PlantGDB-assembled Unique Transcript (PUT) Assembly Data

PlantGDB builds a new transcript assembly for all plant species with >10,000 EST or with a significant increase in EST since the last assembly. New or refreshed assemblies are run 3 times per year (after every other GenBank release). Researchers are invited to request a custom EST assembly for any species of interest that does not meet the above criteria.

To download a PUT assembly, click the species name in the table below. For more assembly data, click "detail". You can also access tables for Vector Contamination, Bacterial Contamination, and Repeat sequence data by species.

Plant Species GenBank EST + cDNA PlantGDB assembly (detail)
Total available Currently assembled Total # of PUTs Date Version
Actinidia chinensis47,41947,41018,7342008-09-11167a
Actinidia deliciosa57,84757,81824,9812008-09-11167a
Actinidia eriantha12,66012,6555,2822008-09-11167a
Adiantum capillus-veneris (maidenhair fern)30,56130,49016,9442009-06-11171a
Agrostis stolonifera13,68613,6859,0392009-09-24173a
Allium cepa (onion)20,26120,25112,9902007-08-31161a
Amborella trichopoda26,39526,39515,7722008-05-5165a
Antirrhinum majus (snapdragon)25,44625,07013,8012007-01-10157a
Aquilegia formosa x Aquilegia pubescens85,04085,04019,6152007-01-10157a
Arabidopsis thaliana (thale cress)1,605,3301,567,359543,4502009-01-18169a
Arachis hypogaea85,79085,61430,3912009-06-11171a
Aristolochia fimbriata16,45116,4517,9672008-05-5165a
Artemisia annua85,49385,34924,9632008-01-25163a
Avena barbata54,24254,24221,3602009-09-24173a
Avena sativa (oat)25,42925,42313,4992009-09-21173a
Barnadesia spinosa28,48328,48321,8112009-01-8169a
Beta vulgaris (beet)26,99925,88318,0092007-01-15157a
Brachypodium distachyon128,098128,09830,9912010-01-13175a
Brassica napus (rape)644,564632,919145,0022009-09-29173a
Brassica oleracea26,94626,92512,8432008-01-30163a
Brassica oleracea var. alboglabra30,77830,76713,5132007-06-15159a
Brassica rapa (field mustard)194,655183,60044,9982009-06-11171a
Bruguiera gymnorhiza (burma mangrove)22,50022,50013,3322010-01-13175a
Cajanus cajan11,26910,8286,0332009-09-24173a
Capsicum annuum (chilli pepper)117,149117,09632,3362009-06-12171a
Carica papaya77,52177,25542,1692008-09-11167a
Carthamus tinctorius41,33541,01622,4282007-06-15159a
Catharanthus roseus20,51220,4609,6752008-05-5165a
Cenchrus ciliaris21,75021,73712,3642008-05-5165a
Centaurea maculosa44,88744,62028,5062007-09-2161a
Centaurea solstitialis40,40740,40726,4962009-01-13169a
Ceratopteris richardii5,1795,1784,2342007-01-16157a
Chlamydomonas reinhardtii204,799202,67650,3802008-01-30163a
Chlorella sp. NC64A23,83123,8298,1272009-01-8169a
Cicer arietinum34,50834,34914,3862010-01-13175a
Cichorium endivia30,17230,17121,6032007-06-15159a
Cichorium intybus54,01954,01832,6172009-06-10171a
Citrus aurantium14,58713,66811,4272008-09-11167a
Citrus clementina118,372118,35339,4682009-06-10171a
Citrus limonia11,04511,0459,8572009-09-25173a
Citrus reticulata55,98655,32446,8762008-09-11167a
Citrus sinensis (sweet orange)209,082203,890105,2942008-09-12167a
Citrus trifoliata62,39362,34435,1302009-09-24173a
Citrus unshiu19,15119,13910,4892009-01-8169a
Coffea arabica (arabica coffee)43,78543,78510,0132010-01-13175a
Coffea canephora (robusta coffee)55,79455,74920,1682007-01-16157a
Cryptomeria japonica56,70456,70324,2992008-09-13167a
Cucumis melo subsp. melo22,68322,68313,6922008-01-25163a
Cucumis sativus8,5788,4635,7992010-01-15175a
Curcuma longa12,59812,5936,6272007-01-16157a
Cyamopsis tetragonoloba16,48216,4817,6182007-01-16157a
Cycas rumphii21,99721,75710,9012008-01-25163a
Cynara scolymus36,33136,32620,9112009-01-8169a
Cynodon dactylon20,19220,03012,7822009-01-8169a
Elaeis guineensis37,73137,59420,8742009-06-10171a
Elymus wawawaiensis/Elymus lanceolatus mixed EST library17,68917,6898,7822009-01-8169a
Eragrostis curvula12,29512,29510,9482008-05-5165a
Eucalyptus globulus10,81310,0325,8852008-01-25163a
Eucalyptus gunnii19,85319,8198,1712008-05-6165a
