Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
150883664Brassica_rapaESTVector
150898669Brassica_rapaESTVector
150898700Brassica_rapaESTVector
150898733Brassica_rapaESTVector
150898759Brassica_rapaESTVector
150898786Brassica_rapaESTVector
150898801Brassica_rapaESTVector
150898828Brassica_rapaESTVector
150898854Brassica_rapaESTVector
150898896Brassica_rapaESTVector
150898907Brassica_rapaESTVector
150898934Brassica_rapaESTVector
150898949Brassica_rapaESTVector
150898956Brassica_rapaESTVector
150898970Brassica_rapaESTVector
150898992Brassica_rapaESTVector
150899040Brassica_rapaESTVector
150899110Brassica_rapaESTVector
150899127Brassica_rapaESTVector
150899157Brassica_rapaESTVector
150899162Brassica_rapaESTVector
150899238Brassica_rapaESTVector
150899242Brassica_rapaESTVector
150899302Brassica_rapaESTVector
150899334Brassica_rapaESTVector
150899402Brassica_rapaESTVector
150899420Brassica_rapaESTVector
150899439Brassica_rapaESTVector
150899455Brassica_rapaESTVector
150899459Brassica_rapaESTVector
150899498Brassica_rapaESTVector
150899515Brassica_rapaESTVector
150899520Brassica_rapaESTVector
150899521Brassica_rapaESTVector
150899541Brassica_rapaESTVector
150899553Brassica_rapaESTVector
150899609Brassica_rapaESTVector
150899674Brassica_rapaESTVector
150899693Brassica_rapaESTVector
150899743Brassica_rapaESTVector
150899757Brassica_rapaESTVector
150899771Brassica_rapaESTVector
150899776Brassica_rapaESTVector
150899837Brassica_rapaESTVector
150899977Brassica_rapaESTVector
150899996Brassica_rapaESTVector
150900048Brassica_rapaESTVector
150900123Brassica_rapaESTVector
150900232Brassica_rapaESTVector
150900235Brassica_rapaESTVector
150900269Brassica_rapaESTVector
150900284Brassica_rapaESTVector
150900293Brassica_rapaESTVector
150900301Brassica_rapaESTVector
150900318Brassica_rapaESTVector
150900321Brassica_rapaESTVector
150900323Brassica_rapaESTVector
150900330Brassica_rapaESTVector
150900384Brassica_rapaESTVector
150900386Brassica_rapaESTVector
150900398Brassica_rapaESTVector
150900418Brassica_rapaESTVector
150900436Brassica_rapaESTVector
150900467Brassica_rapaESTVector
150900498Brassica_rapaESTVector
150900504Brassica_rapaESTVector
150900518Brassica_rapaESTVector
150900527Brassica_rapaESTVector
150900532Brassica_rapaESTVector
150900568Brassica_rapaESTVector
150900651Brassica_rapaESTVector
150900673Brassica_rapaESTVector
150900683Brassica_rapaESTVector
150900703Brassica_rapaESTVector
150900744Brassica_rapaESTVector
150900753Brassica_rapaESTVector
150900808Brassica_rapaESTVector
150900844Brassica_rapaESTVector
150900845Brassica_rapaESTVector
150900968Brassica_rapaESTVector
150900986Brassica_rapaESTVector
150900990Brassica_rapaESTVector
150901003Brassica_rapaESTVector
150901017Brassica_rapaESTVector
150901020Brassica_rapaESTVector
150901037Brassica_rapaESTVector
150901050Brassica_rapaESTVector
150901067Brassica_rapaESTVector
150901105Brassica_rapaESTVector
150901121Brassica_rapaESTVector
150901131Brassica_rapaESTVector
150901452Brassica_rapaESTVector
150901642Brassica_rapaESTVector
150901696Brassica_rapaESTVector
150901721Brassica_rapaESTVector
150901762Brassica_rapaESTVector
150901767Brassica_rapaESTVector
150901785Brassica_rapaESTVector
150901905Brassica_rapaESTVector
150901912Brassica_rapaESTVector

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