Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
67218027Adiantum_capillus_venerisESTBacteria
67219169Adiantum_capillus_venerisESTBacteria
67219264Adiantum_capillus_venerisESTBacteria
67221228Adiantum_capillus_venerisESTBacteria
67222437Adiantum_capillus_venerisESTBacteria
67223722Adiantum_capillus_venerisESTBacteria
67229604Adiantum_capillus_venerisESTBacteria
67235624Adiantum_capillus_venerisESTBacteria
219824355Adiantum_capillus_venerisESTBacteria
219823710Adiantum_capillus_venerisESTBacteria
219822975Adiantum_capillus_venerisESTBacteria
219835980Adiantum_capillus_venerisESTBacteria
219837545Adiantum_capillus_venerisESTBacteria
219837738Adiantum_capillus_venerisESTBacteria
219830756Adiantum_capillus_venerisESTBacteria
219826880Adiantum_capillus_venerisESTBacteria

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