Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
52571807Asparagus_officinalisESTVector
52572087Asparagus_officinalisESTVector
52572997Asparagus_officinalisESTVector
52574331Asparagus_officinalisESTVector
52574458Asparagus_officinalisESTVector
52575118Asparagus_officinalisESTVector
52575619Asparagus_officinalisESTVector
52575713Asparagus_officinalisESTVector
52576834Asparagus_officinalisESTVector
52577884Asparagus_officinalisESTVector
52578176Asparagus_officinalisESTVector
52578754Asparagus_officinalisESTVector
52845235Asparagus_officinalisESTVector
52848769Asparagus_officinalisESTVector
52848945Asparagus_officinalisESTVector
67006635Asparagus_officinalisESTVector
86175878Asparagus_officinalisESTVector

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