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PtGDB Downloads

PtGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of PtGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The western balsam poplar genome assembly is still being refined and completed. PtGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
0README Feb 14 2012 550 bytes
ATpep.bz2 Nov 8 2010 7.64 MB
OSpep.bz2 Nov 8 2010 16.27 MB
PTcdna.bz2 Nov 8 2010 1.31 MB
PTcds1.bz2 Nov 8 2010 13.85 MB
PTest.bz2 Nov 8 2010 14.52 MB
PTgenome.bz2 Nov 8 2010 106.97 MB
PTpep.bz2 Nov 8 2010 8.38 MB
PTpep1.bz2 Nov 8 2010 8.91 MB
PTput.bz2 Nov 8 2010 5.67 MB
PTtranscript.bz2 Nov 8 2010 13.58 MB
PTtranscript1.bz2 Nov 8 2010 17.64 MB
PtGDB179.sql.bz2 Jan 4 2011 88.89 MB
Ptrichocarpa_156_annotation_info.txt.bz2 Feb 14 2012 604.86 KB
Ptrichocarpa_156_cds.fa.bz2 Feb 14 2012 13.93 MB
Ptrichocarpa_156_gene.gff3.bz2 Feb 14 2012 4.43 MB
Ptrichocarpa_156_peptide.fa.bz2 Feb 14 2012 8.91 MB
Ptrichocarpa_156_transcript.fa.bz2 Feb 14 2012 17.34 MB

NOTE: For convenient batch download of PtGDB data files, visit our FTP site

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