Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
195219793Actinidia_erianthaESTVector
195294222Actinidia_erianthaESTVector
195224652Actinidia_erianthaESTVector
195225388Actinidia_erianthaESTVector
195234126Actinidia_erianthaESTVector
195234129Actinidia_erianthaESTVector
195235118Actinidia_erianthaESTVector
195235603Actinidia_erianthaESTVector
195236585Actinidia_erianthaESTVector
195275045Actinidia_erianthaESTVector
195276036Actinidia_erianthaESTVector
195256985Actinidia_erianthaESTVector
195257557Actinidia_erianthaESTVector
195308513Actinidia_erianthaESTVector
195262213Actinidia_erianthaESTVector
195311277Actinidia_erianthaESTVector
195311281Actinidia_erianthaESTVector
195214079Actinidia_erianthaESTVector
195285478Actinidia_erianthaESTVector
195319893Actinidia_erianthaESTVector
195212938Actinidia_erianthaESTVector
195212939Actinidia_erianthaESTVector
195284825Actinidia_erianthaESTVector
195285489Actinidia_erianthaESTVector
195265659Actinidia_erianthaESTVector
195285337Actinidia_erianthaESTVector
195293515Actinidia_erianthaESTVector
195294705Actinidia_erianthaESTVector
195264427Actinidia_erianthaESTVector
195295299Actinidia_erianthaESTVector
195296490Actinidia_erianthaESTVector
195293180Actinidia_erianthaESTVector
195294371Actinidia_erianthaESTVector
195295557Actinidia_erianthaESTVector
195197358Actinidia_erianthaESTVector
195311173Actinidia_erianthaESTVector
195237668Actinidia_erianthaESTVector
195311936Actinidia_erianthaESTVector
195284238Actinidia_erianthaESTVector
195223280Actinidia_erianthaESTVector
195250172Actinidia_erianthaESTVector
195212048Actinidia_erianthaESTVector
195283659Actinidia_erianthaESTVector
195260276Actinidia_erianthaESTVector
195233974Actinidia_erianthaESTVector
195263316Actinidia_erianthaESTVector
195314877Actinidia_erianthaESTVector
195220027Actinidia_erianthaESTVector
195226318Actinidia_erianthaESTVector
195256259Actinidia_erianthaESTVector
195283127Actinidia_erianthaESTVector

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