Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 150938856 | Brassica_carinata | EST | Vector |
| 150938876 | Brassica_carinata | EST | Vector |
| 150938909 | Brassica_carinata | EST | Vector |
| 150938953 | Brassica_carinata | EST | Vector |
| 150938985 | Brassica_carinata | EST | Vector |
| 150140125 | Brassica_carinata | EST | Vector |
| 150140142 | Brassica_carinata | EST | Vector |
| 150140151 | Brassica_carinata | EST | Vector |
| 150140153 | Brassica_carinata | EST | Vector |
| 150140178 | Brassica_carinata | EST | Vector |
| 150140183 | Brassica_carinata | EST | Vector |
| 150140184 | Brassica_carinata | EST | Vector |
| 150140190 | Brassica_carinata | EST | Vector |
| 150140195 | Brassica_carinata | EST | Vector |
| 150140208 | Brassica_carinata | EST | Vector |
| 150140209 | Brassica_carinata | EST | Vector |
| 150140225 | Brassica_carinata | EST | Vector |
| 150140238 | Brassica_carinata | EST | Vector |
| 150140251 | Brassica_carinata | EST | Vector |
| 150140265 | Brassica_carinata | EST | Vector |
| 150140273 | Brassica_carinata | EST | Vector |
| 150145115 | Brassica_carinata | EST | Vector |
| 150145116 | Brassica_carinata | EST | Vector |
| 150145124 | Brassica_carinata | EST | Vector |
| 150145126 | Brassica_carinata | EST | Vector |
| 150146652 | Brassica_carinata | EST | Vector |
| 150146655 | Brassica_carinata | EST | Vector |
| 150146658 | Brassica_carinata | EST | Vector |
| 150146664 | Brassica_carinata | EST | Vector |
| 150146690 | Brassica_carinata | EST | Vector |
| 150145172 | Brassica_carinata | EST | Vector |
| 150145179 | Brassica_carinata | EST | Vector |
| 150145180 | Brassica_carinata | EST | Vector |
| 150145185 | Brassica_carinata | EST | Vector |
| 150146725 | Brassica_carinata | EST | Vector |
| 150145189 | Brassica_carinata | EST | Vector |
| 150146731 | Brassica_carinata | EST | Vector |
| 150146732 | Brassica_carinata | EST | Vector |
| 150146736 | Brassica_carinata | EST | Vector |
| 150146739 | Brassica_carinata | EST | Vector |
| 150145203 | Brassica_carinata | EST | Vector |
| 150146749 | Brassica_carinata | EST | Vector |
| 150145213 | Brassica_carinata | EST | Vector |
| 150146755 | Brassica_carinata | EST | Vector |
| 150146768 | Brassica_carinata | EST | Vector |
| 150145223 | Brassica_carinata | EST | Vector |
| 150146796 | Brassica_carinata | EST | Vector |
| 150145248 | Brassica_carinata | EST | Vector |
| 150145249 | Brassica_carinata | EST | Vector |
| 150145251 | Brassica_carinata | EST | Vector |
| 150146801 | Brassica_carinata | EST | Vector |
| 150145257 | Brassica_carinata | EST | Vector |
| 150146804 | Brassica_carinata | EST | Vector |
| 150146820 | Brassica_carinata | EST | Vector |
| 150146827 | Brassica_carinata | EST | Vector |
| 150145279 | Brassica_carinata | EST | Vector |
| 150145282 | Brassica_carinata | EST | Vector |
| 150146844 | Brassica_carinata | EST | Vector |
| 150145304 | Brassica_carinata | EST | Vector |
| 150145305 | Brassica_carinata | EST | Vector |
| 150146862 | Brassica_carinata | EST | Vector |
| 150146868 | Brassica_carinata | EST | Vector |
| 150146878 | Brassica_carinata | EST | Vector |
| 150145325 | Brassica_carinata | EST | Vector |
| 150145326 | Brassica_carinata | EST | Vector |
| 150146891 | Brassica_carinata | EST | Vector |
| 150146899 | Brassica_carinata | EST | Vector |
| 150145342 | Brassica_carinata | EST | Vector |
| 150146905 | Brassica_carinata | EST | Vector |
| 150145347 | Brassica_carinata | EST | Vector |
| 150145351 | Brassica_carinata | EST | Vector |
| 150145352 | Brassica_carinata | EST | Vector |
| 150146919 | Brassica_carinata | EST | Vector |
| 150145355 | Brassica_carinata | EST | Vector |
| 150145358 | Brassica_carinata | EST | Vector |
| 150146928 | Brassica_carinata | EST | Vector |
| 150146929 | Brassica_carinata | EST | Vector |
| 150146937 | Brassica_carinata | EST | Vector |
| 150146943 | Brassica_carinata | EST | Vector |
| 150146964 | Brassica_carinata | EST | Vector |
| 150145407 | Brassica_carinata | EST | Vector |
| 150145419 | Brassica_carinata | EST | Vector |
| 150145428 | Brassica_carinata | EST | Vector |
| 150147011 | Brassica_carinata | EST | Vector |
| 150147031 | Brassica_carinata | EST | Vector |
| 150145456 | Brassica_carinata | EST | Vector |
| 150147037 | Brassica_carinata | EST | Vector |
| 150145464 | Brassica_carinata | EST | Vector |
| 150147058 | Brassica_carinata | EST | Vector |
| 150147060 | Brassica_carinata | EST | Vector |
| 150147065 | Brassica_carinata | EST | Vector |
| 150145484 | Brassica_carinata | EST | Vector |
| 150147085 | Brassica_carinata | EST | Vector |
| 150147092 | Brassica_carinata | EST | Vector |
| 150145507 | Brassica_carinata | EST | Vector |
| 150147099 | Brassica_carinata | EST | Vector |
| 150147104 | Brassica_carinata | EST | Vector |
| 150145515 | Brassica_carinata | EST | Vector |
| 150145519 | Brassica_carinata | EST | Vector |
| 150145521 | Brassica_carinata | EST | Vector |