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B.S07.0207R (Ds Insertion Line)    View RefGen_v1 Placement     Admin

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diagram of ds insertion

Predicted Ds insertion site / closest B73 gene for B.S07.0207R       Order Seed    View all Ds Insertions

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Loc
Predicted Ds insertion site   Closest Maize Gene
GDB Ds Distance from Gene All Ds
near
gene
Flanking sequence (fDs)
Quality
Score
Seq
Pos
1 1: 298,749,724 GRMZM2G011923_T01
[View Locus Details]
8.1 kb from 5` end gi|177891268 (B.S07.0207R_JSR05) MQ4 3a
1 1: 298,743,513 GRMZM2G011923_T01
[View Locus Details]
1.9 kb from 5` end gi|177891269 (B.S07.0207R_JSR04_JSR05_dir) HQ 3d

Placement Details

More on Insertion Site...


This seedstock is available from the Maize Genetics Coop as AcDs-00540

To request seed of B.S07.0207R (AcDs-00540), you can add it to a Maize Coop Stock Center order -- this action takes you to the maizegdb.org website. Then complete the order on maizegdb, or use the "back" button to return to PlantGDB and additional searches. Please note that genomic location reported here is subject to error, so we advise you do careful research before placing your order (see below).

Before You Order...


Flanking genomic DNA sequence

W22 flanking DNA sequence(s) (fDs) listed under Putative Location in B73 Genome (RefGen_v1) were derived from 5' or 3' end of Ds-containing fragment, using primers either adjacent (5a, 3a) or distal (5d, 3d) to the insertion site. Directionality is as shown in the diagram. For more information see AcDs Help. See below for FASTA sequence and BLAST links:

3' Adjacent fDs: 177891268 (B.S07.0207R_JSR05) Blast@ZmGDB

Show FASTA Sequence for gi|177891268 (865 bp)

>gi|177891268|gb|ET671356|B.S07.0207R
CTCTAATCCTTCCTCATATAATAGTTATTCTTTACCATATTAATATTTATTGAGCTATTTAACTTGGTAACAATATGTATCATAACAATTTAAATTGTCT
ATGATTTTTTTAAAACTTTTAAAACTGGTGAATAAAATGTTAAATTACTGAATTATGGCATATAGGGCCATAGGGGGAGATATGATGAATGGTTGAAGAC
GTACTGTATGCGAGGGTAATATCTGGGTTCAGGGGATAAATGCGGGGGAATGATTAGAGATGACCTTAGTTTTCCTTATCGTAATCTATGGATTAGGCAC
ATCATCATTGTCTCGCAACCTTGTAAAAGTCGAAACACCACAGTGAATCGAACTCTGTTGGAGGATGAACCAACCTGTGGCGTTTGGGGATCCAAATTGT
TGTTGAATGAAAGCGTTCAATTTGGTCGGTGACCGGGAGATGTCTTTGCTGGATCTTAGGTGCCGTTTGGTTCATAAAATGTAACGTAAATAATAATGAT
AATGATTTACACTTGAATACCGGCGGTAACAAGTTTGAATAAGCCGATATCCATTTCTAGTATATTATCGATTATGGTTAGACTTAAACAAATATAATTT
AGCGTTATATGTTACCCATTACGTTACATTTTCGGGTGGAGTTCAAATGCTAAGATCTGACCGGGAGACCAAATACTGTCATGGATACTGCACTTTGTGG
AATGGATAGATCCTAGGAGACCCCGAACGAAGTAGCGCATCGGATTCCTCTCGTGCCCTTTGCATTGCAGCACGGCGCCGTGCAGTGACGAGTCACGCGT
GCGTTGCTGACCCCGCCCATGAAACAGAAATGAATCCAAGAACCCAATCGTTGAATTGAATTGAT

3' Distal fDs: 177891269 (B.S07.0207R_JSR04_JSR05_dir) Blast@ZmGDB

Show FASTA Sequence for gi|177891269 (370 bp)

>gi|177891269|gb|ET671357|B.S07.0207R
CGAGCACCTAAACCCTAACTTACCATCGGTATTCGGATCCGATCTAATCACAAGTGTATGTGCATGTATTGTGCCTTCTACTCGCTCCGATTGCTCTGCA
AAAATCATCGGGTGTACATGTCTACGCCCGTGCCCTTCACCGAGTCCAGCTCGGCCGGGGGATCTGTTCTCAAGATGCTAAAAGAGCGTCTTTTCCCCCC
CTATGATCCATCCATCCCCTTGTAGTATAAGCCTATAGGAATAGGATCTTGTCATCTCTTCACTGACCTCAGGCGTGTTAATCTCGGTTCTTTCTTTCTC
TTGCGACCGGGGTACCAGATCGACCGAGATATGGATCGGCCTGTGGCATCTGGGGGACCGAGCTCCGCGG



Genetics

Line was produced using r1 as a donor.
Ds element donor under selection for linked transpositions.
Identified as Southern band of 3.6 kb.
Southern Notes:


Inverse PCR

Genomic DNA digestion performed using the restriction enzyme SacII.
Predicted to produce a 2.6 kb band using primers LC24 LC18.
IPCR Notes:

Product was used in PCR again using primers JGp2 LC45, producing a 3 kb band.


Sequencing

IPCR product was processed by precipitation.
Sequencing reaction was performed using primers JSR05 and JSR04.
Sequencing Notes: Two reads

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