Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 159517570 | Carica_papaya | EST | Vector |
| 159517573 | Carica_papaya | EST | Vector |
| 159517574 | Carica_papaya | EST | Vector |
| 159517707 | Carica_papaya | EST | Vector |
| 159518195 | Carica_papaya | EST | Vector |
| 159518362 | Carica_papaya | EST | Vector |
| 159518435 | Carica_papaya | EST | Vector |
| 159517871 | Carica_papaya | EST | Vector |
| 159517917 | Carica_papaya | EST | Vector |
| 159518063 | Carica_papaya | EST | Vector |
| 159518110 | Carica_papaya | EST | Vector |
| 159518604 | Carica_papaya | EST | Vector |
| 159518741 | Carica_papaya | EST | Vector |
| 164409774 | Carica_papaya | EST | Vector |
| 164409788 | Carica_papaya | EST | Vector |
| 164409664 | Carica_papaya | EST | Vector |
| 164409667 | Carica_papaya | EST | Vector |
| 164409671 | Carica_papaya | EST | Vector |
| 164409692 | Carica_papaya | EST | Vector |
| 194268097 | Carica_papaya | EST | Vector |
| 194268090 | Carica_papaya | EST | Vector |
| 49458137 | Carica_papaya | EST | Vector |
| 186779141 | Carica_papaya | EST | Vector |
| 186830557 | Carica_papaya | EST | Vector |
| 186777730 | Carica_papaya | EST | Vector |
| 186864094 | Carica_papaya | EST | Vector |
| 186792378 | Carica_papaya | EST | Vector |
| 186733500 | Carica_papaya | EST | Vector |
| 186753347 | Carica_papaya | EST | Vector |
| 186768021 | Carica_papaya | EST | Vector |
| 186798242 | Carica_papaya | EST | Vector |
| 186753631 | Carica_papaya | EST | Vector |
| 186851593 | Carica_papaya | EST | Vector |
| 186867732 | Carica_papaya | EST | Vector |
| 186790685 | Carica_papaya | EST | Vector |
| 186808354 | Carica_papaya | EST | Vector |
| 186838276 | Carica_papaya | EST | Vector |
| 186806668 | Carica_papaya | EST | Vector |
| 186720687 | Carica_papaya | EST | Vector |
| 186745597 | Carica_papaya | EST | Vector |
| 186797566 | Carica_papaya | EST | Vector |
| 186737660 | Carica_papaya | EST | Vector |
| 186830117 | Carica_papaya | EST | Vector |
| 186882715 | Carica_papaya | EST | Vector |
| 186795321 | Carica_papaya | EST | Vector |
| 186795316 | Carica_papaya | EST | Vector |
| 186774952 | Carica_papaya | EST | Vector |
| 186775620 | Carica_papaya | EST | Vector |
| 186772772 | Carica_papaya | EST | Vector |
| 186793171 | Carica_papaya | EST | Vector |
| 186794073 | Carica_papaya | EST | Vector |
| 186794072 | Carica_papaya | EST | Vector |
| 186822791 | Carica_papaya | EST | Vector |
| 186822792 | Carica_papaya | EST | Vector |
| 186822788 | Carica_papaya | EST | Vector |
| 186876329 | Carica_papaya | EST | Vector |
| 186776027 | Carica_papaya | EST | Vector |
| 186816628 | Carica_papaya | EST | Vector |
| 186858236 | Carica_papaya | EST | Vector |
| 186751062 | Carica_papaya | EST | Vector |
| 186803927 | Carica_papaya | EST | Vector |
| 186710648 | Carica_papaya | EST | Vector |
| 186882603 | Carica_papaya | EST | Vector |
| 186784630 | Carica_papaya | EST | Vector |
| 186784631 | Carica_papaya | EST | Vector |
| 186838997 | Carica_papaya | EST | Vector |
| 186835194 | Carica_papaya | EST | Vector |
| 186835195 | Carica_papaya | EST | Vector |
| 186835935 | Carica_papaya | EST | Vector |
| 186793392 | Carica_papaya | EST | Vector |
| 186859296 | Carica_papaya | EST | Vector |
| 186860115 | Carica_papaya | EST | Vector |
| 186781509 | Carica_papaya | EST | Vector |
| 186835963 | Carica_papaya | EST | Vector |
| 186789792 | Carica_papaya | EST | Vector |
| 186789785 | Carica_papaya | EST | Vector |
| 186796177 | Carica_papaya | EST | Vector |
| 186796179 | Carica_papaya | EST | Vector |
| 186803168 | Carica_papaya | EST | Vector |
| 186870235 | Carica_papaya | EST | Vector |
| 186783206 | Carica_papaya | EST | Vector |
| 186858016 | Carica_papaya | EST | Vector |
| 186858017 | Carica_papaya | EST | Vector |
| 186844439 | Carica_papaya | EST | Vector |
| 186811520 | Carica_papaya | EST | Vector |
| 186851601 | Carica_papaya | EST | Vector |
| 186739163 | Carica_papaya | EST | Vector |
| 186780580 | Carica_papaya | EST | Vector |
| 186786779 | Carica_papaya | EST | Vector |
| 186786777 | Carica_papaya | EST | Vector |
| 186845614 | Carica_papaya | EST | Vector |
| 186778359 | Carica_papaya | EST | Vector |
| 186837516 | Carica_papaya | EST | Vector |
| 186705202 | Carica_papaya | EST | Vector |
| 186760767 | Carica_papaya | EST | Vector |
| 186760761 | Carica_papaya | EST | Vector |
| 186811748 | Carica_papaya | EST | Vector |
| 186756195 | Carica_papaya | EST | Vector |
| 186748380 | Carica_papaya | EST | Vector |
| 186769084 | Carica_papaya | EST | Vector |