAACGTAG AGGGTTACTG TGACATTAGC ATATCAAACC 19934
.......... .......... .......... .......... .......... .......... 196
AACAGGTCTG TTGGAAATCA TAATCACAAT GAACCTCCAA GTGGGAAATA TTATCCAGGG 19994
.......... .......... .......... .......... .......... .......... 196
CGTCATCTTA CCTCCAAGTT ATGGACTCTG CTTGACACTA GAGGAAGAGT TAGTGCACAG 20054
.......... .......... .......... .......... .......... .......... 196
GGAGTCCAAA TCAGGTAGGA TAGTTGATAG TTCATAATTG GCTAGATCTA GGAGGAGGTA 20114
.......... .......... .......... .......... .......... .......... 196
TGTGAGTGAG AGTTTGGAAA ATCAGGGTAG AATACAAGTT CAGGTTCCCT AGGACGATGA 20174
.......... .......... .......... .......... .......... .......... 196
TATAATGTAG TACCATACTA CAAGAATTGA CTATGGAATT TATTAATATC TAGCTAGAAA 20234
.......... .......... .......... .......... .......... .......... 196
CCAATATAAA AAAACAATCT ACTCCCCTTT CTACTGCTGC TGATACTTCT ACTCTTTTTT 20294
.......... .......... .......... .......... .......... .......... 196
TTTTCTCTCT TGTACACCTT CTTGGCTGCT ACACTTCTCT AGTTTCCAAT CATGACAATA 20354
.......... .......... .......... .......... .......... .......... 196
CATAAATGCT TGAGGAGCCC ATAACAAATA GTTCTACCCC ACCCACCCAC ACCCTTTCGT 20414
.......... .......... .......... .......... .......... .......... 196
AGTAAAGTGT GCCGACAACA GTTGGTGCCC TCTTCTCGAT GGTATCCATT GCTTTTCTGC 20474
.......... .......... .......... .......... .......... .......... 196
ATGCACACAC AAACAAACAC TTCTAAATAC ACATACTGAC TTGTCGTATT GGCATGCAGT 20534
.......... .......... .......... .......... .......... .......... 196
CATGCATTGA GACCAAATCC ATCAGGACTG CATCCGCACA ACACAAAATC TCACCATACA 20594
.......... .......... .......... .......... .......... .......... 196
TGCATACGGT GTCTTGGATG TTTCTGTTGT TGGGGCGCTA ATATGTACTT CTACCAAAAT 20654
.......... .......... .......... .......... .......... .......... 196
GCAAGGACAA ACTGTCCCAA TTTTACAGTA AAATAACTAT CATTGTGAAA CAGACTGTCA 20714
.......... .......... .......... .......... .......... .......... 196
GCATCGCTCT CTAAGCTCAG TCTGTACAGC TTTTACCAAA TAAAAATAAT GCAATGGTTT 20774
.......... .......... .......... .......... .......... .......... 196
TTGGAAAGAA TAAAGGTTTT AGTGGCACAC TAATTTCCAT AATTTGACCC TTCATGTTTA 20834
.......... .......... .......... .......... .......... .......... 196
TGCTTTCAGT TCATTGGTAC TCCACATTGG ATGGCACCAG AGGTCATTCA AGAAAGTCGT 20894
| |||| ||||| |||||| ||| |||||||||| |||||||||| ||| |||||
.........T TCATCGGTAC TCCACACTGG ATGGCACCAG AGGTCATTCA AGAGAGTCGG 247
TATGATGGAA AGGTATCATG CTATCATCTC TACGGTGTTC AGCTATGGAA TTGTTCATTT 20954
| |||||| | ||
TTTGATGGGA AG........ .......... .......... .......... .......... 259
TAGCAGCTTT TGTGGATGTT GCCATTTTAC TCTAAAGACT TGGTGGCCGT AAATTTATGA 21014
.......... .......... .......... .......... .......... .......... 259
TTGGGTTTTC AGTGAACAGG ATTTCTTTAA TATTTTGTTT CTTTGGGTGT GGAATGTCCT 21074
.......... .......... .......... .......... .......... .......... 259
TGCATATGGC AGAACAAGGT TACACGTAAA TTCATAAAAG CCATTAAATA ATTGTTATGG 21134
.......... .......... .......... .......... .......... .......... 259
AACCCCTGCC AGTGCCAAAA CATGTTTATT TCTTTTCCTT GTCTCTTGAT GGTTCCTCAA 21194
.......... .......... .......... .......... .......... .......... 259
GCAAAAAAAA AATAAAATAA AATCATTACC TACTACTAAG CCTCCAAAAC AAGTCTACTG 21254
.......... .......... .......... .......... .......... .......... 259
GTTGCAATTA GGGATGAAAA CGGATCGGAT ACGGACGGAT ATCATCGATA TCATATTTGT 21314
.......... .......... .......... .......... .......... .......... 259
TTTCGTATTT CTGGTCGAAT TCGGATTCGA ATACGGATAA TGTCAACTAT ATCGGATAAG 21374
.......... .......... .......... .......... .......... .......... 259
ATACGATTGG ATGTCGACAT CATAAATATA TGATTTAAGT ACTCGGATAC GGATACGGTA 21434
.......... .......... .......... .......... .......... .......... 259
TCGGATGTAG AACATTCGAA CTCGGATACG AACTGGTCTG AATCCCTCTA AACGAATTCG 21494
.......... .......... .......... .......... .......... .......... 259
GTCTCAAATA CGGTCGGAAA ATATCCGTAC CGTTTTCATC CCTAGTTGCA ATGTTGAGAA 21554
.......... .......... .......... .......... .......... .......... 259
AATTATTTTG GCAGCTGGAA TTCTTCCTTT AGTTTGTCTT ACCAAAACAT TTGTTCTTGT 21614
.......... .......... .......... .......... .......... .......... 259
TTCCTGCACC AGGTAGATGT TTGGGCATTA GGTGTATCTG CAATTGAGAT GGCAGAGGTA 21674
|||||||| ||| || | || | ||| || | ||||| |||| ||
.......... ..GTAGATGT TTGAGCTCTT GGAGAGACTG CATTAGAGAT GGCATAG... 304
GACATTGTTC CTTGCTTCTT TCTTTTTTTG ACTGTACACT TTTGTTTTTA ATTTTGTGTC 21734
.......... .......... .......... .......... .......... .......... 304
GTGACAATGC TTTTTAATAT TTATTTTGTA TCTCTGACTG TAGGGCATGC CACCAAGATC 21794
||||||| |||| |||||
.......... .......... .......... .......... ...GGCATGC CACCGAGATC 321
CACTGTACAT CCAATGAGAG TAAGAGATGC TTCTCAATGC CTGTTAGTAT CTGCAGTTAA 21854
|||||| ||| |||||||||
CACTGTGCAT CCAATGAGA. .......... .......... .......... .......... 340
TGAGGCTAAT AGGTTATAAC AGAATTAAAA AAATCTGCTC TATCTTTGGT GCACTGTACT 21914
.......... .......... .......... .......... .......... .......... 340
TTTTATCTCT TTACTGTCAA GGGCGTCGAG GGACAGGGTA GGAGGATCCC GGCTACGTAG 21974
.......... .......... .......... .......... .......... .......... 340
TTCATAGACC AATCTGTGGT GTGGGGCGGA GGTTTTACCC CTCAGTGCCC GATTGTTTCA 22034
.......... .......... .......... .......... .......... .......... 340
GCAAAGGTAG ATTAGGGAAT TGGGATAATT GTTCTTTCTT GATTATCATC ATACGAGTAC 22094
.......... .......... .......... .......... .......... .......... 340
AAGAATATAT AGGCCATTCG GCCATAACAG CTTGGAGCCA ATTGCTCCTA AATCTAAGGC 22154
.......... .......... .......... .......... .......... .......... 340
CATTATCGGC TCTCCTGCCT TCTAGGCTCT CGCCTGTTCA GTGTGCTCTG CATGCGTGGT 22214
.......... .......... .......... .......... .......... .......... 340
GACCGCGCCT ACGGTTCTGC TGGTGCGCCA TCTGCGGCTC TGCGAGCATC CTGGGCGTGC 22274
.......... .......... .......... .......... .......... .......... 340
CGTTTCCTTG TGTAGGCGCG GTCCCACATG ACATTTACTT TCTTTCTGAT GCATTTGCTT 22334
.......... .......... .......... .......... .......... .......... 340
CTTTACTTTG CCTTGGTAAA TATTTGGTAT ACATATCAAT ATATTGTTTC ATCTTCGTTT 22394
.......... .......... .......... .......... .......... .......... 340
AGCATGAATG CTTGATAGAC CGACTAACGA TCTCTCTTCC CCCTTCCCTT ATCTCAGGTT 22454
||
.......... .......... .......... .......... .......... .......GTG 343
ATCTTCATGA TATCCAGTGA ACCAGCACCA ATGCTGGAGG ATAAGG 22500
|||||||||| |||| ||||| || ||| | |||||||||| ||||||
ATCTTCATGA TATCTAGTGA ACGTGCAACG ATGCTGGAGG ATAAGG 389
********************************************************************************
EST sequence 1 +strand (File: 11931938+)
1 TAGATTTCTT CTCACACTCT TTGCAGTTTG AAAAAATGGA TCGGGGCTCT TTCTCCCCGC
61 GAACCCGAAA TACCCGACCC AAATCCGATA TCTACTCTAC TTTCGTAATC CATAACGACG
121 ACGATGACGA CGGAGAAACC AACCGGCGGC GGAAAACCGC CAGCGCGGAA GCACAGGAAG
181 ATCCATACGC AACAATGAAG TTCAAAGACA ACGGCCACGA TGACAACGAC GATGATGAAG
241 ATGAAGATTC CTTTCTCCCT CCGCTTCTCA AACGTCTTCC CAAGGACTTC GGCGGCGGAG
301 CATCGATGGA TTACGACGAT GACGAAGATG AATCTGGTGA TTTCGGTACT ATGATCGTGA
361 AAAACGATCG GAGCCGGCAG CGAGATCGGT CTTCTTCCGG TGTGGCTTCA CCGGCGGGAT
421 TGACGTGGAA GACCGGGAAT TCTTCTCAGG TGACTGCTTT GAACGATGAG GATGATGATG
481 ACGGAGGTGG ATTTTCGACT TTTGTGATGC GGTCGACGGT GAGGAATAGC GAGAGAGAGT
541 CTGTGAGTGG AACGATGGTG CGAAGGACCG AGCGGAAATG ATGGCGGTGG TGGTTCGACG
601 ATGGAGAGAG CGATTGCGAG TGTATGCAAG GTGTGG
Predicted gene structure (within gDNA segment 16839 to 19586):
Exon 1 17513 17608 ( 96 n); cDNA 228 323 ( 96 n); score: 0.677
Intron 1 17609 18626 (1018 n); Pd: 0.000 (s: 0.66), Pa: 0.998 (s: 0)
Exon 2 18627 18643 ( 17 n); cDNA 324 340 ( 17 n); score: 0.706
Intron 2 18644 18863 ( 220 n); Pd: 0.000 (s: 0), Pa: 0.519 (s: 0)
Exon 3 18864 18887 ( 24 n); cDNA 341 362 ( 22 n); score: 0.708
MATCH 21326110+ 11931938+ 0.677 137 0.215 C
PGS_21326110+_11931938+ (17513 17608,18627 18643,18864 18887)
Alignment (genomic DNA sequence = upper lines):
GAAGACGAGG AGGAAGACCC CTCCTCGCTG CCTCCGCTTC TCCAGCGGCT CCCCAAGGAC 17572
|| || || | | || || |||| || |||||||||| || | || || |||||||||
GACGATGATG AAGATGAAGA TTCCTTTCTC CCTCCGCTTC TCAAACGTCT TCCCAAGGAC 287
TTCGGCGGCC CCTCCTTTGA CGAAGACGAG GACGCCTACT CCTCCGACCC CGACGATGCT 17632
||||||||| | | || |||| || | |
TTCGGCGGCG GAGCATCGAT GGATTACGAC GATGAC.... .......... .......... 323
TCCCTCTCCG CTACGGTGGT CTTCAAGAGC GGCGCCCCGG CCTCCGCTCG ATCTCCGTTC 17692
.......... .......... .......... .......... .......... .......... 323
CTGGATCTGC GGCGCTCCAG CCCCCGCGCT ACCGATGACG ACCCATACTC TACCTTCGTC 17752
.......... .......... .......... .......... .......... .......... 323
GTCCACTCCA CCGCACGCTC GGGGGGGACC TCCTCCAGCC CTCGAGGGTC CGCCTCAGGC 17812
.......... .......... .......... .......... .......... .......... 323
ACATTCATCC GTCGCTCCGG GGGCTCGTCC AGCCCTCACG AATCCGTCTC TGGCACATTC 17872
.......... .......... .......... .......... .......... .......... 323
ATCCGCCGGA CTAGCACCCC GTCGAGCCCC CGGGACTCGG TCTCCGGCAC ATTCATCCGC 17932
.......... .......... .......... .......... .......... .......... 323
CGACCAGGGA GCCCGTCGAG CCCCCGCGGG TCGTTCTCTG GCACCTTCAT TCGCCACACC 17992
.......... .......... .......... .......... .......... .......... 323
AGCGGGGGTT CCAGTTCCTA TGAATCTGCT TCTGGCGGCG GCGGGGGTTT CGGGTCCTCT 18052
.......... .......... .......... .......... .......... .......... 323
TTCTGGAGTC CAGCGGTGGA GCAGACAGAG GAGCTCCGGC AACCGTCGCC TCTGATGCAG 18112
.......... .......... .......... .......... .......... .......... 323
CAACAACAGC AGCAGCATTC AAGGCGGAAG CCATCAGTGA GCTCGGCGCC AGACAGTGTT 18172
.......... .......... .......... .......... .......... .......... 323
ACCAGAGAGG ATCCTTCCAC CAAGTACGAG CTGCTCCATG AGCTTGGTGC GCCTCTTGCT 18232
.......... .......... .......... .......... .......... .......... 323
CTGGAATTAT TGTTTCATTA GTTCTGTATG TCTACTTGTA GAATGGCTGA AGCTTTGAGC 18292
.......... .......... .......... .......... .......... .......... 323
TGTTTTGCGA AATGCAAAAT TCAATTGGGA ATGCAGGGAA AGGCTCATAT GGTGCAGTGT 18352
.......... .......... .......... .......... .......... .......... 323
ACAAAGCAAG GGATCTCAGA ACGCAGGAGC TTGTGGCTGT CAAGATTATC TCACTAACAG 18412
.......... .......... .......... .......... .......... .......... 323
AAGGGGTTAG TTTCTAATTT TCTATTACAA AGTTCTGTGA ATATTCTGAA AGGCCACCCG 18472
.......... .......... .......... .......... .......... .......... 323
AGACATATTT CATATTTGGC AACCATATTG CTTTTGTTGT GAGCATTTTG TTTGCATGGG 18532
.......... .......... .......... .......... .......... .......... 323
CTCAATTGTG AGAGAATCTC ATAAATGTGG TTGCTGTCTG TTTTCCGAGT CGTTGCATTT 18592
.......... .......... .......... .......... .......... .......... 323
TTCCAAAATA TAAGTATGTA TCTTTGGTTT TCAGGAAGAA GGATATGAAG ACATACGGGG 18652
||||| | || || | |
.......... .......... .......... ....GAAGAT GAATCTGGTG A......... 340
AGAAATTGAG ATGCTGCAGC AGTGTAGCCA TCCAAATGTT GTCCGCTACT TTGGAAGCTA 18712
.......... .......... .......... .......... .......... .......... 340
CCAAGGAGAG GACTACCTAT GGGTACAATC AAATAGCCTG ATAGTATCCA TTTTATTAAC 18772
.......... .......... .......... .......... .......... .......... 340
ATTAAGAAAT AACTATCATT GGGAGATTTC TCTACTTCTT GAGTCATTTA ACATGGGCTT 18832
.......... .......... .......... .......... .......... .......... 340
GATGCAAATG CGATTCTCAA CTTACAGATA GTTATGGAGT ACTGTGGTGG TGGAA 18887
|| | | || ||| || | | || ||
.......... .......... .......... .TT-TCG-GT ACTATGATCG TGAAA 362
********************************************************************************
EST sequence 3 +strand (File: 10698690+)
1 TGGATCGGGG CTCTTTCTCC CCGCGAACCC GAAATACCCG ACCCAAATCC GATATCTACT
61 CTACTTTCGT AATCCATAAC GACGACGATG ACGACGGAGA AACCAACCGG CGGCGGAAAA
121 CCGCCAGCGC GGAAGCACAG GAAGATCCAT ACGCAACAAT GAAGTTCAAA GACAACGGCC
181 ACGATGACAA CGACGATGAT GAAGATGAAG ATTCCTTTCT CCCTCCGCTT CTCAAACGTC
241 TTCCCAAGGA CTTCGGCGGC GGAGCATCGA TGGATTACGA CGATGACGAA GATGAATCTG
301 GTGATTTCGG TACTATGATC GTGAAAAACG ATCGGAGCCG GCAGCGAGAT CGGTCTTCTT
361 CCGGTGTGGC TTCACCGGCG GGATTGACGT GGAAGACCGG GAATTCTTCT CAGGTGACTG
421 CTTTGAACGA TGAGGATGAT GATGACGGAG GTGGATTTTC GACTTTTGTG ATGCGGTCGA
481 CGGTGAGGAA TAGCGAGAGA GAGTCTGTGA GTGGAACGAT GGTGCGAAGG ACGAGCGGAA
541 ATGATGGCGG TGGTGGTTCG ACGATGGAGA GAGCGATT
Predicted gene structure (within gDNA segment 17019 to 19476):
Exon 1 17513 17608 ( 96 n); cDNA 192 287 ( 96 n); score: 0.677
Intron 1 17609 18626 (1018 n); Pd: 0.000 (s: 0.66), Pa: 0.998 (s: 0)
Exon 2 18627 18643 ( 17 n); cDNA 288 304 ( 17 n); score: 0.706
