TEnest - Annotation and Visualization of Nested Transposable Elements

TE Nest is being re-installed at PlantGDB, but it is not yet functional. We apologize for the inconvenience. 2-8-2013.

TEnest is an annotation and visualization tool for the identification transposable elements. TEnest is unique in that it reconstructs transposable elements separated by nesting of subsequent insertions.

There are two parts to TEnest, the annotation tool (TEnest) and the visualization tool (svg_ltr).

Run TEnest

TEnest: Input sequence file to get annotations. This will allow you to run TEnest and svg_ltr on your input sequence. Results will be emailed.

svg_ltr: Input annotation file to view graphical display. Run svg_ltr on previous TEnest annotation files. Results will be emailed.

Instructions for using TEnest and svg_ltr.

You must use Firefox version 1.5 or later to view the svg_ltr output.

Brent Kronmiller, 2006 bkronmil@mendelbio.com
Wiselab homepage: wiselab


Visual example #1 Visual example #2

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