DS LOGO

I.S07.3419 (Ds Insertion Line)    View RefGen_v1 Placement     Admin

Jump to Record:



diagram of ds insertion

Predicted Ds insertion site / closest B73 gene for I.S07.3419       Order Seed    View all Ds Insertions

Alt
Loc
Predicted Ds insertion site   Closest Maize Gene
GDB Ds Distance from Gene All Ds
near
gene
Flanking sequence (fDs)
Quality
Score
Seq
Pos
1 3: 143,802,072 GRMZM2G164502_T01
[View Locus Details]
-1.1 kb from 5` end gi|226938724 (I.S07.3419_JSR03) HQ 5a
1 3: 143,802,082 GRMZM2G164502_T01
[View Locus Details]
-1.1 kb from 5` end gi|226938875 (I.S07.3419_JSR05) MQ3 3a

Placement Details

More on Insertion Site...


This seedstock is available from the Maize Genetics Coop as AcDs-00332

To request seed of I.S07.3419 (AcDs-00332), you can add it to a Maize Coop Stock Center order -- this action takes you to the maizegdb.org website. Then complete the order on maizegdb, or use the "back" button to return to PlantGDB and additional searches. Please note that genomic location reported here is subject to error, so we advise you do careful research before placing your order (see below).

Before You Order...


Flanking genomic DNA sequence

W22 flanking DNA sequence(s) (fDs) listed under Putative Location in B73 Genome (RefGen_v1) were derived from 5' or 3' end of Ds-containing fragment, using primers either adjacent (5a, 3a) or distal (5d, 3d) to the insertion site. Directionality is as shown in the diagram. For more information see AcDs Help. See below for FASTA sequence and BLAST links:

5' Adjacent fDs: 226938724 (I.S07.3419_JSR03) Blast@ZmGDB

Show FASTA Sequence for gi|226938724 (225 bp)

>gi|226938724|gb|FI849713|I.S07.3419
CCTGTGATGGCGACCCTGAGCCGGCCCTGGCGTCGTCGTCGTCCTTGGCTGATTGGGCGATGGAAGGCGGTGATCCCTGCCTACCTTCACCCTGGTCCTG
GGTCAAGTGCAATTCAGAAGCGCAACCAAGAGTAGTTTCCATGTACAGCTAATTCCTATTAATTCATCTCTGAGGAGCTAATAAGCCACGCACTGACCTA
GCTTGGTGGTTGTTCGAATCTGCAG

3' Adjacent fDs: 226938875 (I.S07.3419_JSR05) Blast@ZmGDB

Show FASTA Sequence for gi|226938875 (1023 bp)

>gi|226938875|gb|FI849844|I.S07.3419
ATCACAGAGTCCATCCGGTGAAGCCGAGTTCCATGGTGCATGGTACTTGTATATCTCCAAGGCGTTGAGAATTGGCCCCTTGGACGAATCGTTGGTCTTC
CTCAGCGCCAAGGACAGGACGAAAGGCAGCGAGATGTTGGGGAAGCCTGGCTCGTAGAGCCGGTACTTGCCCGGCGCGTTCTCGCCAATGTCCACCGTGG
GCTTGCTCACGTCCGCCAGCCCCGGGATGTAGAGCTTGAACTTGCGCGTCTCCGGGACCAAGAACTCCTCGATCTCCGCCAGGTACGAGAAGGCCCAGCC
GTTGCCCGGGAAGCCTGGGAGGTCGAGGCGATAGGTGAGCTCGCCCAGCGACCCGACCACCGCCGTCTGCATCACCTTCTGCGGGGGCCTCTCGCTGCCG
GCCACGAAGACGGGCCTGTCGGTGGAGACGTTGACGGTGCCGGCTGCCACGTCCACCAGGTAGTTGGCCCTCCTCACCATGTCCGACTCCCAGATCCTGT
CGTAGGGGTCGTCCGGGTACCTGACGGGGTCGGCGGTGGGCGCGCCGAAGTTGATCCTGGCGGAGAGGGCCAGGAAGGCGTCCGCCTCGTAGTCGGTGTA
GTAGAGGGAGCCGTTCAGCTGCCGGAGCTCCAGCGTGGAGATGAAGGGCGTCCCCGTCCCCGTCCCCGTGGACGACAGGCAGACGCTGAGGGCGGGGTCG
GCGGCGAGGACGACGGCCTCCCTGGTGACCACCTTGGAGTCGTCGTAGATGACGATGGTGGACCAGTGGGAGGCGCCAAGGTAGAGATCGAACTCCGGGA
ACACGTTGCTGCTGTCGAAGTTGCCGTACAGGAAGGTGGCGCGGACGAGGTAGCGGGTGCGGGTGCGGACGTGCAGCGTGTAGCAGTGCTTGCTGCTGCT
GCTGCTGGCGGACGGTGATGGGAAGTAGCGCAGCGTGGAGTACTGCGCGCGCTTCTCGGAGGGCACGGAGATGGTGGCCGTCTGGCCGAAGGGGAACCAG
CCGGCGTCGCCCGTCCACTGCAG



Genetics

Line was produced using a1 as a donor.
Ds element donor under selection for unlinked transpositions.
Identified as Southern band of 3.4 kb.
Southern Notes:


Inverse PCR

Genomic DNA digestion performed using the restriction enzyme PstI.
Predicted to produce a 2.5 kb band using primers LC24 LC18.
IPCR Notes:


Sequencing

IPCR product was processed by ethanol precipitation.
Sequencing reaction was performed using primers JSR05 and JSR03.
Sequencing Notes:

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!