Intron 2 18644 18863 ( 220 n); Pd: 0.000 (s: 0), Pa: 0.519 (s: 0)
Exon 3 18864 18887 ( 24 n); cDNA 305 326 ( 22 n); score: 0.708
MATCH 21326110+ 10698690+ 0.677 137 0.237 C
PGS_21326110+_10698690+ (17513 17608,18627 18643,18864 18887)
Alignment (genomic DNA sequence = upper lines):
GAAGACGAGG AGGAAGACCC CTCCTCGCTG CCTCCGCTTC TCCAGCGGCT CCCCAAGGAC 17572
|| || || | | || || |||| || |||||||||| || | || || |||||||||
GACGATGATG AAGATGAAGA TTCCTTTCTC CCTCCGCTTC TCAAACGTCT TCCCAAGGAC 251
TTCGGCGGCC CCTCCTTTGA CGAAGACGAG GACGCCTACT CCTCCGACCC CGACGATGCT 17632
||||||||| | | || |||| || | |
TTCGGCGGCG GAGCATCGAT GGATTACGAC GATGAC.... .......... .......... 287
TCCCTCTCCG CTACGGTGGT CTTCAAGAGC GGCGCCCCGG CCTCCGCTCG ATCTCCGTTC 17692
.......... .......... .......... .......... .......... .......... 287
CTGGATCTGC GGCGCTCCAG CCCCCGCGCT ACCGATGACG ACCCATACTC TACCTTCGTC 17752
.......... .......... .......... .......... .......... .......... 287
GTCCACTCCA CCGCACGCTC GGGGGGGACC TCCTCCAGCC CTCGAGGGTC CGCCTCAGGC 17812
.......... .......... .......... .......... .......... .......... 287
ACATTCATCC GTCGCTCCGG GGGCTCGTCC AGCCCTCACG AATCCGTCTC TGGCACATTC 17872
.......... .......... .......... .......... .......... .......... 287
ATCCGCCGGA CTAGCACCCC GTCGAGCCCC CGGGACTCGG TCTCCGGCAC ATTCATCCGC 17932
.......... .......... .......... .......... .......... .......... 287
CGACCAGGGA GCCCGTCGAG CCCCCGCGGG TCGTTCTCTG GCACCTTCAT TCGCCACACC 17992
.......... .......... .......... .......... .......... .......... 287
AGCGGGGGTT CCAGTTCCTA TGAATCTGCT TCTGGCGGCG GCGGGGGTTT CGGGTCCTCT 18052
.......... .......... .......... .......... .......... .......... 287
TTCTGGAGTC CAGCGGTGGA GCAGACAGAG GAGCTCCGGC AACCGTCGCC TCTGATGCAG 18112
.......... .......... .......... .......... .......... .......... 287
CAACAACAGC AGCAGCATTC AAGGCGGAAG CCATCAGTGA GCTCGGCGCC AGACAGTGTT 18172
.......... .......... .......... .......... .......... .......... 287
ACCAGAGAGG ATCCTTCCAC CAAGTACGAG CTGCTCCATG AGCTTGGTGC GCCTCTTGCT 18232
.......... .......... .......... .......... .......... .......... 287
CTGGAATTAT TGTTTCATTA GTTCTGTATG TCTACTTGTA GAATGGCTGA AGCTTTGAGC 18292
.......... .......... .......... .......... .......... .......... 287
TGTTTTGCGA AATGCAAAAT TCAATTGGGA ATGCAGGGAA AGGCTCATAT GGTGCAGTGT 18352
.......... .......... .......... .......... .......... .......... 287
ACAAAGCAAG GGATCTCAGA ACGCAGGAGC TTGTGGCTGT CAAGATTATC TCACTAACAG 18412
.......... .......... .......... .......... .......... .......... 287
AAGGGGTTAG TTTCTAATTT TCTATTACAA AGTTCTGTGA ATATTCTGAA AGGCCACCCG 18472
.......... .......... .......... .......... .......... .......... 287
AGACATATTT CATATTTGGC AACCATATTG CTTTTGTTGT GAGCATTTTG TTTGCATGGG 18532
.......... .......... .......... .......... .......... .......... 287
CTCAATTGTG AGAGAATCTC ATAAATGTGG TTGCTGTCTG TTTTCCGAGT CGTTGCATTT 18592
.......... .......... .......... .......... .......... .......... 287
TTCCAAAATA TAAGTATGTA TCTTTGGTTT TCAGGAAGAA GGATATGAAG ACATACGGGG 18652
||||| | || || | |
.......... .......... .......... ....GAAGAT GAATCTGGTG A......... 304
AGAAATTGAG ATGCTGCAGC AGTGTAGCCA TCCAAATGTT GTCCGCTACT TTGGAAGCTA 18712
.......... .......... .......... .......... .......... .......... 304
CCAAGGAGAG GACTACCTAT GGGTACAATC AAATAGCCTG ATAGTATCCA TTTTATTAAC 18772
.......... .......... .......... .......... .......... .......... 304
ATTAAGAAAT AACTATCATT GGGAGATTTC TCTACTTCTT GAGTCATTTA ACATGGGCTT 18832
.......... .......... .......... .......... .......... .......... 304
GATGCAAATG CGATTCTCAA CTTACAGATA GTTATGGAGT ACTGTGGTGG TGGAA 18887
|| | | || ||| || | | || ||
.......... .......... .......... .TT-TCG-GT ACTATGATCG TGAAA 326
********************************************************************************
EST sequence 6 +strand (File: 12047395+)
1 TGTAGCTGCC CAGCTGACAA GAACAATGTC AAAGCGCAAC ACGTTCATTG GTACTCCACA
61 TTGGATGGCA CCAGAGGTCA TTCAAGAAAG TCGTTATGAT GGAAAGGTAG
Predicted gene structure (within gDNA segment 18981 to 21219):
Exon 1 19281 19323 ( 43 n); cDNA 1 43 ( 43 n); score: 0.977
Intron 1 19324 20843 (1520 n); Pd: 0.770 (s: 0.98), Pa: 0.962 (s: 1.00)
Exon 2 20844 20910 ( 67 n); cDNA 44 110 ( 67 n); score: 0.985
MATCH 21326110+ 12047395+ 0.985 110 1.000 C
PGS_21326110+_12047395+ (19281 19323,20844 20910)
Alignment (genomic DNA sequence = upper lines):
TGTAGCTGCC CAGCTGACAA GAACCATGTC AAAGCGCAAC ACGGTATTCT AAACAGTGTT 19340
|||||||||| |||||||||| |||| ||||| |||||||||| |||
TGTAGCTGCC CAGCTGACAA GAACAATGTC AAAGCGCAAC ACG....... .......... 43
TGTTTTGCCA TTCAAATCCA TAGTTCAAGA AACTTCACAT CGATGTAACA AACAAAATGA 19400
.......... .......... .......... .......... .......... .......... 43
AGTGGCAGAT GAAACTTGTC CATGCCAGTT TACCATAAGC GGACCCATTT GTGCTTGTGC 19460
.......... .......... .......... .......... .......... .......... 43
ATAGTTCTTC AATGTGATGG TACTTTTATG GGAACTTGAA GCAAGTCTGT GTTGGAAAAT 19520
.......... .......... .......... .......... .......... .......... 43
GATTGCTGTG AAGTCCTAAC TGTTTCTTTA AGTGTCATAC TGCAAGTGCA TTATGGTCTA 19580
.......... .......... .......... .......... .......... .......... 43
TTAGGTTTAA AATGAAAAAT AAGAAAGTAT ATATTTGTTA TCTAGTATGC CTCGCCTAAT 19640
.......... .......... .......... .......... .......... .......... 43
TCCTTGGCAT TTCTTCCATT CTTTGAAACC CATACTGGTG GAACCTAGTT GAAGTGGTTC 19700
.......... .......... .......... .......... .......... .......... 43
CTGTACAAAT ACTCTCTGCA CTGCTTCTTC TCCCTTTCTT GTCGTGACAG CCTCTAGTCC 19760
.......... .......... .......... .......... .......... .......... 43
CCATATATCC CATTATGAAT CTGCTCACTC CCCCATTTGG CTTCTTCCTA GGCCACCACT 19820
.......... .......... .......... .......... .......... .......... 43
CAACAATTCT TCTGTTCTTG ATGACTGCGA TGCTCCATTC GATCTGGCAA ATTGCTGCCT 19880
.......... .......... .......... .......... .......... .......... 43
TGCTGGAGCT ATTCAAGAAC GTAGAGGGTT ACTGTGACAT TAGCATATCA AACCAACAGG 19940
.......... .......... .......... .......... .......... .......... 43
TCTGTTGGAA ATCATAATCA CAATGAACCT CCAAGTGGGA AATATTATCC AGGGCGTCAT 20000
.......... .......... .......... .......... .......... .......... 43
CTTACCTCCA AGTTATGGAC TCTGCTTGAC ACTAGAGGAA GAGTTAGTGC ACAGGGAGTC 20060
.......... .......... .......... .......... .......... .......... 43
CAAATCAGGT AGGATAGTTG ATAGTTCATA ATTGGCTAGA TCTAGGAGGA GGTATGTGAG 20120
.......... .......... .......... .......... .......... .......... 43
TGAGAGTTTG GAAAATCAGG GTAGAATACA AGTTCAGGTT CCCTAGGACG ATGATATAAT 20180
.......... .......... .......... .......... .......... .......... 43
GTAGTACCAT ACTACAAGAA TTGACTATGG AATTTATTAA TATCTAGCTA GAAACCAATA 20240
.......... .......... .......... .......... .......... .......... 43
TAAAAAAACA ATCTACTCCC CTTTCTACTG CTGCTGATAC TTCTACTCTT TTTTTTTTCT 20300
.......... .......... .......... .......... .......... .......... 43
CTCTTGTACA CCTTCTTGGC TGCTACACTT CTCTAGTTTC CAATCATGAC AATACATAAA 20360
.......... .......... .......... .......... .......... .......... 43
TGCTTGAGGA GCCCATAACA AATAGTTCTA CCCCACCCAC CCACACCCTT TCGTAGTAAA 20420
.......... .......... .......... .......... .......... .......... 43
GTGTGCCGAC AACAGTTGGT GCCCTCTTCT CGATGGTATC CATTGCTTTT CTGCATGCAC 20480
.......... .......... .......... .......... .......... .......... 43
ACACAAACAA ACACTTCTAA ATACACATAC TGACTTGTCG TATTGGCATG CAGTCATGCA 20540
.......... .......... .......... .......... .......... .......... 43
TTGAGACCAA ATCCATCAGG ACTGCATCCG CACAACACAA AATCTCACCA TACATGCATA 20600
.......... .......... .......... .......... .......... .......... 43
CGGTGTCTTG GATGTTTCTG TTGTTGGGGC GCTAATATGT ACTTCTACCA AAATGCAAGG 20660
.......... .......... .......... .......... .......... .......... 43
ACAAACTGTC CCAATTTTAC AGTAAAATAA CTATCATTGT GAAACAGACT GTCAGCATCG 20720
.......... .......... .......... .......... .......... .......... 43
CTCTCTAAGC TCAGTCTGTA CAGCTTTTAC CAAATAAAAA TAATGCAATG GTTTTTGGAA 20780
.......... .......... .......... .......... .......... .......... 43
AGAATAAAGG TTTTAGTGGC ACACTAATTT CCATAATTTG ACCCTTCATG TTTATGCTTT 20840
.......... .......... .......... .......... .......... .......... 43
CAGTTCATTG GTACTCCACA TTGGATGGCA CCAGAGGTCA TTCAAGAAAG TCGTTATGAT 20900
||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
...TTCATTG GTACTCCACA TTGGATGGCA CCAGAGGTCA TTCAAGAAAG TCGTTATGAT 100
GGAAAGGTAT 20910
|||||||||
GGAAAGGTAG 110
********************************************************************************
EST sequence 25 +strand (File: 27547907+)
1 GGGAGTTGTT CAAGGGTGTG CACAATCACT TCCAAAATGT TGTTCAGCAT GCCAATGCGA
61 TGGCCACGGC AATGGAGATG TTCAGGGATG CACATGATCA CTTCCAGGGT GCTGTGCAGA
121 GTGTCAGCAG CGCAGCATCA GCCATCGAAC GGTTCAAAGA CGCACATGAT CGTTTTCAGA
181 ATATCACTCA CCATGGAAGC ATGGTAGCAG CAGTGATGGA ATGTGGTACC GATCATACAC
241 AAGAGAAGAA GATGTGCGAG GAACCCCAAC AAAAGGCCAA AGTGACAGCT ATAGCTGAAA
301 TTCAAAAGCT TGGCCTTACT GGAAGCGAGG TGGTCTTCGC AGCAAGTATT TTCGCAAAGG
361 AACCAAACCA AATGGAGATG TTTTTAGCAC TCCCAGAAAT CTATAAGAGG GACTACATAG
421 TCCAAATGCT CAACGGTGGG CAATCTCTCC GGTATTAGCT GAAGCTAGGG ATGAAAACGG
481 ATCGGAAACG GACGGAAACT AGCTTTATCA TATTCGTTTT CATTTTTTTT TCGGGAATCG
541 GAATCGAAAA CTCGGATACG GAAATAAAAT CGAATATTAT CGAATACAGA TACAGAGCGA
601 ATACGAGACG GAACGAATAC AGTTAGCGAA TATTTACCGG GTNTATAAAA AAACCCCCTC
661 AAATTGAGTT TCTTGATTCA AGGAANAAGA TATCNCTTTA TTATTTTTAG TTCAACATCC
721 TCCAACANTT TATATTCGGC CAATTTTTGG AAGACTTGGC TCACAAACCG NATTGGGAAA
781 ANACGATTTT TNATGGGTTG GTTCCTCTTA AAAGATTCCC TNTTGCCAAA TTTGGGTTTT
841 TCCAAAAAAA AAAAAAAAAA NAAACCGGCC CCCCCNCCGG
Predicted gene structure (within gDNA segment 18638 to 22500):
Exon 1 21266 21345 ( 80 n); cDNA 469 548 ( 80 n); score: 0.775
Intron 1 21346 21413 ( 68 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0)
Exon 2 21414 21440 ( 27 n); cDNA 549 575 ( 27 n); score: 0.741
Intron 2 21441 21645 ( 205 n); Pd: 0.000 (s: 0), Pa: 0.848 (s: 0)
Exon 3 21646 21671 ( 26 n); cDNA 576 597 ( 22 n); score: 0.692
PPA cDNA 844 864
MATCH 21326110+ 27547907+ 0.775 133 0.151 C
PGS_21326110+_27547907+ (21266 21345,21414 21440,21646 21671)
Alignment (genomic DNA sequence = upper lines):
GGATGAAAAC GGATCGGATA CGGACGGATA TCATCGATAT CATATTTGTT TTCGTATTTC 21325
|||||||||| |||||||| | |||||||| | | | ||| |||||| ||| ||| | |||
GGATGAAAAC GGATCGGAAA CGGACGGAAA CTAGCTTTAT CATATTCGTT TTCATTTTTT 528
TGGTCGAATT CGGATTCGAA TACGGATAAT GTCAACTATA TCGGATAAGA TACGATTGGA 21385
| | | | |||| |||||
TTTCGGGAAT CGGAATCGAA .......... .......... .......... .......... 548
TGTCGACATC ATAAATATAT GATTTAAGTA CTCGGATACG GATACGGTAT CGGATGTAGA 21445
| |||||||||| || | || || ||
.......... .......... ........AA CTCGGATACG GAAATAAAAT CGAAT..... 575
ACATTCGAAC TCGGATACGA ACTGGTCTGA ATCCCTCTAA ACGAATTCGG TCTCAAATAC 21505
.......... .......... .......... .......... .......... .......... 575
GGTCGGAAAA TATCCGTACC GTTTTCATCC CTAGTTGCAA TGTTGAGAAA ATTATTTTGG 21565
.......... .......... .......... .......... .......... .......... 575
CAGCTGGAAT TCTTCCTTTA GTTTGTCTTA CCAAAACATT TGTTCTTGTT TCCTGCACCA 21625
.......... .......... .......... .......... .......... .......... 575
GGTAGATGTT TGGGCATTAG GTGTATCTGC AATTGAGATG GCAGAG 21671
| |||| | ||| |||| |||||
.......... .......... AT-TATC-G- AATACAGAT- ACAGAG 597
********************************************************************************
EST sequence 140 -strand (File: 11409274-)
1 AGATGTTGAA TATTCGGACT CGAATACGGA CAGATCTAAA TCCCTCTAAA CGAATTCCCT
61 CTAAACGAAT TCGGTCTCGA ATATGGTCGG AAAATATCCG TACCGTTTTC ATCCCTACTT
121 TTGTGTTATA GAGAGAAAGA GATAGCCTCA ACTTCCAGCA TAGCACAAGC CCATCTTACA
181 TCCAAAGCAA ACCACCCAGC CACCCAGGTC CTACTCAGCA AAACCACATC TGATGCTTTC
241 GTCGATGCTA GGCATTTTCC CCTAGTGGCC TCCGTCCGCT AGACCCATTC CATCGTCCGC
301 GCCTTTACCT CCACAGGACC TTGCAACCGA CTCAAAAAGC TTCTCTATCT CAGGAGCACA
361 GTGTGTAAAG GATCGAGTCC AGAAGCTGTA GCGTGGGTTC TTTATAAGCT CAATGAAAGT
421 AATGAGTAAT CCCCAAGGAT GCGGCCGATT GACAATTAAC CTTTCCAGAA GAACCCTTGT
481 TATCTGCTCT TGGACAATTT CCTGTGTTGC CTCAGCAAAC AAGTACAGAA TGATGAAGGA
541 AAAGTAGTGG GTATGGCTAT TTGGATAGCG AAGCTGGTTA GCAATCGCAT TGAGAATAAG
601 GTAGCGACCT TCTGTGTCCA TAGTCATTAC AAGGTTTCTG AACATCTCAG TAGCTGTTTC
661 AATTTGGGAA TAT
Predicted gene structure (within gDNA segment 20873 to 22500):
Exon 1 21477 21538 ( 62 n); cDNA 56 117 ( 62 n); score: 0.968
Intron 1 21539 21645 ( 107 n); Pd: 0.000 (s: 0.96), Pa: 0.848 (s: 0)
