Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
45650356Brassica_junceaESTVector
45650357Brassica_junceaESTVector
45650359Brassica_junceaESTVector
258658402Brassica_junceaESTVector
258657611Brassica_junceaESTVector
111038240Brassica_junceaESTVector

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