Euphorbia esula (leafy spurge)47,59147,58327,9942007-01-16157a
Festuca arundinacea (tall fescue)63,79563,79332,6502010-01-14175a
Festuca pratensis74,12574,12436,0072009-09-24173a
Fragaria vesca44,90742,74811,5272008-01-30163a
Fragaria x ananassa10,04710,0418,6322010-01-14175a
Gerbera hybrid cultivar17,04117,0409,6602009-06-10171a
Ginkgo biloba21,68621,33310,2102009-01-14169a
Glycine max (soybean)1,439,8021,379,625259,8492009-01-15169a
Glycine soja (wild soybean)18,54818,52311,3322007-01-17157a
Glycyrrhiza uralensis50,68750,67412,0202009-09-25173a
Gnetum gnemon10,75310,4306,1932008-01-25163a
Gossypium arboreum (tree cotton)41,81939,26124,5972007-01-23157a
Gossypium hirsutum (upland cotton)269,733266,57998,4202008-05-8165a
Gossypium raimondii63,58563,58327,3552007-01-23157a
Guizotia abyssinica25,71125,71120,5792009-01-12169a
Helianthus annuus (common sunflower)134,042134,02461,1752009-01-14169a
Helianthus argophyllus35,72134,65520,5112007-01-24157a
Helianthus ciliaris21,59021,59016,3532007-06-15159a
Helianthus exilis33,96132,82721,7762007-01-24157a
Helianthus paradoxus30,51730,51720,6452007-06-15159a
Helianthus petiolaris27,48427,48414,8852007-01-24157a
Helianthus tuberosus40,39640,39425,7082007-06-15159a
Hevea brasiliensis11,97111,0233,8492007-01-24157a
Hordeum vulgare (barley)522,561531,159134,4822009-01-17169a
Humulus lupulus25,53725,5169,7892008-12-2168a
Ipomoea batatas22,63122,61012,4642009-01-14169a
Ipomoea nil (Japanese morning glory)62,43262,36922,9462007-01-24157a
Jatropha curcas13,27413,2686,9962010-01-14175a
Juglans hindsii x Juglans regia13,55912,7947,7532007-06-15159a
Lactuca perennis29,12629,12512,7472007-01-24157a
Lactuca saligna30,70430,69612,1862007-01-24157a
Lactuca sativa (garden lettuce)80,91980,87029,9772007-01-24157a
Lactuca serriola55,49755,49022,9572007-01-24157a
Lactuca virosa30,07430,06812,8392007-01-24157a
Leymus cinereus x Leymus triticoides28,78728,78613,5672008-01-25163a
Limnanthes alba15,33215,3324,3592008-05-6165a
Linum usitatissimum10,32110,2767,9212008-09-13167a
Liriodendron tulipifera24,14324,14214,2322008-05-6165a
Lotus japonicus195,721195,66653,7902009-06-10171a
Malus x domestica (apple)324,980324,76489,1582009-10-1173a
Manihot esculenta (cassava)80,54776,64930,4012008-05-7165a
Marchantia polymorpha (liverwort)33,75833,71710,9592007-01-24157a
Medicago sativa (alfalfa)11,54011,4016,1042008-01-30163a
Medicago truncatula (barrel medic)273,376264,18665,6282009-01-15169a
Mesembryanthemum crystallinum (common iceplant)27,56327,55311,3172007-01-24157a
Mesostigma viride16,02515,9407,3712007-01-25157a
Mimulus guttatus (spotted monkey flower)231,101231,01239,5772009-09-23173a
Mimulus guttatus var. nasutus30,81230,8129,4692010-01-14175a
Mimulus lewisii17,71817,7189,9502010-01-14175a
Musa ABB Group11,07411,0435,1672009-01-13169a
Musa acuminata5,6445,6444,5102010-01-15175a
Nicotiana benthamiana56,40956,34625,2972009-09-24173a
Nicotiana langsdorffii x Nicotiana sanderae12,54312,4996,7912007-01-25157a
Nicotiana sylvestris8,6828,6547,6122008-03-27163a
Nicotiana tabacum (common tobacco)320,974317,756131,9422009-09-24173a
Nuphar advena20,59620,59613,7892008-05-8165a
Ocimum basilicum23,28623,2538,9262007-01-25157a
Oryza sativa (rice)63,31962,32844,6442008-03-13163a
Oryza sativa Indica Group213,419213,14292,9002009-06-10171a
Oryza sativa Japonica Group1,024,9651,015,010146,6422008-03-12163a
Ostreococcus lucimarinus CCE990117,59217,59213,9402007-08-31161a
Panicum virgatum (switchgrass)436,550436,535101,0772009-01-13169a
Papaver somniferum20,38420,38216,4862008-09-13167a
Paullinia cupana var. sorbilis14,88814,88510,6722008-09-13167a
Persea americana16,60616,60310,9282008-05-6165a
Petunia axillaris subsp. axillaris47,48547,48519,6092009-09-25173a
Petunia x hybrida14,36214,2849,8842007-06-14159a
Phaseolus angustissimus10,27210,2723,4992008-05-6165a
Phaseolus coccineus391,153352,161221,9032010-01-21175a
Phaseolus vulgaris (kidney bean)84,21277,09321,3612008-05-6165a
