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Maize Loci/Annotations  ?

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Locus ID
(5a.59 models)
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Ds
Dist
(kb)
?
Locus Description
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Gene Gene Structure Annotation Project ? Cov
er
age
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Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
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Annotate it!
GRMZM2G164696 1 2037790
2040079
2.3 2 f 3 121 filtered_set; syntelog; UniRef90: TBB2_ARATH Tubulin beta-2/beta-3 chain n=... tub1 classical maize genes 0.98 0.86
GRMZM2G090568 1 7160314
7162590
2.3 5 r 2 239 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... cat2 classical maize genes 0.99 0.87
GRMZM2G339563 1 10092334
10096672
4.3 6 f 1 442 filtered_set; syntelog; UniRef90: O04129_MAIZE Lethal leaf-spot 1 (Fragment... lls1 classical maize genes 0.99 1
GRMZM2G092542 1 10826297
10827541
1.2 1 r 2 6 filtered_set; syntelog; UniRef90: A5H448_MAIZE Rootless concerning crown an... rtcs1 classical maize genes 1 0.66 2 ConfDel LOB domain-containing protein
GRMZM2G172322 1 12987102
12993471
6.4 10 f 3 409 filtered_set; syntelog; UniRef90: O64409_MAIZE Glutathione reductase (Fragm... gsr1 classical maize genes 0.99 0.99
GRMZM2G091822 1 14506335
14508661
2.3 4 r 1 392 filtered_set; syntelog; UniRef90: B6TED7_MAIZE Cytochrome P450 CYP704B12v2 ... ms26 classical maize genes 1 0.96
GRMZM2G410515 1 17660941
17667054
6.1 14 f 2 526 filtered_set; syntelog; UniRef90: CRTI_ORYSJ Phytoene dehydrogenase, chloro... vp5 classical maize genes 1 0.97
GRMZM2G155242 1 25284139
25288349
4.2 9 f 2 875 filtered_set; syntelog; UniRef90: INO1_ORYSJ Inositol-3-phosphate synthase ... lpa1 classical maize genes 0.99 1
GRMZM2G050514 1 27977783
27981439
3.7 11 r 3 -1 filtered_set; syntelog; UniRef90: GLNA1_MAIZE Glutamine synthetase root iso... gln6 classical maize genes 0.96 0.9
GRMZM2G110309 1 40352197
40357695
5.5 9 f 1 41 filtered_set; syntelog; UniRef90: Q43703_MAIZE Initiator-binding protein n=... ibp2 classical maize genes 1 1
GRMZM2G087186 1 45512802
45515978
3.2 5 r 4 173 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... pdc3 classical maize genes 1 0.96 1 Conf pyruvate decarboxylase
GRMZM2G455809 1 46678942
46680363
1.4 1 f 1 445 filtered_set; syntelog; UniRef90: TS2_MAIZE Sex determination protein tasse... ts2 classical maize genes 1 0.99
GRMZM2G321753 1 47291535
47321106
29.6 30 f 2 49 filtered_set; syntelog; UniRef90: Q6ZFZ4_ORYSJ Os02g0709400 protein n=7 (Po... dek1 classical maize genes 0.65 0.66
GRMZM2G377215 1 47504495
47507003
2.5 1 f 2 0 filtered_set; syntelog; UniRef90: Q5YLM2_MAIZE Roothairless 3 n=2 (Andropog... rth3 classical maize genes 1 1
GRMZM2G057027 1 48092121
48097632
5.5 3 r 2 588 filtered_set; syntelog; UniRef90: C6G8B2_MAIZE P1-WR 5 n=7 (Zea mays) Exp=7... p2 classical maize genes 0.98 0.89
GRMZM2G084799 1 48117497
48128047
10.6 2 f 1 613 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... p1 classical maize genes 1 0.95
GRMZM2G124532 1 50025637
50036980
11.3 3 f 3 2120 filtered_set; other; UniRef90: Q1A5Y4_MAIZE Phytochrome B1 (Fragment) n=1 (... phyB1 classical maize genes 0.83 0.93
GRMZM2G152891 1 52095395
52099196
3.8 2 f 3 58 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... cal3 classical maize genes 0.8 0.82
