Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
195322223Actinidia_deliciosaESTVector
195265907Actinidia_deliciosaESTVector
195221675Actinidia_deliciosaESTVector
195256881Actinidia_deliciosaESTVector
195323448Actinidia_deliciosaESTVector
195200879Actinidia_deliciosaESTVector
195300754Actinidia_deliciosaESTVector
195279542Actinidia_deliciosaESTVector
195205765Actinidia_deliciosaESTVector
195204363Actinidia_deliciosaESTVector
195255011Actinidia_deliciosaESTVector
195294169Actinidia_deliciosaESTVector
195303212Actinidia_deliciosaESTVector
195244713Actinidia_deliciosaESTVector
195325028Actinidia_deliciosaESTVector
195295366Actinidia_deliciosaESTVector
195277773Actinidia_deliciosaESTVector
195281147Actinidia_deliciosaESTVector
195310997Actinidia_deliciosaESTVector
195324037Actinidia_deliciosaESTVector
195218378Actinidia_deliciosaESTVector
195287403Actinidia_deliciosaESTVector
195310707Actinidia_deliciosaESTVector
195259216Actinidia_deliciosaESTVector
195292244Actinidia_deliciosaESTVector
195260039Actinidia_deliciosaESTVector
195213667Actinidia_deliciosaESTVector
195194668Actinidia_deliciosaESTVector
195195205Actinidia_deliciosaESTVector
195297843Actinidia_deliciosaESTVector
195230143Actinidia_deliciosaESTVector
195307738Actinidia_deliciosaESTVector
195215617Actinidia_deliciosaESTVector
195200051Actinidia_deliciosaESTVector
195274361Actinidia_deliciosaESTVector
195212119Actinidia_deliciosaESTVector
195243715Actinidia_deliciosaESTVector
195271774Actinidia_deliciosaESTVector
195272284Actinidia_deliciosaESTVector
195317543Actinidia_deliciosaESTVector
195212926Actinidia_deliciosaESTVector
195294796Actinidia_deliciosaESTVector
195250067Actinidia_deliciosaESTVector
195211761Actinidia_deliciosaESTVector
195259508Actinidia_deliciosaESTVector
195268958Actinidia_deliciosaESTVector
195239233Actinidia_deliciosaESTVector
195311863Actinidia_deliciosaESTVector
195316459Actinidia_deliciosaESTVector
195310797Actinidia_deliciosaESTVector
195262522Actinidia_deliciosaESTVector
195262575Actinidia_deliciosaESTVector
195314798Actinidia_deliciosaESTVector
195223322Actinidia_deliciosaESTVector
195266254Actinidia_deliciosaESTVector
195278697Actinidia_deliciosaESTVector
195291457Actinidia_deliciosaESTVector
195201387Actinidia_deliciosaESTVector
195216144Actinidia_deliciosaESTVector
195242541Actinidia_deliciosaESTVector
195262107Actinidia_deliciosaESTVector
195309831Actinidia_deliciosaESTVector
195251344Actinidia_deliciosaESTVector
195268075Actinidia_deliciosaESTVector
195322110Actinidia_deliciosaESTVector
195294524Actinidia_deliciosaESTVector
195298142Actinidia_deliciosaESTVector
195320148Actinidia_deliciosaESTVector
195252835Actinidia_deliciosaESTVector
195279960Actinidia_deliciosaESTVector
195197833Actinidia_deliciosaESTVector
195207547Actinidia_deliciosaESTVector
195230856Actinidia_deliciosaESTVector
195263372Actinidia_deliciosaESTVector
195302007Actinidia_deliciosaESTVector
195257069Actinidia_deliciosaESTVector

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