Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 159023969 | Artemisia_annua | EST | Vector |
| 159023711 | Artemisia_annua | EST | Vector |
| 159023852 | Artemisia_annua | EST | Vector |
| 159023860 | Artemisia_annua | EST | Vector |
| 159023881 | Artemisia_annua | EST | Vector |
| 159024002 | Artemisia_annua | EST | Vector |
| 159190285 | Artemisia_annua | EST | Vector |
| 159189944 | Artemisia_annua | EST | Vector |
| 159190800 | Artemisia_annua | EST | Vector |
| 159190834 | Artemisia_annua | EST | Vector |
| 159189791 | Artemisia_annua | EST | Vector |
| 159189868 | Artemisia_annua | EST | Vector |
| 159189920 | Artemisia_annua | EST | Vector |
| 159189996 | Artemisia_annua | EST | Vector |
| 159190011 | Artemisia_annua | EST | Vector |
| 159190096 | Artemisia_annua | EST | Vector |
| 159191456 | Artemisia_annua | EST | Vector |
| 159191248 | Artemisia_annua | EST | Vector |
| 159628867 | Artemisia_annua | EST | Vector |
| 159630417 | Artemisia_annua | EST | Vector |
| 159646633 | Artemisia_annua | EST | Vector |
| 159628876 | Artemisia_annua | EST | Vector |
| 159662918 | Artemisia_annua | EST | Vector |
| 159681113 | Artemisia_annua | EST | Vector |
| 159681114 | Artemisia_annua | EST | Vector |
| 159682075 | Artemisia_annua | EST | Vector |
| 159697670 | Artemisia_annua | EST | Vector |
| 159701771 | Artemisia_annua | EST | Vector |
| 159758956 | Artemisia_annua | EST | Vector |
| 159760215 | Artemisia_annua | EST | Vector |
| 159768329 | Artemisia_annua | EST | Vector |
| 159755114 | Artemisia_annua | EST | Vector |
| 159755972 | Artemisia_annua | EST | Vector |
| 159743699 | Artemisia_annua | EST | Vector |
| 159752836 | Artemisia_annua | EST | Vector |
| 159753869 | Artemisia_annua | EST | Vector |
| 159772863 | Artemisia_annua | EST | Vector |
| 159683253 | Artemisia_annua | EST | Vector |
| 159594665 | Artemisia_annua | EST | Vector |
| 159598507 | Artemisia_annua | EST | Vector |
| 159739286 | Artemisia_annua | EST | Vector |
| 159762281 | Artemisia_annua | EST | Vector |
| 159762707 | Artemisia_annua | EST | Vector |
| 159595895 | Artemisia_annua | EST | Vector |
| 159599753 | Artemisia_annua | EST | Vector |
| 159606444 | Artemisia_annua | EST | Vector |
| 159608849 | Artemisia_annua | EST | Vector |
| 159608850 | Artemisia_annua | EST | Vector |
| 159611308 | Artemisia_annua | EST | Vector |
| 159611316 | Artemisia_annua | EST | Vector |
| 159773266 | Artemisia_annua | EST | Vector |
| 159746186 | Artemisia_annua | EST | Vector |
| 159748325 | Artemisia_annua | EST | Vector |
| 159261379 | Artemisia_annua | EST | Vector |
| 159660375 | Artemisia_annua | EST | Vector |
| 159661642 | Artemisia_annua | EST | Vector |
| 159747279 | Artemisia_annua | EST | Vector |
| 159783495 | Artemisia_annua | EST | Vector |
| 159583429 | Artemisia_annua | EST | Vector |
| 159655371 | Artemisia_annua | EST | Vector |
| 159657598 | Artemisia_annua | EST | Vector |
| 159520780 | Artemisia_annua | EST | Vector |
| 159583445 | Artemisia_annua | EST | Vector |
| 159261410 | Artemisia_annua | EST | Vector |
| 159520795 | Artemisia_annua | EST | Vector |
| 159742764 | Artemisia_annua | EST | Vector |
| 159520838 | Artemisia_annua | EST | Vector |
| 159584558 | Artemisia_annua | EST | Vector |
| 159584559 | Artemisia_annua | EST | Vector |
| 159762271 | Artemisia_annua | EST | Vector |
| 159776183 | Artemisia_annua | EST | Vector |
| 159777827 | Artemisia_annua | EST | Vector |
| 159636427 | Artemisia_annua | EST | Vector |
| 159520894 | Artemisia_annua | EST | Vector |
| 159603848 | Artemisia_annua | EST | Vector |
| 159607672 | Artemisia_annua | EST | Vector |
| 159725364 | Artemisia_annua | EST | Vector |
| 159726380 | Artemisia_annua | EST | Vector |
| 159656557 | Artemisia_annua | EST | Vector |
| 159712581 | Artemisia_annua | EST | Vector |
| 159714376 | Artemisia_annua | EST | Vector |
| 159715303 | Artemisia_annua | EST | Vector |
| 159750466 | Artemisia_annua | EST | Vector |
| 159751173 | Artemisia_annua | EST | Vector |
| 159749446 | Artemisia_annua | EST | Vector |
| 159745274 | Artemisia_annua | EST | Vector |
| 159747330 | Artemisia_annua | EST | Vector |
| 159748417 | Artemisia_annua | EST | Vector |
| 159669615 | Artemisia_annua | EST | Vector |
| 159673110 | Artemisia_annua | EST | Vector |
| 159731324 | Artemisia_annua | EST | Vector |
| 159731325 | Artemisia_annua | EST | Vector |
| 159687028 | Artemisia_annua | EST | Vector |
| 159687032 | Artemisia_annua | EST | Vector |
| 159691894 | Artemisia_annua | EST | Vector |
| 159779034 | Artemisia_annua | EST | Vector |
| 159653278 | Artemisia_annua | EST | Vector |
| 159774337 | Artemisia_annua | EST | Vector |
| 159758583 | Artemisia_annua | EST | Vector |
| 159260654 | Artemisia_annua | EST | Vector |