Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 164180020 | Cenchrus_ciliaris | EST | Vector |
| 164183610 | Cenchrus_ciliaris | EST | Vector |
| 164067274 | Cenchrus_ciliaris | EST | Vector |
| 163967877 | Cenchrus_ciliaris | EST | Vector |
| 164071129 | Cenchrus_ciliaris | EST | Vector |
| 163974007 | Cenchrus_ciliaris | EST | Vector |
| 163974009 | Cenchrus_ciliaris | EST | Vector |
| 163976086 | Cenchrus_ciliaris | EST | Vector |
| 164073283 | Cenchrus_ciliaris | EST | Vector |
| 164082165 | Cenchrus_ciliaris | EST | Vector |
| 164083049 | Cenchrus_ciliaris | EST | Vector |
| 164085702 | Cenchrus_ciliaris | EST | Vector |
| 164103738 | Cenchrus_ciliaris | EST | Vector |
| 164104502 | Cenchrus_ciliaris | EST | Vector |
| 164183635 | Cenchrus_ciliaris | EST | Vector |
| 164184555 | Cenchrus_ciliaris | EST | Vector |
| 163994869 | Cenchrus_ciliaris | EST | Vector |
| 164000746 | Cenchrus_ciliaris | EST | Vector |
| 164000747 | Cenchrus_ciliaris | EST | Vector |
| 164002707 | Cenchrus_ciliaris | EST | Vector |
| 164004670 | Cenchrus_ciliaris | EST | Vector |
| 164004671 | Cenchrus_ciliaris | EST | Vector |
| 164006640 | Cenchrus_ciliaris | EST | Vector |
| 164112658 | Cenchrus_ciliaris | EST | Vector |
| 164008597 | Cenchrus_ciliaris | EST | Vector |
| 164008599 | Cenchrus_ciliaris | EST | Vector |
| 164008600 | Cenchrus_ciliaris | EST | Vector |
| 164113551 | Cenchrus_ciliaris | EST | Vector |
| 164102827 | Cenchrus_ciliaris | EST | Vector |
| 164114450 | Cenchrus_ciliaris | EST | Vector |
| 164114451 | Cenchrus_ciliaris | EST | Vector |
| 164114452 | Cenchrus_ciliaris | EST | Vector |
| 164104364 | Cenchrus_ciliaris | EST | Vector |
| 164132378 | Cenchrus_ciliaris | EST | Vector |
| 164132998 | Cenchrus_ciliaris | EST | Vector |
| 164106664 | Cenchrus_ciliaris | EST | Vector |
| 164134217 | Cenchrus_ciliaris | EST | Vector |
| 164134222 | Cenchrus_ciliaris | EST | Vector |
| 164136071 | Cenchrus_ciliaris | EST | Vector |
| 164151955 | Cenchrus_ciliaris | EST | Vector |
| 164153849 | Cenchrus_ciliaris | EST | Vector |
| 164178279 | Cenchrus_ciliaris | EST | Vector |
| 164157659 | Cenchrus_ciliaris | EST | Vector |
| 163974028 | Cenchrus_ciliaris | EST | Vector |
| 164161109 | Cenchrus_ciliaris | EST | Vector |
| 164162825 | Cenchrus_ciliaris | EST | Vector |
| 164164542 | Cenchrus_ciliaris | EST | Vector |
| 164165368 | Cenchrus_ciliaris | EST | Vector |
| 164167089 | Cenchrus_ciliaris | EST | Vector |
| 164080106 | Cenchrus_ciliaris | EST | Vector |
| 164080108 | Cenchrus_ciliaris | EST | Vector |
| 164168814 | Cenchrus_ciliaris | EST | Vector |
| 164168816 | Cenchrus_ciliaris | EST | Vector |
| 164169671 | Cenchrus_ciliaris | EST | Vector |
| 164181960 | Cenchrus_ciliaris | EST | Vector |
| 164072050 | Cenchrus_ciliaris | EST | Vector |
| 164185568 | Cenchrus_ciliaris | EST | Vector |
| 164075471 | Cenchrus_ciliaris | EST | Vector |
| 164080117 | Cenchrus_ciliaris | EST | Vector |
| 164080119 | Cenchrus_ciliaris | EST | Vector |
| 164150950 | Cenchrus_ciliaris | EST | Vector |
| 164150951 | Cenchrus_ciliaris | EST | Vector |
| 164198675 | Cenchrus_ciliaris | EST | Vector |
| 164216353 | Cenchrus_ciliaris | EST | Vector |
| 164212884 | Cenchrus_ciliaris | EST | Vector |
| 164213634 | Cenchrus_ciliaris | EST | Vector |
| 164013187 | Cenchrus_ciliaris | EST | Vector |
| 164014524 | Cenchrus_ciliaris | EST | Vector |
| 163970186 | Cenchrus_ciliaris | EST | Vector |
| 164132297 | Cenchrus_ciliaris | EST | Vector |
| 164132298 | Cenchrus_ciliaris | EST | Vector |
| 164132920 | Cenchrus_ciliaris | EST | Vector |
| 164132921 | Cenchrus_ciliaris | EST | Vector |
| 164134129 | Cenchrus_ciliaris | EST | Vector |
| 164135369 | Cenchrus_ciliaris | EST | Vector |
| 163989545 | Cenchrus_ciliaris | EST | Vector |
| 163991391 | Cenchrus_ciliaris | EST | Vector |
| 164209254 | Cenchrus_ciliaris | EST | Vector |
| 164209255 | Cenchrus_ciliaris | EST | Vector |
| 164209259 | Cenchrus_ciliaris | EST | Vector |
| 164209989 | Cenchrus_ciliaris | EST | Vector |
| 164034018 | Cenchrus_ciliaris | EST | Vector |
| 164211455 | Cenchrus_ciliaris | EST | Vector |
| 164211456 | Cenchrus_ciliaris | EST | Vector |
| 164212190 | Cenchrus_ciliaris | EST | Vector |
| 164038038 | Cenchrus_ciliaris | EST | Vector |
| 164212921 | Cenchrus_ciliaris | EST | Vector |
| 164214403 | Cenchrus_ciliaris | EST | Vector |
| 164033907 | Cenchrus_ciliaris | EST | Vector |
| 164033908 | Cenchrus_ciliaris | EST | Vector |
| 164043549 | Cenchrus_ciliaris | EST | Vector |
| 164035222 | Cenchrus_ciliaris | EST | Vector |
| 164035223 | Cenchrus_ciliaris | EST | Vector |
| 164044922 | Cenchrus_ciliaris | EST | Vector |
| 164036570 | Cenchrus_ciliaris | EST | Vector |
| 164047522 | Cenchrus_ciliaris | EST | Vector |
| 164048825 | Cenchrus_ciliaris | EST | Vector |
| 164103609 | Cenchrus_ciliaris | EST | Vector |
| 164103610 | Cenchrus_ciliaris | EST | Vector |
| 164104377 | Cenchrus_ciliaris | EST | Vector |