Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 55700353 | Capsicum_annuum | EST | Vector |
| 55700358 | Capsicum_annuum | EST | Vector |
| 55700360 | Capsicum_annuum | EST | Vector |
| 55700366 | Capsicum_annuum | EST | Vector |
| 191640242 | Capsicum_annuum | EST | Vector |
| 191640276 | Capsicum_annuum | EST | Vector |
| 191642304 | Capsicum_annuum | EST | Vector |
| 191642393 | Capsicum_annuum | EST | Vector |
| 191640175 | Capsicum_annuum | EST | Vector |
| 191639896 | Capsicum_annuum | EST | Vector |
| 191640151 | Capsicum_annuum | EST | Vector |
| 191641933 | Capsicum_annuum | EST | Vector |
| 51296730 | Capsicum_annuum | EST | Vector |
| 51296822 | Capsicum_annuum | EST | Vector |
| 51296839 | Capsicum_annuum | EST | Vector |
| 51296866 | Capsicum_annuum | EST | Vector |
| 51296896 | Capsicum_annuum | EST | Vector |
| 51297062 | Capsicum_annuum | EST | Vector |
| 51297254 | Capsicum_annuum | EST | Vector |
| 51297351 | Capsicum_annuum | EST | Vector |
| 51297491 | Capsicum_annuum | EST | Vector |
| 51297660 | Capsicum_annuum | EST | Vector |
| 51297675 | Capsicum_annuum | EST | Vector |
| 51297744 | Capsicum_annuum | EST | Vector |
| 51297870 | Capsicum_annuum | EST | Vector |
| 51298027 | Capsicum_annuum | EST | Vector |
| 51298077 | Capsicum_annuum | EST | Vector |
| 51298100 | Capsicum_annuum | EST | Vector |
| 51298113 | Capsicum_annuum | EST | Vector |
| 51298324 | Capsicum_annuum | EST | Vector |
| 51298339 | Capsicum_annuum | EST | Vector |
| 51298345 | Capsicum_annuum | EST | Vector |
| 51298482 | Capsicum_annuum | EST | Vector |
| 51298503 | Capsicum_annuum | EST | Vector |
| 51298546 | Capsicum_annuum | EST | Vector |
| 51298647 | Capsicum_annuum | EST | Vector |
| 51298766 | Capsicum_annuum | EST | Vector |
| 51298813 | Capsicum_annuum | EST | Vector |
| 51298845 | Capsicum_annuum | EST | Vector |
| 51298858 | Capsicum_annuum | EST | Vector |
| 51298962 | Capsicum_annuum | EST | Vector |
| 51299035 | Capsicum_annuum | EST | Vector |
| 51299207 | Capsicum_annuum | EST | Vector |
| 51300021 | Capsicum_annuum | EST | Vector |
| 51300042 | Capsicum_annuum | EST | Vector |
| 51300367 | Capsicum_annuum | EST | Vector |
| 51300390 | Capsicum_annuum | EST | Vector |
| 51300400 | Capsicum_annuum | EST | Vector |
| 51300513 | Capsicum_annuum | EST | Vector |
| 51300532 | Capsicum_annuum | EST | Vector |
| 51300627 | Capsicum_annuum | EST | Vector |
| 51300853 | Capsicum_annuum | EST | Vector |
| 51300861 | Capsicum_annuum | EST | Vector |
| 51300917 | Capsicum_annuum | EST | Vector |
| 51300995 | Capsicum_annuum | EST | Vector |
| 51301073 | Capsicum_annuum | EST | Vector |
| 51301109 | Capsicum_annuum | EST | Vector |
| 51301149 | Capsicum_annuum | EST | Vector |
| 51301178 | Capsicum_annuum | EST | Vector |
| 51301386 | Capsicum_annuum | EST | Vector |
| 51301412 | Capsicum_annuum | EST | Vector |
| 51301508 | Capsicum_annuum | EST | Vector |
| 51301647 | Capsicum_annuum | EST | Vector |
| 51301668 | Capsicum_annuum | EST | Vector |
| 51301708 | Capsicum_annuum | EST | Vector |
| 51301731 | Capsicum_annuum | EST | Vector |
| 51301748 | Capsicum_annuum | EST | Vector |
| 51301827 | Capsicum_annuum | EST | Vector |
| 51301860 | Capsicum_annuum | EST | Vector |
| 51301899 | Capsicum_annuum | EST | Vector |
| 51301925 | Capsicum_annuum | EST | Vector |
| 51301962 | Capsicum_annuum | EST | Vector |
| 51301976 | Capsicum_annuum | EST | Vector |
| 51302022 | Capsicum_annuum | EST | Vector |
| 51302061 | Capsicum_annuum | EST | Vector |
| 51302126 | Capsicum_annuum | EST | Vector |
| 51302230 | Capsicum_annuum | EST | Vector |
| 51302262 | Capsicum_annuum | EST | Vector |
| 51302307 | Capsicum_annuum | EST | Vector |
| 51302320 | Capsicum_annuum | EST | Vector |
| 51302403 | Capsicum_annuum | EST | Vector |
| 51302509 | Capsicum_annuum | EST | Vector |
| 51302603 | Capsicum_annuum | EST | Vector |
| 51302736 | Capsicum_annuum | EST | Vector |
| 224661445 | Capsicum_annuum | EST | Vector |
| 224633641 | Capsicum_annuum | EST | Vector |
| 224663215 | Capsicum_annuum | EST | Vector |
| 224696747 | Capsicum_annuum | EST | Vector |
| 224696751 | Capsicum_annuum | EST | Vector |
| 224680028 | Capsicum_annuum | EST | Vector |
| 224618107 | Capsicum_annuum | EST | Vector |
| 224619321 | Capsicum_annuum | EST | Vector |
| 224639505 | Capsicum_annuum | EST | Vector |
| 224641619 | Capsicum_annuum | EST | Vector |
| 224647135 | Capsicum_annuum | EST | Vector |
| 224630882 | Capsicum_annuum | EST | Vector |
| 224631530 | Capsicum_annuum | EST | Vector |
| 224653546 | Capsicum_annuum | EST | Vector |
| 224655049 | Capsicum_annuum | EST | Vector |
| 224619343 | Capsicum_annuum | EST | Vector |