Exon 2 21646 21671 ( 26 n); cDNA 118 141 ( 24 n); score: 0.615
Intron 2 21672 21761 ( 90 n); Pd: 0.992 (s: 0), Pa: 0.000 (s: 0.60)
Exon 3 21762 21813 ( 52 n); cDNA 142 190 ( 49 n); score: 0.596
MATCH 21326110+ 11409274- 0.798 140 0.208 C
PGS_21326110+_11409274- (21477 21538,21646 21671,21762 21813)
Alignment (genomic DNA sequence = upper lines):
TCCCTCTAAA CGAATTCGGT CTCAAATACG GTCGGAAAAT ATCCGTACCG TTTTCATCCC 21536
|||||||||| |||||||||| ||| |||| | |||||||||| |||||||||| ||||||||||
TCCCTCTAAA CGAATTCGGT CTCGAATATG GTCGGAAAAT ATCCGTACCG TTTTCATCCC 115
TAGTTGCAAT GTTGAGAAAA TTATTTTGGC AGCTGGAATT CTTCCTTTAG TTTGTCTTAC 21596
||
TA........ .......... .......... .......... .......... .......... 117
CAAAACATTT GTTCTTGTTT CCTGCACCAG GTAGATGTTT GGGCATTAGG TGTATCTGCA 21656
| | | ||
.......... .......... .......... .......... .........C T-TTTGTGTT 127
ATTGAGATGG CAGAGGTAGA CATTGTTCCT TGCTTCTTTC TTTTTTTGAC TGTACACTTT 21716
|| |||| | ||||
ATAGAGA-GA AAGAG..... .......... .......... .......... .......... 141
TGTTTTTAAT TTTGTGTCGT GACAATGCTT TTTAATATTT ATTTTGTATC TCTGACTGTA 21776
|| | || | |
.......... .......... .......... .......... .....ATAGC -CTCAACTTC 155
GGGCATGCCA CCAAGATCCA CTGTACATCC AATGAGA 21813
|||| || |||| ||| ||||||| || | |
CAGCATAGCA -CAAG-CCCA TCTTACATCC AAAGCAA 190
********************************************************************************
EST sequence 46 +strand (File: 13239349+)
1 GCACGAGGAG TTTGAGTTTT GGAGAGTGGC GCCAATGGAA GTTTGAGTTT TGAAATTTGG
61 ATGCTAATTT TTTGTTGAAA GTCATCTGTA GGGCTTGTAG AAATAAGCGC GGGAAAGAAT
121 AGTGGGAGCG CGCGAGGAGA CGAGCGGCCG TACCAGACGC GCGAGGAGAC CAGCGTAGGG
181 CTTGTAGAAA TAAGCGCGGG AAAGAATAGT GGGAGCGCGC GAGGAGACGA GCGGCCGTAC
241 CAGACGCGCG AGGAGACCAG CGACCACGGA GATTTAGCGG CGTTGGTTAA GTTTACCGCC
301 TCATTACTCT TGGAACAGCG ATTTAATGAA AAAGGCCATG GGCCTACGTT GCTCCTTGGT
361 CTCTGGGCTG AGGGTTTAGA TGAGGGAGAC TGATGGACGG AGAGAGTAAT ATCTATATGC
421 CCTAAGAAAA AACACGCCCT ATGAGTAGAG ATAAAAACAG ATGGAATACG GACGGATATT
481 ATCGATATCA TATTTGTTTT TATATTTCTG GTTGAATTCA AATTCGAATA CAGATAATGT
541 TAACCACGTT GGATAAGATA CGATTGAATA TCAACATCAT AAATATACG
Predicted gene structure (within gDNA segment 18658 to 21719):
Exon 1 21266 21406 ( 141 n); cDNA 449 589 ( 141 n); score: 0.851
MATCH 21326110+ 13239349+ 0.851 141 0.239 C
PGS_21326110+_13239349+ (21266 21406)
Alignment (genomic DNA sequence = upper lines):
GGATGAAAAC GGATCGGATA CGGACGGATA TCATCGATAT CATATTTGTT TTCGTATTTC 21325
||| ||||| ||| | ||| |||||||||| | |||||||| |||||||||| || ||||||
AGATAAAAAC AGATGGAATA CGGACGGATA TTATCGATAT CATATTTGTT TTTATATTTC 508
TGGTCGAATT CGGATTCGAA TACGGATAAT GTCAACTATA TCGGATAAGA TACGATTGGA 21385
|||| ||||| | ||||||| ||| |||||| || ||| | | |||||||| |||||||| |
TGGTTGAATT CAAATTCGAA TACAGATAAT GTTAACCACG TTGGATAAGA TACGATTGAA 568
TGTCGACATC ATAAATATAT G 21406
| || ||||| ||||||||| |
TATCAACATC ATAAATATAC G 589
********************************************************************************
EST sequence 126 -strand (File: 7217281-)
1 ACGAACGGAT ATCATTGATA TAATATTTGT TTTTATATTT CTAGTCGGAT TCGGATTCGA
61 ATACGGATAA TGTCAACCAT ATCGGATAAG ATATGATTTG ATGTCGACAT CATAAATATA
121 CGATTTAAGT ATTCGGATAC GGTATGTTGA ATATTCGGAC TCGGATACGG ACAGATCTGA
181 ACCCCTCTAA ACGAATTCGG TCTCAAATAC GGTCGGAAAA TATCCGTACC GTTTTCATCC
241 TTACCCAGCG CTTTCAAATT CAATGACGAG CCGTCGCCTC TCGACGGCTG GGAACTGGGA
301 AGTAGTCCAG GACGGAGTAC TCGTGCTCAG GAGTCAGGAC GCACTGCGAG CCACCCGGCC
361 ATCGCGAGAG ACGCGCGCAG GACAACTTCG CGGTCCTGGT GCACGCCAGG GCCCCCGTTG
421 GGTTGGGCCC GCCGAGGCGT CGGAGCGCGC ACCACTTGAT CTCGTCACGG TACTCGACGT
481 CAGCGGAAGC ATGTCTGGCC ACAAACTGGT CCTCCTGAAG CAGGCCATGG ACTGATGGAC
541 TTCGTCATCG ACCACTTTGG CCCCAGCGAC CGGCTCAGCA TCGTCTCCTT CACATTGGCA
601 ACCAAAACCA AAATAGATCT CCAACATAAT ACCTATAATC TCCAACAAAG AGCATCTGAC
661 ACCCATTTTA AGTATCAAGA GAGATATAGC CTAAAT
Predicted gene structure (within gDNA segment 20788 to 22500):
Exon 1 21285 21538 ( 254 n); cDNA 1 243 ( 243 n); score: 0.886
MATCH 21326110+ 7217281- 0.886 254 0.365 C
PGS_21326110+_7217281- (21285 21538)
Alignment (genomic DNA sequence = upper lines):
ACGGACGGAT ATCATCGATA TCATATTTGT TTTCGTATTT CTGGTCGAAT TCGGATTCGA 21344
||| |||||| ||||| |||| | |||||||| ||| ||||| || |||| || ||||||||||
ACGAACGGAT ATCATTGATA TAATATTTGT TTTTATATTT CTAGTCGGAT TCGGATTCGA 60
ATACGGATAA TGTCAACTAT ATCGGATAAG ATACGATTGG ATGTCGACAT CATAAATATA 21404
|||||||||| ||||||| || |||||||||| ||| |||| | |||||||||| ||||||||||
ATACGGATAA TGTCAACCAT ATCGGATAAG ATATGATTTG ATGTCGACAT CATAAATATA 120
TGATTTAAGT ACTCGGATAC GGATACGGTA TCGGATGTAG AACATTCGAA CTCGGATACG 21464
||||||||| | | | | |||||||||| | | | | | || ||||| | ||||||||||
CGATTTAAGT A-T----T-C GGATACGGTA T--G-T-T-G AATATTCGGA CTCGGATACG 169
AACTGGTCTG AATCCCTCTA AACGAATTCG GTCTCAAATA CGGTCGGAAA ATATCCGTAC 21524
|| | |||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACAGATCTG AACCCCTCTA AACGAATTCG GTCTCAAATA CGGTCGGAAA ATATCCGTAC 229
CGTTTTCATC CCTA 21538
|||||||||| | ||
CGTTTTCATC CTTA 243
********************************************************************************
EST sequence 125 -strand (File: 9299315-)
1 ATATGATTGG ATGTCGACAT CATAAATATA CGATTTAAAT ATTCGGATAC GGATACAGTT
61 TCGGATGTTA AATATTCGGA CTCGGATACG GACAAATCTG AACCCCTCTA AACGAATTTG
121 GTCTCGAATA CGGTCGGAAA ATATCTGTAA CGTTTTCATC CCCGCGTGTG AGCGGGGCAA
181 GAAGCTGTGC AGCGTGCGTC CTAGAAAAGT TGCGTGTCAT CATTTTCACC AACCAGCAAG
241 CGAGGTTCGT CCCCGGAACC GCCGACCTCG ATGCCTACGC AGAAGTGCGG GCCCGCCGCG
301 GACAGCACCA CGGCACGCAT CGGCAGTGAA GAACCTACAG ATCTGCTTGC ACCAGGACGG
361 ATTCTGCTCG ACGCTGAACT AGTAGGTGTG GAGTCCATGG TTGGAGATGA GATTTGAGAA
421 GAATGGGTGA GGATCAACAG AAGAGACAGG GAAGAAGAAG AAGAAGAAGA GTACAAAGTT
481 TTATATAAAA TGTGAGTGTT GTTTCGATAG ATTTAATCAA ATTTAAATTT GTTTGAATTC
541 TTGGAAAATG CAAATTGCAT TCTTTCATAG TAGTATTCGC TAATCATAAA CCACATTGTG
601 TCTTTGTTTC GTCTTAATTA TATTCCTCGT GC
Predicted gene structure (within gDNA segment 21054 to 22500):
Exon 1 21375 21535 ( 161 n); cDNA 1 161 ( 161 n); score: 0.882
Intron 1 21536 22289 ( 754 n); Pd: 0.000 (s: 0.92), Pa: 0.414 (s: 0)
Exon 2 22290 22294 ( 5 n); cDNA 162 166 ( 5 n); score: 0.800
MATCH 21326110+ 9299315- 0.882 166 0.263 C
PGS_21326110+_9299315- (21375 21535,22290 22294)
Alignment (genomic DNA sequence = upper lines):
ATACGATTGG ATGTCGACAT CATAAATATA TGATTTAAGT ACTCGGATAC GGATACGGTA 21434
||| |||||| |||||||||| |||||||||| ||||||| | | |||||||| |||||| ||
ATATGATTGG ATGTCGACAT CATAAATATA CGATTTAAAT ATTCGGATAC GGATACAGTT 60
TCGGATGTAG AACATTCGAA CTCGGATACG AACTGGTCTG AATCCCTCTA AACGAATTCG 21494
|||||||| || ||||| | |||||||||| || |||| || ||||||| |||||||| |
TCGGATGTTA AATATTCGGA CTCGGATACG GACAAATCTG AACCCCTCTA AACGAATTTG 120
GTCTCAAATA CGGTCGGAAA ATATCCGTAC CGTTTTCATC CCTAGTTGCA ATGTTGAGAA 21554
||||| |||| |||||||||| ||||| ||| |||||||||| |
GTCTCGAATA CGGTCGGAAA ATATCTGTAA CGTTTTCATC C......... .......... 161
AATTATTTTG GCAGCTGGAA TTCTTCCTTT AGTTTGTCTT ACCAAAACAT TTGTTCTTGT 21614
.......... .......... .......... .......... .......... .......... 161
TTCCTGCACC AGGTAGATGT TTGGGCATTA GGTGTATCTG CAATTGAGAT GGCAGAGGTA 21674
.......... .......... .......... .......... .......... .......... 161
GACATTGTTC CTTGCTTCTT TCTTTTTTTG ACTGTACACT TTTGTTTTTA ATTTTGTGTC 21734
.......... .......... .......... .......... .......... .......... 161
GTGACAATGC TTTTTAATAT TTATTTTGTA TCTCTGACTG TAGGGCATGC CACCAAGATC 21794
.......... .......... .......... .......... .......... .......... 161
CACTGTACAT CCAATGAGAG TAAGAGATGC TTCTCAATGC CTGTTAGTAT CTGCAGTTAA 21854
.......... .......... .......... .......... .......... .......... 161
TGAGGCTAAT AGGTTATAAC AGAATTAAAA AAATCTGCTC TATCTTTGGT GCACTGTACT 21914
.......... .......... .......... .......... .......... .......... 161
TTTTATCTCT TTACTGTCAA GGGCGTCGAG GGACAGGGTA GGAGGATCCC GGCTACGTAG 21974
.......... .......... .......... .......... .......... .......... 161
TTCATAGACC AATCTGTGGT GTGGGGCGGA GGTTTTACCC CTCAGTGCCC GATTGTTTCA 22034
.......... .......... .......... .......... .......... .......... 161
GCAAAGGTAG ATTAGGGAAT TGGGATAATT GTTCTTTCTT GATTATCATC ATACGAGTAC 22094
.......... .......... .......... .......... .......... .......... 161
AAGAATATAT AGGCCATTCG GCCATAACAG CTTGGAGCCA ATTGCTCCTA AATCTAAGGC 22154
.......... .......... .......... .......... .......... .......... 161
CATTATCGGC TCTCCTGCCT TCTAGGCTCT CGCCTGTTCA GTGTGCTCTG CATGCGTGGT 22214
.......... .......... .......... .......... .......... .......... 161
GACCGCGCCT ACGGTTCTGC TGGTGCGCCA TCTGCGGCTC TGCGAGCATC CTGGGCGTGC 22274
.......... .......... .......... .......... .......... .......... 161
CGTTTCCTTG TGTAGGCGCG 22294
||||
.......... .....CCGCG 166
Total number of EST alignments reported: 131
________________________________________________________________________________
Predicted gene locations (4):
PGL 1 (+ strand): 7879 11738
AGS-1 (7879 8058,8339 8720,8849 9045,9698 9839,10516 10669,11330 11738)
SCR (e 0.950 d 0.338 a 0.581,e 0.956 d 0.857 a 0.962,e 0.883 d 0.980 a 0.977,e 0.831 d 0.994 a 1.000,e 0.968 d 0.961 a 0.992,e 0.800)
Exon 1 7879 8058 ( 180 n); score: 0.950
Intron 1 8059 8338 ( 280 n); Pd: 0.338 Pa: 0.581
Exon 2 8339 8720 ( 382 n); score: 0.956
Intron 2 8721 8848 ( 128 n); Pd: 0.857 Pa: 0.962
Exon 3 8849 9045 ( 197 n); score: 0.883
Intron 3 9046 9697 ( 652 n); Pd: 0.980 Pa: 0.977
Exon 4 9698 9839 ( 142 n); score: 0.831
Intron 4 9840 10515 ( 676 n); Pd: 0.994 Pa: 1.000
Exon 5 10516 10669 ( 154 n); score: 0.968
Intron 5 10670 11329 ( 660 n); Pd: 0.961 Pa: 0.992
Exon 6 11330 11738 ( 409 n); score: 0.800
PGS (7879 8058,8339 8700) 13557989+
PGS (7879 8058,8339 8612) 6626513+
PGS (7984 8058,8339 8720,8849 8913) 14528354+
PGS (7984 8058,8339 8720,8849 8895) 25548034+
PGS (7984 8058,8339 8633) 11549557+
PGS (7984 8058,8339 8610) 11116044+
PGS (7984 8058,8339 8565) 21975880+
PGS (7984 8058,8339 8554) 21973454+
PGS (7984 8058,8339 8534) 16314143+
PGS (7988 8058,8339 8664) 13082841+
PGS (8339 8720,8849 9045) 13778583+
PGS (8339 8720,8849 8952) 11908994+
PGS (8459 8720,8849 9029) 16312083+
PGS (8487 8720,8849 9045) 11207020+
PGS (8487 8720,8849 9045) 11206955+
PGS (8487 8720,8849 9045) 18100417+
PGS (8522 8720,8849 9045,9698 9839,10516 10669) 27547342+
PGS (8663 8720,8849 9045,9698 9839,10516 10669) 10093099-
PGS (9708 9839,10516 10669) 14528874-
PGS (9738 9839,10516 10669,11330 11738) 24768712-
PGS (10516 10669,11330 11738) 5058681-
PGS (10516 10669,11330 11355) 4381116+
PGS (10638 10669) 15853351+
PGS (11475 11738) 4730326-
PGS (11503 11630) 13557988-
3-phase translation of AGS-1 (+strand):
. . . . . .
7879 CCCGCCCGCCCGCCATTCTTGCCGAATCGAGTCCACGCCACGCCTCCTGCGCCCCCTTCG
P A R P P F L P N R V H A T P P A P P S
P P A R H S C R I E S T P R L L R P L R
R P P A I L A E S S P R H A S C A P F
. . . . . .
7939 GTTCTCACCTCGGGAGTCGCGGATTGGTGGAGGGGAGGATTTGAGCGGCGCGGCCATGGA
V L T S G V A D W W R G G F E R R G H G
F S P R E S R I G G G E D L S G A A M D
G S H L G S R G L V E G R I - A A R P W
. . . . . . :
7999 TACAACCTCTAGGGCCGCCAAGATCCCGTCGCTCCACCAGACGGAGATCAACTGGGACAA :
Y N L - G R Q D P V A P P D G D Q L G Q :
T T S R A A K I P S L H Q T E I N W D N :
I Q P L G P P R S R R S T R R R S T G T :
. . . . . .
8339 CCTCGACAAGACCAAGCTCTACGTGGTGGGCGCAGGCATGTTCAGCGGCGTCACCGTGGC
P R Q D Q A L R G G R R H V Q R R H R G
L D K T K L Y V V G A G M F S G V T V A
T S T R P S S T W W A Q A C S A A S P W
. . . . . .
8399 GCTGTATCCTGTCTCGGTGGTCAAGACCCGGATGCAGGTTGCCTCTGGGGACGCCATGAG
A V S C L G G Q D P D A G C L W G R H E
L Y P V S V V K T R M Q V A S G D A M R
R C I L S R W S R P G C R L P L G T P -
. . . . . .
8459 GAGGAACGCGCTGGCTACCTTCAAGAACATCCTCAAGATGGACGGCGTGCCAGGGCTGTA
E E R A G Y L Q E H P Q D G R R A R A V
R N A L A T F K N I L K M D G V P G L Y
G G T R W L P S R T S S R W T A C Q G C
. . . . . .
8519 CCGGGGGTTTGCTACCGTTATCATTGGGGCTGTACCAACTAGGATCATCTTCCTCACAGC
P G V C Y R Y H W G C T N - D H L P H S
R G F A T V I I G A V P T R I I F L T A
T G G L L P L S L G L Y Q L G S S S S Q
. . . . . .
8579 GCTTGAGACAACCAAAGCAGCCTCGCTTAAGCTTGTTGAGCCCTTCAAGCTGTCAGAGCC
A - D N Q S S L A - A C - A L Q A V R A
L E T T K A A S L K L V E P F K L S E P
R L R Q P K Q P R L S L L S P S S C Q S
. . . . . .
8639 GGTGCGGGCTGCCTTTGCCAATGGCCTTGCTGGTCTGTCAGCGTCTACATGTTCGCAGGC
G A G C L C Q W P C W S V S V Y M F A G
V R A A F A N G L A G L S A S T C S Q A
R C G L P L P M A L L V C Q R L H V R R
. . . : . . .
