Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
37427580Arabidopsis_thalianaESTBacteria
37427707Arabidopsis_thalianaESTBacteria
37428232Arabidopsis_thalianaESTBacteria
37428281Arabidopsis_thalianaESTBacteria
37428299Arabidopsis_thalianaESTBacteria
37428517Arabidopsis_thalianaESTBacteria
37429249Arabidopsis_thalianaESTBacteria
37429281Arabidopsis_thalianaESTBacteria
37429500Arabidopsis_thalianaESTBacteria
37429852Arabidopsis_thalianaESTBacteria
37430049Arabidopsis_thalianaESTBacteria
2580859Arabidopsis_thalianaESTBacteria
2580861Arabidopsis_thalianaESTBacteria
2580912Arabidopsis_thalianaESTBacteria
2580642Arabidopsis_thalianaESTBacteria
2580647Arabidopsis_thalianaESTBacteria
2580658Arabidopsis_thalianaESTBacteria
59792816Arabidopsis_thalianaESTBacteria
59792862Arabidopsis_thalianaESTBacteria
59793078Arabidopsis_thalianaESTBacteria
59793079Arabidopsis_thalianaESTBacteria
59793122Arabidopsis_thalianaESTBacteria
59793340Arabidopsis_thalianaESTBacteria
59793406Arabidopsis_thalianaESTBacteria
59793436Arabidopsis_thalianaESTBacteria
59793586Arabidopsis_thalianaESTBacteria
59793724Arabidopsis_thalianaESTBacteria
59793732Arabidopsis_thalianaESTBacteria
59793785Arabidopsis_thalianaESTBacteria
59793863Arabidopsis_thalianaESTBacteria
59793869Arabidopsis_thalianaESTBacteria
59793878Arabidopsis_thalianaESTBacteria
59793898Arabidopsis_thalianaESTBacteria
59794130Arabidopsis_thalianaESTBacteria
59794212Arabidopsis_thalianaESTBacteria
59794216Arabidopsis_thalianaESTBacteria
59794289Arabidopsis_thalianaESTBacteria
59794399Arabidopsis_thalianaESTBacteria
59794407Arabidopsis_thalianaESTBacteria
59794452Arabidopsis_thalianaESTBacteria
59794608Arabidopsis_thalianaESTBacteria
59794631Arabidopsis_thalianaESTBacteria
59794640Arabidopsis_thalianaESTBacteria
59794723Arabidopsis_thalianaESTBacteria
59794897Arabidopsis_thalianaESTBacteria
59794984Arabidopsis_thalianaESTBacteria
59795020Arabidopsis_thalianaESTBacteria
59795149Arabidopsis_thalianaESTBacteria
59795299Arabidopsis_thalianaESTBacteria
59795359Arabidopsis_thalianaESTBacteria
59795549Arabidopsis_thalianaESTBacteria
59796036Arabidopsis_thalianaESTBacteria
59796063Arabidopsis_thalianaESTBacteria
59796069Arabidopsis_thalianaESTBacteria
59796082Arabidopsis_thalianaESTBacteria
59796103Arabidopsis_thalianaESTBacteria
59796112Arabidopsis_thalianaESTBacteria
59796139Arabidopsis_thalianaESTBacteria
59796144Arabidopsis_thalianaESTBacteria
59796165Arabidopsis_thalianaESTBacteria
59796225Arabidopsis_thalianaESTBacteria
59796268Arabidopsis_thalianaESTBacteria
59796307Arabidopsis_thalianaESTBacteria
59796325Arabidopsis_thalianaESTBacteria
59796358Arabidopsis_thalianaESTBacteria
59796372Arabidopsis_thalianaESTBacteria
59796388Arabidopsis_thalianaESTBacteria
59796441Arabidopsis_thalianaESTBacteria
59796460Arabidopsis_thalianaESTBacteria
59796477Arabidopsis_thalianaESTBacteria
59834966Arabidopsis_thalianaESTBacteria
59834982Arabidopsis_thalianaESTBacteria
59835078Arabidopsis_thalianaESTBacteria
59835113Arabidopsis_thalianaESTBacteria
59835116Arabidopsis_thalianaESTBacteria
59835140Arabidopsis_thalianaESTBacteria
59835159Arabidopsis_thalianaESTBacteria
59835197Arabidopsis_thalianaESTBacteria
59835209Arabidopsis_thalianaESTBacteria
59835217Arabidopsis_thalianaESTBacteria
59835447Arabidopsis_thalianaESTBacteria
59835469Arabidopsis_thalianaESTBacteria
59835598Arabidopsis_thalianaESTBacteria
59835806Arabidopsis_thalianaESTBacteria
59835847Arabidopsis_thalianaESTBacteria
59835889Arabidopsis_thalianaESTBacteria
59835903Arabidopsis_thalianaESTBacteria
59835947Arabidopsis_thalianaESTBacteria
59835960Arabidopsis_thalianaESTBacteria
59836039Arabidopsis_thalianaESTBacteria
59836064Arabidopsis_thalianaESTBacteria
59836149Arabidopsis_thalianaESTBacteria
59836165Arabidopsis_thalianaESTBacteria
59836209Arabidopsis_thalianaESTBacteria
59836288Arabidopsis_thalianaESTBacteria
59836299Arabidopsis_thalianaESTBacteria
59836304Arabidopsis_thalianaESTBacteria
59836313Arabidopsis_thalianaESTBacteria
59836320Arabidopsis_thalianaESTBacteria
59836357Arabidopsis_thalianaESTBacteria

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