Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
302090223Actaea_racemosaESTBacteria
302091392Actaea_racemosaESTBacteria
302091576Actaea_racemosaESTBacteria
302091588Actaea_racemosaESTBacteria
302091638Actaea_racemosaESTBacteria
302091831Actaea_racemosaESTBacteria
302091832Actaea_racemosaESTBacteria
302091869Actaea_racemosaESTBacteria
302102431Actaea_racemosaESTBacteria
302102666Actaea_racemosaESTBacteria

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