8699 TATTTTTGTTCCAATTGATGTG : ATTAGCCAGAAATTGATGGTTCAAGGATATTCTGGTAA
Y F C S N - C : D - P E I D G S R I F W -
I F V P I D V : I S Q K L M V Q G Y S G N
L F L F Q L M - : L A R N - W F K D I L V
. . . . . .
8887 TGCCAGATACAAAGGTGGATTAGATGTTGCTCGAAAGGTCATAAAGGCTGATGGCATTAG
C Q I Q R W I R C C S K G H K G - W H -
A R Y K G G L D V A R K V I K A D G I R
M P D T K V D - M L L E R S - R L M A L
. . . . . .
8947 GGGGCTGTACAGAGGATTTGGACTGTCTGTTATGACCTATGCTCCATCCAGTGCTGTGTG
G A V Q R I W T V C Y D L C S I Q C C V
G L Y R G F G L S V M T Y A P S S A V W
G G C T E D L D C L L - P M L H P V L C
. . . . : . .
9007 GTGGGCAAGTTATGGTTCCAGCCAGCGCATAATTTGGAG : TGCTCTTGGCCATTTGCATGA
V G K L W F Q P A H N L E : C S W P F A -
W A S Y G S S Q R I I W S : A L G H L H D
G G Q V M V P A S A - F G : V L L A I C M
. . . . . .
9719 CAAAGAAGAGGCTCCTAGCCAATTGAAACTAGTTGGTGTTCAAGCATCAGGGGGGGTTTT
Q R R G S - P I E T S W C S S I R G G F
K E E A P S Q L K L V G V Q A S G G V F
T K K R L L A N - N - L V F K H Q G G F
. . . . . .
9779 TGCCGGTGCCGTGACCTCTTTTGTTACGACTCCCATAGATACAATAAAGACCAGGCTGCA
C R C R D L F C Y D S H R Y N K D Q A A
A G A V T S F V T T P I D T I K T R L Q
L P V P - P L L L R L P - I Q - R P G C
. : . . . . .
9839 G : GTTATGGATAATGAAAATAAGCCAAAAGCCAGGGAAGTTGTCAAAAGATTGATTGCTGA
: G Y G - - K - A K S Q G S C Q K I D C -
: V M D N E N K P K A R E V V K R L I A E
R : L W I M K I S Q K P G K L S K D - L L
. . . . . .
10575 AGATGGATGGAAAGGTTTGTACAGAGGGTTGGGTCCAAGATTTTTCAGCTCATCAGCTTG
R W M E R F V Q R V G S K I F Q L I S L
D G W K G L Y R G L G P R F F S S S A W
K M D G K V C T E G W V Q D F S A H Q L
. . . . : . .
10635 GGGAACCTCAATGATAGTATGCTACGAGTACCTGA : AGCGCTTGTGTGCTAAAGTTGAAGA
G N L N D S M L R V P E : A L V C - S - R
G T S M I V C Y E Y L : K R L C A K V E E
G E P Q - - Y A T S T - : S A C V L K L K
. . . . . .
11355 GGTCTGATTTCTGAGCTGCCTTAAACTCAGAACGCAATTCCTACAATTCTGGAAGTTTTG
G L I S E L P - T Q N A I P T I L E V L
V - F L S C L K L R T Q F L Q F W K F C
R S D F - A A L N S E R N S Y N S G S F
. . . . . .
11415 TATTAGCAGAAGTGTAATAATGCTGTACACCAACGGAAGCTTCAGTTCTTGCTGACATAG
Y - Q K C N N A V H Q R K L Q F L L T -
I S R S V I M L Y T N G S F S S C - H R
V L A E V - - C C T P T E A S V L A D I
. . . . . .
11475 GTGAAAGTATTAAACATGGATGTTTGATGGTGTTAAAGACGTCATTTGATGCTAGACAAT
V K V L N M D V - W C - R R H L M L D N
- K Y - T W M F D G V K D V I - C - T I
G E S I K H G C L M V L K T S F D A R Q
. . . . . .
11535 AGTCCTTACAAACTTTGGTTCTCTGAGCAGAGTATTCTCAAAAAAATGCAGGGGCCTATA
S P Y K L W F S E Q S I L K K M Q G P I
V L T N F G S L S R V F S K K C R G L Y
- S L Q T L V L - A E Y S Q K N A G A Y
. . . . . .
11595 TTTTTTTTTGCCTCTTATGCTGAATATGGATTAGGCTGATCATTTTAGATGAATATAAAC
F F F A S Y A E Y G L G - S F - M N I N
F F L P L M L N M D - A D H F R - I - T
I F F C L L C - I W I R L I I L D E Y K
. . . . . .
11655 GAGATCAGATGTACACATTTATCATTCTTTTATACGTGAAGGCTTGTTTTAGCGAGGCTG
E I R C T H L S F F Y T - R L V L A R L
R S D V H I Y H S F I R E G L F - R G W
R D Q M Y T F I I L L Y V K A C F S E A
. . .
11715 GATGATTGAGACCAGTTGTAATGA
D D - D Q L - -
M I E T S C N
G - L R P V V M
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-1_AGS-1_PPS_1 (7880 8058,8339 8720,8849 9045,9698 9839,10516 10669,11330 11361) (frame '2'; 1083 bp, 361 residues)
1 PPARHSCRIE STPRLLRPLR FSPRESRIGG GEDLSGAAMD TTSRAAKIPS LHQTEINWDN
61 LDKTKLYVVG AGMFSGVTVA LYPVSVVKTR MQVASGDAMR RNALATFKNI LKMDGVPGLY
121 RGFATVIIGA VPTRIIFLTA LETTKAASLK LVEPFKLSEP VRAAFANGLA GLSASTCSQA
181 IFVPIDVISQ KLMVQGYSGN ARYKGGLDVA RKVIKADGIR GLYRGFGLSV MTYAPSSAVW
241 WASYGSSQRI IWSALGHLHD KEEAPSQLKL VGVQASGGVF AGAVTSFVTT PIDTIKTRLQ
301 VMDNENKPKA REVVKRLIAE DGWKGLYRGL GPRFFSSSAW GTSMIVCYEY LKRLCAKVEE
361 V-
NCBI Blastp
AGS-2 (8598 8720,8849 9045,9438 9477,9729 9839,10516 10669,11330 11355)
SCR (e 0.699 d 0.857 a 0.962,e 0.772 d 0.980 a 0.936,e 0.450 d 0.869 a 0.000,e 0.667 d 0.994 a 1.000,e 0.708 d 0.961 a 0.992,e 0.731)
Exon 1 8598 8720 ( 123 n); score: 0.699
Intron 1 8721 8848 ( 128 n); Pd: 0.857 Pa: 0.962
Exon 2 8849 9045 ( 197 n); score: 0.772
Intron 2 9046 9437 ( 392 n); Pd: 0.980 Pa: 0.936
Exon 3 9438 9477 ( 40 n); score: 0.450
Intron 3 9478 9728 ( 251 n); Pd: 0.869 Pa: 0.000
Exon 4 9729 9839 ( 111 n); score: 0.667
Intron 4 9840 10515 ( 676 n); Pd: 0.994 Pa: 1.000
Exon 5 10516 10669 ( 154 n); score: 0.708
Intron 5 10670 11329 ( 660 n); Pd: 0.961 Pa: 0.992
Exon 6 11330 11355 ( 26 n); score: 0.731
PGS (8598 8720,8849 9045,9438 9477,9729 9839,10516 10669) 17074557+
PGS (8878 9045,9438 9477,9729 9839,10516 10669,11330 11355) 18260535+
3-phase translation of AGS-2 (+strand):
. . . . . .
8598 GCCTCGCTTAAGCTTGTTGAGCCCTTCAAGCTGTCAGAGCCGGTGCGGGCTGCCTTTGCC
A S L K L V E P F K L S E P V R A A F A
P R L S L L S P S S C Q S R C G L P L P
L A - A C - A L Q A V R A G A G C L C
. . . . . .
8658 AATGGCCTTGCTGGTCTGTCAGCGTCTACATGTTCGCAGGCTATTTTTGTTCCAATTGAT
N G L A G L S A S T C S Q A I F V P I D
M A L L V C Q R L H V R R L F L F Q L M
Q W P C W S V S V Y M F A G Y F C S N -
. : . . . . .
8718 GTG : ATTAGCCAGAAATTGATGGTTCAAGGATATTCTGGTAATGCCAGATACAAAGGTGGA
V : I S Q K L M V Q G Y S G N A R Y K G G
- : L A R N - W F K D I L V M P D T K V D
C : D - P E I D G S R I F W - C Q I Q R W
. . . . . .
8906 TTAGATGTTGCTCGAAAGGTCATAAAGGCTGATGGCATTAGGGGGCTGTACAGAGGATTT
L D V A R K V I K A D G I R G L Y R G F
- M L L E R S - R L M A L G G C T E D L
I R C C S K G H K G - W H - G A V Q R I
. . . . . .
8966 GGACTGTCTGTTATGACCTATGCTCCATCCAGTGCTGTGTGGTGGGCAAGTTATGGTTCC
G L S V M T Y A P S S A V W W A S Y G S
D C L L - P M L H P V L C G G Q V M V P
W T V C Y D L C S I Q C C V V G K L W F
. . : . . . . :
9026 AGCCAGCGCATAATTTGGAG : CTTAGAGAACTTAATTACCAACCTGAAACAATGTGATGAA :
S Q R I I W S : L E N L I T N L K Q C D E :
A S A - F G : A - R T - L P T - N N V M K :
Q P A H N L E : L R E L N Y Q P E T M - - :
. . . . . .
9729 GCTCCTAGCCAATTGAAACTAGTTGGTGTTCAAGCATCAGGGGGGGTTTTTGCCGGTGCC
A P S Q L K L V G V Q A S G G V F A G A
L L A N - N - L V F K H Q G G F L P V P
S S - P I E T S W C S S I R G G F C R C
. . . . . . :
9789 GTGACCTCTTTTGTTACGACTCCCATAGATACAATAAAGACCAGGCTGCAG : GTTATGGAT
V T S F V T T P I D T I K T R L Q : V M D
- P L L L R L P - I Q - R P G C R : L W I
R D L F C Y D S H R Y N K D Q A A : G Y G
. . . . . .
10525 AATGAAAATAAGCCAAAAGCCAGGGAAGTTGTCAAAAGATTGATTGCTGAAGATGGATGG
N E N K P K A R E V V K R L I A E D G W
M K I S Q K P G K L S K D - L L K M D G
- - K - A K S Q G S C Q K I D C - R W M
. . . . . .
10585 AAAGGTTTGTACAGAGGGTTGGGTCCAAGATTTTTCAGCTCATCAGCTTGGGGAACCTCA
K G L Y R G L G P R F F S S S A W G T S
K V C T E G W V Q D F S A H Q L G E P Q
E R F V Q R V G S K I F Q L I S L G N L
. . . : . . .
10645 ATGATAGTATGCTACGAGTACCTGA : AGCGCTTGTGTGCTAAAGTTGAAGAG
M I V C Y E Y L : K R L C A K V E E
- - Y A T S T - : S A C V L K L K
N D S M L R V P E : A L V C - S - R
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-1_AGS-2_PPS_1 (8598 8720,8849 9045,9438 9477,9729 9839,10516 10669,11330 11355) (frame '1'; 651 bp, 217 residues)
1 ASLKLVEPFK LSEPVRAAFA NGLAGLSAST CSQAIFVPID VISQKLMVQG YSGNARYKGG
61 LDVARKVIKA DGIRGLYRGF GLSVMTYAPS SAVWWASYGS SQRIIWSLEN LITNLKQCDE
121 APSQLKLVGV QASGGVFAGA VTSFVTTPID TIKTRLQVMD NENKPKAREV VKRLIAEDGW
181 KGLYRGLGPR FFSSSAWGTS MIVCYEYLKR LCAKVEE
NCBI Blastp
PGL 2 (+ strand): 12352 17665
AGS-1 (12352 12640,12723 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15034,15520 15628,15847 15903,15976 16309)
SCR (e 0.983 d 0.000 a 0.000,e 1.000 d 0.511 a 0.000,e 1.000 d 0.964 a 0.978,e 1.000 d 0.000 a 1.000,e 1.000 d 0.992 a 0.939,e 1.000 d 0.973 a 0.989,e 1.000 d 0.890 a 0.830,e 1.000 d 0.979 a 0.910,e 0.977 d 0.995 a 0.000,e 0.910 d 0.794 a 0.933,e 1.000 d 1.000 a 0.995,e 1.000 d 0.991 a 0.993,e 0.997)
Exon 1 12352 12640 ( 289 n); score: 0.983
Intron 1 12641 12722 ( 82 n); Pd: 0.000 Pa: 0.000
Exon 2 12723 12823 ( 101 n); score: 1.000
Intron 2 12824 12920 ( 97 n); Pd: 0.511 Pa: 0.000
Exon 3 12921 12990 ( 70 n); score: 1.000
Intron 3 12991 13196 ( 206 n); Pd: 0.964 Pa: 0.978
Exon 4 13197 13280 ( 84 n); score: 1.000
Intron 4 13281 13380 ( 100 n); Pd: 0.000 Pa: 1.000
Exon 5 13381 13467 ( 87 n); score: 1.000
Intron 5 13468 13886 ( 419 n); Pd: 0.992 Pa: 0.939
Exon 6 13887 13957 ( 71 n); score: 1.000
Intron 6 13958 14109 ( 152 n); Pd: 0.973 Pa: 0.989
Exon 7 14110 14161 ( 52 n); score: 1.000
Intron 7 14162 14253 ( 92 n); Pd: 0.890 Pa: 0.830
Exon 8 14254 14311 ( 58 n); score: 1.000
Intron 8 14312 14684 ( 373 n); Pd: 0.979 Pa: 0.910
Exon 9 14685 14779 ( 95 n); score: 0.977
Intron 9 14780 14879 ( 100 n); Pd: 0.995 Pa: 0.000
Exon 10 14880 15034 ( 155 n); score: 0.910
Intron 10 15035 15519 ( 485 n); Pd: 0.794 Pa: 0.933
Exon 11 15520 15628 ( 109 n); score: 1.000
Intron 11 15629 15846 ( 218 n); Pd: 1.000 Pa: 0.995
Exon 12 15847 15903 ( 57 n); score: 1.000
Intron 12 15904 15975 ( 72 n); Pd: 0.991 Pa: 0.993
Exon 13 15976 16309 ( 334 n); score: 0.997
PGS (12352 12640,12723 12823,12921 12990,13197 13208) 13585839+
PGS (12352 12640,12723 12823,12921 12990) 13585840+
PGS (12380 12640,12723 12823,12921 12990,13197 13207) 18965012+
PGS (12473 12640,12723 12823,12921 12990,13197 13280,13381 13467,13887 13939) 20809597+
PGS (12590 12640,12723 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14260) 14593236+
PGS (12766 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779) 22490341-
PGS (12788 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15034,15520 15573) 9410872+
PGS (12790 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15030) 12030559+
PGS (12814 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14771) 18965015-
PGS (12473 12640) 21278903+
PGS (12478 12586) 25415362+
PGS (13247 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15024) 13120649+
PGS (14110 14161,14254 14311,14685 14779,14880 15034,15520 15628,15847 15903,15976 15985) 24301133+
PGS (14897 15034,15520 15628,15847 15903,15976 16159) 12027888-
PGS (14898 15034,15520 15628,15847 15903,15976 16159) 12038224-
PGS (14906 15034,15520 15628,15847 15903,15976 16159) 12038221-
PGS (14952 15034,15520 15628,15847 15903,15976 16304) 14570760+
PGS (14974 15034,15520 15628,15847 15903,15976 16222) 13586923+
PGS (15520 15628,15847 15903,15976 16159) 24287802-
PGS (15520 15628,15847 15903,15976 16159) 24293407-
PGS (15538 15628,15847 15903,15976 16280) 13586921+
PGS (15598 15628,15847 15903,15976 16291) 5688746-
PGS (15604 15628,15847 15903,15976 16309) 12973578-
3-phase translation of AGS-1 (+strand):
. . . . . .
12352 TTGCTAGTCTTCTTCAGCTTCAGTCCAGTCACAACTGAATCCGCCGCGCAAGGCATCCAA
L L V F F S F S P V T T E S A A Q G I Q
C - S S S A S V Q S Q L N P P R K A S K
A S L L Q L Q S S H N - I R R A R H P
. . . . . .
12412 GGATTTGTTCGTCCTTCGGAGGGTGGGGAATCGAAGCGACGAAAACGAAGCAATGAACGA
G F V R P S E G G E S K R R K R S N E R
D L F V L R R V G N R S D E N E A M N E
R I C S S F G G W G I E A T K T K Q - T
. . . . . .
12472 GGCGGTGCAGGAGGCGAAGCTGCTGCGGCAGGTGAACGCGCTCATCGTGGCGCACCTCCG
G G A G G E A A A A G E R A H R G A P P
A V Q E A K L L R Q V N A L I V A H L R
R R C R R R S C C G R - T R S S W R T S
. . . . . .
12532 TAGCCAGAACCTCGGGCAGGCCGCAGCCGCCGTCGCCGCCGCCACCATGACCCCCATCTC
- P E P R A G R S R R R R R H H D P H L
S Q N L G Q A A A A V A A A T M T P I S
V A R T S G R P Q P P S P P P P - P P S
. . . . . : .
12592 CGCCGCCGAATCCGTCCCCGCAAATCAACTCCTACGTCTCGTGGCCAAG : GGCCTCGCGGC
R R R I R P R K S T P T S R G Q : G P R G
A A E S V P A N Q L L R L V A K : G L A A
P P P N P S P Q I N S Y V S W P R : A S R
. . . . . .
12734 GGAGGGCGGAGGAGGAGCCGCTTCCGCATTCGACTCCGCCGGGTTCGGTGGGGCGGTGCA
G G R R R S R F R I R L R R V R W G G A
E G G G G A A S A F D S A G F G G A V Q
R R A E E E P L P H S T P P G S V G R C
. . . : . . .
12794 GCCGCTCGGCTCCAGTGCCGTGGATTTCAG : TATGCAGGATGTCAAGGGCTCATCCAAGAG
A A R L Q C R G F Q : Y A G C Q G L I Q E
P L G S S A V D F S : M Q D V K G S S K S
S R S A P V P W I S : V C R M S R A H P R
. . . . : . .
12951 CTTCCCCAAGCACGAGGCGAAGCATGTCTCTGACCATAAG : AACGCTGCCCGGTGTGCGAA
L P Q A R G E A C L - P - : E R C P V C E
F P K H E A K H V S D H K : N A A R C A K
A S P S T R R S M S L T I R : T L P G V R
. . . . . .