GRMZM2G018728 1 52807627
52810251
2.6 4 r 2 181 filtered_set; syntelog; UniRef90: ZB14_MAIZE 14 kDa zinc-binding protein n=... pki1 classical maize genes 0.81 0.91
GRMZM2G044074 1 56558221
56562800
4.6 7 f 2 192 filtered_set; syntelog; UniRef90: DCUP2_ORYSJ Uroporphyrinogen decarboxylas... les22 classical maize genes 0.95 0.89
GRMZM2G169890 1 60145100
60148692
3.6 7 f 4 552 filtered_set; syntelog; UniRef90: P93801_MAIZE Superoxide dismutase [Cu-Zn]... sod4 classical maize genes 1 1
GRMZM2G123140 1 100903698
100909663
6 10 r 5 2503 filtered_set; syntelog; UniRef90: Q9LEE7_MAIZE OCL4 protein n=4 (Andropogon... ocl4 classical maize genes 1 1
GRMZM2G456626 1 101830081
101832342
2.3 0 r 1 1581 filtered_set; syntelog; UniRef90: ITPK1_MAIZE Inositol-tetrakisphosphate 1-... lpa2 classical maize genes 0.75 0.9
GRMZM2G170839 1 132568513
132571279
2.8 3 f 2 5914 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... xyl1 classical maize genes 1 0.86
GRMZM2G403620 1 154952735
154957201
4.5 1 r 2 934 filtered_set; syntelog; UniRef90: RS2_MAIZE Protein rough sheath 2 n=2 (And... rs2 classical maize genes 1 0.68 2 ExtConf myb family transcription factor
GRMZM2G062788 1 158313837
158325193
11.4 3 f 1 601 filtered_set; ortholog; UniRef90: Q9XF14_MAIZE Bundle sheath defective prot... bsd2 classical maize genes 0.99 0.98
GRMZM2G171822 1 173846756
173848499
1.7 1 f 1 3355 filtered_set; syntelog; UniRef90: A6MW92_MAIZE Barren inflorescence2 n=1 (Z... bif2 classical maize genes 0.29 0.17
GRMZM2G080603 1 178476591
178478157
1.6 2 r 4 1242 filtered_set; syntelog; UniRef90: C0PBL7_MAIZE Putative uncharacterized pro... grp1 classical maize genes 0.75 0.8
GRMZM2G159397 1 194013508
194021595
8.1 7 f 2 -4 filtered_set; syntelog; UniRef90: B6T6U6_MAIZE SRF-type transcription facto... zmm6 classical maize genes 0.77 0.93
GRMZM2G175423 1 197267922
197271011
3.1 2 f 2 -1 filtered_set; syntelog; UniRef90: Q0QWI2_MAIZE Sorbitol dehydrogenase n=3 (... sdh1 classical maize genes 0.97 0.99
GRMZM5G881887 1 199754467
199756329
1.9 4 f 2 250 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... hm1 classical maize genes 1 0.87
GRMZM2G056400 1 215606266
215611664
5.4 5 r 1 165 filtered_set; syntelog; UniRef90: B5M492_MAIZE Kanadi1 n=1 (Zea mays) Exp=0... kan1 classical maize genes 1 1
GRMZM2G078412 1 220979365
220991421
12.1 8 r 3 130 filtered_set; syntelog; UniRef90: CRS1_MAIZE Chloroplastic group IIA intron... crs1 classical maize genes 1 0.95
GRMZM2G167824 1 225032510
225037728
5.2 6 f 2 115 filtered_set; syntelog; UniRef90: Q7X9M6_MAIZE Yabby10 protein n=2 (Zea may... yab10 classical maize genes 0.99 1
GRMZM2G415359 1 231336185
231341950
5.8 6 r 3 62 filtered_set; syntelog; UniRef90: MDHC_ORYSJ Malate dehydrogenase, cytoplas... mdh4 classical maize genes 0.91 0.97
GRMZM2G011357 1 239608944
239612267
3.3 3 r 1 400 filtered_set; syntelog; UniRef90: O65215_MAIZE Zinc finger protein ID1 n=1 ... id1 classical maize genes 1 0.98
GRMZM2G081554 1 241218603
241226854
8.3 12 f 6 42 filtered_set; syntelog; UniRef90: Q41771_MAIZE Kaurene synthase A n=1 (Zea ... an1 classical maize genes 0.99 0.89
GRMZM2G016241 1 241371943
241373296
1.4 1 r 2 -1 filtered_set; syntelog; UniRef90: GSTX2_MAIZE Probable glutathione S-transf... bz2 classical maize genes 0.9 0.94
GRMZM2G167986 1 243649093
243651434
