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EST Assemblies (PUTs)

Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

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Sequence ID	Organism	Sequence Type	Contamination Type
51366909	Amborella_trichopoda	EST	Vector
51367831	Amborella_trichopoda	EST	Vector
51367867	Amborella_trichopoda	EST	Vector
51371792	Amborella_trichopoda	EST	Vector
42636716	Amborella_trichopoda	EST	Vector
42637728	Amborella_trichopoda	EST	Vector
42642823	Amborella_trichopoda	EST	Vector
42644340	Amborella_trichopoda	EST	Vector
42647795	Amborella_trichopoda	EST	Vector
42648778	Amborella_trichopoda	EST	Vector
42650108	Amborella_trichopoda	EST	Vector
42651090	Amborella_trichopoda	EST	Vector
42651272	Amborella_trichopoda	EST	Vector
42654418	Amborella_trichopoda	EST	Vector
42654538	Amborella_trichopoda	EST	Vector
51357429	Amborella_trichopoda	EST	Vector
164614914	Amborella_trichopoda	EST	Vector
164615356	Amborella_trichopoda	EST	Vector
164615821	Amborella_trichopoda	EST	Vector
164615165	Amborella_trichopoda	EST	Vector
164615540	Amborella_trichopoda	EST	Vector
164615576	Amborella_trichopoda	EST	Vector
164615694	Amborella_trichopoda	EST	Vector
164615235	Amborella_trichopoda	EST	Vector
164616627	Amborella_trichopoda	EST	Vector
164616519	Amborella_trichopoda	EST	Vector
164617159	Amborella_trichopoda	EST	Vector
164617504	Amborella_trichopoda	EST	Vector
164617613	Amborella_trichopoda	EST	Vector
164617044	Amborella_trichopoda	EST	Vector
164617911	Amborella_trichopoda	EST	Vector
164618481	Amborella_trichopoda	EST	Vector
164619109	Amborella_trichopoda	EST	Vector
164619125	Amborella_trichopoda	EST	Vector
164619287	Amborella_trichopoda	EST	Vector
164619444	Amborella_trichopoda	EST	Vector
164620122	Amborella_trichopoda	EST	Vector
164620243	Amborella_trichopoda	EST	Vector
164619803	Amborella_trichopoda	EST	Vector
164620261	Amborella_trichopoda	EST	Vector
164620676	Amborella_trichopoda	EST	Vector
164620691	Amborella_trichopoda	EST	Vector
164621265	Amborella_trichopoda	EST	Vector
164621669	Amborella_trichopoda	EST	Vector
164621680	Amborella_trichopoda	EST	Vector
164622506	Amborella_trichopoda	EST	Vector
164623655	Amborella_trichopoda	EST	Vector
164623458	Amborella_trichopoda	EST	Vector
164623459	Amborella_trichopoda	EST	Vector
164623489	Amborella_trichopoda	EST	Vector
164623669	Amborella_trichopoda	EST	Vector
164623762	Amborella_trichopoda	EST	Vector
164623856	Amborella_trichopoda	EST	Vector
164623866	Amborella_trichopoda	EST	Vector
164623940	Amborella_trichopoda	EST	Vector
164623943	Amborella_trichopoda	EST	Vector
164623800	Amborella_trichopoda	EST	Vector
164624143	Amborella_trichopoda	EST	Vector
164624194	Amborella_trichopoda	EST	Vector
164624244	Amborella_trichopoda	EST	Vector
164624260	Amborella_trichopoda	EST	Vector
164624262	Amborella_trichopoda	EST	Vector
164624124	Amborella_trichopoda	EST	Vector
164624340	Amborella_trichopoda	EST	Vector
164624380	Amborella_trichopoda	EST	Vector
164624392	Amborella_trichopoda	EST	Vector
164624443	Amborella_trichopoda	EST	Vector
164624487	Amborella_trichopoda	EST	Vector
164624562	Amborella_trichopoda	EST	Vector
164624599	Amborella_trichopoda	EST	Vector
164624635	Amborella_trichopoda	EST	Vector
164624640	Amborella_trichopoda	EST	Vector
164624712	Amborella_trichopoda	EST	Vector
164624725	Amborella_trichopoda	EST	Vector
164624524	Amborella_trichopoda	EST	Vector
164624941	Amborella_trichopoda	EST	Vector
164624962	Amborella_trichopoda	EST	Vector
164625018	Amborella_trichopoda	EST	Vector
164625063	Amborella_trichopoda	EST	Vector
164625193	Amborella_trichopoda	EST	Vector
164625357	Amborella_trichopoda	EST	Vector
164625385	Amborella_trichopoda	EST	Vector
164625460	Amborella_trichopoda	EST	Vector
164625470	Amborella_trichopoda	EST	Vector
164625603	Amborella_trichopoda	EST	Vector
164625605	Amborella_trichopoda	EST	Vector
164625753	Amborella_trichopoda	EST	Vector
164625768	Amborella_trichopoda	EST	Vector
164625823	Amborella_trichopoda	EST	Vector
164625831	Amborella_trichopoda	EST	Vector
164625852	Amborella_trichopoda	EST	Vector
164626166	Amborella_trichopoda	EST	Vector
164626040	Amborella_trichopoda	EST	Vector
164626766	Amborella_trichopoda	EST	Vector
164626990	Amborella_trichopoda	EST	Vector
164627063	Amborella_trichopoda	EST	Vector
164626419	Amborella_trichopoda	EST	Vector
164626423	Amborella_trichopoda	EST	Vector
164626683	Amborella_trichopoda	EST	Vector
164626274	Amborella_trichopoda	EST	Vector

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EST Assemblies (PUTs)

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Vector Contamination List

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