Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
76318616Asarum_caudigerumESTVector
76318648Asarum_caudigerumESTVector
76318650Asarum_caudigerumESTVector
76318684Asarum_caudigerumESTVector
76318690Asarum_caudigerumESTVector
76318705Asarum_caudigerumESTVector
76318733Asarum_caudigerumESTVector
76318784Asarum_caudigerumESTVector
76319119Asarum_caudigerumESTVector
76319127Asarum_caudigerumESTVector
76319128Asarum_caudigerumESTVector
76319129Asarum_caudigerumESTVector
76319130Asarum_caudigerumESTVector
76319131Asarum_caudigerumESTVector
76319132Asarum_caudigerumESTVector
76319134Asarum_caudigerumESTVector
76319135Asarum_caudigerumESTVector
76319136Asarum_caudigerumESTVector

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