Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 219838088 | Adiantum_capillus_veneris | EST | Vector |
| 219838114 | Adiantum_capillus_veneris | EST | Vector |
| 219837298 | Adiantum_capillus_veneris | EST | Vector |
| 219838141 | Adiantum_capillus_veneris | EST | Vector |
| 219835516 | Adiantum_capillus_veneris | EST | Vector |
| 219835637 | Adiantum_capillus_veneris | EST | Vector |
| 219836295 | Adiantum_capillus_veneris | EST | Vector |
| 219837134 | Adiantum_capillus_veneris | EST | Vector |
| 219837155 | Adiantum_capillus_veneris | EST | Vector |
| 219837159 | Adiantum_capillus_veneris | EST | Vector |
| 219837178 | Adiantum_capillus_veneris | EST | Vector |
| 219837184 | Adiantum_capillus_veneris | EST | Vector |
| 219837263 | Adiantum_capillus_veneris | EST | Vector |
| 219837942 | Adiantum_capillus_veneris | EST | Vector |
| 219838039 | Adiantum_capillus_veneris | EST | Vector |
| 219838643 | Adiantum_capillus_veneris | EST | Vector |
| 219835760 | Adiantum_capillus_veneris | EST | Vector |
| 219835764 | Adiantum_capillus_veneris | EST | Vector |
| 219839091 | Adiantum_capillus_veneris | EST | Vector |
| 219839105 | Adiantum_capillus_veneris | EST | Vector |
| 219835384 | Adiantum_capillus_veneris | EST | Vector |
| 219835349 | Adiantum_capillus_veneris | EST | Vector |
| 219838336 | Adiantum_capillus_veneris | EST | Vector |
| 219835422 | Adiantum_capillus_veneris | EST | Vector |
| 219835469 | Adiantum_capillus_veneris | EST | Vector |
| 219835498 | Adiantum_capillus_veneris | EST | Vector |
| 219835538 | Adiantum_capillus_veneris | EST | Vector |
| 219835585 | Adiantum_capillus_veneris | EST | Vector |
| 219835615 | Adiantum_capillus_veneris | EST | Vector |
| 219836208 | Adiantum_capillus_veneris | EST | Vector |
| 219836231 | Adiantum_capillus_veneris | EST | Vector |
| 219839134 | Adiantum_capillus_veneris | EST | Vector |
| 219839606 | Adiantum_capillus_veneris | EST | Vector |
| 219839617 | Adiantum_capillus_veneris | EST | Vector |
| 219839716 | Adiantum_capillus_veneris | EST | Vector |
| 219839735 | Adiantum_capillus_veneris | EST | Vector |
| 219840287 | Adiantum_capillus_veneris | EST | Vector |
| 219840341 | Adiantum_capillus_veneris | EST | Vector |
| 219840342 | Adiantum_capillus_veneris | EST | Vector |
| 219840385 | Adiantum_capillus_veneris | EST | Vector |
| 219840422 | Adiantum_capillus_veneris | EST | Vector |
| 219840437 | Adiantum_capillus_veneris | EST | Vector |
| 219840442 | Adiantum_capillus_veneris | EST | Vector |
| 219840469 | Adiantum_capillus_veneris | EST | Vector |
| 219840470 | Adiantum_capillus_veneris | EST | Vector |
| 219840711 | Adiantum_capillus_veneris | EST | Vector |
| 219840746 | Adiantum_capillus_veneris | EST | Vector |
| 219840747 | Adiantum_capillus_veneris | EST | Vector |
| 219840756 | Adiantum_capillus_veneris | EST | Vector |
| 219840778 | Adiantum_capillus_veneris | EST | Vector |
| 219840782 | Adiantum_capillus_veneris | EST | Vector |
| 219841227 | Adiantum_capillus_veneris | EST | Vector |
| 219836234 | Adiantum_capillus_veneris | EST | Vector |
| 219836264 | Adiantum_capillus_veneris | EST | Vector |
| 219836914 | Adiantum_capillus_veneris | EST | Vector |
| 219836994 | Adiantum_capillus_veneris | EST | Vector |
| 219837025 | Adiantum_capillus_veneris | EST | Vector |
| 219837056 | Adiantum_capillus_veneris | EST | Vector |
| 219837075 | Adiantum_capillus_veneris | EST | Vector |
| 219837750 | Adiantum_capillus_veneris | EST | Vector |
| 219837784 | Adiantum_capillus_veneris | EST | Vector |
| 219837798 | Adiantum_capillus_veneris | EST | Vector |
| 219835162 | Adiantum_capillus_veneris | EST | Vector |
| 219835184 | Adiantum_capillus_veneris | EST | Vector |
| 219835210 | Adiantum_capillus_veneris | EST | Vector |
| 219835219 | Adiantum_capillus_veneris | EST | Vector |
| 219835236 | Adiantum_capillus_veneris | EST | Vector |
| 219835272 | Adiantum_capillus_veneris | EST | Vector |
| 219835274 | Adiantum_capillus_veneris | EST | Vector |
| 219835288 | Adiantum_capillus_veneris | EST | Vector |
| 219835290 | Adiantum_capillus_veneris | EST | Vector |
| 219835300 | Adiantum_capillus_veneris | EST | Vector |
| 219836074 | Adiantum_capillus_veneris | EST | Vector |
| 219836099 | Adiantum_capillus_veneris | EST | Vector |
| 219836147 | Adiantum_capillus_veneris | EST | Vector |
| 219836166 | Adiantum_capillus_veneris | EST | Vector |
| 219836660 | Adiantum_capillus_veneris | EST | Vector |
| 219836793 | Adiantum_capillus_veneris | EST | Vector |
| 219838864 | Adiantum_capillus_veneris | EST | Vector |
| 219838866 | Adiantum_capillus_veneris | EST | Vector |
| 219838873 | Adiantum_capillus_veneris | EST | Vector |
| 219838903 | Adiantum_capillus_veneris | EST | Vector |
| 219838989 | Adiantum_capillus_veneris | EST | Vector |
| 219839889 | Adiantum_capillus_veneris | EST | Vector |
| 219839917 | Adiantum_capillus_veneris | EST | Vector |
| 219839945 | Adiantum_capillus_veneris | EST | Vector |
| 219840294 | Adiantum_capillus_veneris | EST | Vector |
| 219840303 | Adiantum_capillus_veneris | EST | Vector |
| 219840820 | Adiantum_capillus_veneris | EST | Vector |
| 219840898 | Adiantum_capillus_veneris | EST | Vector |
| 219840900 | Adiantum_capillus_veneris | EST | Vector |
| 219841052 | Adiantum_capillus_veneris | EST | Vector |
| 219841058 | Adiantum_capillus_veneris | EST | Vector |
| 219841088 | Adiantum_capillus_veneris | EST | Vector |
| 219841340 | Adiantum_capillus_veneris | EST | Vector |
| 219841397 | Adiantum_capillus_veneris | EST | Vector |
| 219841446 | Adiantum_capillus_veneris | EST | Vector |
| 219841551 | Adiantum_capillus_veneris | EST | Vector |
| 219841652 | Adiantum_capillus_veneris | EST | Vector |
| 219841653 | Adiantum_capillus_veneris | EST | Vector |