Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 151275458 | Brassica_napus | EST | Vector |
| 151275469 | Brassica_napus | EST | Vector |
| 151275480 | Brassica_napus | EST | Vector |
| 151275495 | Brassica_napus | EST | Vector |
| 151275502 | Brassica_napus | EST | Vector |
| 151275510 | Brassica_napus | EST | Vector |
| 151275511 | Brassica_napus | EST | Vector |
| 151275523 | Brassica_napus | EST | Vector |
| 151275532 | Brassica_napus | EST | Vector |
| 151275536 | Brassica_napus | EST | Vector |
| 151275564 | Brassica_napus | EST | Vector |
| 151275570 | Brassica_napus | EST | Vector |
| 151275588 | Brassica_napus | EST | Vector |
| 151275589 | Brassica_napus | EST | Vector |
| 151275594 | Brassica_napus | EST | Vector |
| 151275606 | Brassica_napus | EST | Vector |
| 151275612 | Brassica_napus | EST | Vector |
| 151275615 | Brassica_napus | EST | Vector |
| 151275623 | Brassica_napus | EST | Vector |
| 151275635 | Brassica_napus | EST | Vector |
| 151275637 | Brassica_napus | EST | Vector |
| 151275638 | Brassica_napus | EST | Vector |
| 151275648 | Brassica_napus | EST | Vector |
| 151275649 | Brassica_napus | EST | Vector |
| 151275656 | Brassica_napus | EST | Vector |
| 151275658 | Brassica_napus | EST | Vector |
| 151275665 | Brassica_napus | EST | Vector |
| 151275680 | Brassica_napus | EST | Vector |
| 151275695 | Brassica_napus | EST | Vector |
| 151275696 | Brassica_napus | EST | Vector |
| 151275698 | Brassica_napus | EST | Vector |
| 151275706 | Brassica_napus | EST | Vector |
| 151275722 | Brassica_napus | EST | Vector |
| 151275728 | Brassica_napus | EST | Vector |
| 151275732 | Brassica_napus | EST | Vector |
| 151275756 | Brassica_napus | EST | Vector |
| 151275771 | Brassica_napus | EST | Vector |
| 151275795 | Brassica_napus | EST | Vector |
| 151275805 | Brassica_napus | EST | Vector |
| 151275812 | Brassica_napus | EST | Vector |
| 151275817 | Brassica_napus | EST | Vector |
| 151275822 | Brassica_napus | EST | Vector |
| 151275823 | Brassica_napus | EST | Vector |
| 151275831 | Brassica_napus | EST | Vector |
| 151275839 | Brassica_napus | EST | Vector |
| 151275859 | Brassica_napus | EST | Vector |
| 151275860 | Brassica_napus | EST | Vector |
| 151275879 | Brassica_napus | EST | Vector |
| 151275880 | Brassica_napus | EST | Vector |
| 151275898 | Brassica_napus | EST | Vector |
| 151275905 | Brassica_napus | EST | Vector |
| 151275938 | Brassica_napus | EST | Vector |
| 151275941 | Brassica_napus | EST | Vector |
| 151275944 | Brassica_napus | EST | Vector |
| 151275964 | Brassica_napus | EST | Vector |
| 151275965 | Brassica_napus | EST | Vector |
| 151275979 | Brassica_napus | EST | Vector |
| 151275996 | Brassica_napus | EST | Vector |
| 151275998 | Brassica_napus | EST | Vector |
| 151276001 | Brassica_napus | EST | Vector |
| 151276003 | Brassica_napus | EST | Vector |
| 151276008 | Brassica_napus | EST | Vector |
| 151276027 | Brassica_napus | EST | Vector |
| 151276028 | Brassica_napus | EST | Vector |
| 151276045 | Brassica_napus | EST | Vector |
| 151276049 | Brassica_napus | EST | Vector |
| 151276072 | Brassica_napus | EST | Vector |
| 151276077 | Brassica_napus | EST | Vector |
| 151276094 | Brassica_napus | EST | Vector |
| 151276104 | Brassica_napus | EST | Vector |
| 151276121 | Brassica_napus | EST | Vector |
| 151276132 | Brassica_napus | EST | Vector |
| 151276140 | Brassica_napus | EST | Vector |
| 151276148 | Brassica_napus | EST | Vector |
| 151276152 | Brassica_napus | EST | Vector |
| 151276153 | Brassica_napus | EST | Vector |
| 151276158 | Brassica_napus | EST | Vector |
| 151276169 | Brassica_napus | EST | Vector |
| 151276176 | Brassica_napus | EST | Vector |
| 151276179 | Brassica_napus | EST | Vector |
| 151276188 | Brassica_napus | EST | Vector |
| 151276193 | Brassica_napus | EST | Vector |
| 151276200 | Brassica_napus | EST | Vector |
| 151276208 | Brassica_napus | EST | Vector |
| 151276212 | Brassica_napus | EST | Vector |
| 151276216 | Brassica_napus | EST | Vector |
| 151276220 | Brassica_napus | EST | Vector |
| 151276229 | Brassica_napus | EST | Vector |
| 151276235 | Brassica_napus | EST | Vector |
| 151276240 | Brassica_napus | EST | Vector |
| 151276241 | Brassica_napus | EST | Vector |
| 151276243 | Brassica_napus | EST | Vector |
| 151276247 | Brassica_napus | EST | Vector |
| 151276259 | Brassica_napus | EST | Vector |
| 151276263 | Brassica_napus | EST | Vector |
| 151276298 | Brassica_napus | EST | Vector |
| 151276307 | Brassica_napus | EST | Vector |
| 151276313 | Brassica_napus | EST | Vector |
| 151276316 | Brassica_napus | EST | Vector |
| 151276333 | Brassica_napus | EST | Vector |