2.3 1 f 2 1215 filtered_set; syntelog; UniRef90: B6U102_MAIZE Cytochrome P450 CYP78A1 n=2 ... cyp8 classical maize genes 1 0.96
GRMZM2G018627 1 247758733
247760445
1.7 2 f 2 1807 filtered_set; syntelog; UniRef90: CB23_ORYSJ Chlorophyll a-b binding protei... lhcb9 classical maize genes 0.94 0.67 2 Ext chlorophyll a-b binding protein
GRMZM2G364069 1 250092343
250095992
3.6 5 r 1 233 filtered_set; syntelog; UniRef90: Q84PD0_ORYSJ DnaJ protein n=7 (Poaceae) E... cdj2 classical maize genes 0.97 0.99
GRMZM2G014392 1 250892567
250895242
2.7 0 r 1 1033 filtered_set; syntelog; UniRef90: NCED1_MAIZE 9-cis-epoxycarotenoid dioxyge... vp14 classical maize genes 0.94 0.98
GRMZM2G099056 1 253893686
253906936
13.3 24 f 1 1259 filtered_set; syntelog; UniRef90: Q10GJ5_ORYSJ Roothairless 1, putative, ex... rth1 classical maize genes 0.88 0.87
GRMZM2G163761 1 256513586
256515267
1.7 3 f 1 282 filtered_set; syntelog; UniRef90: Q8RXA9_MAIZE Knotted1-interacting protein... kip1 classical maize genes 1 1
GRMZM2G067919 1 258363413
258366718
3.3 5 f 2 1036 filtered_set; syntelog; UniRef90: Q9ATH8_ZEADI Globulin 1 (Fragment) n=1 (Z... glb1 classical maize genes 0.85 0.86
GRMZM2G108766 1 258551317
258555376
4.1 3 r 3 1222 filtered_set; syntelog; UniRef90: A3AL37_ORYSJ Putative uncharacterized pro... tub3 classical maize genes 0.94 0.84
GRMZM2G109130 1 264200949
264205758
4.8 6 f 2 1198 filtered_set; syntelog; UniRef90: C9DHL2_SORBI LOX1 n=4 (Andropogoneae) Exp... lox3 classical maize genes 1 0.97
AC233950.1_FG002 1 265745979
265747712
1.7 0 f 1 1413 filtered_set; syntelog; UniRef90: TB1_MAIZE Transcription factor TEOSINTE B... tb1 classical maize genes 1 0.96
GRMZM2G144744 1 266094769
266097836
3.1 1 f 3 1063 filtered_set; syntelog; UniRef90: DWRF8_MAIZE DELLA protein DWARF8 n=6 (And... d8 classical maize genes 0.98 0.77
GRMZM2G024104 1 267894143
267897525
3.4 12 r 5 110 filtered_set; syntelog; UniRef90: GLNA2_MAIZE Glutamine synthetase root iso... gln2 classical maize genes 0.82 0.93
GRMZM2G157727 1 269322348
269329351
7 5 r 2 39 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... phyA1 classical maize genes 0.92 0.84
GRMZM2G017087 1 271340805
271348525
7.7 6 r 3 420 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... Kn1 classical maize genes 1 0.86 2 ConfVar homeobox protein
GRMZM2G000743 1 271627017
271628373
1.4 2 r 1 141 filtered_set; syntelog; UniRef90: B6TIY4_MAIZE KNOX1 domain containing prot... knox3 classical maize genes 0.8 0.94
GRMZM2G092198 1 272034519
272036983
2.5 1 f 1 266 filtered_set; syntelog; UniRef90: C5WM09_SORBI Putative uncharacterized pro... emp4 classical maize genes 1 0.97
GRMZM2G442658 1 273983252
273987146
3.9 10 r 8 532 filtered_set; syntelog; UniRef90: Q2R8Z1_ORYSJ Alcohol dehydrogenase 2, put... adh1 classical maize genes 0.94 0.94
GRMZM2G016671 1 276329889
276362808
32.9 16 r 6 5 filtered_set; syntelog; UniRef90: Q6RK06_MAIZE Tousled-like kinase 2 n=4 (A... tlk1 classical maize genes 0.88 0.75
GRMZM2G057935 1 276992819
276997822
5 3 r 1 352 filtered_set; syntelog; UniRef90: PHYC_SORBI Phytochrome C n=12 (Andropogon... phyC1 classical maize genes 0.93 0.98
GRMZM2G087095 1 277310667
277348765
38.1 7 r 2 1 filtered_set; syntelog; UniRef90: B4XAV3_MAIZE MADS-box transcription facto... zmm24 classical maize genes 0.99 0.96
GRMZM2G090422 1 277739114
277741150
