Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



Sequence ID Organism Sequence Type Contamination Type
151275458Brassica_napusESTVector
151275469Brassica_napusESTVector
151275480Brassica_napusESTVector
151275495Brassica_napusESTVector
151275502Brassica_napusESTVector
151275510Brassica_napusESTVector
151275511Brassica_napusESTVector
151275523Brassica_napusESTVector
151275532Brassica_napusESTVector
151275536Brassica_napusESTVector
151275564Brassica_napusESTVector
151275570Brassica_napusESTVector
151275588Brassica_napusESTVector
151275589Brassica_napusESTVector
151275594Brassica_napusESTVector
151275606Brassica_napusESTVector
151275612Brassica_napusESTVector
151275615Brassica_napusESTVector
151275623Brassica_napusESTVector
151275635Brassica_napusESTVector
151275637Brassica_napusESTVector
151275638Brassica_napusESTVector
151275648Brassica_napusESTVector
151275649Brassica_napusESTVector
151275656Brassica_napusESTVector
151275658Brassica_napusESTVector
151275665Brassica_napusESTVector
151275680Brassica_napusESTVector
151275695Brassica_napusESTVector
151275696Brassica_napusESTVector
151275698Brassica_napusESTVector
151275706Brassica_napusESTVector
151275722Brassica_napusESTVector
151275728Brassica_napusESTVector
151275732Brassica_napusESTVector
151275756Brassica_napusESTVector
151275771Brassica_napusESTVector
151275795Brassica_napusESTVector
151275805Brassica_napusESTVector
151275812Brassica_napusESTVector
151275817Brassica_napusESTVector
151275822Brassica_napusESTVector
151275823Brassica_napusESTVector
151275831Brassica_napusESTVector
151275839Brassica_napusESTVector
151275859Brassica_napusESTVector
151275860Brassica_napusESTVector
151275879Brassica_napusESTVector
151275880Brassica_napusESTVector
151275898Brassica_napusESTVector
151275905Brassica_napusESTVector
151275938Brassica_napusESTVector
151275941Brassica_napusESTVector
151275944Brassica_napusESTVector
151275964Brassica_napusESTVector
151275965Brassica_napusESTVector
151275979Brassica_napusESTVector
151275996Brassica_napusESTVector
151275998Brassica_napusESTVector
151276001Brassica_napusESTVector
151276003Brassica_napusESTVector
151276008Brassica_napusESTVector
151276027Brassica_napusESTVector
151276028Brassica_napusESTVector
151276045Brassica_napusESTVector
151276049Brassica_napusESTVector
151276072Brassica_napusESTVector
151276077Brassica_napusESTVector
151276094Brassica_napusESTVector
151276104Brassica_napusESTVector
151276121Brassica_napusESTVector
151276132Brassica_napusESTVector
151276140Brassica_napusESTVector
151276148Brassica_napusESTVector
151276152Brassica_napusESTVector
151276153Brassica_napusESTVector
151276158Brassica_napusESTVector
151276169Brassica_napusESTVector
151276176Brassica_napusESTVector
151276179Brassica_napusESTVector
151276188Brassica_napusESTVector
151276193Brassica_napusESTVector
151276200Brassica_napusESTVector
151276208Brassica_napusESTVector
151276212Brassica_napusESTVector
151276216Brassica_napusESTVector
151276220Brassica_napusESTVector
151276229Brassica_napusESTVector
151276235Brassica_napusESTVector
151276240Brassica_napusESTVector
151276241Brassica_napusESTVector
151276243Brassica_napusESTVector
151276247Brassica_napusESTVector
151276259Brassica_napusESTVector
151276263Brassica_napusESTVector
151276298Brassica_napusESTVector
151276307Brassica_napusESTVector
151276313Brassica_napusESTVector
151276316Brassica_napusESTVector
151276333Brassica_napusESTVector

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