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At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -d -p -l 50 -exdrop 1 -identity 90) to screen EST sequences against UniVec for vector contaminations . The table below summarizes the total count of "contamination". Clicking on the count will browse the individual contaminated sequence.



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Organism Contamination_Type Sequence Count
Acacia_mangiumVector4
Acanthus_ebracteatusVector3
Acetabularia_acetabulumVector80
Acorus_americanusVector20
Aegiceras_corniculatumVector1
Aegilops_speltoidesVector6
Aegilops_tauschiiVector1
Agrostis_capillarisVector701
Agrostis_stoloniferaVector622
Agrostis_stolonifera_var__palustrisVector17
Allium_cepaVector49
Allium_sativumVector2
Alstroemeria_peruvianaVector4
Amborella_trichopodaVector178
Ambrosia_trifidaVector1
Ammopiptanthus_mongolicusVector3
Ananas_comosusVector1
Andrographis_paniculataVector1
Antirrhinum_majusVector358
Apium_graveolens_var__dulceVector1