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Maize Loci/Annotations  ?

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 Dataset:
 ? WGS   FGS  non-FGS
 Filters: Filters & Search are additive ("AND")
Annotation Project: ?
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yrGATE Status: ?
Coverage Score: ?
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Locus ID
(5a.59 models)
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Ds
Dist
(kb)
?
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project ? Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
GRMZM2G006673 1 2858784
2871425
12.6 20 f 2 390 filtered_set; syntelog; UniRef90: C5WMN6_SORBI Putative uncharacterized pro... splicing related genes 0.99 0.96
GRMZM2G176499 1 8103676
8106330
2.7 3 r 1 7 filtered_set; syntelog; UniRef90: B6TPQ8_MAIZE Heat shock protein binding p... splicing related genes 0.97 0.97
GRMZM2G000749 1 12099073
12107130
8.1 13 f 3 69 filtered_set; syntelog; UniRef90: C4IYF9_MAIZE Putative uncharacterized pro... splicing related genes 0.9 0.97
GRMZM2G000823 1 12146189
12150797
4.6 7 f 1 25 filtered_set; syntelog; UniRef90: B6SLS0_MAIZE ATP-dependent RNA helicase D... splicing related genes 1 0.76 1 Impredits DEAD Box RNA Helicase
GRMZM2G142557 1 15727314
15736121
8.8 7 f 1 652 filtered_set; syntelog; UniRef90: B6UA93_MAIZE RNA-binding post-transcripti... splicing related genes 1 1
GRMZM2G007486 1 22736088
22739715
3.6 12 f 2 353 filtered_set; syntelog; UniRef90: Q10QD1_ORYSJ Peptidylprolyl isomerase, pu... splicing related genes 0.99 0.94
GRMZM2G428391 1 41101054
41103817
2.8 1 f 2 379 filtered_set; syntelog; UniRef90: Q9LHA8_ARATH 70 kDa heat shock protein n=... splicing related genes 0.93 0.98
GRMZM2G145275 1 41217232
41221207
4 1 r 1 262 filtered_set; syntelog; UniRef90: C5WPF3_SORBI Putative uncharacterized pro... splicing related genes 0.68 0.2
GRMZM2G157329 1 41535740
41540223
4.5 6 r 3 53 filtered_set; syntelog; UniRef90: B6TMR7_MAIZE THO complex subunit 4 n=4 (A... splicing related genes 0.98 0.96
GRMZM2G171232 1 42164531
42166924
2.4 1 f 1 351 filtered_set; syntelog; UniRef90: B4FLI7_MAIZE Nitric oxide synthase intera... splicing related genes 1 0.99
GRMZM2G153450 1 46622335
46627171
4.8 4 r 1 389 filtered_set; syntelog; UniRef90: Q10MR0_ORYSJ Os03g0298800 protein n=6 (Po... splicing related genes 0.97 0.99
GRMZM2G121871 1 49722482
49726934
4.5 4 f 1 2218 filtered_set; syntelog; UniRef90: B6ST55_MAIZE Pre-mRNA-processing ATP-depe... splicing related genes 0.74 0.9
GRMZM2G042615 1 53340165
53346116
6 10 r 3 714 filtered_set; syntelog; UniRef90: C5X1Q3_SORBI Putative uncharacterized pro... splicing related genes 1 1
GRMZM2G083689 1 59061226
59087208
26 18 f 2 356 filtered_set; syntelog; UniRef90: C5X0L6_SORBI Putative uncharacterized pro... splicing related genes 0.95 0.88
GRMZM2G124576 1 59670859
59675001
4.1 9 r 3 966 filtered_set; syntelog; UniRef90: Q10LH4_ORYSJ Os03g0350300 protein n=5 (Or... splicing related genes 1.06 1
GRMZM2G101689 1 60861638
60865926
4.3 4 f 1 161 filtered_set; syntelog; UniRef90: B8A0D2_MAIZE Putative uncharacterized pro... splicing related genes 0.94 0.97
GRMZM2G084540 1 65220872
65226077
5.2 7 r 3 121 filtered_set; syntelog; UniRef90: C4J9J4_MAIZE Putative uncharacterized pro... splicing related genes 0.99 0.98
GRMZM2G113139 1 66575918
66581093
