Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
281502064Agastache_rugosaESTVector
281502099Agastache_rugosaESTVector
281502118Agastache_rugosaESTVector
281502135Agastache_rugosaESTVector
281502138Agastache_rugosaESTVector
281502144Agastache_rugosaESTVector
281502201Agastache_rugosaESTVector
281502204Agastache_rugosaESTVector

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