Phyllostachys edulis13,73713,70010,9542010-01-15175a
Physcomitrella patens383,065382,89160,3952009-01-12169a
Picea abies14,47914,4788,7152010-01-14175a
Picea engelmannii x Picea glauca28,18228,17913,8802007-01-26157a
Picea glauca (white spruce)321,191321,19048,6192010-01-19175a
Picea sitchensis (Sitka spruce)186,164186,16131,0542010-01-21175a
Pinus contorta41,13641,13613,5702010-01-19175a
Pinus pinaster (cluster pine)28,72827,29412,9012007-01-26157a
Pinus taeda (loblolly pine)329,024329,58472,8292007-01-26157a
Pisum sativum19,54419,4271,2332010-01-19175a
Populus deltoides14,68714,6638,1862008-01-25163a
Populus euphratica14,03013,9259,1172008-01-25163a
Populus nigra (black poplar)51,40251,39932,7182008-01-27163a
Populus tremula (European aspen)37,32437,31919,6332008-01-31163a
Populus tremula x Populus alba27,11127,03615,9462009-01-14169a
Populus tremula x Populus tremuloides76,28576,26735,1282007-01-27157a
Populus tremuloides (quaking aspen)12,91112,8655,7302007-01-27157a
Populus trichocarpa (western balsam poplar)94,29790,07929,6822007-01-27157a
Populus trichocarpa x Populus deltoides55,90155,22323,6862007-01-27157a
Populus trichocarpa x Populus nigra20,14220,1309,7402007-01-27157a
Populus x canadensis (Canadian poplar)10,20310,1944,9402007-01-27157a
Prunus armeniaca (apricot)15,20515,1905,6372007-01-27157a
Prunus persica (peach)79,43379,24428,4752009-06-11171a
Pseudoroegneria spicata27,89127,89110,1682009-01-13169a
Pseudotsuga menziesii var. menziesii14,35414,3539,8572007-09-3161a
Quercus petraea12,29612,2966,4662010-01-19175a
Quercus robur39,75739,75517,9522010-01-21175a
Raphanus raphanistrum subsp. landra41,93541,93117,5642008-05-7165a
Raphanus raphanistrum subsp. maritimus40,66040,64917,3332008-05-7165a
Raphanus raphanistrum subsp. raphanistrum81,53081,50533,3692008-05-7165a
Raphanus sativus83,15183,10132,5022008-05-7165a
Raphanus sativus var. oleiformis40,32940,32019,3902009-09-24173a
Ricinus communis62,71557,77412,3822008-01-31163a
Saccharum officinarum (sugarcane)265,155246,581131,3812007-01-27157a
Salvia miltiorrhiza (Chinese salvia)10,33810,3065,6242007-01-28157a
Saruma henryi10,28110,2776,7542007-01-28157a
Secale cereale (rye)9,4159,2645,9772007-01-28157a
Selaginella moellendorffii93,86793,82820,5422008-05-5165a
Solanum chacoense7,8157,8057,1102008-03-17163a
Solanum habrochaites26,03926,03912,0112010-01-21175a
Solanum lycopersicum313,755307,69656,8452009-06-11171a
Solanum melongena98,16098,16025,4432010-01-21175a
Solanum pennellii10,96010,9605,0082010-01-15175a
Solanum torvum28,38428,3849,1822010-01-15175a
Solanum tuberosum (potato)238,927228,38170,3442007-01-28157a
Sorghum bicolor (sorghum)210,040204,30644,9542007-01-28157a
Sorghum propinquum20,88220,8829,0612007-01-28157a
Syntrichia ruralis10,01010,0107,0872009-01-13169a
Tamarix hispida17,43617,4018,6162007-01-28157a
Taraxacum officinale41,45941,45818,3332007-01-28157a
Thellungiella halophila38,09538,09016,7832009-01-13169a
Theobroma cacao159,362148,87257,0352009-01-13169a
Trifolium pratense38,28538,27712,7462007-01-28157a
Triphysaria pusilla59,54959,54925,9472007-11-12162b
Triphysaria versicolor49,01449,01415,2552007-11-12162b
Triticum aestivum (bread wheat)1,076,6651,052,845301,7652008-04-15163b
Triticum monococcum (one-grained wheat)11,31411,2316,9872007-01-28157a
Triticum turgidum subsp. durum19,87519,7258,4602009-01-14169a
Tropaeolum majus10,52410,5184,6962009-01-13169a
Vigna unguiculata187,596183,79934,7362008-09-13167a
Vitis shuttleworthii (calloose grape)10,70410,7045,9052007-01-28157a
Vitis vinifera (wine grape)358,696353,46064,7962009-01-14169a
Volvox carteri f. nagariensis132,099132,09620,6872008-05-6165a
Welwitschia mirabilis10,13710,1346,6062007-01-29157a
Zamia vazquezii11,49511,4957,6572008-05-6165a
Zea mays2,099,8001,293,797181,7172009-10-30171a
Zingiber officinale38,16338,10316,4952007-01-29157a
Zinnia violacea20,71220,70717,0112009-06-11171a

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!