13217 ATTTAGTCCTGATGGGAAGTATTTTGCAACTGGGAGTGCTGATACATCCATTAAGTTTTT
I - S - W E V F C N W E C - Y I H - V F
F S P D G K Y F A T G S A D T S I K F F
N L V L M G S I L Q L G V L I H P L S F
. : . . . . .
13277 TGAG : GTTGCTAAAATTAAGCAGACTATGGTAGGGGACTCCAAAGATGGTCCTGCCAGGCC
- : G C - N - A D Y G R G L Q R W S C Q A
E : V A K I K Q T M V G D S K D G P A R P
L R : L L K L S R L W - G T P K M V L P G
. . . . : . .
13437 TGTGATTCGCACATTTTATGATCACACACAG : GCCATCAATGATCTGGATTTTCATCCTGA
C D S H I L - S H T : G H Q - S G F S S -
V I R T F Y D H T Q : A I N D L D F H P E
L - F A H F M I T H R : P S M I W I F I L
. . . . . : .
13916 GAGTCCAATACTGATATCAGCTGCAAAAGACAATACAATAAA : ATTTTTTGACTTCTCAAA
E S N T D I S C K R Q Y N K : I F - L L K
S P I L I S A A K D N T I K : F F D F S K
R V Q Y - Y Q L Q K T I Q - : N F L T S Q
. . . . : . .
14128 GACCAATGCGAGGAAAGCGTTCAGAGTTATTCAG : GATACTCATAATGTTAGATCTGTATG
D Q C E E S V Q S Y S : G Y S - C - I C M
T N A R K A F R V I Q : D T H N V R S V C
R P M R G K R S E L F R : I L I M L D L Y
. . . . : . .
14280 TTTTCATCCTTGTGGGGATTACCTTTTAGCAG : GGACTGATCACCCAGTTGCTCATTTATA
F S S L W G L P F S R : D - S P S C S F I
F H P C G D Y L L A : G T D H P V A H L Y
V F I L V G I T F - Q : G L I T Q L L I Y
. . . . . .
14713 TGATATAAATACTTTTACATGCTACTTATCAGCAAATGCACAGGATTCTAGTTCTCCCAT
- Y K Y F Y M L L I S K C T G F - F S H
D I N T F T C Y L S A N A Q D S S S P I
M I - I L L H A T Y Q Q M H R I L V L P
. : . . . . .
14773 TAACCAG : GTACGCTACTCCTGTACTGGGAGCTTGTATGTGACTGCTTCTAAAGATGGTTC
- P : G T L L L Y W E L V C D C F - R W F
N Q : V R Y S C T G S L Y V T A S K D G S
L T R : Y A T P V L G A C M - L L L K M V
. . . . . .
14933 TCTGCGCATTTGGGATGGAGTATCTGCTGAATGTGTTCGACCTATTATTGGAGCACATGG
S A H L G W S I C - M C S T Y Y W S T W
L R I W D G V S A E C V R P I I G A H G
L C A F G M E Y L L N V F D L L L E H M
. . . . . : .
14993 ATCTGCAGAAGCTACTAGCGCAATTTTCACCAGAGATGAGAG : GTATGTCCTATCTTGTGG
I C R S Y - R N F H Q R - E : V C P I L W
S A E A T S A I F T R D E R : Y V L S C G
D L Q K L L A Q F S P E M R : G M S Y L V
. . . . . .
15538 GAAAGATTCTTGTGTCAAGTTATGGGAAGTTGGCACTGGACGACTTGTGAAGCAATATGC
E R F L C Q V M G S W H W T T C E A I C
K D S C V K L W E V G T G R L V K Q Y A
G K I L V S S Y G K L A L D D L - S N M
. . . . : . .
15598 AGGAGCCATTCGCAGACAATTTCGTTGTCAG : GCTGTCTTCAATGAAACCGAAGAATTTGT
R S H S Q T I S L S : G C L Q - N R R I C
G A I R R Q F R C Q : A V F N E T E E F V
Q E P F A D N F V V R : L S S M K P K N L
. . . : . . .
15876 TCTATCAGTTGATGAACAAAACAATGAG : GTTGTCGTCTGGGATGCACTTACTGCAGAAAA
S I S - - T K Q - : G C R L G C T Y C R K
L S V D E Q N N E : V V V W D A L T A E K
F Y Q L M N K T M R : L S S G M H L L Q K
. . . . . .
16008 GGTTGCAAGATTGCCCTCTGGCAGCACTGGTGCTCCCAGATGGCTCGACCACTCCCCAGT
G C K I A L W Q H W C S Q M A R P L P S
V A R L P S G S T G A P R W L D H S P V
R L Q D C P L A A L V L P D G S T T P Q
. . . . . .
16068 TGAACCAGTTTTTGTTATTTGTGGAAATGATAGATCGATCAGATTCTGGAAACAAACCGT
- T S F C Y L W K - - I D Q I L E T N R
E P V F V I C G N D R S I R F W K Q T V
L N Q F L L F V E M I D R S D S G N K P
. . . . . .
16128 ATAGCTTGTAGATTCAACCATTCAAATCAAAAGTATGCTTTCAGTATTACGTTTCAGGAG
I A C R F N H S N Q K Y A F S I T F Q E
- L V D S T I Q I K S M L S V L R F R R
Y S L - I Q P F K S K V C F Q Y Y V S G
. . . . . .
16188 GAATGTGCTCATGTAACTTTAGTTGTATATGGGAGAAATTTGCATAAGCATTTTTTTTAT
E C A H V T L V V Y G R N L H K H F F Y
N V L M - L - L Y M G E I C I S I F F I
G M C S C N F S C I W E K F A - A F F L
. . . . . .
16248 TGGAAACTGCATAAGCAATTGATTGATCTAATAGCAAACCCCAATGATATGTTTTTTTTT
W K L H K Q L I D L I A N P N D M F F F
G N C I S N - L I - - Q T P M I C F F F
L E T A - A I D - S N S K P Q - Y V F F
.
16308 TG
L
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-2_AGS-1_PPS_1 (12359 12640,12723 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14161,14254 14311,14685 14779,14880 15034,15520 15628,15847 15903,15976 16131) (frame '2'; 1374 bp, 458 residues)
1 SSSASVQSQL NPPRKASKDL FVLRRVGNRS DENEAMNEAV QEAKLLRQVN ALIVAHLRSQ
61 NLGQAAAAVA AATMTPISAA ESVPANQLLR LVAKGLAAEG GGGAASAFDS AGFGGAVQPL
121 GSSAVDFSMQ DVKGSSKSFP KHEAKHVSDH KNAARCAKFS PDGKYFATGS ADTSIKFFEV
181 AKIKQTMVGD SKDGPARPVI RTFYDHTQAI NDLDFHPESP ILISAAKDNT IKFFDFSKTN
241 ARKAFRVIQD THNVRSVCFH PCGDYLLAGT DHPVAHLYDI NTFTCYLSAN AQDSSSPINQ
301 VRYSCTGSLY VTASKDGSLR IWDGVSAECV RPIIGAHGSA EATSAIFTRD ERYVLSCGKD
361 SCVKLWEVGT GRLVKQYAGA IRRQFRCQAV FNETEEFVLS VDEQNNEVVV WDALTAEKVA
421 RLPSGSTGAP RWLDHSPVEP VFVICGNDRS IRFWKQTV-
NCBI Blastp
>21326110+_PGL-2_AGS-1_PPS_2 (16101 16307) (frame '1'; 207 bp, 69 residues)
1 IDQILETNRI ACRFNHSNQK YAFSITFQEE CAHVTLVVYG RNLHKHFFYW KLHKQLIDLI
61 ANPNDMFFF
NCBI Blastp
AGS-2 (12444 12648,12714 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14139)
SCR (e 0.847 d 0.000 a 0.000,e 0.718 d 0.511 a 0.000,e 0.800 d 0.964 a 0.978,e 0.869 d 0.000 a 1.000,e 0.810 d 0.992 a 0.939,e 0.859 d 0.973 a 0.989,e 0.700)
Exon 1 12444 12648 ( 205 n); score: 0.847
Intron 1 12649 12713 ( 65 n); Pd: 0.000 Pa: 0.000
Exon 2 12714 12823 ( 110 n); score: 0.718
Intron 2 12824 12920 ( 97 n); Pd: 0.511 Pa: 0.000
Exon 3 12921 12990 ( 70 n); score: 0.800
Intron 3 12991 13196 ( 206 n); Pd: 0.964 Pa: 0.978
Exon 4 13197 13280 ( 84 n); score: 0.869
Intron 4 13281 13380 ( 100 n); Pd: 0.000 Pa: 1.000
Exon 5 13381 13467 ( 87 n); score: 0.810
Intron 5 13468 13886 ( 419 n); Pd: 0.992 Pa: 0.939
Exon 6 13887 13957 ( 71 n); score: 0.859
Intron 6 13958 14109 ( 152 n); Pd: 0.973 Pa: 0.989
Exon 7 14110 14139 ( 30 n); score: 0.700
PGS (12444 12648,12714 12823,12921 12990,13197 13280,13381 13422) 13090650+
PGS (12464 12648,12714 12823,12921 12990,13197 13280,13381 13467,13887 13957) 12035017+
PGS (12464 12648,12714 12823,12921 12990,13197 13280,13381 13467) 12035019+
PGS (12466 12648,12714 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14139) 24328201+
PGS (12473 12648,12714 12823,12921 12942) 21935116+
3-phase translation of AGS-2 (+strand):
. . . . . .
12444 GAAGCGACGAAAACGAAGCAATGAACGAGGCGGTGCAGGAGGCGAAGCTGCTGCGGCAGG
E A T K T K Q - T R R C R R R S C C G R
K R R K R S N E R G G A G G E A A A A G
S D E N E A M N E A V Q E A K L L R Q
. . . . . .
12504 TGAACGCGCTCATCGTGGCGCACCTCCGTAGCCAGAACCTCGGGCAGGCCGCAGCCGCCG
- T R S S W R T S V A R T S G R P Q P P
E R A H R G A P P - P E P R A G R S R R
V N A L I V A H L R S Q N L G Q A A A A
. . . . . .
12564 TCGCCGCCGCCACCATGACCCCCATCTCCGCCGCCGAATCCGTCCCCGCAAATCAACTCC
S P P P P - P P S P P P N P S P Q I N S
R R R H H D P H L R R R I R P R K S T P
V A A A T M T P I S A A E S V P A N Q L
. . . : . . .
12624 TACGTCTCGTGGCCAAGGTCCCCCC : GGTTCGCAGGGCCTCGCGGCGGAGGGCGGAGGAGG
Y V S W P R S P : R F A G P R G G G R R R
T S R G Q G P P : G S Q G L A A E G G G G
L R L V A K V P P : V R R A S R R R A E E
. . . . . .
12749 AGCCGCTTCCGCATTCGACTCCGCCGGGTTCGGTGGGGCGGTGCAGCCGCTCGGCTCCAG
S R F R I R L R R V R W G G A A A R L Q
A A S A F D S A G F G G A V Q P L G S S
E P L P H S T P P G S V G R C S R S A P
. . : . . . .
12809 TGCCGTGGATTTCAG : TATGCAGGATGTCAAGGGCTCATCCAAGAGCTTCCCCAAGCACGA
C R G F Q : Y A G C Q G L I Q E L P Q A R
A V D F S : M Q D V K G S S K S F P K H E
V P W I S : V C R M S R A H P R A S P S T
. . . : . . .
12966 GGCGAAGCATGTCTCTGACCATAAG : AACGCTGCCCGGTGTGCGAAATTTAGTCCTGATGG
G E A C L - P - : E R C P V C E I - S - W
A K H V S D H K : N A A R C A K F S P D G
R R S M S L T I R : T L P G V R N L V L M
. . . . . : .
13232 GAAGTATTTTGCAACTGGGAGTGCTGATACATCCATTAAGTTTTTTGAG : GTTGCTAAAAT
E V F C N W E C - Y I H - V F - : G C - N
K Y F A T G S A D T S I K F F E : V A K I
G S I L Q L G V L I H P L S F L R : L L K
. . . . . .
13392 TAAGCAGACTATGGTAGGGGACTCCAAAGATGGTCCTGCCAGGCCTGTGATTCGCACATT
- A D Y G R G L Q R W S C Q A C D S H I
K Q T M V G D S K D G P A R P V I R T F
L S R L W - G T P K M V L P G L - F A H
. . : . . . .
13452 TTATGATCACACACAG : GCCATCAATGATCTGGATTTTCATCCTGAGAGTCCAATACTGAT
L - S H T : G H Q - S G F S S - E S N T D
Y D H T Q : A I N D L D F H P E S P I L I
F M I T H R : P S M I W I F I L R V Q Y -
. . . : . . .
13931 ATCAGCTGCAAAAGACAATACAATAAA : ATTTTTTGACTTCTCAAAGACCAATGCGAG
I S C K R Q Y N K : I F - L L K D Q C E
S A A K D N T I K : F F D F S K T N A
Y Q L Q K T I Q - : N F L T S Q R P M R
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-2_AGS-2_PPS_1 (12535 12648,12714 12823,12921 12990,13197 13280,13381 13467,13887 13957,14110 14137) (frame '2'; 564 bp, 188 residues)
1 PEPRAGRSRR RRRHHDPHLR RRIRPRKSTP TSRGQGPPGS QGLAAEGGGG AASAFDSAGF
61 GGAVQPLGSS AVDFSMQDVK GSSKSFPKHE AKHVSDHKNA ARCAKFSPDG KYFATGSADT
121 SIKFFEVAKI KQTMVGDSKD GPARPVIRTF YDHTQAINDL DFHPESPILI SAAKDNTIKF
181 FDFSKTNA
NCBI Blastp
AGS-3 (12473 12650,12718 12823,12921 12990,13197 13295)
SCR (e 0.843 d 0.000 a 0.000,e 0.689 d 0.511 a 0.000,e 0.757 d 0.964 a 0.978,e 0.828)
Exon 1 12473 12650 ( 178 n); score: 0.843
Intron 1 12651 12717 ( 67 n); Pd: 0.000 Pa: 0.000
Exon 2 12718 12823 ( 106 n); score: 0.689
Intron 2 12824 12920 ( 97 n); Pd: 0.511 Pa: 0.000
Exon 3 12921 12990 ( 70 n); score: 0.757
Intron 3 12991 13196 ( 206 n); Pd: 0.964 Pa: 0.978
Exon 4 13197 13295 ( 99 n); score: 0.828
PGS (12473 12650,12718 12823,12921 12990,13197 13295) 9661046+
3-phase translation of AGS-3 (+strand):
. . . . . .
12473 GCGGTGCAGGAGGCGAAGCTGCTGCGGCAGGTGAACGCGCTCATCGTGGCGCACCTCCGT
A V Q E A K L L R Q V N A L I V A H L R
R C R R R S C C G R - T R S S W R T S V
G A G G E A A A A G E R A H R G A P P
. . . . . .
12533 AGCCAGAACCTCGGGCAGGCCGCAGCCGCCGTCGCCGCCGCCACCATGACCCCCATCTCC
S Q N L G Q A A A A V A A A T M T P I S
A R T S G R P Q P P S P P P P - P P S P
- P E P R A G R S R R R R R H H D P H L
. . . . . . :
12593 GCCGCCGAATCCGTCCCCGCAAATCAACTCCTACGTCTCGTGGCCAAGGTCCCCCCAC : CG
A A E S V P A N Q L L R L V A K V P P : P
P P N P S P Q I N S Y V S W P R S P H : R
R R R I R P R K S T P T S R G Q G P P T :
. . . . . .
12720 CAGGGCCTCGCGGCGGAGGGCGGAGGAGGAGCCGCTTCCGCATTCGACTCCGCCGGGTTC
Q G L A A E G G G G A A S A F D S A G F
R A S R R R A E E E P L P H S T P P G S
A G P R G G G R R R S R F R I R L R R V
. . . . . : .
12780 GGTGGGGCGGTGCAGCCGCTCGGCTCCAGTGCCGTGGATTTCAG : TATGCAGGATGTCAAG
G G A V Q P L G S S A V D F S : M Q D V K
V G R C S R S A P V P W I S : V C R M S R
R W G G A A A R L Q C R G F Q : Y A G C Q
. . . . . . :
12937 GGCTCATCCAAGAGCTTCCCCAAGCACGAGGCGAAGCATGTCTCTGACCATAAG : AACGCT
G S S K S F P K H E A K H V S D H K : N A
A H P R A S P S T R R S M S L T I R : T L
G L I Q E L P Q A R G E A C L - P - : E R
. . . . . .
13203 GCCCGGTGTGCGAAATTTAGTCCTGATGGGAAGTATTTTGCAACTGGGAGTGCTGATACA
A R C A K F S P D G K Y F A T G S A D T
P G V R N L V L M G S I L Q L G V L I H
C P V C E I - S - W E V F C N W E C - Y
. . . .
13263 TCCATTAAGTTTTTTGAGGTGAACTTGAAATTT
S I K F F E V N L K F
P L S F L R - T - N
I H - V F - G E L E I
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-2_AGS-3_PPS_1 (12473 12650,12718 12823,12921 12990,13197 13295) (frame '1'; 453 bp, 151 residues)
1 AVQEAKLLRQ VNALIVAHLR SQNLGQAAAA VAAATMTPIS AAESVPANQL LRLVAKVPPP
61 QGLAAEGGGG AASAFDSAGF GGAVQPLGSS AVDFSMQDVK GSSKSFPKHE AKHVSDHKNA
121 ARCAKFSPDG KYFATGSADT SIKFFEVNLK F
NCBI Blastp
AGS-4 (12473 12642,12704 12823,12921 12990,13197 13262)
SCR (e 0.853 d 0.000 a 0.000,e 0.558 d 0.511 a 0.000,e 0.757 d 0.964 a 0.978,e 0.848)
Exon 1 12473 12642 ( 170 n); score: 0.853
Intron 1 12643 12703 ( 61 n); Pd: 0.000 Pa: 0.000
Exon 2 12704 12823 ( 120 n); score: 0.558
Intron 2 12824 12920 ( 97 n); Pd: 0.511 Pa: 0.000
Exon 3 12921 12990 ( 70 n); score: 0.757
Intron 3 12991 13196 ( 206 n); Pd: 0.964 Pa: 0.978
Exon 4 13197 13262 ( 66 n); score: 0.848
PGS (12473 12642,12704 12823,12921 12990,13197 13262) 9359764+
3-phase translation of AGS-4 (+strand):
. . . . . .
12473 GCGGTGCAGGAGGCGAAGCTGCTGCGGCAGGTGAACGCGCTCATCGTGGCGCACCTCCGT
A V Q E A K L L R Q V N A L I V A H L R
R C R R R S C C G R - T R S S W R T S V
G A G G E A A A A G E R A H R G A P P
. . . . . .