5.2 5 f 2 213 filtered_set; syntelog; UniRef90: Q10KI0_ORYSJ SAP domain containing protei... splicing related genes 0.93 0.95
GRMZM2G410479 1 67523715
67533727
10 15 r 1 730 filtered_set; syntelog; UniRef90: C5WXR8_SORBI Putative uncharacterized pro... splicing related genes 0.32 0.23
GRMZM2G085825 1 69086582
69090257
3.7 1 f 1 63 filtered_set; syntelog; UniRef90: B6UAA0_MAIZE Pre-mRNA-splicing factor PRP... splicing related genes 0.45 0.81
GRMZM2G056039 1 154077677
154081800
4.1 1 f 1 1809 filtered_set; syntelog; UniRef90: Q9LHA8_ARATH 70 kDa heat shock protein n=... splicing related genes 0.96 0.99
GRMZM2G065066 1 155190833
155194586
3.8 4 r 2 696 filtered_set; syntelog; UniRef90: Q2QNB1_ORYSJ Expressed protein n=1 (Oryza... splicing related genes 1 1
GRMZM2G071873 1 172194628
172200019
5.4 12 r 2 1703 filtered_set; ortholog; UniRef90: No significant hits (1e-5)... splicing related genes 0.7 0.46
GRMZM2G080603 1 178476591
178478157
1.6 2 r 4 1242 filtered_set; syntelog; UniRef90: C0PBL7_MAIZE Putative uncharacterized pro... grp1 splicing related genes 0.75 0.8
GRMZM2G151236 1 180827397
180837800
10.4 13 r 6 1107 filtered_set; syntelog; possible_transposon; UniRef90: No significant hits ... splicing related genes 0.36 0.49
GRMZM2G416069 1 201478112
201483421
5.3 10 f 2 1402 filtered_set; syntelog; possible_pseudogene; UniRef90: B4FN08_MAIZE Putativ... splicing related genes 0.98 0.9
GRMZM2G108277 1 218666876
218669807
2.9 1 f 2 132 filtered_set; syntelog; UniRef90: B8BHK6_ORYSI Putative uncharacterized pro... splicing related genes 0.87 0.89
GRMZM2G037698 1 233997474
234009065
11.6 18 r 2 49 filtered_set; syntelog; UniRef90: B6TRQ7_MAIZE Pre-mRNA-splicing factor 19 ... splicing related genes 0.99 1
GRMZM2G170699 1 235445009
235449312
4.3 8 r 1 539 filtered_set; syntelog; UniRef90: Q7XDP6_ORYSJ Os10g0457000 protein n=5 (Po... splicing related genes 0.95 0.98
GRMZM2G076597 1 237741444
237749566
8.1 13 f 5 158 filtered_set; syntelog; UniRef90: C5X0H7_SORBI Putative uncharacterized pro... splicing related genes 0.96 0.97
GRMZM2G118917 1 238325111
238344534
19.4 13 f 2 741 filtered_set; syntelog; UniRef90: C5X0K2_SORBI Putative uncharacterized pro... splicing related genes 0.77 0.79
GRMZM2G017089 1 254094619
254104550
9.9 15 r 2 1219 filtered_set; ortholog; UniRef90: Q10LQ8_ORYSJ Os03g0339100 protein n=6 (Po... splicing related genes 1 1
GRMZM2G100448 1 256689830
256697435
7.6 5 r 1 100 filtered_set; syntelog; UniRef90: Q75HS3_ORYSJ Os05g0289400 protein n=3 (Po... splicing related genes 0.9 0.6 1 Impr crooked neck protein
GRMZM2G134982 1 260147052
260150630
3.6 0 r 1 370 filtered_set; syntelog; UniRef90: C5WR33_SORBI Putative uncharacterized pro... splicing related genes 0.7 0.88
GRMZM2G083783 1 260618711
260622985
4.3 1 r 3 841 filtered_set; syntelog; UniRef90: C0P2Q6_MAIZE Putative uncharacterized pro... splicing related genes 1 0.97
GRMZM2G057394 1 266913672
266916738
3.1 1 r 2 244 filtered_set; syntelog; UniRef90: C0HHR1_MAIZE Putative uncharacterized pro... splicing related genes 0.96 0.96
GRMZM2G009843 1 276203232
276207982
4.8 4 f 2 99 filtered_set; syntelog; UniRef90: C0P357_MAIZE Putative uncharacterized pro... splicing related genes 0.91 0.96
GRMZM2G300990 1 279838236
279842812
4.6 11 f 4 56 filtered_set; ortholog; UniRef90: C4J4N9_MAIZE Putative uncharacterized pro... splicing related genes 0.96 0.92
