Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
28951378Arabidopsis_lyrataESTVector
28951469Arabidopsis_lyrataESTVector
28951513Arabidopsis_lyrataESTVector
28951523Arabidopsis_lyrataESTVector
28951551Arabidopsis_lyrataESTVector
28951635Arabidopsis_lyrataESTVector
28951689Arabidopsis_lyrataESTVector
28951808Arabidopsis_lyrataESTVector

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