12533 AGCCAGAACCTCGGGCAGGCCGCAGCCGCCGTCGCCGCCGCCACCATGACCCCCATCTCC
S Q N L G Q A A A A V A A A T M T P I S
A R T S G R P Q P P S P P P P - P P S P
- P E P R A G R S R R R R R H H D P H L
. . . . . : .
12593 GCCGCCGAATCCGTCCCCGCAAATCAACTCCTACGTCTCGTGGCCAAGGT : CCTCACTGTT
A A E S V P A N Q L L R L V A K V : L T V
P P N P S P Q I N S Y V S W P R : S S L L
R R R I R P R K S T P T S R G Q G : P H C
. . . . . .
12714 GGTTCGCAGGGCCTCGCGGCGGAGGGCGGAGGAGGAGCCGCTTCCGCATTCGACTCCGCC
G S Q G L A A E G G G G A A S A F D S A
V R R A S R R R A E E E P L P H S T P P
W F A G P R G G G R R R S R F R I R L R
. . . . . : .
12774 GGGTTCGGTGGGGCGGTGCAGCCGCTCGGCTCCAGTGCCGTGGATTTCAG : TATGCAGGAT
G F G G A V Q P L G S S A V D F S : M Q D
G S V G R C S R S A P V P W I S : V C R M
R V R W G G A A A R L Q C R G F Q : Y A G
. . . . . . :
12931 GTCAAGGGCTCATCCAAGAGCTTCCCCAAGCACGAGGCGAAGCATGTCTCTGACCATAAG :
V K G S S K S F P K H E A K H V S D H K :
S R A H P R A S P S T R R S M S L T I R :
C Q G L I Q E L P Q A R G E A C L - P - :
. . . . . .
13197 AACGCTGCCCGGTGTGCGAAATTTAGTCCTGATGGGAAGTATTTTGCAACTGGGAGTGCT
N A A R C A K F S P D G K Y F A T G S A
T L P G V R N L V L M G S I L Q L G V L
E R C P V C E I - S - W E V F C N W E C
.
13257 GATACA
D T
I
- Y
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-2_AGS-4_PPS_1 (12473 12642,12704 12823,12921 12990,13197 13262) (frame '1'; 426 bp, 142 residues)
1 AVQEAKLLRQ VNALIVAHLR SQNLGQAAAA VAAATMTPIS AAESVPANQL LRLVAKVLTV
61 GSQGLAAEGG GGAASAFDSA GFGGAVQPLG SSAVDFSMQD VKGSSKSFPK HEAKHVSDHK
121 NAARCAKFSP DGKYFATGSA DT
NCBI Blastp
AGS-5 (14844 14868,15234 15240,15908 15924,15976 15981,16321 16334,16506 16536,16897 17040)
SCR (e 0.760 d 0.000 a 0.765,e 0.714 d 0.243 a 0.000,e 0.765 d 0.022 a 0.993,e 0.833 d 0.000 a 0.818,e 0.571 d 0.000 a 0.758,e 0.710 d 0.000 a 0.000,e 0.736)
Exon 1 14844 14868 ( 25 n); score: 0.760
Intron 1 14869 15233 ( 365 n); Pd: 0.000 Pa: 0.765
Exon 2 15234 15240 ( 7 n); score: 0.714
Intron 2 15241 15907 ( 667 n); Pd: 0.243 Pa: 0.000
Exon 3 15908 15924 ( 17 n); score: 0.765
Intron 3 15925 15975 ( 51 n); Pd: 0.022 Pa: 0.993
Exon 4 15976 15981 ( 6 n); score: 0.833
Intron 4 15982 16320 ( 339 n); Pd: 0.000 Pa: 0.818
Exon 5 16321 16334 ( 14 n); score: 0.571
Intron 5 16335 16505 ( 171 n); Pd: 0.000 Pa: 0.758
Exon 6 16506 16536 ( 31 n); score: 0.710
Intron 6 16537 16896 ( 360 n); Pd: 0.000 Pa: 0.000
Exon 7 16897 17040 ( 144 n); score: 0.736
PGS (14844 14868,15234 15240,15908 15924,15976 15981,16321 16334,16506 16536,16897 17040) 14571087+
3-phase translation of AGS-5 (+strand):
. . . : . : . : . :
14844 TTCTCCGCCAGCCATGCTTACTGAT : ACGTGTC : ATTCCAAATTGAGAACA : GTTGTC : CTGAT
F S A S H A Y - : Y V S : F Q I E N : S C : P D
S P P A M L T D : T C : H S K L R T : V V : L M
L R Q P C L L I : R V : I P N - E Q : L S : -
. : . . . : . .
16326 GACAGTTGT : GGCATGTTTAGATTGAAGATGAAAATTTTTT : TTTTTGGTTTTTGAGACTGT
D S C : G M F R L K M K I F : F F G F - D C
T V V : A C L D - R - K F F : F L V F E T V
- Q L : W H V - I E D E N F F : F W F L R L
. . . . . .
16917 AGCACTTTCGTTTTTATTTGACAAATATTGTCTAATCATAGAGTAACTAGGTTTAAAAGA
S T F V F I - Q I L S N H R V T R F K R
A L S F L F D K Y C L I I E - L G L K D
- H F R F Y L T N I V - S - S N - V - K
. . . . . .
16977 TTTATCTCGCGATTTATAGGTAAACTGTGCAATTAGTTTTTATTTTTGTATATATTTAAT
F I S R F I G K L C N - F L F L Y I F N
L S R D L - V N C A I S F Y F C I Y L M
I Y L A I Y R - T V Q L V F I F V Y I -
.
17037 GCTT
A
L
C
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-6 (14855 14879,15884 15903,16875 16970)
SCR (e 0.720 d 0.978 a 0.361,e 0.500 d 0.991 a 0.000,e 0.833)
Exon 1 14855 14879 ( 25 n); score: 0.720
Intron 1 14880 15883 (1004 n); Pd: 0.978 Pa: 0.361
Exon 2 15884 15903 ( 20 n); score: 0.500
Intron 2 15904 16874 ( 971 n); Pd: 0.991 Pa: 0.000
Exon 3 16875 16970 ( 96 n); score: 0.833
PGS (14855 14879,15884 15903,16875 16970) 13469214+
3-phase translation of AGS-6 (+strand):
. . . : . . : .
14855 CCATGCTTACTGATGTTGCTGCCAG : TTGATGAACAAAACAATGAG : GGCCTTGTTTAGTTT
P C L L M L L P : V D E Q N N E : G L V - F
H A Y - C C C Q : L M N K T M R : A L F S F
M L T D V A A S : - - T K Q - : G P C L V
. . . . . .
16890 CGAAAACTTTTTGGTTTTTGAGACTGTAGCACTTTCGTTTTTATTTGACAAATATTGTCT
R K L F G F - D C S T F V F I - Q I L S
E N F L V F E T V A L S F L F D K Y C L
S K T F W F L R L - H F R F Y L T N I V
. . .
16950 AATCATAGAGTAACTAGGTTT
N H R V T R F
I I E - L G
- S - S N - V
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-7 (16506 16747,17005 17091)
SCR (e 0.769 d 0.780 a 0.000,e 0.774)
Exon 1 16506 16747 ( 242 n); score: 0.769
Intron 1 16748 17004 ( 257 n); Pd: 0.780 Pa: 0.000
Exon 2 17005 17091 ( 87 n); score: 0.774
PGS (16506 16747,17005 17091) 7218093-
PGS (16539 16747,17005 17066) 27548386+
3-phase translation of AGS-7 (+strand):
. . . . . .
16506 GGCATGTTTAGATTGAAGATGAAAATTTTTTAGGTCACATCGGATATGTCGGAAGGATGT
G M F R L K M K I F - V T S D M S E G C
A C L D - R - K F F R S H R I C R K D V
H V - I E D E N F L G H I G Y V G R M
. . . . . .
16566 CGGGAGGGGTTTTTAAAAACTAATAAAAAAAACAAATTACATAACTCGTCAGGAAACTGC
R E G F L K T N K K N K L H N S S G N C
G R G F - K L I K K T N Y I T R Q E T A
S G G V F K N - - K K Q I T - L V R K L
. . . . . .
16626 AAGACGAATCTATTAAGTATAATTAATCTATTATTAGCACATGTGGGTTACTGTAGCACT
K T N L L S I I N L L L A H V G Y C S T
R R I Y - V - L I Y Y - H M W V T V A L
Q D E S I K Y N - S I I S T C G L L - H
. . . . . .
16686 TAAGGCTAATCATGGACTAACTAGGCTTAAAAAATTCATCTCGCGATTTTCAACCAAACT
- G - S W T N - A - K I H L A I F N Q T
K A N H G L T R L K K F I S R F S T K L
L R L I M D - L G L K N S S R D F Q P N
. : . . . . .
16746 GT : GCAATTAGTTTTTATTTTTGTATATATTTAATGCTTCATGCATGTGTCGTAATATTTG
V : Q L V F I F V Y I - C F M H V S - Y L
: C N - F L F L Y I F N A S C M C R N I -
C : A I S F Y F C I Y L M L H A C V V I F
. . .
17063 ATGTGTTGAGAAATTTTGAAAAGTTTTTG
M C - E I L K S F
C V E K F - K V F
D V L R N F E K F L
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-8 (16629 16679,16939 17036)
SCR (e 0.745 d 0.000 a 0.000,e 0.724)
Exon 1 16629 16679 ( 51 n); score: 0.745
Intron 1 16680 16938 ( 259 n); Pd: 0.000 Pa: 0.000
Exon 2 16939 17036 ( 98 n); score: 0.724
PGS (16629 16679,16939 17036) 15856082-
3-phase translation of AGS-8 (+strand):
. . . . . . :
16629 ACGAATCTATTAAGTATAATTAATCTATTATTAGCACATGTGGGTTACTGT : AAATATTGT
T N L L S I I N L L L A H V G Y C : K Y C
R I Y - V - L I Y Y - H M W V T V : N I V
E S I K Y N - S I I S T C G L L : - I L
. . . . . .
16948 CTAATCATAGAGTAACTAGGTTTAAAAGATTTATCTCGCGATTTATAGGTAAACTGTGCA
L I I E - L G L K D L S R D L - V N C A
- S - S N - V - K I Y L A I Y R - T V Q
S N H R V T R F K R F I S R F I G K L C
. . .
17008 ATTAGTTTTTATTTTTGTATATATTTAAT
I S F Y F C I Y L
L V F I F V Y I -
N - F L F L Y I F N
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-9 (16586 16685,16941 17066)
SCR (e 0.770 d 0.000 a 0.000,e 0.762)
Exon 1 16586 16685 ( 100 n); score: 0.770
Intron 1 16686 16940 ( 255 n); Pd: 0.000 Pa: 0.000
Exon 2 16941 17066 ( 126 n); score: 0.762
PGS (16586 16685,16941 17066) 12622939-
3-phase translation of AGS-9 (+strand):
. . . . . .
16586 TAATAAAAAAAACAAATTACATAACTCGTCAGGAAACTGCAAGACGAATCTATTAAGTAT
- - K K Q I T - L V R K L Q D E S I K Y
N K K N K L H N S S G N C K T N L L S I
I K K T N Y I T R Q E T A R R I Y - V
. . . . : . .
16646 AATTAATCTATTATTAGCACATGTGGGTTACTGTAGCACT : ATATTGTCTAATCATAGAGT
N - S I I S T C G L L - H : Y I V - S - S
I N L L L A H V G Y C S T : I L S N H R V
- L I Y Y - H M W V T V A L : Y C L I I E
. . . . . .
16961 AACTAGGTTTAAAAGATTTATCTCGCGATTTATAGGTAAACTGTGCAATTAGTTTTTATT
N - V - K I Y L A I Y R - T V Q L V F I
T R F K R F I S R F I G K L C N - F L F
- L G L K D L S R D L - V N C A I S F Y
. . . . .
17021 TTTGTATATATTTAATGCTTCATGCATGTGTCGTAATATTTGATGT
F V Y I - C F M H V S - Y L M
L Y I F N A S C M C R N I - C
F C I Y L M L H A C V V I F D
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-10 (17372 17665)
SCR (e 0.745)
Exon 1 17372 17665 ( 294 n); score: 0.745
PGS (17372 17665) 25451626+
3-phase translation of AGS-10 (+strand):
. . . . . .
17372 GCCATGGCTTTCTCCCCGCGCTCGCCGTGGTCGCGTCCCAAGAGAAACGACGTCTACTCA
A M A F S P R S P W S R P K R N D V Y S
P W L S P R A R R G R V P R E T T S T Q
H G F L P A L A V V A S Q E K R R L L
. . . . . .
17432 ACCTTCGTCGTCCACGGCGATGACGACGAGGACGACGCCCGCGGCAGCAGGCGCGGCAGG
T F V V H G D D D E D D A R G S R R G R
P S S S T A M T T R T T P A A A G A A G
N L R R P R R - R R G R R P R Q Q A R Q
. . . . . .
17492 GGCCCGTCCACGCGGGCGGAGGAAGACGAGGAGGAAGACCCCTCCTCGCTGCCTCCGCTT
G P S T R A E E D E E E D P S S L P P L
A R P R G R R K T R R K T P P R C L R F
G P V H A G G G R R G G R P L L A A S A
. . . . . .
17552 CTCCAGCGGCTCCCCAAGGACTTCGGCGGCCCCTCCTTTGACGAAGACGAGGACGCCTAC
L Q R L P K D F G G P S F D E D E D A Y
S S G S P R T S A A P P L T K T R T P T
S P A A P Q G L R R P L L - R R R G R L
. . . . . .
17612 TCCTCCGACCCCGACGATGCTTCCCTCTCCGCTACGGTGGTCTTCAAGAGCGGC
S S D P D D A S L S A T V V F K S G
P P T P T M L P S P L R W S S R A
L L R P R R C F P L R Y G G L Q E R
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-2_AGS-10_PPS_1 (17372 17665) (frame '1'; 294 bp, 98 residues)
1 AMAFSPRSPW SRPKRNDVYS TFVVHGDDDE DDARGSRRGR GPSTRAEEDE EEDPSSLPPL
61 LQRLPKDFGG PSFDEDEDAY SSDPDDASLS ATVVFKSG
NCBI Blastp
>21326110+_PGL-2_AGS-10_PPS_2 (17373 17663) (frame '2'; 291 bp, 97 residues)
1 PWLSPRARRG RVPRETTSTQ PSSSTAMTTR TTPAAAGAAG ARPRGRRKTR RKTPPRCLRF
61 SSGSPRTSAA PPLTKTRTPT PPTPTMLPSP LRWSSRA
NCBI Blastp
3-phase translation of AGS-10 (-strand):
. . . . . .
17665 GCCGCTCTTGAAGACCACCGTAGCGGAGAGGGAAGCATCGTCGGGGTCGGAGGAGTAGGC
A A L E D H R S G E G S I V G V G G V G
P L L K T T V A E R E A S S G S E E - A
R S - R P P - R R G K H R R G R R S R
. . . . . .
17605 GTCCTCGTCTTCGTCAAAGGAGGGGCCGCCGAAGTCCTTGGGGAGCCGCTGGAGAAGCGG
V L V F V K G G A A E V L G E P L E K R
S S S S S K E G P P K S L G S R W R S G
R P R L R Q R R G R R S P W G A A G E A
. . . . . .
17545 AGGCAGCGAGGAGGGGTCTTCCTCCTCGTCTTCCTCCGCCCGCGTGGACGGGCCCCTGCC
R Q R G G V F L L V F L R P R G R A P A
G S E E G S S S S S S S A R V D G P L P
E A A R R G L P P R L P P P A W T G P C
. . . . . .
17485 GCGCCTGCTGCCGCGGGCGTCGTCCTCGTCGTCATCGCCGTGGACGACGAAGGTTGAGTA
A P A A A G V V L V V I A V D D E G - V
R L L P R A S S S S S S P W T T K V E -
R A C C R G R R P R R H R R G R R R L S
. . . . . .
17425 GACGTCGTTTCTCTTGGGACGCGACCACGGCGAGCGCGGGGAGAAAGCCATGGC
D V V S L G T R P R R A R G E S H G
T S F L L G R D H G E R G E K A M
R R R F S W D A T T A S A G R K P W
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110-_PGL-2_AGS-10_PPS_1 (17642 17373) (frame '0'; 270 bp, 90 residues)
1 RRGKHRRGRR SRRPRLRQRR GRRSPWGAAG EAEAARRGLP PRLPPPAWTG PCRACCRGRR
61 PRRHRRGRRR LSRRRFSWDA TTASAGRKPW
NCBI Blastp
PGL 3 (- strand): 17104 15201
AGS-1 (17104 16939,16683 16583,16477 16452,15876 15865,15706 15680,15646 15628,15222 15201)
SCR (e 0.820 d 0.000 a 0.000,e 0.782 d 0.000 a 0.593,e 0.692 d 0.000 a 0.884,e 0.583 d 0.000 a 0.000,e 0.741 d 0.000 a 0.334,e 0.789 d 0.000 a 0.033,e 0.818)
Exon 1 17104 16939 ( 166 n); score: 0.820
Intron 1 16938 16684 ( 255 n); Pd: 0.000 Pa: 0.000
Exon 2 16683 16583 ( 101 n); score: 0.782
Intron 2 16582 16478 ( 105 n); Pd: 0.000 Pa: 0.593
Exon 3 16477 16452 ( 26 n); score: 0.692
Intron 3 16451 15877 ( 575 n); Pd: 0.000 Pa: 0.884
Exon 4 15876 15865 ( 12 n); score: 0.583
Intron 4 15864 15707 ( 158 n); Pd: 0.000 Pa: 0.000
Exon 5 15706 15680 ( 27 n); score: 0.741
Intron 5 15679 15647 ( 33 n); Pd: 0.000 Pa: 0.334
Exon 6 15646 15628 ( 19 n); score: 0.789
Intron 6 15627 15223 ( 405 n); Pd: 0.000 Pa: 0.033
Exon 7 15222 15201 ( 22 n); score: 0.818
PGS (17066 16939,16683 16583,16477 16452,15876 15865,15706 15680,15646 15628,15222 15201) 25807618+
PGS (17091 16914) 6859140-
PGS (17091 16914) 6859177-
PGS (17091 16914) 24978904+
PGS (17084 16914) 6675384-
PGS (17046 16914) 6859195-
PGS (17091 16916) 8548455+
PGS (17104 16974) 11679374+
PGS (17104 16994) 14514413+
3-phase translation of AGS-1 (-strand):
. . . . . .
