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I.S07.3139 (Ds Insertion Line)    View RefGen_v1 Placement     Admin

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diagram of ds insertion

Predicted Ds insertion site / closest B73 gene for I.S07.3139       Order Seed    View all Ds Insertions

Alt
Loc
Predicted Ds insertion site   Closest Maize Gene
GDB Ds Distance from Gene All Ds
near
gene
Flanking sequence (fDs)
Quality
Score
Seq
Pos
1 7: 166,163,213 GRMZM2G079669_T01
[View Locus Details]
0.7 kb from 5` end gi|226938701 (I.S07.3139_JSR03) HQ 5a
1 7: 166,162,937 GRMZM2G079669_T01
[View Locus Details]
1 kb from 5` end gi|226938857 (I.S07.3139_JSR05) HQ 3a

Placement Details

More on Insertion Site...


Redundancy Group: RS.0162

More on redundancy...

This seedstock is available from the Ac/Ds Project

To order seed, use the online order form . You will need a purchase order from your institution to complete the order. When ordering seed, use the 9-11 digit barcode as the unique identifier ( I.S07.3139). Please note that genomic location reported here is subject to error, so we advise you do careful research before placing your order.

Before You Order...


Flanking genomic DNA sequence

W22 flanking DNA sequence(s) (fDs) listed under Putative Location in B73 Genome (RefGen_v1) were derived from 5' or 3' end of Ds-containing fragment, using primers either adjacent (5a, 3a) or distal (5d, 3d) to the insertion site. Directionality is as shown in the diagram. For more information see AcDs Help. See below for FASTA sequence and BLAST links:

5' Adjacent fDs: 226938701 (I.S07.3139_JSR03) Blast@ZmGDB

Show FASTA Sequence for gi|226938701 (286 bp)

>gi|226938701|gb|FI849690|I.S07.3139
TACTTTTTTTTTTCTTGACGTGCCGAAAGGATCCAAAAAGCCAACCGCACGCTCCACTCGATCCAATCATACGGCGGTAGCAGCGCGCGACGGGCAGTTT
TCCACGCGCCCCTTCTTTGCTCGTCGCCTTTTCATGCACCGCAGCAGAGGTGCCAGCCCTGCCTGGCTGCTAGTGCTAGGGCAGGCAGCAGGGCAAAAGT
GTACTACGATATATTTTTATACATATACATAGAATTAAACCCGTATAGGATATGACGAACTGCTCGCTCCCCTGTGTCCTCTGCAG

3' Adjacent fDs: 226938857 (I.S07.3139_JSR05) Blast@ZmGDB

Show FASTA Sequence for gi|226938857 (196 bp)

>gi|226938857|gb|FI849826|I.S07.3139
CCCTGGACATCCGCATGACCCCATCTACTACGCATCGATAGCAGCGTGTGTAATGCAATGGGCTCACATGCAGCCATGCCATGTTAACCAGTAGGCCCAC
AGCACAGAGATCATTGCAGGTGTAAGTATAAGGCTGAGGACCCCCCAGAACTAATTGCAAGTAAAAAAAGCAGTTGTTGCCTCGCCGCGGCTGCAG



Genetics

Line was produced using a1 as a donor.
Ds element donor under selection for unlinked transpositions.
Identified as Southern band of 2.8 kb.
Southern Notes:


Inverse PCR

Genomic DNA digestion performed using the restriction enzyme PstI.
Predicted to produce a 1.8 kb band using primers LC24 LC18.
IPCR Notes:


Sequencing

IPCR product was processed by ethanol precipitation.
Sequencing reaction was performed using primers JSR05 and JSR03.
Sequencing Notes:

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