Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 126560732 | Carthamus_tinctorius | EST | Vector |
| 125481519 | Carthamus_tinctorius | EST | Vector |
| 126225079 | Carthamus_tinctorius | EST | Vector |
| 126225080 | Carthamus_tinctorius | EST | Vector |
| 126225083 | Carthamus_tinctorius | EST | Vector |
| 126225084 | Carthamus_tinctorius | EST | Vector |
| 126229106 | Carthamus_tinctorius | EST | Vector |
| 126229108 | Carthamus_tinctorius | EST | Vector |
| 126229109 | Carthamus_tinctorius | EST | Vector |
| 126229111 | Carthamus_tinctorius | EST | Vector |
| 126229112 | Carthamus_tinctorius | EST | Vector |
| 126229114 | Carthamus_tinctorius | EST | Vector |
| 126229115 | Carthamus_tinctorius | EST | Vector |
| 126229116 | Carthamus_tinctorius | EST | Vector |
| 126229117 | Carthamus_tinctorius | EST | Vector |
| 126229118 | Carthamus_tinctorius | EST | Vector |
| 126229120 | Carthamus_tinctorius | EST | Vector |
| 126229121 | Carthamus_tinctorius | EST | Vector |
| 126229123 | Carthamus_tinctorius | EST | Vector |
| 126229124 | Carthamus_tinctorius | EST | Vector |
| 126229125 | Carthamus_tinctorius | EST | Vector |
| 126229126 | Carthamus_tinctorius | EST | Vector |
| 126229127 | Carthamus_tinctorius | EST | Vector |
| 126229128 | Carthamus_tinctorius | EST | Vector |
| 126229129 | Carthamus_tinctorius | EST | Vector |
| 126229130 | Carthamus_tinctorius | EST | Vector |
| 126229131 | Carthamus_tinctorius | EST | Vector |
| 126229132 | Carthamus_tinctorius | EST | Vector |
| 126229133 | Carthamus_tinctorius | EST | Vector |
| 126229134 | Carthamus_tinctorius | EST | Vector |
| 126229135 | Carthamus_tinctorius | EST | Vector |
| 126229136 | Carthamus_tinctorius | EST | Vector |
| 126229137 | Carthamus_tinctorius | EST | Vector |
| 126229139 | Carthamus_tinctorius | EST | Vector |
| 126229141 | Carthamus_tinctorius | EST | Vector |
| 126229142 | Carthamus_tinctorius | EST | Vector |
| 126229143 | Carthamus_tinctorius | EST | Vector |
| 126229144 | Carthamus_tinctorius | EST | Vector |
| 126229146 | Carthamus_tinctorius | EST | Vector |
| 126229149 | Carthamus_tinctorius | EST | Vector |
| 126229150 | Carthamus_tinctorius | EST | Vector |
| 126229151 | Carthamus_tinctorius | EST | Vector |
| 126229152 | Carthamus_tinctorius | EST | Vector |
| 126229153 | Carthamus_tinctorius | EST | Vector |
| 126229155 | Carthamus_tinctorius | EST | Vector |
| 126229156 | Carthamus_tinctorius | EST | Vector |
| 126229157 | Carthamus_tinctorius | EST | Vector |
| 126229158 | Carthamus_tinctorius | EST | Vector |
| 126229160 | Carthamus_tinctorius | EST | Vector |
| 126229162 | Carthamus_tinctorius | EST | Vector |
| 126229163 | Carthamus_tinctorius | EST | Vector |
| 126229164 | Carthamus_tinctorius | EST | Vector |
| 126229165 | Carthamus_tinctorius | EST | Vector |
| 126229166 | Carthamus_tinctorius | EST | Vector |
| 126229167 | Carthamus_tinctorius | EST | Vector |
| 126229168 | Carthamus_tinctorius | EST | Vector |
| 126229169 | Carthamus_tinctorius | EST | Vector |
| 126229170 | Carthamus_tinctorius | EST | Vector |
| 126229171 | Carthamus_tinctorius | EST | Vector |
| 126229172 | Carthamus_tinctorius | EST | Vector |
| 126229174 | Carthamus_tinctorius | EST | Vector |
| 126229175 | Carthamus_tinctorius | EST | Vector |
| 126229176 | Carthamus_tinctorius | EST | Vector |
| 126229177 | Carthamus_tinctorius | EST | Vector |
| 126229178 | Carthamus_tinctorius | EST | Vector |
| 126229179 | Carthamus_tinctorius | EST | Vector |
| 126229180 | Carthamus_tinctorius | EST | Vector |
| 126229181 | Carthamus_tinctorius | EST | Vector |
| 126229183 | Carthamus_tinctorius | EST | Vector |
| 126229185 | Carthamus_tinctorius | EST | Vector |
| 126229186 | Carthamus_tinctorius | EST | Vector |
| 126229187 | Carthamus_tinctorius | EST | Vector |
| 126229188 | Carthamus_tinctorius | EST | Vector |
| 126229189 | Carthamus_tinctorius | EST | Vector |
| 126229190 | Carthamus_tinctorius | EST | Vector |
| 126229191 | Carthamus_tinctorius | EST | Vector |
| 126229192 | Carthamus_tinctorius | EST | Vector |
| 126229193 | Carthamus_tinctorius | EST | Vector |
| 126229195 | Carthamus_tinctorius | EST | Vector |
| 126229196 | Carthamus_tinctorius | EST | Vector |
| 126229198 | Carthamus_tinctorius | EST | Vector |
| 126229199 | Carthamus_tinctorius | EST | Vector |
| 126229200 | Carthamus_tinctorius | EST | Vector |
| 126229202 | Carthamus_tinctorius | EST | Vector |
| 126229204 | Carthamus_tinctorius | EST | Vector |
| 126229205 | Carthamus_tinctorius | EST | Vector |
| 126229207 | Carthamus_tinctorius | EST | Vector |
| 126229210 | Carthamus_tinctorius | EST | Vector |
| 126229212 | Carthamus_tinctorius | EST | Vector |
| 126229213 | Carthamus_tinctorius | EST | Vector |
| 126229214 | Carthamus_tinctorius | EST | Vector |
| 126229215 | Carthamus_tinctorius | EST | Vector |
| 126229216 | Carthamus_tinctorius | EST | Vector |
| 126229217 | Carthamus_tinctorius | EST | Vector |
| 126229219 | Carthamus_tinctorius | EST | Vector |
| 126229220 | Carthamus_tinctorius | EST | Vector |
| 126229221 | Carthamus_tinctorius | EST | Vector |
| 126229222 | Carthamus_tinctorius | EST | Vector |
| 126229223 | Carthamus_tinctorius | EST | Vector |
| 126229224 | Carthamus_tinctorius | EST | Vector |