Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
51361603Acorus_americanusESTVector
51360250Acorus_americanusESTVector
52845456Acorus_americanusESTVector
52845486Acorus_americanusESTVector
52846006Acorus_americanusESTVector
52847521Acorus_americanusESTVector
52847766Acorus_americanusESTVector
74062168Acorus_americanusESTVector
74067405Acorus_americanusESTVector
74073596Acorus_americanusESTVector
74102570Acorus_americanusESTVector
74103022Acorus_americanusESTVector
74107722Acorus_americanusESTVector
42635547Acorus_americanusESTVector
42636547Acorus_americanusESTVector
42651822Acorus_americanusESTVector
51354748Acorus_americanusESTVector
51356507Acorus_americanusESTVector
51357465Acorus_americanusESTVector
51359214Acorus_americanusESTVector

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