Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
75973560Brassica_oleracea_var__alboglabraESTVector
112357395Brassica_oleracea_var__alboglabraESTVector
122025227Brassica_oleracea_var__alboglabraESTVector
122025404Brassica_oleracea_var__alboglabraESTVector
122025428Brassica_oleracea_var__alboglabraESTVector
122025467Brassica_oleracea_var__alboglabraESTVector
122025694Brassica_oleracea_var__alboglabraESTVector
122025726Brassica_oleracea_var__alboglabraESTVector
122025729Brassica_oleracea_var__alboglabraESTVector
122025827Brassica_oleracea_var__alboglabraESTVector
122025875Brassica_oleracea_var__alboglabraESTVector
122026010Brassica_oleracea_var__alboglabraESTVector
122026116Brassica_oleracea_var__alboglabraESTVector
122026118Brassica_oleracea_var__alboglabraESTVector
122026188Brassica_oleracea_var__alboglabraESTVector
122026227Brassica_oleracea_var__alboglabraESTVector
122026297Brassica_oleracea_var__alboglabraESTVector
122026304Brassica_oleracea_var__alboglabraESTVector
122026418Brassica_oleracea_var__alboglabraESTVector
122026726Brassica_oleracea_var__alboglabraESTVector
122027029Brassica_oleracea_var__alboglabraESTVector
122027148Brassica_oleracea_var__alboglabraESTVector
122027244Brassica_oleracea_var__alboglabraESTVector
122027386Brassica_oleracea_var__alboglabraESTVector
122027798Brassica_oleracea_var__alboglabraESTVector
122027979Brassica_oleracea_var__alboglabraESTVector
122028078Brassica_oleracea_var__alboglabraESTVector
122028601Brassica_oleracea_var__alboglabraESTVector
122028679Brassica_oleracea_var__alboglabraESTVector
122028950Brassica_oleracea_var__alboglabraESTVector
122029543Brassica_oleracea_var__alboglabraESTVector
122029766Brassica_oleracea_var__alboglabraESTVector
122030676Brassica_oleracea_var__alboglabraESTVector
122030688Brassica_oleracea_var__alboglabraESTVector
122030693Brassica_oleracea_var__alboglabraESTVector
122030696Brassica_oleracea_var__alboglabraESTVector
122031038Brassica_oleracea_var__alboglabraESTVector
122031361Brassica_oleracea_var__alboglabraESTVector
122031391Brassica_oleracea_var__alboglabraESTVector
122031472Brassica_oleracea_var__alboglabraESTVector
122032143Brassica_oleracea_var__alboglabraESTVector
122032237Brassica_oleracea_var__alboglabraESTVector
122032491Brassica_oleracea_var__alboglabraESTVector
122032623Brassica_oleracea_var__alboglabraESTVector
122032638Brassica_oleracea_var__alboglabraESTVector
122032989Brassica_oleracea_var__alboglabraESTVector
122033105Brassica_oleracea_var__alboglabraESTVector
122033175Brassica_oleracea_var__alboglabraESTVector
122033462Brassica_oleracea_var__alboglabraESTVector
122033563Brassica_oleracea_var__alboglabraESTVector
122033636Brassica_oleracea_var__alboglabraESTVector
122034042Brassica_oleracea_var__alboglabraESTVector
122034183Brassica_oleracea_var__alboglabraESTVector
122034432Brassica_oleracea_var__alboglabraESTVector
122034564Brassica_oleracea_var__alboglabraESTVector
122034747Brassica_oleracea_var__alboglabraESTVector
122034905Brassica_oleracea_var__alboglabraESTVector
122035068Brassica_oleracea_var__alboglabraESTVector
122035184Brassica_oleracea_var__alboglabraESTVector
122035282Brassica_oleracea_var__alboglabraESTVector
122035374Brassica_oleracea_var__alboglabraESTVector
122035538Brassica_oleracea_var__alboglabraESTVector
122035643Brassica_oleracea_var__alboglabraESTVector
122035653Brassica_oleracea_var__alboglabraESTVector
122035681Brassica_oleracea_var__alboglabraESTVector
122035847Brassica_oleracea_var__alboglabraESTVector
122035916Brassica_oleracea_var__alboglabraESTVector
122036119Brassica_oleracea_var__alboglabraESTVector
122036120Brassica_oleracea_var__alboglabraESTVector
122036227Brassica_oleracea_var__alboglabraESTVector
122036237Brassica_oleracea_var__alboglabraESTVector
122036239Brassica_oleracea_var__alboglabraESTVector
122036307Brassica_oleracea_var__alboglabraESTVector
122036327Brassica_oleracea_var__alboglabraESTVector
122036390Brassica_oleracea_var__alboglabraESTVector
122036768Brassica_oleracea_var__alboglabraESTVector
122036938Brassica_oleracea_var__alboglabraESTVector
122037086Brassica_oleracea_var__alboglabraESTVector
122037094Brassica_oleracea_var__alboglabraESTVector
122037142Brassica_oleracea_var__alboglabraESTVector
122037146Brassica_oleracea_var__alboglabraESTVector
122037242Brassica_oleracea_var__alboglabraESTVector
122037276Brassica_oleracea_var__alboglabraESTVector
122037493Brassica_oleracea_var__alboglabraESTVector
122037554Brassica_oleracea_var__alboglabraESTVector
122037592Brassica_oleracea_var__alboglabraESTVector
122037615Brassica_oleracea_var__alboglabraESTVector
122037666Brassica_oleracea_var__alboglabraESTVector
122037672Brassica_oleracea_var__alboglabraESTVector
122037721Brassica_oleracea_var__alboglabraESTVector
122037779Brassica_oleracea_var__alboglabraESTVector
122037866Brassica_oleracea_var__alboglabraESTVector
122037886Brassica_oleracea_var__alboglabraESTVector
122037890Brassica_oleracea_var__alboglabraESTVector
122037896Brassica_oleracea_var__alboglabraESTVector
122037899Brassica_oleracea_var__alboglabraESTVector
122037945Brassica_oleracea_var__alboglabraESTVector
122037992Brassica_oleracea_var__alboglabraESTVector
122038032Brassica_oleracea_var__alboglabraESTVector
122038133Brassica_oleracea_var__alboglabraESTVector

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