Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
296546397Arachis_duranensisESTVector
296546475Arachis_duranensisESTVector
296546215Arachis_duranensisESTVector
296553744Arachis_duranensisESTVector
296553868Arachis_duranensisESTVector
296550564Arachis_duranensisESTVector
296553051Arachis_duranensisESTVector
296549521Arachis_duranensisESTVector
296549799Arachis_duranensisESTVector
296550902Arachis_duranensisESTVector
296552843Arachis_duranensisESTVector
296548140Arachis_duranensisESTVector
296548409Arachis_duranensisESTVector
296548635Arachis_duranensisESTVector
296548720Arachis_duranensisESTVector
296555890Arachis_duranensisESTVector
296556339Arachis_duranensisESTVector
296556946Arachis_duranensisESTVector
296560293Arachis_duranensisESTVector
296561119Arachis_duranensisESTVector
296563978Arachis_duranensisESTVector
296557870Arachis_duranensisESTVector
296573873Arachis_duranensisESTVector
296568380Arachis_duranensisESTVector
296569012Arachis_duranensisESTVector
296575121Arachis_duranensisESTVector

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