Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
328999940Alnus_glutinosaESTVector
329014387Alnus_glutinosaESTVector
328999303Alnus_glutinosaESTVector
328999346Alnus_glutinosaESTVector
329001580Alnus_glutinosaESTVector
329001925Alnus_glutinosaESTVector
329002231Alnus_glutinosaESTVector
329005871Alnus_glutinosaESTVector
329009009Alnus_glutinosaESTVector
329007574Alnus_glutinosaESTVector
329008055Alnus_glutinosaESTVector
329010878Alnus_glutinosaESTVector
329006352Alnus_glutinosaESTVector
329006636Alnus_glutinosaESTVector
329009426Alnus_glutinosaESTVector
329010178Alnus_glutinosaESTVector
329010300Alnus_glutinosaESTVector
329010328Alnus_glutinosaESTVector
329012864Alnus_glutinosaESTVector
329016336Alnus_glutinosaESTVector
329016613Alnus_glutinosaESTVector
329016669Alnus_glutinosaESTVector
329016832Alnus_glutinosaESTVector
329017025Alnus_glutinosaESTVector
329023781Alnus_glutinosaESTVector
329018401Alnus_glutinosaESTVector
329018413Alnus_glutinosaESTVector
329019117Alnus_glutinosaESTVector
329019178Alnus_glutinosaESTVector
329019434Alnus_glutinosaESTVector
329019912Alnus_glutinosaESTVector
329020796Alnus_glutinosaESTVector
329020806Alnus_glutinosaESTVector
329020818Alnus_glutinosaESTVector
329020920Alnus_glutinosaESTVector
329020977Alnus_glutinosaESTVector
329017235Alnus_glutinosaESTVector
329017289Alnus_glutinosaESTVector
329017299Alnus_glutinosaESTVector
329017307Alnus_glutinosaESTVector
329017325Alnus_glutinosaESTVector
329017326Alnus_glutinosaESTVector
329017330Alnus_glutinosaESTVector
329017338Alnus_glutinosaESTVector
329017355Alnus_glutinosaESTVector
329017359Alnus_glutinosaESTVector
329017364Alnus_glutinosaESTVector
329017372Alnus_glutinosaESTVector
329017404Alnus_glutinosaESTVector
329017410Alnus_glutinosaESTVector

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