Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
82766708Agrostis_stoloniferaESTVector
82766717Agrostis_stoloniferaESTVector
82766736Agrostis_stoloniferaESTVector
82766753Agrostis_stoloniferaESTVector
82766755Agrostis_stoloniferaESTVector
82766789Agrostis_stoloniferaESTVector
82766795Agrostis_stoloniferaESTVector
82766886Agrostis_stoloniferaESTVector
82766923Agrostis_stoloniferaESTVector
82766933Agrostis_stoloniferaESTVector
82766934Agrostis_stoloniferaESTVector
82766968Agrostis_stoloniferaESTVector
82766989Agrostis_stoloniferaESTVector
82766994Agrostis_stoloniferaESTVector
82766997Agrostis_stoloniferaESTVector
82767028Agrostis_stoloniferaESTVector
82767072Agrostis_stoloniferaESTVector
82767106Agrostis_stoloniferaESTVector
82767124Agrostis_stoloniferaESTVector
82767125Agrostis_stoloniferaESTVector
82767161Agrostis_stoloniferaESTVector
82767169Agrostis_stoloniferaESTVector
82767174Agrostis_stoloniferaESTVector
82767182Agrostis_stoloniferaESTVector
82767186Agrostis_stoloniferaESTVector
82767199Agrostis_stoloniferaESTVector
82767212Agrostis_stoloniferaESTVector
82767220Agrostis_stoloniferaESTVector
82767249Agrostis_stoloniferaESTVector
82767273Agrostis_stoloniferaESTVector
82767289Agrostis_stoloniferaESTVector
82767307Agrostis_stoloniferaESTVector
82767327Agrostis_stoloniferaESTVector
82767346Agrostis_stoloniferaESTVector
82767354Agrostis_stoloniferaESTVector
82767364Agrostis_stoloniferaESTVector
82767380Agrostis_stoloniferaESTVector
82767388Agrostis_stoloniferaESTVector
82767397Agrostis_stoloniferaESTVector
82767449Agrostis_stoloniferaESTVector
82767534Agrostis_stoloniferaESTVector
82767540Agrostis_stoloniferaESTVector
82767549Agrostis_stoloniferaESTVector
82767572Agrostis_stoloniferaESTVector
82767573Agrostis_stoloniferaESTVector
82767584Agrostis_stoloniferaESTVector
82767590Agrostis_stoloniferaESTVector
82767592Agrostis_stoloniferaESTVector
82767593Agrostis_stoloniferaESTVector
82767622Agrostis_stoloniferaESTVector
82767632Agrostis_stoloniferaESTVector
82767638Agrostis_stoloniferaESTVector
82767647Agrostis_stoloniferaESTVector
82767651Agrostis_stoloniferaESTVector
82767652Agrostis_stoloniferaESTVector
82767654Agrostis_stoloniferaESTVector
82767667Agrostis_stoloniferaESTVector
82767672Agrostis_stoloniferaESTVector
82767678Agrostis_stoloniferaESTVector
82767691Agrostis_stoloniferaESTVector
82767705Agrostis_stoloniferaESTVector
82767711Agrostis_stoloniferaESTVector
82767714Agrostis_stoloniferaESTVector
82767768Agrostis_stoloniferaESTVector
82767841Agrostis_stoloniferaESTVector
82767843Agrostis_stoloniferaESTVector
82767846Agrostis_stoloniferaESTVector
82767855Agrostis_stoloniferaESTVector
82767879Agrostis_stoloniferaESTVector
82767888Agrostis_stoloniferaESTVector
82767889Agrostis_stoloniferaESTVector
82767897Agrostis_stoloniferaESTVector
82767904Agrostis_stoloniferaESTVector
82767911Agrostis_stoloniferaESTVector
82767941Agrostis_stoloniferaESTVector
82767949Agrostis_stoloniferaESTVector
82767954Agrostis_stoloniferaESTVector
82767972Agrostis_stoloniferaESTVector
82767987Agrostis_stoloniferaESTVector
82767992Agrostis_stoloniferaESTVector
82767993Agrostis_stoloniferaESTVector
82768001Agrostis_stoloniferaESTVector
82768009Agrostis_stoloniferaESTVector
82768029Agrostis_stoloniferaESTVector
82768055Agrostis_stoloniferaESTVector
82768073Agrostis_stoloniferaESTVector
82768085Agrostis_stoloniferaESTVector
82768095Agrostis_stoloniferaESTVector
82768120Agrostis_stoloniferaESTVector
82768133Agrostis_stoloniferaESTVector
82768137Agrostis_stoloniferaESTVector
82768143Agrostis_stoloniferaESTVector
82768150Agrostis_stoloniferaESTVector
82768167Agrostis_stoloniferaESTVector
82768181Agrostis_stoloniferaESTVector
82768209Agrostis_stoloniferaESTVector
82768225Agrostis_stoloniferaESTVector
82768228Agrostis_stoloniferaESTVector
82768230Agrostis_stoloniferaESTVector
82768236Agrostis_stoloniferaESTVector

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