Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
258658718Brassica_nigraESTVector
258658758Brassica_nigraESTVector
258658800Brassica_nigraESTVector
258659003Brassica_nigraESTVector
258659043Brassica_nigraESTVector
258659079Brassica_nigraESTVector
258659128Brassica_nigraESTVector

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