Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 37426619 | Arabidopsis_thaliana | EST | Vector |
| 37426666 | Arabidopsis_thaliana | EST | Vector |
| 37426776 | Arabidopsis_thaliana | EST | Vector |
| 37426778 | Arabidopsis_thaliana | EST | Vector |
| 37426893 | Arabidopsis_thaliana | EST | Vector |
| 37426894 | Arabidopsis_thaliana | EST | Vector |
| 37426918 | Arabidopsis_thaliana | EST | Vector |
| 37426936 | Arabidopsis_thaliana | EST | Vector |
| 37426938 | Arabidopsis_thaliana | EST | Vector |
| 37426991 | Arabidopsis_thaliana | EST | Vector |
| 37426993 | Arabidopsis_thaliana | EST | Vector |
| 37427061 | Arabidopsis_thaliana | EST | Vector |
| 37427115 | Arabidopsis_thaliana | EST | Vector |
| 37427117 | Arabidopsis_thaliana | EST | Vector |
| 37427119 | Arabidopsis_thaliana | EST | Vector |
| 37427135 | Arabidopsis_thaliana | EST | Vector |
| 37427136 | Arabidopsis_thaliana | EST | Vector |
| 37427199 | Arabidopsis_thaliana | EST | Vector |
| 37427200 | Arabidopsis_thaliana | EST | Vector |
| 37427234 | Arabidopsis_thaliana | EST | Vector |
| 37427261 | Arabidopsis_thaliana | EST | Vector |
| 37427267 | Arabidopsis_thaliana | EST | Vector |
| 37427280 | Arabidopsis_thaliana | EST | Vector |
| 37427353 | Arabidopsis_thaliana | EST | Vector |
| 37427365 | Arabidopsis_thaliana | EST | Vector |
| 37427389 | Arabidopsis_thaliana | EST | Vector |
| 37427401 | Arabidopsis_thaliana | EST | Vector |
| 37427468 | Arabidopsis_thaliana | EST | Vector |
| 37427478 | Arabidopsis_thaliana | EST | Vector |
| 37427486 | Arabidopsis_thaliana | EST | Vector |
| 37427499 | Arabidopsis_thaliana | EST | Vector |
| 37427521 | Arabidopsis_thaliana | EST | Vector |
| 37427533 | Arabidopsis_thaliana | EST | Vector |
| 37427539 | Arabidopsis_thaliana | EST | Vector |
| 37427566 | Arabidopsis_thaliana | EST | Vector |
| 37427580 | Arabidopsis_thaliana | EST | Vector |
| 37427601 | Arabidopsis_thaliana | EST | Vector |
| 37427717 | Arabidopsis_thaliana | EST | Vector |
| 37427749 | Arabidopsis_thaliana | EST | Vector |
| 37427768 | Arabidopsis_thaliana | EST | Vector |
| 37427802 | Arabidopsis_thaliana | EST | Vector |
| 37427806 | Arabidopsis_thaliana | EST | Vector |
| 37427808 | Arabidopsis_thaliana | EST | Vector |
| 37427810 | Arabidopsis_thaliana | EST | Vector |
| 37427859 | Arabidopsis_thaliana | EST | Vector |
| 37427867 | Arabidopsis_thaliana | EST | Vector |
| 37427933 | Arabidopsis_thaliana | EST | Vector |
| 37427952 | Arabidopsis_thaliana | EST | Vector |
| 37427990 | Arabidopsis_thaliana | EST | Vector |
| 37428001 | Arabidopsis_thaliana | EST | Vector |
| 37428026 | Arabidopsis_thaliana | EST | Vector |
| 37428030 | Arabidopsis_thaliana | EST | Vector |
| 37428100 | Arabidopsis_thaliana | EST | Vector |
| 37428137 | Arabidopsis_thaliana | EST | Vector |
| 37428175 | Arabidopsis_thaliana | EST | Vector |
| 37428232 | Arabidopsis_thaliana | EST | Vector |
| 37428243 | Arabidopsis_thaliana | EST | Vector |
| 37428281 | Arabidopsis_thaliana | EST | Vector |
| 37428299 | Arabidopsis_thaliana | EST | Vector |
| 37428310 | Arabidopsis_thaliana | EST | Vector |
| 37428312 | Arabidopsis_thaliana | EST | Vector |
| 37428324 | Arabidopsis_thaliana | EST | Vector |
| 37428326 | Arabidopsis_thaliana | EST | Vector |
| 37428400 | Arabidopsis_thaliana | EST | Vector |
| 37428402 | Arabidopsis_thaliana | EST | Vector |
| 37428513 | Arabidopsis_thaliana | EST | Vector |
| 37428517 | Arabidopsis_thaliana | EST | Vector |
| 37428564 | Arabidopsis_thaliana | EST | Vector |
| 37428585 | Arabidopsis_thaliana | EST | Vector |
| 37428635 | Arabidopsis_thaliana | EST | Vector |
| 37428723 | Arabidopsis_thaliana | EST | Vector |
| 37428725 | Arabidopsis_thaliana | EST | Vector |
| 37428806 | Arabidopsis_thaliana | EST | Vector |
| 37428808 | Arabidopsis_thaliana | EST | Vector |
| 37428822 | Arabidopsis_thaliana | EST | Vector |
| 37428958 | Arabidopsis_thaliana | EST | Vector |
| 37428961 | Arabidopsis_thaliana | EST | Vector |
| 37429017 | Arabidopsis_thaliana | EST | Vector |
| 37429050 | Arabidopsis_thaliana | EST | Vector |
| 37429081 | Arabidopsis_thaliana | EST | Vector |
| 37429091 | Arabidopsis_thaliana | EST | Vector |
| 37429122 | Arabidopsis_thaliana | EST | Vector |
| 37429132 | Arabidopsis_thaliana | EST | Vector |
| 37429136 | Arabidopsis_thaliana | EST | Vector |
| 37429145 | Arabidopsis_thaliana | EST | Vector |
| 37429153 | Arabidopsis_thaliana | EST | Vector |
| 37429157 | Arabidopsis_thaliana | EST | Vector |
| 37429169 | Arabidopsis_thaliana | EST | Vector |
| 37429175 | Arabidopsis_thaliana | EST | Vector |
| 37429203 | Arabidopsis_thaliana | EST | Vector |
| 37429205 | Arabidopsis_thaliana | EST | Vector |
| 37429207 | Arabidopsis_thaliana | EST | Vector |
| 37429249 | Arabidopsis_thaliana | EST | Vector |
| 37429271 | Arabidopsis_thaliana | EST | Vector |
| 37429277 | Arabidopsis_thaliana | EST | Vector |
| 37429281 | Arabidopsis_thaliana | EST | Vector |
| 37429325 | Arabidopsis_thaliana | EST | Vector |
| 37429386 | Arabidopsis_thaliana | EST | Vector |
| 37429418 | Arabidopsis_thaliana | EST | Vector |
| 37429434 | Arabidopsis_thaliana | EST | Vector |