Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
159517570Carica_papayaESTVector
159517573Carica_papayaESTVector
159517574Carica_papayaESTVector
159517707Carica_papayaESTVector
159518195Carica_papayaESTVector
159518362Carica_papayaESTVector
159518435Carica_papayaESTVector
159517871Carica_papayaESTVector
159517917Carica_papayaESTVector
159518063Carica_papayaESTVector
159518110Carica_papayaESTVector
159518604Carica_papayaESTVector
159518741Carica_papayaESTVector
164409774Carica_papayaESTVector
164409788Carica_papayaESTVector
164409664Carica_papayaESTVector
164409667Carica_papayaESTVector
164409671Carica_papayaESTVector
164409692Carica_papayaESTVector
194268097Carica_papayaESTVector
194268090Carica_papayaESTVector
49458137Carica_papayaESTVector
186779141Carica_papayaESTVector
186830557Carica_papayaESTVector
186777730Carica_papayaESTVector
186864094Carica_papayaESTVector
186792378Carica_papayaESTVector
186733500Carica_papayaESTVector
186753347Carica_papayaESTVector
186768021Carica_papayaESTVector
186798242Carica_papayaESTVector
186753631Carica_papayaESTVector
186851593Carica_papayaESTVector
186867732Carica_papayaESTVector
186790685Carica_papayaESTVector
186808354Carica_papayaESTVector
186838276Carica_papayaESTVector
186806668Carica_papayaESTVector
186720687Carica_papayaESTVector
186745597Carica_papayaESTVector
186797566Carica_papayaESTVector
186737660Carica_papayaESTVector
186830117Carica_papayaESTVector
186882715Carica_papayaESTVector
186795321Carica_papayaESTVector
186795316Carica_papayaESTVector
186774952Carica_papayaESTVector
186775620Carica_papayaESTVector
186772772Carica_papayaESTVector
186793171Carica_papayaESTVector
186794073Carica_papayaESTVector
186794072Carica_papayaESTVector
186822791Carica_papayaESTVector
186822792Carica_papayaESTVector
186822788Carica_papayaESTVector
186876329Carica_papayaESTVector
186776027Carica_papayaESTVector
186816628Carica_papayaESTVector
186858236Carica_papayaESTVector
186751062Carica_papayaESTVector
186803927Carica_papayaESTVector
186710648Carica_papayaESTVector
186882603Carica_papayaESTVector
186784630Carica_papayaESTVector
186784631Carica_papayaESTVector
186838997Carica_papayaESTVector
186835194Carica_papayaESTVector
186835195Carica_papayaESTVector
186835935Carica_papayaESTVector
186793392Carica_papayaESTVector
186859296Carica_papayaESTVector
186860115Carica_papayaESTVector
186781509Carica_papayaESTVector
186835963Carica_papayaESTVector
186789792Carica_papayaESTVector
186789785Carica_papayaESTVector
186796177Carica_papayaESTVector
186796179Carica_papayaESTVector
186803168Carica_papayaESTVector
186870235Carica_papayaESTVector
186783206Carica_papayaESTVector
186858016Carica_papayaESTVector
186858017Carica_papayaESTVector
186844439Carica_papayaESTVector
186811520Carica_papayaESTVector
186851601Carica_papayaESTVector
186739163Carica_papayaESTVector
186780580Carica_papayaESTVector
186786779Carica_papayaESTVector
186786777Carica_papayaESTVector
186845614Carica_papayaESTVector
186778359Carica_papayaESTVector
186837516Carica_papayaESTVector
186705202Carica_papayaESTVector
186760767Carica_papayaESTVector
186760761Carica_papayaESTVector
186811748Carica_papayaESTVector
186756195Carica_papayaESTVector
186748380Carica_papayaESTVector
186769084Carica_papayaESTVector

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