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SlGDB Downloads

SlGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of SlGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The tomato genome assembly is still being refined and completed. SlGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
ITAG2_README.txt Jun 8 2011 7.36 KB
ITAG2_cdna.fasta Jun 8 2011 38.14 MB
ITAG2_cds.fasta Jun 8 2011 38.14 MB
ITAG2_gene_models.gff3 Jun 8 2011 56 MB
ITAG2_genomic.fasta Jun 8 2011 757.92 MB
ITAG2_genomic_all.gff3 Jun 8 2011 520.25 MB
ITAG2_protein_functional.gff3 Jun 8 2011 390.27 MB
ITAG2_proteins.fasta Jun 8 2011 19.77 MB
gaType Jun 8 2011 20.23 MB
gaTypeU Jun 8 2011 123 bytes
gmType Jun 8 2011 1.72 MB
gmTypeU Jun 8 2011 654 bytes
/previous directory

NOTE: For convenient batch download of SlGDB data files, visit our FTP site

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