Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
189303065Boehmeria_niveaESTVector
189303070Boehmeria_niveaESTVector
189303074Boehmeria_niveaESTVector
189303079Boehmeria_niveaESTVector
189302944Boehmeria_niveaESTVector
189302952Boehmeria_niveaESTVector
189302956Boehmeria_niveaESTVector
189302966Boehmeria_niveaESTVector
189302985Boehmeria_niveaESTVector
189302997Boehmeria_niveaESTVector
189303007Boehmeria_niveaESTVector
189303031Boehmeria_niveaESTVector
124263280Boehmeria_niveaESTVector
124263330Boehmeria_niveaESTVector
148357988Boehmeria_niveaESTVector
148358063Boehmeria_niveaESTVector
148358065Boehmeria_niveaESTVector

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