Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 51452795 | Camellia_sinensis | EST | Vector |
| 51452951 | Camellia_sinensis | EST | Vector |
| 51453056 | Camellia_sinensis | EST | Vector |
| 51453123 | Camellia_sinensis | EST | Vector |
| 51453218 | Camellia_sinensis | EST | Vector |
| 51453221 | Camellia_sinensis | EST | Vector |
| 51453327 | Camellia_sinensis | EST | Vector |
| 51453368 | Camellia_sinensis | EST | Vector |
| 51453376 | Camellia_sinensis | EST | Vector |
| 51453598 | Camellia_sinensis | EST | Vector |
| 51453813 | Camellia_sinensis | EST | Vector |
| 51530115 | Camellia_sinensis | EST | Vector |
| 206583670 | Camellia_sinensis | EST | Vector |
| 206583673 | Camellia_sinensis | EST | Vector |
| 328683786 | Camellia_sinensis | EST | Vector |
| 328683890 | Camellia_sinensis | EST | Vector |
| 328683891 | Camellia_sinensis | EST | Vector |
| 328683899 | Camellia_sinensis | EST | Vector |
| 328683903 | Camellia_sinensis | EST | Vector |
| 328683920 | Camellia_sinensis | EST | Vector |
| 328683928 | Camellia_sinensis | EST | Vector |
| 328683929 | Camellia_sinensis | EST | Vector |
| 328683932 | Camellia_sinensis | EST | Vector |
| 328683950 | Camellia_sinensis | EST | Vector |
| 328683962 | Camellia_sinensis | EST | Vector |
| 328683970 | Camellia_sinensis | EST | Vector |
| 328683972 | Camellia_sinensis | EST | Vector |
| 328683995 | Camellia_sinensis | EST | Vector |
| 328683998 | Camellia_sinensis | EST | Vector |
| 328684021 | Camellia_sinensis | EST | Vector |
| 328684024 | Camellia_sinensis | EST | Vector |
| 328684029 | Camellia_sinensis | EST | Vector |
| 328684049 | Camellia_sinensis | EST | Vector |
| 328684060 | Camellia_sinensis | EST | Vector |
| 328684064 | Camellia_sinensis | EST | Vector |
| 347360404 | Camellia_sinensis | EST | Vector |
| 347360428 | Camellia_sinensis | EST | Vector |
| 347360461 | Camellia_sinensis | EST | Vector |
| 284026212 | Camellia_sinensis | EST | Vector |
| 145309132 | Camellia_sinensis | EST | Vector |
| 145309133 | Camellia_sinensis | EST | Vector |
| 145309134 | Camellia_sinensis | EST | Vector |
| 145309137 | Camellia_sinensis | EST | Vector |
| 145309143 | Camellia_sinensis | EST | Vector |
| 145309158 | Camellia_sinensis | EST | Vector |
| 145309167 | Camellia_sinensis | EST | Vector |
| 145309175 | Camellia_sinensis | EST | Vector |
| 145309178 | Camellia_sinensis | EST | Vector |
| 145309179 | Camellia_sinensis | EST | Vector |
| 145309183 | Camellia_sinensis | EST | Vector |
| 290775571 | Camellia_sinensis | EST | Vector |
| 327360532 | Camellia_sinensis | EST | Vector |
| 327360534 | Camellia_sinensis | EST | Vector |
| 327360571 | Camellia_sinensis | EST | Vector |
| 327360575 | Camellia_sinensis | EST | Vector |
| 327360599 | Camellia_sinensis | EST | Vector |
| 327360623 | Camellia_sinensis | EST | Vector |
| 327360630 | Camellia_sinensis | EST | Vector |
| 327360649 | Camellia_sinensis | EST | Vector |
| 327360702 | Camellia_sinensis | EST | Vector |
| 327360711 | Camellia_sinensis | EST | Vector |
| 327360724 | Camellia_sinensis | EST | Vector |
| 327361151 | Camellia_sinensis | EST | Vector |
| 327361021 | Camellia_sinensis | EST | Vector |
| 327361023 | Camellia_sinensis | EST | Vector |
| 327361026 | Camellia_sinensis | EST | Vector |
| 327361031 | Camellia_sinensis | EST | Vector |
| 327361136 | Camellia_sinensis | EST | Vector |
| 215399004 | Camellia_sinensis | EST | Vector |
| 215399013 | Camellia_sinensis | EST | Vector |
| 215399036 | Camellia_sinensis | EST | Vector |
| 305638124 | Camellia_sinensis | EST | Vector |
| 259016607 | Camellia_sinensis | EST | Vector |
| 259016620 | Camellia_sinensis | EST | Vector |
| 259016621 | Camellia_sinensis | EST | Vector |
| 259016635 | Camellia_sinensis | EST | Vector |
| 259016644 | Camellia_sinensis | EST | Vector |
| 64075584 | Camellia_sinensis | EST | Vector |
| 64075662 | Camellia_sinensis | EST | Vector |
| 55282080 | Camellia_sinensis | EST | Vector |
| 212379433 | Camellia_sinensis | EST | Vector |
| 343702883 | Camellia_sinensis | EST | Vector |
| 343702999 | Camellia_sinensis | EST | Vector |
| 343702581 | Camellia_sinensis | EST | Vector |
| 343702705 | Camellia_sinensis | EST | Vector |
| 171355348 | Camellia_sinensis | EST | Vector |
| 171355089 | Camellia_sinensis | EST | Vector |
| 171355148 | Camellia_sinensis | EST | Vector |
| 289526379 | Camellia_sinensis | EST | Vector |
| 224708693 | Camellia_sinensis | EST | Vector |
| 224708721 | Camellia_sinensis | EST | Vector |
| 224708729 | Camellia_sinensis | EST | Vector |
| 224708732 | Camellia_sinensis | EST | Vector |
| 224708740 | Camellia_sinensis | EST | Vector |
| 224708761 | Camellia_sinensis | EST | Vector |
| 295345450 | Camellia_sinensis | EST | Vector |
| 295345451 | Camellia_sinensis | EST | Vector |
| 295345452 | Camellia_sinensis | EST | Vector |
| 295345453 | Camellia_sinensis | EST | Vector |
| 295345455 | Camellia_sinensis | EST | Vector |