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• Search Options... PlantGDB Site Search Sequence ID Sequence Keyword

• at PlantGDB

Maize Annotation Projects    [Loci/Annotations Page]   Subscribe

Projects are informal gene categories intended as an aid to annotators.
This page lists projects assigned by PlantGDB staff to version 5b.60 loci and their yrGATE annotations in progress (submitted or approved). Click a number in columns 4 - 7 to view entries.
Please contact us if you have a list of genes/loci you'd like assigned to a Project (either new or existing).

Project Name	Description	Source	Total Loci*	Low Quality Loci*	Loci with annota- tions*	Annotations in CommunityCentral
						Total
chromatin related genes	loci identified by blastp 1e-5 homology to plant chromatin-related proteins in ChromDB (a preliminary list)	http://www.chromdb.org	385	17	8	10	4	3	1	0	0	2	0	0
classical maize genes	maize loci putatively associated with studied maize genes (locus table at MaizeGDB), based on blastp similarity	http://synteny.cnr.berkeley.edu/wiki/index.php/Classical_Maize_Genes	465	27	31	43	12	8	6	2	1	8	6	3
Ds insertions	Loci within 1 kb of a predicted Ds or Ac transposon insertion	http://www.plantgdb.org/prj/AcDsTagging/	1249	78	34	43	12	10	10	2	0	7	2	5
gene fusion	gene loci flagged by GAEVAL as requiring fusion of two or more published models	http://www.plantgdb.org/XGDB/phplib/GAEVAL.php?list=MWuca_Fus&GDB=Zm	1416	266	35	34	2	2	13	2	0	6	9	1
kinesin related genes	loci similar to GenBank viridiplantae kinesin proteins by blastp at 1e-5 (a preliminary list)	unpublished	145	7	7	15	6	1	1	1	1	4	1	0
named maize genes	Named genes (GenBank, UniProt) that were computationally assigned to MaizeSequence genes. Cross-referenced with curated list of loci at MaizeGDB	http://maizesequence.org/info/docs/namedgenes.html	589	26	31	21	10	6	2	0	0	2	1	0
splicing related genes	maize loci related by blastp similarity to Arabidopsis splicing-related genes (a preliminary list)	http://www.plantgdb.org/SRGD/	297	13	15	19	4	2	8	0	0	2	3	2
starch pathway genes	based on locus description includes starch or amylo, or blastp similarity to translations from starch gene list compiled by Alan Myers (preliminary dataset)	unpublished	34	2	5	9	2	1	4	2	0	0	0	0
genes with no project assignment	If you have a list of maize genes you would like assigned to a project, please contact use using our feedback form	N/A	35788	2250	22	31	7	1	12	2	0	4	5	4
TOTALS*	All loci / annotations	N/A	39393	2537	161	228	61	34	57	11	2	36	27	15

*NOTE that since a locus may be assigned to more than one project, the aggregate total for projects will be greater than the total for all loci/annotations.