Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
50357518Avena_sativaESTVector
50357694Avena_sativaESTVector
50357721Avena_sativaESTVector
50357848Avena_sativaESTVector
50357902Avena_sativaESTVector
50357916Avena_sativaESTVector
50358113Avena_sativaESTVector
50358128Avena_sativaESTVector
50358224Avena_sativaESTVector
50358227Avena_sativaESTVector
50358833Avena_sativaESTVector
50359126Avena_sativaESTVector
50359559Avena_sativaESTVector
50359671Avena_sativaESTVector
50359723Avena_sativaESTVector
50359769Avena_sativaESTVector
50359995Avena_sativaESTVector
50360059Avena_sativaESTVector
50360089Avena_sativaESTVector
50360200Avena_sativaESTVector
50360201Avena_sativaESTVector
50360327Avena_sativaESTVector
50360481Avena_sativaESTVector
50360514Avena_sativaESTVector
50360576Avena_sativaESTVector
50360782Avena_sativaESTVector
50360979Avena_sativaESTVector
50361088Avena_sativaESTVector
50361173Avena_sativaESTVector
50362459Avena_sativaESTVector
50362521Avena_sativaESTVector
50362851Avena_sativaESTVector
50362867Avena_sativaESTVector
50362978Avena_sativaESTVector
226980135Avena_sativaESTVector
226982431Avena_sativaESTVector

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