Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
126565531Ammopiptanthus_mongolicusESTBacteria
225907571Ammopiptanthus_mongolicusESTBacteria
225907575Ammopiptanthus_mongolicusESTBacteria
225907578Ammopiptanthus_mongolicusESTBacteria
225907579Ammopiptanthus_mongolicusESTBacteria
225907594Ammopiptanthus_mongolicusESTBacteria
225907599Ammopiptanthus_mongolicusESTBacteria
225907606Ammopiptanthus_mongolicusESTBacteria
225907617Ammopiptanthus_mongolicusESTBacteria
225907628Ammopiptanthus_mongolicusESTBacteria

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