Vector Contamination List
At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)
| Sequence ID | Organism | Sequence Type | Contamination Type |
|---|---|---|---|
| 33526508 | Acetabularia_acetabulum | EST | Vector |
| 106775684 | Acetabularia_acetabulum | EST | Vector |
| 106775695 | Acetabularia_acetabulum | EST | Vector |
| 106775697 | Acetabularia_acetabulum | EST | Vector |
| 106775698 | Acetabularia_acetabulum | EST | Vector |
| 106775699 | Acetabularia_acetabulum | EST | Vector |
| 106775700 | Acetabularia_acetabulum | EST | Vector |
| 106775703 | Acetabularia_acetabulum | EST | Vector |
| 106775704 | Acetabularia_acetabulum | EST | Vector |
| 106775705 | Acetabularia_acetabulum | EST | Vector |
| 106775706 | Acetabularia_acetabulum | EST | Vector |
| 106775707 | Acetabularia_acetabulum | EST | Vector |
| 106775709 | Acetabularia_acetabulum | EST | Vector |
| 106775710 | Acetabularia_acetabulum | EST | Vector |
| 106775711 | Acetabularia_acetabulum | EST | Vector |
| 106775712 | Acetabularia_acetabulum | EST | Vector |
| 106775713 | Acetabularia_acetabulum | EST | Vector |
| 106775714 | Acetabularia_acetabulum | EST | Vector |
| 106775715 | Acetabularia_acetabulum | EST | Vector |
| 106775716 | Acetabularia_acetabulum | EST | Vector |
| 106775717 | Acetabularia_acetabulum | EST | Vector |
| 106775718 | Acetabularia_acetabulum | EST | Vector |
| 106775719 | Acetabularia_acetabulum | EST | Vector |
| 106775720 | Acetabularia_acetabulum | EST | Vector |
| 106775722 | Acetabularia_acetabulum | EST | Vector |
| 106775723 | Acetabularia_acetabulum | EST | Vector |
| 106775725 | Acetabularia_acetabulum | EST | Vector |
| 106775726 | Acetabularia_acetabulum | EST | Vector |
| 106775728 | Acetabularia_acetabulum | EST | Vector |
| 106775729 | Acetabularia_acetabulum | EST | Vector |
| 106775730 | Acetabularia_acetabulum | EST | Vector |
| 106775731 | Acetabularia_acetabulum | EST | Vector |
| 106775732 | Acetabularia_acetabulum | EST | Vector |
| 106775733 | Acetabularia_acetabulum | EST | Vector |
| 106775734 | Acetabularia_acetabulum | EST | Vector |
| 106775736 | Acetabularia_acetabulum | EST | Vector |
| 106775737 | Acetabularia_acetabulum | EST | Vector |
| 106775738 | Acetabularia_acetabulum | EST | Vector |
| 106775739 | Acetabularia_acetabulum | EST | Vector |
| 106775740 | Acetabularia_acetabulum | EST | Vector |
| 106775741 | Acetabularia_acetabulum | EST | Vector |
| 106775742 | Acetabularia_acetabulum | EST | Vector |
| 106775744 | Acetabularia_acetabulum | EST | Vector |
| 106775745 | Acetabularia_acetabulum | EST | Vector |
| 106775747 | Acetabularia_acetabulum | EST | Vector |
| 106775749 | Acetabularia_acetabulum | EST | Vector |
| 106775750 | Acetabularia_acetabulum | EST | Vector |
| 106775751 | Acetabularia_acetabulum | EST | Vector |
| 106775753 | Acetabularia_acetabulum | EST | Vector |
| 106775760 | Acetabularia_acetabulum | EST | Vector |
| 106775761 | Acetabularia_acetabulum | EST | Vector |
| 106775763 | Acetabularia_acetabulum | EST | Vector |
| 106775766 | Acetabularia_acetabulum | EST | Vector |
| 106775769 | Acetabularia_acetabulum | EST | Vector |
| 106775770 | Acetabularia_acetabulum | EST | Vector |
| 106775775 | Acetabularia_acetabulum | EST | Vector |
| 106775776 | Acetabularia_acetabulum | EST | Vector |
| 106775777 | Acetabularia_acetabulum | EST | Vector |
| 106775779 | Acetabularia_acetabulum | EST | Vector |
| 106775786 | Acetabularia_acetabulum | EST | Vector |
| 106775811 | Acetabularia_acetabulum | EST | Vector |
| 106775823 | Acetabularia_acetabulum | EST | Vector |
| 106775885 | Acetabularia_acetabulum | EST | Vector |
| 106775909 | Acetabularia_acetabulum | EST | Vector |
| 106775976 | Acetabularia_acetabulum | EST | Vector |
| 106776039 | Acetabularia_acetabulum | EST | Vector |
| 106776049 | Acetabularia_acetabulum | EST | Vector |
| 106776081 | Acetabularia_acetabulum | EST | Vector |
| 106776095 | Acetabularia_acetabulum | EST | Vector |
| 106776118 | Acetabularia_acetabulum | EST | Vector |
| 106776208 | Acetabularia_acetabulum | EST | Vector |
| 106776342 | Acetabularia_acetabulum | EST | Vector |
| 106777181 | Acetabularia_acetabulum | EST | Vector |
| 106777235 | Acetabularia_acetabulum | EST | Vector |
| 106777908 | Acetabularia_acetabulum | EST | Vector |
| 106777968 | Acetabularia_acetabulum | EST | Vector |
| 106778021 | Acetabularia_acetabulum | EST | Vector |
| 106778091 | Acetabularia_acetabulum | EST | Vector |
| 106778156 | Acetabularia_acetabulum | EST | Vector |
| 106779038 | Acetabularia_acetabulum | EST | Vector |