2 3 f 2 390 filtered_set; syntelog; UniRef90: Q75J18_ORYSJ Os03g0756000 protein n=11 (P... mta1 classical maize genes 0.96 0.85
GRMZM2G047855 1 279418287
279424292
6 9 r 1 474 filtered_set; syntelog; UniRef90: B6F107_ORYSJ Casein kinase II alpha subun... cka2 classical maize genes 1 0.99
AC234157.1_FG002 1 281107354
281109091
1.7 1 r 1 221 filtered_set; syntelog; UniRef90: B6TQC6_MAIZE 30S ribosomal protein S9 n=5... lem1 classical maize genes 1 0.9
GRMZM2G010353 1 286319225
286327417
8.2 9 f 2 2213 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... vp8 classical maize genes 0.98 0.83
GRMZM2G026703 1 287062939
287065014
2.1 3 r 1 1677 filtered_set; syntelog; UniRef90: B6UGJ0_MAIZE Globulin-1 S allele n=2 (Zea... glb2 classical maize genes 0.97 0.96
GRMZM2G178415 1 287289676
287296815
7.1 9 r 6 1445 filtered_set; syntelog; UniRef90: No significant hits (1e-5)... gdh1 classical maize genes 0.88 0.95
GRMZM2G016150 1 288207521
288212296
4.8 5 r 1 530 filtered_set; syntelog; UniRef90: Q03462_MAIZE Opaque2 heterodimerizing pro... ohp1 classical maize genes 0.94 0.98
GRMZM2G046191 1 288261016
288266253
5.2 7 r 5 476 filtered_set; syntelog; UniRef90: Q9FQ76_MAIZE Putative tryptophan synthase... igl1 classical maize genes 0.99 0.93
GRMZM2G111642 1 290593939
290599907
6 14 r 4 1473 filtered_set; ortholog; UniRef90: C5WW43_SORBI Putative uncharacterized pro... cesa5 classical maize genes 0.93 0.98
GRMZM5G862109 1 292889740
292893983
4.2 9 f 3 140 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... ts6 classical maize genes 1 1
GRMZM2G155329 1 293041177
293042705
1.5 3 r 2 8 filtered_set; syntelog; UniRef90: CFI_MAIZE Chalcone--flavonone isomerase n... chi1 classical maize genes 1 0.99
GRMZM2G053458 1 296017136
296022027
4.9 2 f 3 573 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... fdx3 classical maize genes 0.74 0.81
GRMZM2G113137 1 296254082
296259864
5.8 13 f 1 810 filtered_set; syntelog; UniRef90: CESA5_ORYSJ Probable cellulose synthase A... cesa6 classical maize genes 1 1
GRMZM2G035017 1 296874949
296877709
2.8 4 r 1 1395 filtered_set; syntelog; UniRef90: RS4_ORYSJ 40S ribosomal protein S4 n=13 (... rps4 classical maize genes 0.97 0.98 1 Conf 40S ribosomal protein S4
GRMZM2G062396 2 3556786
3558729
1.9 2 f 1 39 filtered_set; syntelog; UniRef90: Q43262_MAIZE Flavanone 3-beta-hydroxylase... fht1 classical maize genes 0.96 0.97
GRMZM2G036297 2 4259524
4263201
3.7 2 r 1 -0 filtered_set; syntelog; UniRef90: LG1_MAIZE Protein LIGULELESS 1 n=2 (Zea m... lg1 classical maize genes 0.88 0.96
GRMZM2G019404 2 4299718
4307332
7.6 14 r 2 37 filtered_set; syntelog; UniRef90: PMA1_ORYSJ Plasma membrane ATPase n=10 (P... mha2 classical maize genes 0.97 0.97
GRMZM2G098239 2 10624501
10627540
3 1 r 3 242 filtered_set; syntelog; UniRef90: Q41809_MAIZE Orf protein n=2 (Andropogone... gl2 classical maize genes 1 0.99
GRMZM2G180190 2 12641797
12644804
3 2 r 1 154 filtered_set; syntelog; UniRef90: Q5Q1I9_ZEAMP Floricaula/leafy-like 2 n=24... zfl2 classical maize genes 0.94 0.97
GRMZM2G172795 2 18417370
18421827
4.5 5 f 1 69 filtered_set; syntelog; UniRef90: Q8S470_MAIZE Regulatory protein n=1 (Zea ... b1 classical maize genes 0.92 0.86
GRMZM2G337229 2 20765568
20767537
2 1 f 1 192 filtered_set; syntelog; UniRef90: B6UGS3_MAIZE Oleosin n=1 (Zea mays) Exp=1... ole1 classical maize genes 0.89 0.36
GRMZM2G394450 2 22880766
22885337