17104 TCACCCCAAAAACCAAAAACTTTTCAAAATTTCTCAACACATCAAATATTACGACACATG
S P Q K P K T F Q N F S T H Q I L R H M
H P K N Q K L F K I S Q H I K Y Y D T C
T P K T K N F S K F L N T S N I T T H
. . . . . .
17044 CATGAAGCATTAAATATATACAAAAATAAAAACTAATTGCACAGTTTACCTATAAATCGC
H E A L N I Y K N K N - L H S L P I N R
M K H - I Y T K I K T N C T V Y L - I A
A - S I K Y I Q K - K L I A Q F T Y K S
. . . . . : .
16984 GAGATAAATCTTTTAAACCTAGTTACTCTATGATTAGACAATATTT : TGCTACAGTAACCC
E I N L L N L V T L - L D N I : L L Q - P
R - I F - T - L L Y D - T I F : C Y S N P
R D K S F K P S Y S M I R Q Y F : A T V T
. . . . . .
16669 ACATGTGCTAATAATAGATTAATTATACTTAATAGATTCGTCTTGCAGTTTCCTGACGAG
T C A N N R L I I L N R F V L Q F P D E
H V L I I D - L Y L I D S S C S F L T S
H M C - - - I N Y T - - I R L A V S - R
. . . : . . . :
16609 TTATGTAATTTGTTTTTTTTATTAGTT : AACTTTTATAGGCTATCACACATGTG : AACAAAT
L C N L F F L L V : N F Y R L S H M - : T N
Y V I C F F Y - L : T F I G Y H T C : E Q I
V M - F V F F I S : - L L - A I T H V : N K
. : . . . : . . :
15869 TCTTC : AAAAATAATATATATGGCACACGAGTA : AAACACAGAGAAACTAACC : GAAATTATC
S S : K I I Y M A H E - : N T E K L T : E I I
L : Q K - Y I W H T S : K T Q R N - P : K L S
F F : K N N I Y G T R V : K H R E T N : R N Y
. .
15213 CAGGACATGTTAT
Q D M L
R T C Y
P G H V
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-2 (17104 16890,16363 16341)
SCR (e 0.804 d 0.000 a 0.000,e 0.739)
Exon 1 17104 16890 ( 215 n); score: 0.804
Intron 1 16889 16364 ( 526 n); Pd: 0.000 Pa: 0.000
Exon 2 16363 16341 ( 23 n); score: 0.739
PGS (17023 16890,16363 16341) 9307163-
PGS (17091 16867) 7553385-
PGS (17078 16867) 13587489-
PGS (16972 16867) 18052346-
PGS (16966 16871) 7554466-
PGS (17097 16874) 18066500-
PGS (17093 16874) 20549510-
PGS (17085 16874) 20548647-
PGS (17066 16874) 8548754-
PGS (17024 16874) 6672435-
PGS (16970 16874) 6673765-
PGS (17064 16875) 14514528-
PGS (17056 16876) 11996680-
PGS (17091 16878) 9301429+
PGS (17091 16883) 9299558-
PGS (17091 16887) 11552500-
PGS (17091 16887) 11552512-
PGS (17104 16888) 8088762-
PGS (17064 16897) 12617906-
PGS (17024 16910) 6673837-
PGS (17041 16912) 12501667-
3-phase translation of AGS-2 (-strand):
. . . . . .
17104 TCACCCCAAAAACCAAAAACTTTTCAAAATTTCTCAACACATCAAATATTACGACACATG
S P Q K P K T F Q N F S T H Q I L R H M
H P K N Q K L F K I S Q H I K Y Y D T C
T P K T K N F S K F L N T S N I T T H
. . . . . .
17044 CATGAAGCATTAAATATATACAAAAATAAAAACTAATTGCACAGTTTACCTATAAATCGC
H E A L N I Y K N K N - L H S L P I N R
M K H - I Y T K I K T N C T V Y L - I A
A - S I K Y I Q K - K L I A Q F T Y K S
. . . . . .
16984 GAGATAAATCTTTTAAACCTAGTTACTCTATGATTAGACAATATTTGTCAAATAAAAACG
E I N L L N L V T L - L D N I C Q I K T
R - I F - T - L L Y D - T I F V K - K R
R D K S F K P S Y S M I R Q Y L S N K N
. . . . : . .
16924 AAAGTGCTACAGTCTCAAAAACCAAAAAGTTTTCG : GACCAATAAGAATCAGGTCAAGG
K V L Q S Q K P K S F R : T N K N Q V K
K C Y S L K N Q K V F : G P I R I R S R
E S A T V S K T K K F S : D Q - E S G Q
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-3 (16223 16066)
SCR (e 0.968)
Exon 1 16223 16066 ( 158 n); score: 0.968
PGS (16223 16066) 13586922-
3-phase translation of AGS-3 (-strand):
. . . . . .
16223 TCTCCCATATACAACTAAAGTTACATGAGCACATTCCTCCTGAAACGTAATACTGAAAGC
S P I Y N - S Y M S T F L L K R N T E S
L P Y T T K V T - A H S S - N V I L K A
S H I Q L K L H E H I P P E T - Y - K
. . . . . .
16163 ATACTTTTGATTTGAATGGTTGAATCTACAAGCTATACGGTTTGTTTCCAGAATCTGATC
I L L I - M V E S T S Y T V C F Q N L I
Y F - F E W L N L Q A I R F V S R I - S
H T F D L N G - I Y K L Y G L F P E S D
. . . .
16103 GATCTATCATTTCCACAAATAACAAAAACTGGTTCAAC
D L S F P Q I T K T G S
I Y H F H K - Q K L V Q
R S I I S T N N K N W F N
Maximal non-overlapping open reading frames (>= 64 codons):
none
3-phase translation of AGS-3 (+strand):
. . . . . .
16066 GTTGAACCAGTTTTTGTTATTTGTGGAAATGATAGATCGATCAGATTCTGGAAACAAACC
V E P V F V I C G N D R S I R F W K Q T
L N Q F L L F V E M I D R S D S G N K P
- T S F C Y L W K - - I D Q I L E T N
. . . . . .
16126 GTATAGCTTGTAGATTCAACCATTCAAATCAAAAGTATGCTTTCAGTATTACGTTTCAGG
V - L V D S T I Q I K S M L S V L R F R
Y S L - I Q P F K S K V C F Q Y Y V S G
R I A C R F N H S N Q K Y A F S I T F Q
. . . .
16186 AGGAATGTGCTCATGTAACTTTAGTTGTATATGGGAGA
R N V L M - L - L Y M G
G M C S C N F S C I W E
E E C A H V T L V V Y G R
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-4 (17104 16878,16584 16544)
SCR (e 0.802 d 0.000 a 0.795,e 0.512)
Exon 1 17104 16878 ( 227 n); score: 0.802
Intron 1 16877 16585 ( 293 n); Pd: 0.000 Pa: 0.795
Exon 2 16584 16544 ( 41 n); score: 0.512
PGS (17104 16878,16584 16544) 18065753+
PGS (16981 16863) 11680489+
3-phase translation of AGS-4 (-strand):
. . . . . .
17104 TCACCCCAAAAACCAAAAACTTTTCAAAATTTCTCAACACATCAAATATTACGACACATG
S P Q K P K T F Q N F S T H Q I L R H M
H P K N Q K L F K I S Q H I K Y Y D T C
T P K T K N F S K F L N T S N I T T H
. . . . . .
17044 CATGAAGCATTAAATATATACAAAAATAAAAACTAATTGCACAGTTTACCTATAAATCGC
H E A L N I Y K N K N - L H S L P I N R
M K H - I Y T K I K T N C T V Y L - I A
A - S I K Y I Q K - K L I A Q F T Y K S
. . . . . .
16984 GAGATAAATCTTTTAAACCTAGTTACTCTATGATTAGACAATATTTGTCAAATAAAAACG
E I N L L N L V T L - L D N I C Q I K T
R - I F - T - L L Y D - T I F V K - K R
R D K S F K P S Y S M I R Q Y L S N K N
. . . . . : .
16924 AAAGTGCTACAGTCTCAAAAACCAAAAAGTTTTCGAAACTAAACAAG : TTTTTAAAAACCC
K V L Q S Q K P K S F R N - T S : F - K P
K C Y S L K N Q K V F E T K Q : V F K N P
E S A T V S K T K K F S K L N K : F L K T
. . .
16571 CTCCCGACATCCTTCCGACATATCCGAT
L P T S F R H I R
S R H P S D I S D
P P D I L P T Y P
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-5 (17065 17000,16743 16502)
SCR (e 0.879 d 0.000 a 0.088,e 0.770)
Exon 1 17065 17000 ( 66 n); score: 0.879
Intron 1 16999 16744 ( 256 n); Pd: 0.000 Pa: 0.088
Exon 2 16743 16502 ( 242 n); score: 0.770
PGS (17065 17000,16743 16544) 25805124+
PGS (16637 16502) 13152848-
PGS (16710 16506) 6859196-
PGS (16762 16582) 16578696-
PGS (16743 16597) 18388584+
3-phase translation of AGS-5 (-strand):
. . . . . .
17065 CATCAAATATTACGACACATGCATGAAGCATTAAATATATACAAAAATAAAAACTAATTG
H Q I L R H M H E A L N I Y K N K N - L
I K Y Y D T C M K H - I Y T K I K T N C
S N I T T H A - S I K Y I Q K - K L I
. : . . . . .
17005 CACAGT : TTTGGTTGAAAATCGCGAGATGAATTTTTTAAGCCTAGTTAGTCCATGATTAGC
H S : F G - K S R D E F F K P S - S M I S
T V : L V E N R E M N F L S L V S P - L A
A Q : F W L K I A R - I F - A - L V H D -
. . . . . .
16689 CTTAAGTGCTACAGTAACCCACATGTGCTAATAATAGATTAATTATACTTAATAGATTCG
L K C Y S N P H V L I I D - L Y L I D S
L S A T V T H M C - - - I N Y T - - I R
P - V L Q - P T C A N N R L I I L N R F
. . . . . .
16629 TCTTGCAGTTTCCTGACGAGTTATGTAATTTGTTTTTTTTATTAGTTTTTAAAAACCCCT
S C S F L T S Y V I C F F Y - F L K T P
L A V S - R V M - F V F F I S F - K P L
V L Q F P D E L C N L F F L L V F K N P
. . . . . .
16569 CCCGACATCCTTCCGACATATCCGATGTGACCTAAAAAATTTTCATCTTCAATCTAAACA
P D I L P T Y P M - P K K F S S S I - T
P T S F R H I R C D L K N F H L Q S K H
S R H P S D I S D V T - K I F I F N L N
.
16509 TGCCCTAA
C P
A L
M P -
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-6 (17037 16939,16679 16626)
SCR (e 0.717 d 0.000 a 0.000,e 0.759)
Exon 1 17037 16939 ( 99 n); score: 0.717
Intron 1 16938 16680 ( 259 n); Pd: 0.000 Pa: 0.000
Exon 2 16679 16626 ( 54 n); score: 0.759
PGS (17037 16939,16679 16626) 15856972+
3-phase translation of AGS-6 (-strand):
. . . . . .
17037 CATTAAATATATACAAAAATAAAAACTAATTGCACAGTTTACCTATAAATCGCGAGATAA
H - I Y T K I K T N C T V Y L - I A R -
I K Y I Q K - K L I A Q F T Y K S R D K
L N I Y K N K N - L H S L P I N R E I
. . . . : . .
16977 ATCTTTTAAACCTAGTTACTCTATGATTAGACAATATTT : ACAGTAACCCACATGTGCTAA
I F - T - L L Y D - T I F : T V T H M C -
S F K P S Y S M I R Q Y L : Q - P T C A N
N L L N L V T L - L D N I : Y S N P H V L
. . . .
16658 TAATAGATTAATTATACTTAATAGATTCGTCTT
- - I N Y T - - I R L
N R L I I L N R F V
I I D - L Y L I D S S
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-7 (17100 16511)
SCR (e 0.850)
Exon 1 17100 16511 ( 590 n); score: 0.850
PGS (16843 16511) 9855330-
PGS (16853 16544) 4714617+
PGS (16839 16544) 20553288+
PGS (16845 16586) 25805794+
PGS (16843 16623) 6674009-
PGS (17100 16825) 12775389+
PGS (17038 16830) 7219249+
PGS (17091 16843) 11678487-
3-phase translation of AGS-7 (-strand):
. . . . . .
17100 CCCAAAAACCAAAAACTTTTCAAAATTTCTCAACACATCAAATATTACGACACATGCATG
P K N Q K L F K I S Q H I K Y Y D T C M
P K T K N F S K F L N T S N I T T H A -
Q K P K T F Q N F S T H Q I L R H M H
. . . . . .
17040 AAGCATTAAATATATACAAAAATAAAAACTAATTGCACAGTTTACCTATAAATCGCGAGA
K H - I Y T K I K T N C T V Y L - I A R
S I K Y I Q K - K L I A Q F T Y K S R D
E A L N I Y K N K N - L H S L P I N R E
. . . . . .
16980 TAAATCTTTTAAACCTAGTTACTCTATGATTAGACAATATTTGTCAAATAAAAACGAAAG
- I F - T - L L Y D - T I F V K - K R K
K S F K P S Y S M I R Q Y L S N K N E S
I N L L N L V T L - L D N I C Q I K T K
. . . . . .
16920 TGCTACAGTCTCAAAAACCAAAAAGTTTTCGAAACTAAACAAGGCCTGACACTTGCACAT
C Y S L K N Q K V F E T K Q G L T L A H
A T V S K T K K F S K L N K A - H L H I
V L Q S Q K P K S F R N - T R P D T C T
. . . . . .
16860 CTTTTTTAAAAAATATAAGGCCCTGTTTAGTTCCCACCTAAAAAATTTTCATCCATCACA
L F - K I - G P V - F P P K K F S S I T
F F K K Y K A L F S S H L K N F H P S H
S F L K N I R P C L V P T - K I F I H H
. . . . . .
16800 TTGAATCTTTAGACACATACATAAAACATTAAATGTAGATAAAAAATAATTACACAGTTT
L N L - T H T - N I K C R - K I I T Q F
- I F R H I H K T L N V D K K - L H S L
I E S L D T Y I K H - M - I K N N Y T V
. . . . . .
16740 GGTTGAAAATCGCGAGATGAATTTTTTAAGCCTAGTTAGTCCATGATTAGCCTTAAGTGC
G - K S R D E F F K P S - S M I S L K C
V E N R E M N F L S L V S P - L A L S A
W L K I A R - I F - A - L V H D - P - V
. . . . . .
16680 TACAGTAACCCACATGTGCTAATAATAGATTAATTATACTTAATAGATTCGTCTTGCAGT
Y S N P H V L I I D - L Y L I D S S C S
T V T H M C - - - I N Y T - - I R L A V
L Q - P T C A N N R L I I L N R F V L Q
. . . . . .
16620 TTCCTGACGAGTTATGTAATTTGTTTTTTTTATTAGTTTTTAAAAACCCCTCCCGACATC
F L T S Y V I C F F Y - F L K T P P D I
S - R V M - F V F F I S F - K P L P T S
F P D E L C N L F F L L V F K N P S R H
. . . . .
16560 CTTCCGACATATCCGATGTGACCTAAAAAATTTTCATCTTCAATCTAAAC
L P T Y P M - P K K F S S S I -
F R H I R C D L K N F H L Q S K
P S D I S D V T - K I F I F N L N
Maximal non-overlapping open reading frames (>= 64 codons):
none
3-phase translation of AGS-7 (+strand):
. . . . . .
16511 GTTTAGATTGAAGATGAAAATTTTTTAGGTCACATCGGATATGTCGGAAGGATGTCGGGA
V - I E D E N F L G H I G Y V G R M S G
F R L K M K I F - V T S D M S E G C R E
L D - R - K F F R S H R I C R K D V G
. . . . . .
16571 GGGGTTTTTAAAAACTAATAAAAAAAACAAATTACATAACTCGTCAGGAAACTGCAAGAC
G V F K N - - K K Q I T - L V R K L Q D
G F L K T N K K N K L H N S S G N C K T
R G F - K L I K K T N Y I T R Q E T A R
. . . . . .
16631 GAATCTATTAAGTATAATTAATCTATTATTAGCACATGTGGGTTACTGTAGCACTTAAGG
E S I K Y N - S I I S T C G L L - H L R
N L L S I I N L L L A H V G Y C S T - G
R I Y - V - L I Y Y - H M W V T V A L K
. . . . . .
16691 CTAATCATGGACTAACTAGGCTTAAAAAATTCATCTCGCGATTTTCAACCAAACTGTGTA
L I M D - L G L K N S S R D F Q P N C V
- S W T N - A - K I H L A I F N Q T V -
A N H G L T R L K K F I S R F S T K L C
. . . . . .
16751 ATTATTTTTTATCTACATTTAATGTTTTATGTATGTGTCTAAAGATTCAATGTGATGGAT
I I F Y L H L M F Y V C V - R F N V M D
L F F I Y I - C F M Y V S K D S M - W M
N Y F L S T F N V L C M C L K I Q C D G
. . . . . .
16811 GAAAATTTTTTAGGTGGGAACTAAACAGGGCCTTATATTTTTTAAAAAAGATGTGCAAGT
E N F L G G N - T G P Y I F - K R C A S
K I F - V G T K Q G L I F F K K D V Q V
- K F F R W E L N R A L Y F L K K M C K
. . . . . .
16871 GTCAGGCCTTGTTTAGTTTCGAAAACTTTTTGGTTTTTGAGACTGTAGCACTTTCGTTTT
V R P C L V S K T F W F L R L - H F R F
S G L V - F R K L F G F - D C S T F V F
C Q A L F S F E N F L V F E T V A L S F
. . . . . .
16931 TATTTGACAAATATTGTCTAATCATAGAGTAACTAGGTTTAAAAGATTTATCTCGCGATT
Y L T N I V - S - S N - V - K I Y L A I
I - Q I L S N H R V T R F K R F I S R F
L F D K Y C L I I E - L G L K D L S R D
. . . . . .
16991 TATAGGTAAACTGTGCAATTAGTTTTTATTTTTGTATATATTTAATGCTTCATGCATGTG
Y R - T V Q L V F I F V Y I - C F M H V
I G K L C N - F L F L Y I F N A S C M C
L - V N C A I S F Y F C I Y L M L H A C
. . . . .