GRMZM2G072156 1 289060501
289067681
7.2 11 f 1 53 filtered_set; syntelog; UniRef90: C5WX39_SORBI Putative uncharacterized pro... splicing related genes 1 0.99
GRMZM2G107745 1 291954036
291955046
1 1 f 1 570 filtered_set; syntelog; UniRef90: Q7XZG6_ORYSJ Os03g0811700 protein n=6 (Po... splicing related genes 0.99 0.37
GRMZM2G113250 1 296260884
296265865
5 2 r 1 817 filtered_set; syntelog; UniRef90: A9SYQ2_PHYPA Predicted protein n=5 (Embry... splicing related genes 0.84 0.64
GRMZM2G095851 1 296344357
296348667
4.3 3 f 2 900 filtered_set; syntelog; UniRef90: A9SYQ2_PHYPA Predicted protein n=5 (Embry... splicing related genes 1 0.99
GRMZM2G040369 1 296477860
296482170
4.3 3 f 2 1034 filtered_set; syntelog; UniRef90: A9SYQ2_PHYPA Predicted protein n=5 (Embry... splicing related genes 1 0.99
GRMZM2G118014 1 297048516
297054513
6 13 r 7 1218 filtered_set; syntelog; UniRef90: B6TBQ7_MAIZE RNA-binding protein Luc7-lik... splicing related genes 0.98 0.98
GRMZM2G056393 1 297588845
297608165
19.3 20 r 3 664 filtered_set; syntelog; UniRef90: No significant hits (1e-5)... splicing related genes 1 0.87
GRMZM2G021742 1 298431972
298436349
4.4 7 f 2 160 filtered_set; syntelog; UniRef90: B6TS72_MAIZE U2 small nuclear ribonucleop... splicing related genes 1 1
GRMZM2G058966 2 922841
933987
11.1 6 f 2 420 filtered_set; syntelog; UniRef90: Q7XPV9_ORYSJ OSJNBa0032F06.22 protein n=9... splicing related genes 0.95 0.98
GRMZM2G047018 2 3393037
3396062
3 2 f 4 22 filtered_set; syntelog; UniRef90: PHF5_ARATH Uncharacterized protein At1g07... splicing related genes 0.87 0.77
GRMZM2G106105 2 6991458
6994141
2.7 4 r 2 135 filtered_set; syntelog; UniRef90: Q6ZBS1_ORYSJ Os08g0177700 protein n=5 (Po... splicing related genes 0.94 0.96
GRMZM2G003307 2 19037250
19041224
4 8 r 2 157 filtered_set; syntelog; UniRef90: Q8H4L0_ORYSJ Os07g0141600 protein n=6 (Po... splicing related genes 1.07 1.02
GRMZM2G019919 2 21258086
21262844
4.8 12 f 5 244 filtered_set; syntelog; UniRef90: Q8LJR0_MAIZE Water-stress protein n=1 (Ze... splicing related genes 0.99 0.94
GRMZM2G171372 2 28034741
28037662
2.9 4 f 4 13 filtered_set; syntelog; UniRef90: Q8L3W7_ARATH Small nuclear ribonucleoprot... splicing related genes 0.82 0.94
GRMZM2G352129 2 30905783
30911404
5.6 8 r 2 667 filtered_set; syntelog; UniRef90: B6U4M0_MAIZE Polyadenylate-binding protei... splicing related genes 1 0.99
GRMZM2G139038 2 35192269
35197040
4.8 9 r 3 1626 filtered_set; syntelog; UniRef90: CDKG2_ORYSJ Cyclin-dependent kinase G-2 n... splicing related genes 1 1
GRMZM2G027571 2 39420411
39422539
2.1 3 f 2 1 filtered_set; syntelog; UniRef90: UPI0000DD9112 Os04g0470200 n=1 (Oryza sat... splicing related genes 0.98 0.99
GRMZM2G113513 2 56191723
56194333
2.6 3 f 1 3880 filtered_set; syntelog; UniRef90: B6TL11_MAIZE Glycine-rich RNA-binding pro... splicing related genes 1 0.97
GRMZM2G000980 2 71785920
71790206
4.3 1 r 1 414 filtered_set; syntelog; UniRef90: C5WNL2_SORBI Putative uncharacterized pro... splicing related genes 0.76 0.9
GRMZM2G149708 2 104729978
104750595
20.6 14 r 3 526 filtered_set; syntelog; UniRef90: Q7EYK0_ORYSJ Putative WD-40 repeat protei... splicing related genes 0.92 0.78
GRMZM2G021223 2 111133849
111136804
3 5 f 5 2675 filtered_set; syntelog; UniRef90: Q6IVD0_MAIZE Arginine/serine-rich splicin... splicing related genes 0.99 0.94
GRMZM2G132000 2 145018865