4.6 6 r 1 176 filtered_set; syntelog; UniRef90: INV1_MAIZE Beta-fructofuranosidase 1 n=2 ... ivr1 classical maize genes 1 1
GRMZM2G035688 2 27478703
27483682
5 6 r 2 378 filtered_set; syntelog; UniRef90: Q9FXQ7_MAIZE Response regulator n=2 (Andr... abph1 classical maize genes 0.8 0.7
GRMZM2G178693 2 27867805
27870068
2.3 2 r 1 -1 filtered_set; syntelog; UniRef90: PIP24_MAIZE Aquaporin PIP2-4 n=9 (Poaceae... pip2a classical maize genes 0.98 0.96
GRMZM2G154397 2 32491968
32495438
3.5 3 r 4 456 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... sam2 classical maize genes 0.92 0.85
GRMZM2G051943 2 33534101
33535449
1.3 1 f 1 530 filtered_set; syntelog; UniRef90: CHIA_MAIZE Endochitinase A n=73 (Andropog... cta1 classical maize genes 0.95 0.96
GRMZM2G042443 2 40502579
40508183
5.6 3 r 2 435 filtered_set; syntelog; UniRef90: Q19VG2_MAIZE RNA-dependent RNA polymerase... mop1 classical maize genes 0.89 0.92
GRMZM2G102356 2 40588194
40589174
1 1 r 2 520 filtered_set; syntelog; UniRef90: Q19VG6_MAIZE Major latex protein 22 n=3 (... prp2 classical maize genes 0.94 0.89
GRMZM2G102499 2 41302953
41306867
3.9 5 r 4 178 filtered_set; syntelog; UniRef90: 14332_ORYSJ 14-3-3-like protein GF14-B n=... grf1 classical maize genes 1 0.95
GRMZM2G337113 2 42257261
42259297
2 3 r 3 166 filtered_set; ortholog; UniRef90: G3PA_MAIZE Glyceraldehyde-3-phosphate deh... gpa1 classical maize genes 1 0.98
GRMZM2G104843 2 45192092
45196460
4.4 6 r 2 -2 filtered_set; syntelog; UniRef90: A1XCI3_MAIZE Lipoxygenase n=1 (Zea mays) ... ts1 classical maize genes 0.97 0.99
GRMZM2G086971 2 47111123
47117012
5.9 17 r 9 -1 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... ypt1 classical maize genes 1.13 1.03
GRMZM2G168651 2 54763050
54764823
1.8 1 r 1 3525 filtered_set; ortholog; possible_transposon; UniRef90: No significant hits ... hrg1 classical maize genes 1 0.97
GRMZM2G119689 2 56806976
56810257
3.3 6 f 3 3264 filtered_set; syntelog; UniRef90: B6UD65_MAIZE Beta-fructofuranosidase, ins... mn1 classical maize genes 0.97 0.99
GRMZM2G075081 2 57743289
57745304
2 3 f 2 2329 filtered_set; syntelog; UniRef90: A8WER6_MAIZE ZCN4 n=5 (Andropogoneae) Exp... zcn4 classical maize genes 0.99 0.98
GRMZM2G073054 2 58586007
58596234
10.2 21 f 2 1478 filtered_set; syntelog; UniRef90: O24421_MAIZE Starch branching enzyme IIa ... sbe3 classical maize genes 0.99 0.98
GRMZM5G898735 2 65182701
65189244
6.5 5 f 2 1223 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... hcf106 classical maize genes 0.87 0.93
GRMZM5G858094 2 82394515
82407013
12.5 32 f 2 3897 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... acc1 classical maize genes 1 0.96
GRMZM2G075215 2 119661036
119662735
1.7 3 f 1 5850 filtered_set; ortholog; UniRef90: A8WES8_MAIZE ZCN17 n=3 (Andropogoneae) Ex... zcn17 classical maize genes 0.93 0.91
GRMZM2G085924 2 127092912
127094499
1.6 1 r 1 1104 filtered_set; ortholog; UniRef90: B6UD26_MAIZE O-methyltransferase ZRP4 n=2... hsbp1 classical maize genes 0.94 0.95
GRMZM2G069028 2 142531613
142533651
2 2 f 3 1642 filtered_set; syntelog; UniRef90: WOX3A_MAIZE WUSCHEL-related homeobox 3A n... ns1 classical maize genes 0.97 0.66 1 Ext Homeobox domain containing protein
GRMZM2G113033 2 142794871
142796060
1.2 1 f 2 1905 filtered_set; syntelog; UniRef90: RBS_MAIZE Ribulose bisphosphate carboxyla... ssu2 classical maize genes 0.9 0.97

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