17051 TCGTAATATTTGATGTGTTGAGAAATTTTGAAAAGTTTTTGGTTTTTGGG
S - Y L M C - E I L K S F W F L
R N I - C V E K F - K V F G F W
V V I F D V L R N F E K F L V F G
Maximal non-overlapping open reading frames (>= 64 codons):
none
PGL 4 (+ strand): 18165 22500
AGS-1 (18165 18218,18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500)
SCR (e 0.778 d 0.941 a 0.878,e 0.742 d 0.993 a 0.998,e 0.852 d 0.980 a 0.787,e 0.956 d 0.000 a 0.953,e 1.000 d 0.984 a 0.000,e 1.000 d 0.770 a 0.962,e 1.000 d 0.929 a 0.999,e 0.962 d 0.992 a 0.998,e 0.944 d 0.596 a 0.894,e 0.878)
Exon 1 18165 18218 ( 54 n); score: 0.778
Intron 1 18219 18328 ( 110 n); Pd: 0.941 Pa: 0.878
Exon 2 18329 18417 ( 89 n); score: 0.742
Intron 2 18418 18626 ( 209 n); Pd: 0.993 Pa: 0.998
Exon 3 18627 18734 ( 108 n); score: 0.852
Intron 3 18735 18859 ( 125 n); Pd: 0.980 Pa: 0.787
Exon 4 18860 18967 ( 108 n); score: 0.956
Intron 4 18968 19065 ( 98 n); Pd: 0.000 Pa: 0.953
Exon 5 19066 19156 ( 91 n); score: 1.000
Intron 5 19157 19270 ( 114 n); Pd: 0.984 Pa: 0.000
Exon 6 19271 19323 ( 53 n); score: 1.000
Intron 6 19324 20843 (1520 n); Pd: 0.770 Pa: 0.962
Exon 7 20844 20906 ( 63 n); score: 1.000
Intron 7 20907 21626 ( 720 n); Pd: 0.929 Pa: 0.999
Exon 8 21627 21671 ( 45 n); score: 0.962
Intron 8 21672 21777 ( 106 n); Pd: 0.992 Pa: 0.998
Exon 9 21778 21813 ( 36 n); score: 0.944
Intron 9 21814 22451 ( 638 n); Pd: 0.596 Pa: 0.894
Exon 10 22452 22500 ( 49 n); score: 0.878
PGS (18165 18218,18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500) 2352083+
PGS (18165 18218,18329 18417,18627 18734,18860 18967,19066 19156,19271 19317) 13613476+
PGS (18165 18218,18329 18417,18627 18734,18860 18967,19066 19135) 21922100+
PGS (18169 18218,18329 18417,18627 18734,18860 18967,19066 19106) 17069519+
PGS (18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500) 22136893+
PGS (18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500) 18176307+
PGS (18660 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500) 13615373+
PGS (18660 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500) 13610520+
PGS (18854 18967,19066 19156,19271 19323,20844 20906,21627 21652) 13316811+
PGS (18917 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22500) 13263258+
PGS (18864 18887) 11931938+
PGS (18864 18887) 10698690+
PGS (19281 19323,20844 20910) 12047395+
3-phase translation of AGS-1 (+strand):
. . . . . . :
18165 ACAGTGTTACCAGAGAGGATCCTTCCACCAAGTACGAGCTGCTCCATGAGCTTG : GGAAAG
T V L P E R I L P P S T S C S M S L : G K
Q C Y Q R G S F H Q V R A A P - A W : E R
S V T R E D P S T K Y E L L H E L : G K
. . . . . .
18335 GCTCATATGGTGCAGTGTACAAAGCAAGGGATCTCAGAACGCAGGAGCTTGTGGCTGTCA
A H M V Q C T K Q G I S E R R S L W L S
L I W C S V Q S K G S Q N A G A C G C Q
G S Y G A V Y K A R D L R T Q E L V A V
. . . : . . .
18395 AGATTATCTCACTAACAGAAGGG : GAAGAAGGATATGAAGACATACGGGGAGAAATTGAGA
R L S H - Q K G : K K D M K T Y G E K L R
D Y L T N R R : G R R I - R H T G R N - D
K I I S L T E G : E E G Y E D I R G E I E
. . . . . .
18664 TGCTGCAGCAGTGTAGCCATCCAAATGTTGTCCGCTACTTTGGAAGCTACCAAGGAGAGG
C C S S V A I Q M L S A T L E A T K E R
A A A V - P S K C C P L L W K L P R R G
M L Q Q C S H P N V V R Y F G S Y Q G E
. . : . . . .
18724 ACTACCTATGG : ATAGTTATGGAGTACTGTGGTGGTGGAAGTGTTGCTGATTTGATAGGCA
T T Y G : - L W S T V V V E V L L I - - A
L P M : D S Y G V L W W W K C C - F D R H
D Y L W : I V M E Y C G G G S V A D L I G
. . . . . . :
18909 TCACAGAGGAGCCTCTTGATGAATCCCAAATAGCTTATATATGTAGAGAAGCACTAAAG : G
S Q R S L L M N P K - L I Y V E K H - R :
H R G A S - - I P N S L Y M - R S T K : G
I T E E P L D E S Q I A Y I C R E A L K :
. . . . . .
19067 GCCTTGCTTACCTGCACTCCATTTTTAAAGTTCATAGAGATATTAAGGGTGGCAACATTC
A L L T C T P F L K F I E I L R V A T F
P C L P A L H F - S S - R Y - G W Q H S
G L A Y L H S I F K V H R D I K G G N I
. . . : . . .
19127 TTCTAACTGAGCAAGGCGAGGTGAAGTTGG : GTGATTTTGGTGTAGCTGCCCAGCTGACAA
F - L S K A R - S W : V I L V - L P S - Q
S N - A R R G E V G : - F W C S C P A D K
L L T E Q G E V K L : G D F G V A A Q L T
. . . : . . .
19301 GAACCATGTCAAAGCGCAACACG : TTCATTGGTACTCCACATTGGATGGCACCAGAGGTCA
E P C Q S A T R : S L V L H I G W H Q R S
N H V K A Q H : V H W Y S T L D G T R G H
R T M S K R N T : F I G T P H W M A P E V
. . . : . . .
20881 TTCAAGAAAGTCGTTATGATGGAAAG : GTAGATGTTTGGGCATTAGGTGTATCTGCAATTG
F K K V V M M E R : - M F G H - V Y L Q L
S R K S L - W K : G R C L G I R C I C N -
I Q E S R Y D G K : V D V W A L G V S A I
. . : . . . : .
21661 AGATGGCAGAG : GGCATGCCACCAAGATCCACTGTACATCCAATGAGA : GTTATCTTCATGA
R W Q R : A C H Q D P L Y I Q - E : L S S -
D G R : G H A T K I H C T S N E : S Y L H D
E M A E : G M P P R S T V H P M R : V I F M
. . . .
22465 TATCCAGTGAACCAGCACCAATGCTGGAGGATAAGG
Y P V N Q H Q C W R I R
I Q - T S T N A G G -
I S S E P A P M L E D K
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-4_AGS-1_PPS_1 (18167 18218,18329 18417,18627 18734,18860 18967,19066 19156,19271 19323,20844 20906,21627 21671,21778 21813,22452 22499) (frame '0'; 693 bp, 231 residues)
1 SVTREDPSTK YELLHELGKG SYGAVYKARD LRTQELVAVK IISLTEGEEG YEDIRGEIEM
61 LQQCSHPNVV RYFGSYQGED YLWIVMEYCG GGSVADLIGI TEEPLDESQI AYICREALKG
121 LAYLHSIFKV HRDIKGGNIL LTEQGEVKLG DFGVAAQLTR TMSKRNTFIG TPHWMAPEVI
181 QESRYDGKVD VWALGVSAIE MAEGMPPRST VHPMRVIFMI SSEPAPMLED K
NCBI Blastp
AGS-2 (18165 18218,18329 18417,18627 18734,18860 18967,19271 19323,20844 20906,21627 21671,21778 21813)
SCR (e 0.778 d 0.941 a 0.878,e 0.663 d 0.993 a 0.998,e 0.843 d 0.980 a 0.787,e 0.769 d 0.000 a 0.000,e 0.887 d 0.770 a 0.962,e 0.889 d 0.929 a 0.999,e 0.800 d 0.992 a 0.998,e 0.694)
Exon 1 18165 18218 ( 54 n); score: 0.778
Intron 1 18219 18328 ( 110 n); Pd: 0.941 Pa: 0.878
Exon 2 18329 18417 ( 89 n); score: 0.663
Intron 2 18418 18626 ( 209 n); Pd: 0.993 Pa: 0.998
Exon 3 18627 18734 ( 108 n); score: 0.843
Intron 3 18735 18859 ( 125 n); Pd: 0.980 Pa: 0.787
Exon 4 18860 18967 ( 108 n); score: 0.769
Intron 4 18968 19270 ( 303 n); Pd: 0.000 Pa: 0.000
Exon 5 19271 19323 ( 53 n); score: 0.887
Intron 5 19324 20843 (1520 n); Pd: 0.770 Pa: 0.962
Exon 6 20844 20906 ( 63 n); score: 0.889
Intron 6 20907 21626 ( 720 n); Pd: 0.929 Pa: 0.999
Exon 7 21627 21671 ( 45 n); score: 0.800
Intron 7 21672 21777 ( 106 n); Pd: 0.992 Pa: 0.998
Exon 8 21778 21813 ( 36 n); score: 0.694
PGS (18165 18218,18329 18417,18627 18734,18860 18967,19271 19323,20844 20906,21627 21671,21778 21813) 20172268+
PGS (18165 18218,18329 18417,18627 18734,18860 18967,19271 19323,20844 20906,21627 21671) 13607727+
3-phase translation of AGS-2 (+strand):
. . . . . . :
18165 ACAGTGTTACCAGAGAGGATCCTTCCACCAAGTACGAGCTGCTCCATGAGCTTG : GGAAAG
T V L P E R I L P P S T S C S M S L : G K
Q C Y Q R G S F H Q V R A A P - A W : E R
S V T R E D P S T K Y E L L H E L : G K
. . . . . .
18335 GCTCATATGGTGCAGTGTACAAAGCAAGGGATCTCAGAACGCAGGAGCTTGTGGCTGTCA
A H M V Q C T K Q G I S E R R S L W L S
L I W C S V Q S K G S Q N A G A C G C Q
G S Y G A V Y K A R D L R T Q E L V A V
. . . : . . .
18395 AGATTATCTCACTAACAGAAGGG : GAAGAAGGATATGAAGACATACGGGGAGAAATTGAGA
R L S H - Q K G : K K D M K T Y G E K L R
D Y L T N R R : G R R I - R H T G R N - D
K I I S L T E G : E E G Y E D I R G E I E
. . . . . .
18664 TGCTGCAGCAGTGTAGCCATCCAAATGTTGTCCGCTACTTTGGAAGCTACCAAGGAGAGG
C C S S V A I Q M L S A T L E A T K E R
A A A V - P S K C C P L L W K L P R R G
M L Q Q C S H P N V V R Y F G S Y Q G E
. . : . . . .
18724 ACTACCTATGG : ATAGTTATGGAGTACTGTGGTGGTGGAAGTGTTGCTGATTTGATAGGCA
T T Y G : - L W S T V V V E V L L I - - A
L P M : D S Y G V L W W W K C C - F D R H
D Y L W : I V M E Y C G G G S V A D L I G
. . . . . . :
18909 TCACAGAGGAGCCTCTTGATGAATCCCAAATAGCTTATATATGTAGAGAAGCACTAAAG : G
S Q R S L L M N P K - L I Y V E K H - R :
H R G A S - - I P N S L Y M - R S T K : G
I T E E P L D E S Q I A Y I C R E A L K :
. . . . . . :
19272 TGATTTTGGTGTAGCTGCCCAGCTGACAAGAACCATGTCAAAGCGCAACACG : TTCATTGG
- F W C S C P A D K N H V K A Q H : V H W
D F G V A A Q L T R T M S K R N T : F I G
V I L V - L P S - Q E P C Q S A T R : S L
. . . . . . :
20852 TACTCCACATTGGATGGCACCAGAGGTCATTCAAGAAAGTCGTTATGATGGAAAG : GTAGA
Y S T L D G T R G H S R K S L - W K : G R
T P H W M A P E V I Q E S R Y D G K : V D
V L H I G W H Q R S F K K V V M M E R : -
. . . . : . .
21632 TGTTTGGGCATTAGGTGTATCTGCAATTGAGATGGCAGAG : GGCATGCCACCAAGATCCAC
C L G I R C I C N - D G R : G H A T K I H
V W A L G V S A I E M A E : G M P P R S T
M F G H - V Y L Q L R W Q R : A C H Q D P
. .
21798 TGTACATCCAATGAGA
C T S N E
V H P M R
L Y I Q -
Maximal non-overlapping open reading frames (>= 64 codons):
>21326110+_PGL-4_AGS-2_PPS_1 (18167 18218,18329 18417,18627 18734,18860 18967,19271 19285) (frame '0'; 369 bp, 123 residues)
1 SVTREDPSTK YELLHELGKG SYGAVYKARD LRTQELVAVK IISLTEGEEG YEDIRGEIEM
61 LQQCSHPNVV RYFGSYQGED YLWIVMEYCG GGSVADLIGI TEEPLDESQI AYICREALKV
121 ILV-
NCBI Blastp
>21326110+_PGL-4_AGS-2_PPS_2 (18955 18967,19271 19323,20844 20906,21627 21671,21778 21813) (frame '2'; 210 bp, 70 residues)
1 RSTKGDFGVA AQLTRTMSKR NTFIGTPHWM APEVIQESRY DGKVDVWALG VSAIEMAEGM
61 PPRSTVHPMR
NCBI Blastp
AGS-3 (21266 21345,21414 21440,21646 21671)
SCR (e 0.775 d 0.000 a 0.000,e 0.741 d 0.000 a 0.848,e 0.692)
Exon 1 21266 21345 ( 80 n); score: 0.775
Intron 1 21346 21413 ( 68 n); Pd: 0.000 Pa: 0.000
Exon 2 21414 21440 ( 27 n); score: 0.741
Intron 2 21441 21645 ( 205 n); Pd: 0.000 Pa: 0.848
Exon 3 21646 21671 ( 26 n); score: 0.692
PGS (21266 21345,21414 21440,21646 21671) 27547907+
3-phase translation of AGS-3 (+strand):
. . . . . .
21266 GGATGAAAACGGATCGGATACGGACGGATATCATCGATATCATATTTGTTTTCGTATTTC
G - K R I G Y G R I S S I S Y L F S Y F
D E N G S D T D G Y H R Y H I C F R I S
M K T D R I R T D I I D I I F V F V F
. . : . . . : .
21326 TGGTCGAATTCGGATTCGAA : TACTCGGATACGGATACGGTATCGGAT : GTGTATCTGCAAT
W S N S D S N : T R I R I R Y R M : C I C N
G R I R I R : I L G Y G Y G I G : C V S A I
L V E F G F E : Y S D T D T V S D : V Y L Q
. .
21659 TGAGATGGCAGAG
- D G R
E M A E
L R W Q
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-4 (21285 21538,21646 21671)
SCR (e 0.886 d 0.000 a 0.848,e 0.615)
Exon 1 21285 21538 ( 254 n); score: 0.886
Intron 1 21539 21645 ( 107 n); Pd: 0.000 Pa: 0.848
Exon 2 21646 21671 ( 26 n); score: 0.615
PGS (21477 21538,21646 21671) 11409274-
PGS (21285 21538) 7217281-
PGS (21375 21535) 9299315-
3-phase translation of AGS-4 (+strand):
. . . . . .
21285 ACGGACGGATATCATCGATATCATATTTGTTTTCGTATTTCTGGTCGAATTCGGATTCGA
T D G Y H R Y H I C F R I S G R I R I R
R T D I I D I I F V F V F L V E F G F E
G R I S S I S Y L F S Y F W S N S D S
. . . . . .
21345 ATACGGATAATGTCAACTATATCGGATAAGATACGATTGGATGTCGACATCATAAATATA
I R I M S T I S D K I R L D V D I I N I
Y G - C Q L Y R I R Y D W M S T S - I Y
N T D N V N Y I G - D T I G C R H H K Y
. . . . . .
21405 TGATTTAAGTACTCGGATACGGATACGGTATCGGATGTAGAACATTCGAACTCGGATACG
- F K Y S D T D T V S D V E H S N S D T
D L S T R I R I R Y R M - N I R T R I R
M I - V L G Y G Y G I G C R T F E L G Y
. . . . . .
21465 AACTGGTCTGAATCCCTCTAAACGAATTCGGTCTCAAATACGGTCGGAAAATATCCGTAC
N W S E S L - T N S V S N T V G K Y P Y
T G L N P S K R I R S Q I R S E N I R T
E L V - I P L N E F G L K Y G R K I S V
. . : . .
21525 CGTTTTCATCCCTA : GTGTATCTGCAATTGAGATGGCAGAG
R F H P - : C I C N - D G R
V F I P : S V S A I E M A E
P F S S L : V Y L Q L R W Q
Maximal non-overlapping open reading frames (>= 64 codons):
none
AGS-5 (21266 21406)
SCR (e 0.851)
Exon 1 21266 21406 ( 141 n); score: 0.851
PGS (21266 21406) 13239349+
3-phase translation of AGS-5 (+strand):
. . . . . .
21266 GGATGAAAACGGATCGGATACGGACGGATATCATCGATATCATATTTGTTTTCGTATTTC
G - K R I G Y G R I S S I S Y L F S Y F
D E N G S D T D G Y H R Y H I C F R I S
M K T D R I R T D I I D I I F V F V F
. . . . . .
21326 TGGTCGAATTCGGATTCGAATACGGATAATGTCAACTATATCGGATAAGATACGATTGGA
W S N S D S N T D N V N Y I G - D T I G
G R I R I R I R I M S T I S D K I R L D
L V E F G F E Y G - C Q L Y R I R Y D W
. . .
21386 TGTCGACATCATAAATATATG
C R H H K Y M
V D I I N I
M S T S - I Y
Maximal non-overlapping open reading frames (>= 64 codons):
none
3-phase translation of AGS-5 (-strand):
. . . . . .
21406 CATATATTTATGATGTCGACATCCAATCGTATCTTATCCGATATAGTTGACATTATCCGT
H I F M M S T S N R I L S D I V D I I R
I Y L - C R H P I V S Y P I - L T L S V
Y I Y D V D I Q S Y L I R Y S - H Y P
. . . . . .
21346 ATTCGAATCCGAATTCGACCAGAAATACGAAAACAAATATGATATCGATGATATCCGTCC
I R I R I R P E I R K Q I - Y R - Y P S
F E S E F D Q K Y E N K Y D I D D I R P
Y S N P N S T R N T K T N M I S M I S V
. . .
21286 GTATCCGATCCGTTTTCATCC
V S D P F S S
Y P I R F H
R I R S V F I
Maximal non-overlapping open reading frames (>= 64 codons):
none