145022556
3.7 1 r 3 216 filtered_set; syntelog; UniRef90: Q2QXT9_ORYSJ GRF zinc finger family prote... splicing related genes 0.9 0.77
GRMZM2G101867 2 147707229
147712670
5.4 7 r 2 1627 filtered_set; syntelog; UniRef90: B6U752_MAIZE Heterogeneous nuclear ribonu... splicing related genes 0.95 0.96
GRMZM2G063643 2 158833840
158839110
5.3 7 r 3 4812 filtered_set; syntelog; UniRef90: Q8H2M0_ORYSJ Os07g0227400 protein n=6 (Po... splicing related genes 0.94 0.91
GRMZM2G151549 2 160538409
160543692
5.3 6 f 2 3108 filtered_set; syntelog; UniRef90: B6TRV3_MAIZE Eukaryotic translation initi... splicing related genes 1 0.98
GRMZM2G102829 2 162466718
162472431
5.7 8 f 4 1179 filtered_set; syntelog; UniRef90: Q6YYV1_ORYSJ Os09g0115400 protein n=2 (Or... splicing related genes 0.97 0.88
GRMZM2G065276 2 162962062
162982456
20.4 17 f 3 686 filtered_set; ortholog; UniRef90: C0PDQ9_MAIZE Putative uncharacterized pro... splicing related genes 0.91 0.89
GRMZM2G042807 2 164092361
164096111
3.8 5 f 1 441 filtered_set; syntelog; UniRef90: Q69K06_ORYSJ Os09g0103600 protein n=3 (Po... splicing related genes 0.86 0.96
GRMZM2G168163 2 186893558
186898412
4.9 6 f 2 226 filtered_set; syntelog; UniRef90: B8A3Q1_MAIZE Putative uncharacterized pro... splicing related genes 1 0.94
GRMZM2G052434 2 198926851
198931248
4.4 4 r 1 71 filtered_set; syntelog; UniRef90: B9FX59_ORYSJ Putative uncharacterized pro... splicing related genes 0.65 0.74
GRMZM2G014400 2 207955688
207967618
11.9 10 f 2 121 filtered_set; syntelog; UniRef90: C5XCH7_SORBI Putative uncharacterized pro... splicing related genes 0.86 0.75
GRMZM2G077823 2 212349126
212354040
4.9 10 f 5 69 filtered_set; syntelog; UniRef90: C4J6F0_MAIZE Putative uncharacterized pro... splicing related genes 0.99 0.98
GRMZM2G060160 2 213951240
213956336
5.1 6 r 2 45 filtered_set; syntelog; UniRef90: Q8LIB1_ORYSJ Os07g0644300 protein n=2 (Po... splicing related genes 0.92 0.89
GRMZM2G022763 2 229450371
229456815
6.4 9 r 4 244 filtered_set; ortholog; UniRef90: C0PGV0_MAIZE Putative uncharacterized pro... splicing related genes 0.96 0.93
GRMZM2G066902 2 230866079
230869236
3.2 1 r 1 15 filtered_set; ortholog; UniRef90: B4FSP6_MAIZE Putative uncharacterized pro... splicing related genes 0.99 0.98
GRMZM2G703415 2 231331216
231337987
6.8 8 f 2 447 filtered_set; ortholog; UniRef90: Q2QZE8_ORYSJ Os11g0689400 protein n=3 (Or... splicing related genes 0.6 0.49
GRMZM2G144890 2 232460108
232468467
8.4 3 f 1 98 filtered_set; syntelog; UniRef90: C5XC00_SORBI Putative uncharacterized pro... splicing related genes 0.86 0.96
GRMZM2G025014 2 232641434
232644325
2.9 2 f 4 279 filtered_set; ortholog; UniRef90: No significant hits (1e-5); maizesequence... splicing related genes 0.99 0.62
GRMZM2G414496 2 233104245
233127815
23.6 25 r 8 742 filtered_set; syntelog; UniRef90: No significant hits (1e-5)... splicing related genes 0.86 0.83 1 Del
GRMZM2G367206 2 233479989
233485494
5.5 13 r 7 1118 filtered_set; syntelog; UniRef90: C4IYZ9_MAIZE Putative uncharacterized pro... splicing related genes 0.97 0.86
GRMZM2G022041 2 233798711
233801595
2.9 1 r 1 1437 filtered_set; syntelog; UniRef90: C7J524_ORYSJ Os07g0166600 protein n=4 (Po... splicing related genes 0.97 0.98
GRMZM2G028834 2 233905742
233910753
5 7 f 3 1544 filtered_set; syntelog; UniRef90: B6SSB6_MAIZE Eukaryotic translation initi... splicing related genes 1 0.96
