Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 255779129 | Ambrosia_trifida | EST | Vector |
| 255779132 | Ambrosia_trifida | EST | Vector |
| 255779140 | Ambrosia_trifida | EST | Vector |
| 255779147 | Ambrosia_trifida | EST | Vector |
| 255779148 | Ambrosia_trifida | EST | Vector |
| 255779167 | Ambrosia_trifida | EST | Vector |
| 255779173 | Ambrosia_trifida | EST | Vector |
| 255779176 | Ambrosia_trifida | EST | Vector |
| 255779177 | Ambrosia_trifida | EST | Vector |
| 255779178 | Ambrosia_trifida | EST | Vector |
| 255779180 | Ambrosia_trifida | EST | Vector |
| 255779184 | Ambrosia_trifida | EST | Vector |
| 255779186 | Ambrosia_trifida | EST | Vector |
| 255779197 | Ambrosia_trifida | EST | Vector |
| 255779214 | Ambrosia_trifida | EST | Vector |
| 255779219 | Ambrosia_trifida | EST | Vector |
| 255779221 | Ambrosia_trifida | EST | Vector |
| 255779232 | Ambrosia_trifida | EST | Vector |
| 255779236 | Ambrosia_trifida | EST | Vector |
| 255779237 | Ambrosia_trifida | EST | Vector |
| 255779242 | Ambrosia_trifida | EST | Vector |
| 255779243 | Ambrosia_trifida | EST | Vector |
| 255779247 | Ambrosia_trifida | EST | Vector |
| 255779256 | Ambrosia_trifida | EST | Vector |
| 255779258 | Ambrosia_trifida | EST | Vector |
| 255779265 | Ambrosia_trifida | EST | Vector |
| 255779268 | Ambrosia_trifida | EST | Vector |
| 255779284 | Ambrosia_trifida | EST | Vector |
| 255779287 | Ambrosia_trifida | EST | Vector |
| 255779300 | Ambrosia_trifida | EST | Vector |
| 255779301 | Ambrosia_trifida | EST | Vector |
| 255779305 | Ambrosia_trifida | EST | Vector |
| 255779309 | Ambrosia_trifida | EST | Vector |
| 255779316 | Ambrosia_trifida | EST | Vector |
| 255779317 | Ambrosia_trifida | EST | Vector |
| 255779318 | Ambrosia_trifida | EST | Vector |
| 154183305 | Ambrosia_trifida | EST | Vector |
| 190607140 | Ambrosia_trifida | EST | Vector |
| 190607018 | Ambrosia_trifida | EST | Vector |
| 190607019 | Ambrosia_trifida | EST | Vector |
| 190607020 | Ambrosia_trifida | EST | Vector |
| 190607021 | Ambrosia_trifida | EST | Vector |
| 190607022 | Ambrosia_trifida | EST | Vector |
| 190607024 | Ambrosia_trifida | EST | Vector |
| 190607027 | Ambrosia_trifida | EST | Vector |
| 190607028 | Ambrosia_trifida | EST | Vector |
| 190607034 | Ambrosia_trifida | EST | Vector |
| 190607044 | Ambrosia_trifida | EST | Vector |
| 190607053 | Ambrosia_trifida | EST | Vector |
| 190607070 | Ambrosia_trifida | EST | Vector |
| 190607075 | Ambrosia_trifida | EST | Vector |
| 190607077 | Ambrosia_trifida | EST | Vector |
| 190607078 | Ambrosia_trifida | EST | Vector |
| 190607081 | Ambrosia_trifida | EST | Vector |
| 190607083 | Ambrosia_trifida | EST | Vector |
| 190607084 | Ambrosia_trifida | EST | Vector |
| 190607087 | Ambrosia_trifida | EST | Vector |
| 190607091 | Ambrosia_trifida | EST | Vector |
| 190607097 | Ambrosia_trifida | EST | Vector |
| 190607103 | Ambrosia_trifida | EST | Vector |
| 190607107 | Ambrosia_trifida | EST | Vector |
| 190607108 | Ambrosia_trifida | EST | Vector |
| 190607113 | Ambrosia_trifida | EST | Vector |
| 190607118 | Ambrosia_trifida | EST | Vector |
| 190607123 | Ambrosia_trifida | EST | Vector |
| 190607126 | Ambrosia_trifida | EST | Vector |
| 343176791 | Ambrosia_trifida | EST | Vector |
| 343176795 | Ambrosia_trifida | EST | Vector |
| 343176805 | Ambrosia_trifida | EST | Vector |
| 343176813 | Ambrosia_trifida | EST | Vector |
| 343176814 | Ambrosia_trifida | EST | Vector |
| 343176816 | Ambrosia_trifida | EST | Vector |
| 343176821 | Ambrosia_trifida | EST | Vector |
| 343176822 | Ambrosia_trifida | EST | Vector |
| 343176825 | Ambrosia_trifida | EST | Vector |
| 343176832 | Ambrosia_trifida | EST | Vector |
| 343176836 | Ambrosia_trifida | EST | Vector |
| 343176848 | Ambrosia_trifida | EST | Vector |
| 343176853 | Ambrosia_trifida | EST | Vector |
| 343176856 | Ambrosia_trifida | EST | Vector |
| 343176862 | Ambrosia_trifida | EST | Vector |
| 343176866 | Ambrosia_trifida | EST | Vector |
| 343176871 | Ambrosia_trifida | EST | Vector |
| 296281731 | Ambrosia_trifida | EST | Vector |
| 296281738 | Ambrosia_trifida | EST | Vector |
| 296281742 | Ambrosia_trifida | EST | Vector |
| 296281743 | Ambrosia_trifida | EST | Vector |
| 296281745 | Ambrosia_trifida | EST | Vector |
| 296281758 | Ambrosia_trifida | EST | Vector |
| 296281761 | Ambrosia_trifida | EST | Vector |
| 296281767 | Ambrosia_trifida | EST | Vector |
| 296281775 | Ambrosia_trifida | EST | Vector |
| 296281779 | Ambrosia_trifida | EST | Vector |
| 296281808 | Ambrosia_trifida | EST | Vector |
| 296281809 | Ambrosia_trifida | EST | Vector |
| 296281810 | Ambrosia_trifida | EST | Vector |
| 296281816 | Ambrosia_trifida | EST | Vector |
| 296281818 | Ambrosia_trifida | EST | Vector |
| 296281827 | Ambrosia_trifida | EST | Vector |
| 296281832 | Ambrosia_trifida | EST | Vector |