Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 150883664 | Brassica_rapa | EST | Vector |
| 150898669 | Brassica_rapa | EST | Vector |
| 150898700 | Brassica_rapa | EST | Vector |
| 150898733 | Brassica_rapa | EST | Vector |
| 150898759 | Brassica_rapa | EST | Vector |
| 150898786 | Brassica_rapa | EST | Vector |
| 150898801 | Brassica_rapa | EST | Vector |
| 150898828 | Brassica_rapa | EST | Vector |
| 150898854 | Brassica_rapa | EST | Vector |
| 150898896 | Brassica_rapa | EST | Vector |
| 150898907 | Brassica_rapa | EST | Vector |
| 150898934 | Brassica_rapa | EST | Vector |
| 150898949 | Brassica_rapa | EST | Vector |
| 150898956 | Brassica_rapa | EST | Vector |
| 150898970 | Brassica_rapa | EST | Vector |
| 150898992 | Brassica_rapa | EST | Vector |
| 150899040 | Brassica_rapa | EST | Vector |
| 150899110 | Brassica_rapa | EST | Vector |
| 150899127 | Brassica_rapa | EST | Vector |
| 150899157 | Brassica_rapa | EST | Vector |
| 150899162 | Brassica_rapa | EST | Vector |
| 150899238 | Brassica_rapa | EST | Vector |
| 150899242 | Brassica_rapa | EST | Vector |
| 150899302 | Brassica_rapa | EST | Vector |
| 150899334 | Brassica_rapa | EST | Vector |
| 150899402 | Brassica_rapa | EST | Vector |
| 150899420 | Brassica_rapa | EST | Vector |
| 150899439 | Brassica_rapa | EST | Vector |
| 150899455 | Brassica_rapa | EST | Vector |
| 150899459 | Brassica_rapa | EST | Vector |
| 150899498 | Brassica_rapa | EST | Vector |
| 150899515 | Brassica_rapa | EST | Vector |
| 150899520 | Brassica_rapa | EST | Vector |
| 150899521 | Brassica_rapa | EST | Vector |
| 150899541 | Brassica_rapa | EST | Vector |
| 150899553 | Brassica_rapa | EST | Vector |
| 150899609 | Brassica_rapa | EST | Vector |
| 150899674 | Brassica_rapa | EST | Vector |
| 150899693 | Brassica_rapa | EST | Vector |
| 150899743 | Brassica_rapa | EST | Vector |
| 150899757 | Brassica_rapa | EST | Vector |
| 150899771 | Brassica_rapa | EST | Vector |
| 150899776 | Brassica_rapa | EST | Vector |
| 150899837 | Brassica_rapa | EST | Vector |
| 150899977 | Brassica_rapa | EST | Vector |
| 150899996 | Brassica_rapa | EST | Vector |
| 150900048 | Brassica_rapa | EST | Vector |
| 150900123 | Brassica_rapa | EST | Vector |
| 150900232 | Brassica_rapa | EST | Vector |
| 150900235 | Brassica_rapa | EST | Vector |
| 150900269 | Brassica_rapa | EST | Vector |
| 150900284 | Brassica_rapa | EST | Vector |
| 150900293 | Brassica_rapa | EST | Vector |
| 150900301 | Brassica_rapa | EST | Vector |
| 150900318 | Brassica_rapa | EST | Vector |
| 150900321 | Brassica_rapa | EST | Vector |
| 150900323 | Brassica_rapa | EST | Vector |
| 150900330 | Brassica_rapa | EST | Vector |
| 150900384 | Brassica_rapa | EST | Vector |
| 150900386 | Brassica_rapa | EST | Vector |
| 150900398 | Brassica_rapa | EST | Vector |
| 150900418 | Brassica_rapa | EST | Vector |
| 150900436 | Brassica_rapa | EST | Vector |
| 150900467 | Brassica_rapa | EST | Vector |
| 150900498 | Brassica_rapa | EST | Vector |
| 150900504 | Brassica_rapa | EST | Vector |
| 150900518 | Brassica_rapa | EST | Vector |
| 150900527 | Brassica_rapa | EST | Vector |
| 150900532 | Brassica_rapa | EST | Vector |
| 150900568 | Brassica_rapa | EST | Vector |
| 150900651 | Brassica_rapa | EST | Vector |
| 150900673 | Brassica_rapa | EST | Vector |
| 150900683 | Brassica_rapa | EST | Vector |
| 150900703 | Brassica_rapa | EST | Vector |
| 150900744 | Brassica_rapa | EST | Vector |
| 150900753 | Brassica_rapa | EST | Vector |
| 150900808 | Brassica_rapa | EST | Vector |
| 150900844 | Brassica_rapa | EST | Vector |
| 150900845 | Brassica_rapa | EST | Vector |
| 150900968 | Brassica_rapa | EST | Vector |
| 150900986 | Brassica_rapa | EST | Vector |
| 150900990 | Brassica_rapa | EST | Vector |
| 150901003 | Brassica_rapa | EST | Vector |
| 150901017 | Brassica_rapa | EST | Vector |
| 150901020 | Brassica_rapa | EST | Vector |
| 150901037 | Brassica_rapa | EST | Vector |
| 150901050 | Brassica_rapa | EST | Vector |
| 150901067 | Brassica_rapa | EST | Vector |
| 150901105 | Brassica_rapa | EST | Vector |
| 150901121 | Brassica_rapa | EST | Vector |
| 150901131 | Brassica_rapa | EST | Vector |
| 150901452 | Brassica_rapa | EST | Vector |
| 150901642 | Brassica_rapa | EST | Vector |
| 150901696 | Brassica_rapa | EST | Vector |
| 150901721 | Brassica_rapa | EST | Vector |
| 150901762 | Brassica_rapa | EST | Vector |
| 150901767 | Brassica_rapa | EST | Vector |
| 150901785 | Brassica_rapa | EST | Vector |
| 150901905 | Brassica_rapa | EST | Vector |
| 150901912 | Brassica_rapa | EST | Vector |