Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 78000491 | Brachypodium_distachyon | EST | Vector |
| 78000492 | Brachypodium_distachyon | EST | Vector |
| 78000493 | Brachypodium_distachyon | EST | Vector |
| 78000494 | Brachypodium_distachyon | EST | Vector |
| 78000495 | Brachypodium_distachyon | EST | Vector |
| 78000496 | Brachypodium_distachyon | EST | Vector |
| 78000497 | Brachypodium_distachyon | EST | Vector |
| 78000499 | Brachypodium_distachyon | EST | Vector |
| 78000500 | Brachypodium_distachyon | EST | Vector |
| 78000501 | Brachypodium_distachyon | EST | Vector |
| 78000502 | Brachypodium_distachyon | EST | Vector |
| 78000503 | Brachypodium_distachyon | EST | Vector |
| 78000504 | Brachypodium_distachyon | EST | Vector |
| 78000505 | Brachypodium_distachyon | EST | Vector |
| 78000506 | Brachypodium_distachyon | EST | Vector |
| 78000507 | Brachypodium_distachyon | EST | Vector |
| 78000508 | Brachypodium_distachyon | EST | Vector |
| 78000509 | Brachypodium_distachyon | EST | Vector |
| 78000512 | Brachypodium_distachyon | EST | Vector |
| 78000513 | Brachypodium_distachyon | EST | Vector |
| 78000514 | Brachypodium_distachyon | EST | Vector |
| 78000515 | Brachypodium_distachyon | EST | Vector |
| 78000516 | Brachypodium_distachyon | EST | Vector |
| 78000517 | Brachypodium_distachyon | EST | Vector |
| 78000518 | Brachypodium_distachyon | EST | Vector |
| 78000519 | Brachypodium_distachyon | EST | Vector |
| 78000520 | Brachypodium_distachyon | EST | Vector |
| 78000521 | Brachypodium_distachyon | EST | Vector |
| 78000522 | Brachypodium_distachyon | EST | Vector |
| 78000523 | Brachypodium_distachyon | EST | Vector |
| 78000524 | Brachypodium_distachyon | EST | Vector |
| 78000525 | Brachypodium_distachyon | EST | Vector |
| 78000526 | Brachypodium_distachyon | EST | Vector |
| 78000527 | Brachypodium_distachyon | EST | Vector |
| 78000528 | Brachypodium_distachyon | EST | Vector |
| 78000529 | Brachypodium_distachyon | EST | Vector |
| 78000530 | Brachypodium_distachyon | EST | Vector |
| 78000532 | Brachypodium_distachyon | EST | Vector |
| 78000533 | Brachypodium_distachyon | EST | Vector |
| 78000534 | Brachypodium_distachyon | EST | Vector |
| 78000535 | Brachypodium_distachyon | EST | Vector |
| 78000536 | Brachypodium_distachyon | EST | Vector |
| 78000537 | Brachypodium_distachyon | EST | Vector |
| 78000538 | Brachypodium_distachyon | EST | Vector |
| 78000539 | Brachypodium_distachyon | EST | Vector |
| 78000540 | Brachypodium_distachyon | EST | Vector |
| 78000541 | Brachypodium_distachyon | EST | Vector |
| 78000542 | Brachypodium_distachyon | EST | Vector |
| 78000543 | Brachypodium_distachyon | EST | Vector |
| 78000544 | Brachypodium_distachyon | EST | Vector |
| 78000545 | Brachypodium_distachyon | EST | Vector |
| 78000546 | Brachypodium_distachyon | EST | Vector |
| 78000547 | Brachypodium_distachyon | EST | Vector |
| 78000548 | Brachypodium_distachyon | EST | Vector |
| 78000549 | Brachypodium_distachyon | EST | Vector |
| 78000550 | Brachypodium_distachyon | EST | Vector |
| 78000551 | Brachypodium_distachyon | EST | Vector |
| 78000552 | Brachypodium_distachyon | EST | Vector |
| 78000554 | Brachypodium_distachyon | EST | Vector |
| 78000555 | Brachypodium_distachyon | EST | Vector |
| 78000556 | Brachypodium_distachyon | EST | Vector |
| 78000557 | Brachypodium_distachyon | EST | Vector |
| 78000558 | Brachypodium_distachyon | EST | Vector |
| 78000559 | Brachypodium_distachyon | EST | Vector |
| 78000560 | Brachypodium_distachyon | EST | Vector |
| 78000561 | Brachypodium_distachyon | EST | Vector |
| 78000562 | Brachypodium_distachyon | EST | Vector |
| 78000563 | Brachypodium_distachyon | EST | Vector |
| 78000564 | Brachypodium_distachyon | EST | Vector |
| 78000565 | Brachypodium_distachyon | EST | Vector |
| 78000566 | Brachypodium_distachyon | EST | Vector |
| 78000567 | Brachypodium_distachyon | EST | Vector |
| 78000569 | Brachypodium_distachyon | EST | Vector |
| 78000570 | Brachypodium_distachyon | EST | Vector |
| 78000571 | Brachypodium_distachyon | EST | Vector |
| 78000572 | Brachypodium_distachyon | EST | Vector |
| 78000573 | Brachypodium_distachyon | EST | Vector |
| 78000574 | Brachypodium_distachyon | EST | Vector |
| 78000575 | Brachypodium_distachyon | EST | Vector |
| 78000577 | Brachypodium_distachyon | EST | Vector |
| 78000578 | Brachypodium_distachyon | EST | Vector |
| 78000579 | Brachypodium_distachyon | EST | Vector |
| 78000580 | Brachypodium_distachyon | EST | Vector |
| 78000581 | Brachypodium_distachyon | EST | Vector |
| 78000582 | Brachypodium_distachyon | EST | Vector |
| 78000583 | Brachypodium_distachyon | EST | Vector |
| 78000584 | Brachypodium_distachyon | EST | Vector |
| 78000585 | Brachypodium_distachyon | EST | Vector |
| 78000586 | Brachypodium_distachyon | EST | Vector |
| 78000587 | Brachypodium_distachyon | EST | Vector |
| 78000589 | Brachypodium_distachyon | EST | Vector |
| 78000590 | Brachypodium_distachyon | EST | Vector |
| 78000591 | Brachypodium_distachyon | EST | Vector |
| 78000592 | Brachypodium_distachyon | EST | Vector |
| 78000594 | Brachypodium_distachyon | EST | Vector |
| 78000596 | Brachypodium_distachyon | EST | Vector |
| 78000597 | Brachypodium_distachyon | EST | Vector |
| 78000598 | Brachypodium_distachyon | EST | Vector |
| 78000599 | Brachypodium_distachyon | EST | Vector |
| 78000600 | Brachypodium_distachyon | EST | Vector |