Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 150907075 | Brassica_oleracea | EST | Vector |
| 150907096 | Brassica_oleracea | EST | Vector |
| 150907108 | Brassica_oleracea | EST | Vector |
| 150907162 | Brassica_oleracea | EST | Vector |
| 150907367 | Brassica_oleracea | EST | Vector |
| 150907377 | Brassica_oleracea | EST | Vector |
| 150907414 | Brassica_oleracea | EST | Vector |
| 150907426 | Brassica_oleracea | EST | Vector |
| 150907445 | Brassica_oleracea | EST | Vector |
| 150907462 | Brassica_oleracea | EST | Vector |
| 150907542 | Brassica_oleracea | EST | Vector |
| 150907569 | Brassica_oleracea | EST | Vector |
| 150907658 | Brassica_oleracea | EST | Vector |
| 150907662 | Brassica_oleracea | EST | Vector |
| 150907686 | Brassica_oleracea | EST | Vector |
| 150907705 | Brassica_oleracea | EST | Vector |
| 150907734 | Brassica_oleracea | EST | Vector |
| 150907770 | Brassica_oleracea | EST | Vector |
| 150907781 | Brassica_oleracea | EST | Vector |
| 150907814 | Brassica_oleracea | EST | Vector |
| 150907822 | Brassica_oleracea | EST | Vector |
| 150907826 | Brassica_oleracea | EST | Vector |
| 150907912 | Brassica_oleracea | EST | Vector |
| 150907918 | Brassica_oleracea | EST | Vector |
| 150907928 | Brassica_oleracea | EST | Vector |
| 150907934 | Brassica_oleracea | EST | Vector |
| 150907950 | Brassica_oleracea | EST | Vector |
| 150908013 | Brassica_oleracea | EST | Vector |
| 150908029 | Brassica_oleracea | EST | Vector |
| 150908042 | Brassica_oleracea | EST | Vector |
| 150908046 | Brassica_oleracea | EST | Vector |
| 150908055 | Brassica_oleracea | EST | Vector |
| 150908056 | Brassica_oleracea | EST | Vector |
| 150908068 | Brassica_oleracea | EST | Vector |
| 150908106 | Brassica_oleracea | EST | Vector |
| 150908111 | Brassica_oleracea | EST | Vector |
| 150908334 | Brassica_oleracea | EST | Vector |
| 150908358 | Brassica_oleracea | EST | Vector |
| 150908364 | Brassica_oleracea | EST | Vector |
| 150908402 | Brassica_oleracea | EST | Vector |
| 150908423 | Brassica_oleracea | EST | Vector |
| 150908449 | Brassica_oleracea | EST | Vector |
| 150908453 | Brassica_oleracea | EST | Vector |
| 150908477 | Brassica_oleracea | EST | Vector |
| 150908553 | Brassica_oleracea | EST | Vector |
| 150908614 | Brassica_oleracea | EST | Vector |
| 150908646 | Brassica_oleracea | EST | Vector |
| 150908732 | Brassica_oleracea | EST | Vector |
| 150908788 | Brassica_oleracea | EST | Vector |
| 150908797 | Brassica_oleracea | EST | Vector |
| 150908837 | Brassica_oleracea | EST | Vector |
| 150908838 | Brassica_oleracea | EST | Vector |
| 150908849 | Brassica_oleracea | EST | Vector |
| 150908868 | Brassica_oleracea | EST | Vector |
| 150908877 | Brassica_oleracea | EST | Vector |
| 150908945 | Brassica_oleracea | EST | Vector |
| 150909035 | Brassica_oleracea | EST | Vector |
| 150909073 | Brassica_oleracea | EST | Vector |
| 150909133 | Brassica_oleracea | EST | Vector |
| 150909136 | Brassica_oleracea | EST | Vector |
| 150909147 | Brassica_oleracea | EST | Vector |
| 150909256 | Brassica_oleracea | EST | Vector |
| 150909276 | Brassica_oleracea | EST | Vector |
| 150909463 | Brassica_oleracea | EST | Vector |
| 150910368 | Brassica_oleracea | EST | Vector |
| 150910549 | Brassica_oleracea | EST | Vector |
| 150910787 | Brassica_oleracea | EST | Vector |
| 150911098 | Brassica_oleracea | EST | Vector |
| 150911364 | Brassica_oleracea | EST | Vector |
| 150911444 | Brassica_oleracea | EST | Vector |
| 150911858 | Brassica_oleracea | EST | Vector |
| 150912290 | Brassica_oleracea | EST | Vector |
| 150912428 | Brassica_oleracea | EST | Vector |
| 150914614 | Brassica_oleracea | EST | Vector |
| 150915292 | Brassica_oleracea | EST | Vector |
| 150915971 | Brassica_oleracea | EST | Vector |
| 150916639 | Brassica_oleracea | EST | Vector |
| 150917089 | Brassica_oleracea | EST | Vector |
| 150917157 | Brassica_oleracea | EST | Vector |
| 150917200 | Brassica_oleracea | EST | Vector |
| 150917241 | Brassica_oleracea | EST | Vector |
| 150917524 | Brassica_oleracea | EST | Vector |
| 150917597 | Brassica_oleracea | EST | Vector |
| 150917764 | Brassica_oleracea | EST | Vector |
| 150917925 | Brassica_oleracea | EST | Vector |
| 150918682 | Brassica_oleracea | EST | Vector |
| 150919238 | Brassica_oleracea | EST | Vector |
| 150919450 | Brassica_oleracea | EST | Vector |
| 150919466 | Brassica_oleracea | EST | Vector |
| 150919497 | Brassica_oleracea | EST | Vector |
| 150919511 | Brassica_oleracea | EST | Vector |
| 150919512 | Brassica_oleracea | EST | Vector |
| 150919514 | Brassica_oleracea | EST | Vector |
| 56957237 | Brassica_oleracea | EST | Vector |
| 150129456 | Brassica_oleracea | EST | Vector |
| 150129535 | Brassica_oleracea | EST | Vector |
| 150129561 | Brassica_oleracea | EST | Vector |
| 150129575 | Brassica_oleracea | EST | Vector |
| 150129580 | Brassica_oleracea | EST | Vector |
| 150129619 | Brassica_oleracea | EST | Vector |