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SmGDB Downloads

SmGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of SmGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The Spikemoss genome assembly is still being refined and completed. SmGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
SMcdna183.bz2 May 25 2011 23.62 KB
SMest183.bz2 May 25 2011 18.49 MB
SMput165a.bz2 May 25 2011 5.08 MB
Smoellendorffii_91.fa.gz May 19 2011 60.17 MB
Smoellendorffii_91_RM.fa.gz May 19 2011 60.17 MB
Smoellendorffii_91_annotation_info.txt.gz May 19 2011 426.37 KB
Smoellendorffii_91_cds.fa.gz May 19 2011 7.57 MB
Smoellendorffii_91_gene.gff3.gz May 19 2011 2.37 MB
Smoellendorffii_91_gene_exons.gff3.gz May 19 2011 3.28 MB
Smoellendorffii_91_peptide.fa.gz May 19 2011 4.91 MB
Smoellendorffii_91_transcript.fa.gz May 19 2011 7.82 MB
configure May 25 2011 1.78 KB
/previous directory

NOTE: For convenient batch download of SmGDB data files, visit our FTP site

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