GRMZM2G090168 3 51133
63780
12.6 3 r 1 1628 filtered_set; ortholog; UniRef90: B6STM0_MAIZE Pre-mRNA-splicing factor PRP... splicing related genes 0.98 0.96
GRMZM2G386608 3 3504535
3508575
4 6 f 3 736 filtered_set; syntelog; UniRef90: Q8LAK5_ARATH Small nuclear ribonucleoprot... splicing related genes 0.72 0.83
GRMZM2G305060 3 3700709
3722327
21.6 30 r 3 818 filtered_set; syntelog; UniRef90: Q5QNI3_ORYSJ Os01g0212100 protein n=1 (Or... splicing related genes 0.73 0.67 1 Impr ATP-dependent RNA helicase
GRMZM2G143246 3 5571644
5577275
5.6 9 f 1 248 filtered_set; syntelog; UniRef90: RH20_ORYSJ DEAD-box ATP-dependent RNA hel... splicing related genes 0.99 1
GRMZM2G051458 3 8535160
8539024
3.9 10 f 3 1561 filtered_set; syntelog; UniRef90: C5XM20_SORBI Putative uncharacterized pro... splicing related genes 0.93 0.98
GRMZM2G132936 3 32948520
32957454
8.9 4 r 3 790 filtered_set; syntelog; UniRef90: C5XFM7_SORBI Putative uncharacterized pro... splicing related genes 0.81 0.89
GRMZM2G038606 3 36465309
36469955
4.6 6 r 4 889 filtered_set; syntelog; UniRef90: LSM4_ORYSJ Probable U6 snRNA-associated S... splicing related genes 1 0.97
GRMZM2G431306 3 39472712
39476212
3.5 4 r 3 2114 filtered_set; syntelog; UniRef90: C5XGI9_SORBI Putative uncharacterized pro... splicing related genes 0.95 0.97
GRMZM2G132465 3 39476674
39479631
3 2 f 5 2118 filtered_set; syntelog; UniRef90: B6TJJ4_MAIZE RNA binding protein n=3 (And... splicing related genes 1 0.99
GRMZM2G419085 3 40064475
40069037
4.6 7 r 4 2705 filtered_set; syntelog; UniRef90: B6TVN1_MAIZE BCAS2 protein n=3 (Andropogo... splicing related genes 1 0.99
GRMZM2G331811 3 57208276
57230236
22 14 r 7 127 filtered_set; syntelog; UniRef90: Q64HC0_MAIZE ASF/SF2-like pre-mRNA splici... splicing related genes 0.76 0.82
GRMZM2G037683 3 58293668
58305532
11.9 14 r 1 1210 filtered_set; syntelog; UniRef90: C0HFQ9_MAIZE Putative uncharacterized pro... splicing related genes 1 0.97
GRMZM2G147811 3 95859757
95870872
11.1 14 r 4 2033 filtered_set; syntelog; UniRef90: C5YTD4_SORBI Putative uncharacterized pro... splicing related genes 0.62 0.72
GRMZM2G114584 3 122107547
122114417
6.9 5 f 3 34 filtered_set; syntelog; UniRef90: C5YRV0_SORBI Putative uncharacterized pro... splicing related genes 0.99 0.97
GRMZM2G340251 3 126459904
126465045
5.1 2 r 4 304 filtered_set; syntelog; UniRef90: Q9LHA8_ARATH 70 kDa heat shock protein n=... hsp70-4 splicing related genes 0.96 0.68 3 ExtDel heat shock protein 70
GRMZM2G049902 3 133452330
133455849
3.5 0 r 1 609 filtered_set; syntelog; UniRef90: C5YP81_SORBI Putative uncharacterized pro... splicing related genes 0.9 0.97
GRMZM2G150521 3 135219277
135223126
3.8 4 r 1 535 filtered_set; syntelog; UniRef90: B6TI13_MAIZE Glycine-rich RNA-binding pro... splicing related genes 0.9 0.97
GRMZM2G060540 3 147014165
147020082
5.9 11 r 2 386 filtered_set; syntelog; UniRef90: C5XIK9_SORBI Putative uncharacterized pro... splicing related genes 1 0.97
GRMZM2G362850 3 163743655
163748723
5.1 10 r 3 1230 filtered_set; syntelog; UniRef90: RH30_ORYSJ DEAD-box ATP-dependent RNA hel... drh1 splicing related genes 0.96 0.92
GRMZM2G125531 3 170277042
170281693
4.7 6 r 4 173 filtered_set; syntelog; UniRef90: Q5N8G9_ORYSJ Os01g0886300 protein n=4 (Po... splicing related genes 0.96 0.88

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